Query 046258
Match_columns 900
No_of_seqs 644 out of 5162
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1E-133 2E-138 1149.4 80.9 759 5-842 1-777 (786)
2 PRK10865 protein disaggregatio 100.0 3E-111 7E-116 1017.9 91.2 841 1-848 1-855 (857)
3 TIGR03346 chaperone_ClpB ATP-d 100.0 1E-109 3E-114 1010.1 94.8 830 6-840 1-846 (852)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 2E-109 4E-114 998.4 89.9 816 6-840 1-851 (852)
5 CHL00095 clpC Clp protease ATP 100.0 9E-108 2E-112 992.5 88.5 786 2-852 1-813 (821)
6 KOG1051 Chaperone HSP104 and r 100.0 2E-104 4E-109 919.3 54.6 816 2-841 8-854 (898)
7 TIGR02639 ClpA ATP-dependent C 100.0 3E-100 7E-105 916.8 75.4 706 6-838 1-730 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 1.9E-99 4E-104 892.9 76.1 716 6-849 2-745 (758)
9 COG0466 Lon ATP-dependent Lon 100.0 2.7E-62 5.8E-67 542.7 28.9 504 305-883 84-684 (782)
10 PRK10787 DNA-binding ATP-depen 100.0 6.7E-48 1.5E-52 459.6 31.7 506 305-884 84-683 (784)
11 KOG2004 Mitochondrial ATP-depe 100.0 5E-47 1.1E-51 417.2 31.9 431 390-884 249-809 (906)
12 TIGR00763 lon ATP-dependent pr 100.0 3E-44 6.5E-49 434.4 33.9 500 307-883 79-686 (775)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-41 7.7E-46 365.0 31.8 506 176-827 187-741 (802)
14 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-35 2.9E-40 327.6 34.4 430 179-825 184-658 (693)
15 TIGR01243 CDC48 AAA family ATP 100.0 4E-31 8.6E-36 320.1 38.3 455 176-825 175-678 (733)
16 TIGR00382 clpX endopeptidase C 100.0 4.9E-31 1.1E-35 290.5 21.8 253 558-825 77-390 (413)
17 PRK05342 clpX ATP-dependent pr 100.0 6.5E-30 1.4E-34 284.0 22.3 254 558-825 71-384 (412)
18 KOG0736 Peroxisome assembly fa 100.0 5.4E-28 1.2E-32 269.4 34.3 459 180-826 402-902 (953)
19 COG2204 AtoC Response regulato 100.0 6.5E-29 1.4E-33 273.3 19.6 265 525-821 100-376 (464)
20 KOG0735 AAA+-type ATPase [Post 100.0 5.5E-26 1.2E-30 251.0 33.1 428 199-828 430-894 (952)
21 COG3604 FhlA Transcriptional r 100.0 7.2E-28 1.6E-32 259.0 15.0 228 559-825 224-461 (550)
22 COG3829 RocR Transcriptional r 99.9 3.4E-27 7.4E-32 257.9 16.8 230 557-817 244-477 (560)
23 PF07724 AAA_2: AAA domain (Cd 99.9 3.1E-27 6.8E-32 232.3 10.5 154 586-751 1-171 (171)
24 TIGR02974 phageshock_pspF psp 99.9 6E-25 1.3E-29 239.7 18.2 228 560-818 1-232 (329)
25 KOG0741 AAA+-type ATPase [Post 99.9 1.9E-23 4.2E-28 223.9 23.4 169 198-383 254-441 (744)
26 PRK11608 pspF phage shock prot 99.9 2.2E-23 4.9E-28 227.9 19.2 230 558-818 6-239 (326)
27 COG3283 TyrR Transcriptional r 99.9 4.1E-23 8.8E-28 212.0 18.7 226 556-817 202-430 (511)
28 TIGR02329 propionate_PrpR prop 99.9 4.9E-23 1.1E-27 236.1 20.3 229 557-818 211-449 (526)
29 PRK15424 propionate catabolism 99.9 5.3E-23 1.1E-27 235.3 19.5 226 558-817 219-463 (538)
30 COG1219 ClpX ATP-dependent pro 99.9 3.6E-23 7.8E-28 209.9 15.7 263 531-823 49-371 (408)
31 TIGR01817 nifA Nif-specific re 99.9 4.5E-23 9.8E-28 241.9 18.5 228 558-818 196-427 (534)
32 PRK05022 anaerobic nitric oxid 99.9 8E-23 1.7E-27 237.4 20.0 229 559-819 188-420 (509)
33 COG1221 PspF Transcriptional r 99.9 9.5E-23 2E-27 220.9 17.6 233 553-820 73-310 (403)
34 PRK05201 hslU ATP-dependent pr 99.9 1.6E-22 3.5E-27 218.8 17.8 238 558-822 15-409 (443)
35 TIGR02902 spore_lonB ATP-depen 99.9 8.5E-22 1.8E-26 228.3 25.0 286 550-883 57-446 (531)
36 PRK10820 DNA-binding transcrip 99.9 1.5E-22 3.2E-27 234.9 18.6 230 557-818 203-436 (520)
37 COG0464 SpoVK ATPases of the A 99.9 1.2E-20 2.7E-25 219.8 34.6 428 193-824 11-467 (494)
38 TIGR00390 hslU ATP-dependent p 99.9 1.5E-21 3.3E-26 211.2 18.4 141 659-822 246-407 (441)
39 PRK10923 glnG nitrogen regulat 99.9 1.4E-21 3.1E-26 227.0 19.4 262 526-819 100-371 (469)
40 COG1222 RPT1 ATP-dependent 26S 99.9 1.8E-21 3.8E-26 201.7 17.6 198 176-401 148-371 (406)
41 PRK15429 formate hydrogenlyase 99.9 2.8E-21 6E-26 233.1 20.9 229 559-818 377-608 (686)
42 TIGR02915 PEP_resp_reg putativ 99.9 5.1E-21 1.1E-25 221.0 20.9 262 526-818 98-371 (445)
43 PRK11388 DNA-binding transcrip 99.9 2E-21 4.3E-26 233.2 18.0 226 557-817 324-552 (638)
44 KOG0745 Putative ATP-dependent 99.9 7E-21 1.5E-25 200.4 18.1 231 589-840 227-523 (564)
45 PRK15115 response regulator Gl 99.9 8.5E-21 1.8E-25 219.1 20.5 262 526-818 102-366 (444)
46 COG1223 Predicted ATPase (AAA+ 99.9 3.2E-20 7E-25 183.2 19.5 183 176-381 118-318 (368)
47 PF00158 Sigma54_activat: Sigm 99.9 4.7E-21 1E-25 188.0 12.8 164 560-750 1-164 (168)
48 PRK11361 acetoacetate metaboli 99.8 3.9E-20 8.4E-25 214.6 21.5 262 526-818 101-375 (457)
49 TIGR01818 ntrC nitrogen regula 99.8 3.1E-20 6.6E-25 215.8 19.8 262 526-819 95-367 (463)
50 COG2256 MGS1 ATPase related to 99.8 1.7E-20 3.7E-25 197.7 15.1 188 176-399 21-217 (436)
51 TIGR02880 cbbX_cfxQ probable R 99.8 1.8E-19 3.8E-24 193.1 21.1 211 559-826 23-260 (284)
52 TIGR02903 spore_lon_C ATP-depe 99.8 1.2E-18 2.5E-23 205.2 29.0 216 552-815 148-398 (615)
53 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-19 3.2E-24 193.4 19.5 216 557-827 22-262 (287)
54 COG2204 AtoC Response regulato 99.8 1.2E-20 2.5E-25 208.3 8.9 242 101-396 83-365 (464)
55 KOG0738 AAA+-type ATPase [Post 99.8 1.4E-19 3.1E-24 188.4 15.6 197 177-401 210-431 (491)
56 CHL00195 ycf46 Ycf46; Provisio 99.8 2.2E-17 4.8E-22 187.4 34.3 169 590-820 261-445 (489)
57 PF05496 RuvB_N: Holliday junc 99.8 2.9E-19 6.3E-24 177.5 14.6 187 552-799 18-212 (233)
58 COG3604 FhlA Transcriptional r 99.8 3.2E-20 6.9E-25 200.4 8.3 183 177-378 221-437 (550)
59 KOG0730 AAA+-type ATPase [Post 99.8 6.6E-19 1.4E-23 195.9 17.5 175 198-401 466-651 (693)
60 TIGR02881 spore_V_K stage V sp 99.8 2.6E-18 5.6E-23 183.0 20.8 218 557-829 5-248 (261)
61 PRK10365 transcriptional regul 99.8 1.6E-18 3.4E-23 200.3 19.7 228 560-818 141-371 (441)
62 KOG0733 Nuclear AAA ATPase (VC 99.8 7.1E-19 1.5E-23 192.4 15.5 175 198-399 543-730 (802)
63 COG3829 RocR Transcriptional r 99.8 8.2E-20 1.8E-24 200.3 8.1 195 176-397 242-471 (560)
64 PF05496 RuvB_N: Holliday junc 99.8 3.6E-19 7.9E-24 176.8 11.2 179 176-398 21-225 (233)
65 COG3284 AcoR Transcriptional a 99.8 7E-19 1.5E-23 196.7 13.0 220 562-817 317-538 (606)
66 COG1220 HslU ATP-dependent pro 99.8 3E-18 6.5E-23 175.5 13.8 152 662-840 252-424 (444)
67 COG2256 MGS1 ATPase related to 99.8 4.4E-18 9.5E-23 179.7 15.4 194 551-816 17-217 (436)
68 KOG0736 Peroxisome assembly fa 99.8 6.4E-18 1.4E-22 189.6 17.5 170 178-365 671-867 (953)
69 COG1222 RPT1 ATP-dependent 26S 99.8 8.1E-18 1.8E-22 174.7 15.9 201 556-820 149-373 (406)
70 COG5271 MDN1 AAA ATPase contai 99.8 9E-16 1.9E-20 180.3 32.6 148 590-769 890-1046(4600)
71 CHL00195 ycf46 Ycf46; Provisio 99.7 1E-16 2.2E-21 182.0 23.4 200 176-401 225-443 (489)
72 KOG0734 AAA+-type ATPase conta 99.7 2.8E-17 6E-22 177.2 16.4 203 176-406 301-525 (752)
73 TIGR02881 spore_V_K stage V sp 99.7 8.1E-17 1.8E-21 171.5 20.1 191 178-381 5-213 (261)
74 KOG0989 Replication factor C, 99.7 6.9E-17 1.5E-21 164.6 17.4 183 548-798 26-220 (346)
75 COG5271 MDN1 AAA ATPase contai 99.7 3.7E-16 8E-21 183.4 24.7 149 591-771 1546-1704(4600)
76 PRK03992 proteasome-activating 99.7 9.5E-17 2.1E-21 179.9 18.9 198 177-402 129-352 (389)
77 KOG0739 AAA+-type ATPase [Post 99.7 3.3E-17 7.1E-22 164.9 13.3 184 178-384 132-337 (439)
78 CHL00181 cbbX CbbX; Provisiona 99.7 5.6E-16 1.2E-20 165.8 21.3 186 180-378 24-228 (287)
79 PRK14956 DNA polymerase III su 99.7 1.5E-16 3.3E-21 177.2 17.3 206 550-816 10-227 (484)
80 COG1223 Predicted ATPase (AAA+ 99.7 1.9E-16 4.2E-21 156.7 15.8 201 557-827 120-339 (368)
81 KOG0735 AAA+-type ATPase [Post 99.7 1.8E-16 3.9E-21 176.3 16.1 182 179-383 667-871 (952)
82 COG2255 RuvB Holliday junction 99.7 7.5E-16 1.6E-20 155.4 18.9 186 552-798 20-213 (332)
83 PTZ00454 26S protease regulato 99.7 4.8E-16 1E-20 173.0 19.0 198 177-402 143-366 (398)
84 KOG2028 ATPase related to the 99.7 3.2E-16 6.8E-21 161.9 15.9 185 170-381 127-329 (554)
85 PRK07003 DNA polymerase III su 99.7 3.1E-16 6.8E-21 180.3 17.0 207 550-816 8-225 (830)
86 TIGR02880 cbbX_cfxQ probable R 99.7 2.2E-15 4.7E-20 161.6 22.0 186 180-378 23-227 (284)
87 PLN00020 ribulose bisphosphate 99.7 4.1E-16 9E-21 165.1 15.5 142 198-357 146-313 (413)
88 KOG0737 AAA+-type ATPase [Post 99.7 3.2E-16 6.8E-21 164.2 14.2 184 177-384 90-298 (386)
89 TIGR01241 FtsH_fam ATP-depende 99.7 1E-15 2.3E-20 177.8 19.7 198 176-401 52-274 (495)
90 PRK12323 DNA polymerase III su 99.7 5.7E-16 1.2E-20 176.1 16.6 204 551-814 9-228 (700)
91 PRK13765 ATP-dependent proteas 99.7 9.7E-16 2.1E-20 178.6 18.6 203 655-884 221-515 (637)
92 COG1221 PspF Transcriptional r 99.7 1.2E-16 2.6E-21 173.7 10.1 200 177-402 76-309 (403)
93 KOG0731 AAA+-type ATPase conta 99.7 8.4E-16 1.8E-20 177.0 17.1 199 176-401 308-532 (774)
94 TIGR01242 26Sp45 26S proteasom 99.7 2.2E-16 4.7E-21 176.5 12.2 207 556-821 120-345 (364)
95 PTZ00361 26 proteosome regulat 99.7 8.1E-16 1.8E-20 172.1 16.6 198 176-401 180-403 (438)
96 KOG0738 AAA+-type ATPase [Post 99.7 9.6E-16 2.1E-20 160.1 15.8 206 557-825 211-438 (491)
97 TIGR02640 gas_vesic_GvpN gas v 99.7 1.3E-15 2.7E-20 162.0 16.9 168 565-769 5-197 (262)
98 PRK14949 DNA polymerase III su 99.7 1.1E-15 2.3E-20 179.4 17.0 203 551-813 9-222 (944)
99 PLN03025 replication factor C 99.7 2.1E-15 4.5E-20 165.5 18.4 192 548-813 2-202 (319)
100 COG2255 RuvB Holliday junction 99.7 1.3E-15 2.8E-20 153.7 15.1 186 176-405 23-234 (332)
101 COG0464 SpoVK ATPases of the A 99.7 3.2E-15 6.9E-20 174.5 20.8 180 198-403 274-463 (494)
102 KOG0652 26S proteasome regulat 99.7 8E-16 1.7E-20 152.0 12.7 183 176-381 168-376 (424)
103 TIGR01243 CDC48 AAA family ATP 99.7 2.3E-15 4.9E-20 183.1 19.6 195 177-400 451-670 (733)
104 TIGR03689 pup_AAA proteasome A 99.7 1.6E-15 3.4E-20 171.9 16.7 174 176-356 179-379 (512)
105 KOG0728 26S proteasome regulat 99.7 1.6E-15 3.4E-20 149.1 14.4 167 181-365 149-341 (404)
106 PRK14960 DNA polymerase III su 99.7 2.6E-15 5.7E-20 171.2 18.3 206 551-816 8-224 (702)
107 CHL00176 ftsH cell division pr 99.6 2.7E-15 5.9E-20 175.8 18.5 197 176-400 180-401 (638)
108 PRK14958 DNA polymerase III su 99.6 3E-15 6.4E-20 172.0 18.3 206 551-816 9-225 (509)
109 PRK03992 proteasome-activating 99.6 2.8E-15 6E-20 168.1 17.0 207 556-821 129-354 (389)
110 KOG0740 AAA+-type ATPase [Post 99.6 3.7E-15 8.1E-20 162.3 17.2 195 178-400 152-369 (428)
111 PRK14962 DNA polymerase III su 99.6 3.8E-15 8.3E-20 169.3 17.6 207 550-816 6-223 (472)
112 PRK13342 recombination factor 99.6 3.3E-15 7.1E-20 169.6 17.1 187 176-400 9-202 (413)
113 PRK13342 recombination factor 99.6 5.4E-15 1.2E-19 167.8 18.8 191 550-816 4-201 (413)
114 KOG0727 26S proteasome regulat 99.6 1.2E-15 2.6E-20 150.1 11.2 145 197-359 186-343 (408)
115 PRK00080 ruvB Holliday junctio 99.6 1.2E-14 2.6E-19 160.2 20.6 200 551-814 18-225 (328)
116 TIGR02974 phageshock_pspF psp 99.6 1.3E-15 2.9E-20 166.4 12.8 191 181-396 1-224 (329)
117 PRK14964 DNA polymerase III su 99.6 3.4E-15 7.3E-20 168.6 16.4 206 551-816 6-222 (491)
118 KOG0729 26S proteasome regulat 99.6 1.6E-15 3.5E-20 150.3 11.9 163 177-357 175-363 (435)
119 TIGR00764 lon_rel lon-related 99.6 7.6E-15 1.7E-19 172.3 19.4 133 654-815 211-367 (608)
120 TIGR02639 ClpA ATP-dependent C 99.6 1.9E-13 4.2E-18 165.7 31.7 179 179-378 454-690 (731)
121 PRK07994 DNA polymerase III su 99.6 4.7E-15 1E-19 172.3 16.9 203 551-813 9-222 (647)
122 PRK13341 recombination factor 99.6 5.8E-15 1.3E-19 175.2 17.9 199 550-816 20-222 (725)
123 PRK14957 DNA polymerase III su 99.6 5.4E-15 1.2E-19 169.4 16.6 206 551-815 9-224 (546)
124 PRK14952 DNA polymerase III su 99.6 1.1E-14 2.4E-19 168.5 19.0 206 550-815 5-223 (584)
125 TIGR01242 26Sp45 26S proteasom 99.6 8E-15 1.7E-19 164.0 17.3 198 177-402 120-343 (364)
126 PRK14951 DNA polymerase III su 99.6 6.8E-15 1.5E-19 170.7 17.2 204 551-814 9-228 (618)
127 PRK14956 DNA polymerase III su 99.6 8.3E-15 1.8E-19 163.4 17.1 195 176-401 15-229 (484)
128 PRK14961 DNA polymerase III su 99.6 8.4E-15 1.8E-19 163.2 17.2 207 551-815 9-224 (363)
129 PRK08691 DNA polymerase III su 99.6 5.5E-15 1.2E-19 170.4 15.8 206 551-817 9-226 (709)
130 COG0542 clpA ATP-binding subun 99.6 4.2E-13 9.2E-18 156.3 31.2 177 179-378 491-733 (786)
131 PRK13341 recombination factor 99.6 5.9E-15 1.3E-19 175.1 16.2 193 176-400 25-223 (725)
132 PRK07764 DNA polymerase III su 99.6 1.1E-14 2.3E-19 174.9 17.9 207 550-816 7-226 (824)
133 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.4E-14 2.9E-19 178.2 18.8 179 198-404 1628-1859(2281)
134 KOG2170 ATPase of the AAA+ sup 99.6 1.6E-14 3.5E-19 146.9 16.1 223 552-797 76-318 (344)
135 KOG0734 AAA+-type ATPase conta 99.6 5.4E-15 1.2E-19 159.8 13.2 171 590-820 339-522 (752)
136 TIGR00635 ruvB Holliday juncti 99.6 1.2E-14 2.6E-19 159.2 16.4 181 177-401 2-208 (305)
137 PRK06645 DNA polymerase III su 99.6 1.6E-14 3.5E-19 164.7 17.8 207 550-816 13-234 (507)
138 TIGR00635 ruvB Holliday juncti 99.6 3.9E-14 8.4E-19 155.2 20.3 194 557-814 3-204 (305)
139 CHL00095 clpC Clp protease ATP 99.6 1.2E-12 2.6E-17 160.5 34.9 181 179-377 509-759 (821)
140 KOG0989 Replication factor C, 99.6 9.8E-15 2.1E-19 149.0 13.5 197 176-400 33-236 (346)
141 PRK11608 pspF phage shock prot 99.6 5.3E-15 1.1E-19 162.0 12.2 195 177-396 4-231 (326)
142 COG2812 DnaX DNA polymerase II 99.6 5.5E-15 1.2E-19 166.0 12.5 208 551-818 9-227 (515)
143 TIGR02329 propionate_PrpR prop 99.6 2.9E-15 6.3E-20 172.3 10.4 181 176-373 209-419 (526)
144 PRK12402 replication factor C 99.6 3.4E-14 7.3E-19 158.2 18.4 204 550-814 7-229 (337)
145 PRK07133 DNA polymerase III su 99.6 2.4E-14 5.2E-19 167.0 17.5 207 551-815 11-223 (725)
146 PRK15424 propionate catabolism 99.6 5.6E-15 1.2E-19 169.6 11.4 180 176-372 216-433 (538)
147 KOG0732 AAA+-type ATPase conta 99.6 2.4E-14 5.1E-19 169.3 16.9 202 176-399 262-486 (1080)
148 PRK11034 clpA ATP-dependent Cl 99.6 1.5E-12 3.3E-17 155.5 32.3 178 180-378 459-694 (758)
149 PLN00020 ribulose bisphosphate 99.6 6.4E-14 1.4E-18 148.7 18.3 186 586-826 146-366 (413)
150 PRK07003 DNA polymerase III su 99.6 2.1E-14 4.6E-19 165.3 15.7 195 176-401 13-227 (830)
151 PRK08451 DNA polymerase III su 99.6 3.5E-14 7.6E-19 161.8 17.3 206 550-816 6-223 (535)
152 PRK14963 DNA polymerase III su 99.6 4.5E-14 9.7E-19 162.0 18.2 206 550-815 6-221 (504)
153 PRK14965 DNA polymerase III su 99.6 2.5E-14 5.3E-19 167.7 16.4 204 551-814 9-223 (576)
154 PRK14959 DNA polymerase III su 99.6 3E-14 6.5E-19 164.0 16.1 203 551-813 9-222 (624)
155 PRK09111 DNA polymerase III su 99.6 3.7E-14 8.1E-19 165.1 16.8 207 551-815 17-237 (598)
156 PRK05563 DNA polymerase III su 99.6 6.6E-14 1.4E-18 163.3 18.9 205 551-815 9-224 (559)
157 TIGR02902 spore_lonB ATP-depen 99.6 1.5E-14 3.4E-19 167.9 13.6 201 176-401 62-311 (531)
158 PHA02244 ATPase-like protein 99.6 1.7E-13 3.6E-18 147.2 20.1 178 590-795 121-304 (383)
159 PRK14969 DNA polymerase III su 99.6 4.4E-14 9.6E-19 163.6 16.8 206 551-815 9-224 (527)
160 PRK00080 ruvB Holliday junctio 99.6 4.8E-14 1E-18 155.5 16.2 182 176-401 22-229 (328)
161 PRK05896 DNA polymerase III su 99.6 4.8E-14 1E-18 161.4 16.5 205 550-814 8-223 (605)
162 PHA02544 44 clamp loader, smal 99.6 1.1E-13 2.4E-18 152.4 18.8 194 550-813 13-211 (316)
163 PTZ00454 26S protease regulato 99.6 9.2E-14 2E-18 154.9 18.2 203 556-821 143-368 (398)
164 COG0465 HflB ATP-dependent Zn 99.6 3.6E-14 7.7E-19 161.2 14.8 197 176-400 147-368 (596)
165 PRK14960 DNA polymerase III su 99.6 5.8E-14 1.2E-18 160.4 16.4 195 176-401 12-226 (702)
166 TIGR03689 pup_AAA proteasome A 99.6 1E-13 2.3E-18 157.1 18.5 166 557-771 181-379 (512)
167 KOG0727 26S proteasome regulat 99.6 3.5E-14 7.7E-19 139.9 12.6 172 587-818 188-375 (408)
168 PRK14953 DNA polymerase III su 99.5 8.1E-14 1.8E-18 159.4 17.1 205 551-815 9-224 (486)
169 PRK12323 DNA polymerase III su 99.5 5.5E-14 1.2E-18 160.1 15.3 195 176-401 13-232 (700)
170 KOG0726 26S proteasome regulat 99.5 1.3E-14 2.9E-19 145.8 8.7 161 176-354 182-368 (440)
171 TIGR01650 PD_CobS cobaltochela 99.5 9.1E-14 2E-18 148.0 15.6 157 590-769 66-232 (327)
172 PRK05022 anaerobic nitric oxid 99.5 2.3E-14 4.9E-19 166.9 12.1 194 177-395 185-410 (509)
173 PRK13531 regulatory ATPase Rav 99.5 7E-14 1.5E-18 155.3 15.1 201 554-797 16-235 (498)
174 PRK14962 DNA polymerase III su 99.5 1.2E-13 2.7E-18 157.1 17.5 194 176-400 11-224 (472)
175 PRK06305 DNA polymerase III su 99.5 9.6E-14 2.1E-18 157.9 16.4 205 551-815 10-226 (451)
176 PTZ00361 26 proteosome regulat 99.5 1.1E-13 2.4E-18 155.0 16.6 205 554-820 179-405 (438)
177 TIGR01817 nifA Nif-specific re 99.5 1.7E-14 3.6E-19 169.6 10.5 195 176-395 193-418 (534)
178 PLN03025 replication factor C 99.5 7.3E-14 1.6E-18 153.3 14.9 185 176-396 10-202 (319)
179 PF00158 Sigma54_activat: Sigm 99.5 5.9E-15 1.3E-19 144.9 5.2 122 181-319 1-145 (168)
180 PRK14949 DNA polymerase III su 99.5 9.8E-14 2.1E-18 163.1 16.2 194 176-400 13-226 (944)
181 CHL00176 ftsH cell division pr 99.5 1.7E-13 3.8E-18 160.7 18.3 169 589-817 217-401 (638)
182 KOG0728 26S proteasome regulat 99.5 7.2E-14 1.6E-18 137.6 12.5 174 550-772 139-333 (404)
183 PRK10820 DNA-binding transcrip 99.5 3.7E-14 8E-19 165.0 11.5 194 176-394 201-426 (520)
184 PRK08903 DnaA regulatory inact 99.5 4.4E-13 9.5E-18 140.1 18.2 158 590-815 44-203 (227)
185 PRK14954 DNA polymerase III su 99.5 2.2E-13 4.8E-18 158.8 17.5 203 551-813 9-230 (620)
186 PRK14955 DNA polymerase III su 99.5 2E-13 4.3E-18 154.0 16.6 205 550-814 8-231 (397)
187 KOG2028 ATPase related to the 99.5 1E-13 2.2E-18 143.6 12.6 202 546-813 125-338 (554)
188 TIGR03420 DnaA_homol_Hda DnaA 99.5 3.5E-13 7.6E-18 140.9 16.7 164 589-816 39-206 (226)
189 PRK07994 DNA polymerase III su 99.5 2.5E-13 5.3E-18 158.0 16.7 195 176-401 13-227 (647)
190 PRK06647 DNA polymerase III su 99.5 4E-13 8.7E-18 156.0 18.2 205 551-815 9-224 (563)
191 COG1224 TIP49 DNA helicase TIP 99.5 3.2E-13 6.9E-18 140.1 15.2 102 662-799 293-394 (450)
192 PRK04195 replication factor C 99.5 3.9E-13 8.4E-18 155.7 17.8 193 550-812 6-203 (482)
193 TIGR01241 FtsH_fam ATP-depende 99.5 2.9E-13 6.3E-18 157.4 16.6 166 556-771 53-239 (495)
194 PF07728 AAA_5: AAA domain (dy 99.5 7E-14 1.5E-18 134.2 9.4 128 590-748 1-139 (139)
195 PRK14964 DNA polymerase III su 99.5 6.2E-13 1.4E-17 150.4 18.3 196 176-402 10-225 (491)
196 PF00004 AAA: ATPase family as 99.5 2.6E-13 5.7E-18 128.8 12.7 120 203-339 1-130 (132)
197 KOG0651 26S proteasome regulat 99.5 8.1E-14 1.8E-18 141.9 9.6 162 177-356 130-317 (388)
198 COG0466 Lon ATP-dependent Lon 99.5 4.9E-13 1.1E-17 151.0 16.6 183 180-383 324-542 (782)
199 PRK10733 hflB ATP-dependent me 99.5 5E-13 1.1E-17 158.9 17.6 198 177-402 150-372 (644)
200 PRK07940 DNA polymerase III su 99.5 5.7E-13 1.2E-17 148.2 16.7 171 557-767 4-186 (394)
201 PRK13407 bchI magnesium chelat 99.5 1.3E-12 2.7E-17 141.8 18.8 232 557-827 7-290 (334)
202 PRK08084 DNA replication initi 99.5 1.2E-12 2.7E-17 136.7 18.2 180 177-383 20-204 (235)
203 TIGR00763 lon ATP-dependent pr 99.5 5E-13 1.1E-17 162.9 17.3 178 180-378 321-534 (775)
204 PRK15429 formate hydrogenlyase 99.5 5.3E-13 1.2E-17 161.4 17.5 196 176-396 373-600 (686)
205 PF14532 Sigma54_activ_2: Sigm 99.5 6.7E-14 1.5E-18 133.9 7.6 137 561-757 1-138 (138)
206 PRK14958 DNA polymerase III su 99.5 4E-13 8.7E-18 154.6 15.3 195 176-401 13-227 (509)
207 PRK00440 rfc replication facto 99.5 1.3E-12 2.9E-17 144.2 18.9 191 550-814 9-206 (319)
208 PF01078 Mg_chelatase: Magnesi 99.5 3.3E-14 7.2E-19 141.0 5.3 183 559-761 4-206 (206)
209 PRK14957 DNA polymerase III su 99.5 9.6E-13 2.1E-17 151.0 18.0 195 176-401 13-227 (546)
210 CHL00081 chlI Mg-protoporyphyr 99.5 1.2E-12 2.6E-17 142.0 17.6 221 557-812 16-295 (350)
211 TIGR02397 dnaX_nterm DNA polym 99.5 9.6E-13 2.1E-17 147.6 17.5 205 551-816 7-223 (355)
212 PRK14971 DNA polymerase III su 99.5 1E-12 2.2E-17 154.5 17.7 205 550-814 9-225 (614)
213 PF07726 AAA_3: ATPase family 99.5 9.9E-14 2.2E-18 125.8 6.9 126 590-748 1-129 (131)
214 PHA02544 44 clamp loader, smal 99.5 9.5E-13 2.1E-17 145.0 16.1 175 177-378 19-199 (316)
215 TIGR02442 Cob-chelat-sub cobal 99.5 1.5E-12 3.3E-17 154.8 18.8 214 558-812 4-277 (633)
216 PRK14970 DNA polymerase III su 99.5 1.7E-12 3.6E-17 145.8 18.3 202 550-816 9-214 (367)
217 PRK14950 DNA polymerase III su 99.5 9.7E-13 2.1E-17 155.2 17.0 207 550-814 8-224 (585)
218 TIGR03346 chaperone_ClpB ATP-d 99.5 4.4E-11 9.5E-16 147.3 32.1 182 179-378 565-804 (852)
219 PRK06645 DNA polymerase III su 99.5 1.7E-12 3.6E-17 148.3 18.1 196 176-402 18-237 (507)
220 COG0714 MoxR-like ATPases [Gen 99.4 3.3E-13 7.2E-18 148.8 11.9 159 560-761 26-193 (329)
221 PRK14952 DNA polymerase III su 99.4 2.1E-12 4.5E-17 149.7 18.7 195 176-401 10-226 (584)
222 KOG2004 Mitochondrial ATP-depe 99.4 9E-13 1.9E-17 147.7 14.9 179 179-378 411-625 (906)
223 PRK14961 DNA polymerase III su 99.4 1.2E-12 2.6E-17 145.9 15.9 195 176-401 13-227 (363)
224 PRK14948 DNA polymerase III su 99.4 1.4E-12 3E-17 153.3 17.1 205 550-814 8-225 (620)
225 PRK14951 DNA polymerase III su 99.4 1E-12 2.2E-17 152.7 15.5 195 176-401 13-232 (618)
226 CHL00206 ycf2 Ycf2; Provisiona 99.4 8E-13 1.7E-17 162.9 15.1 191 586-820 1628-1858(2281)
227 PRK07764 DNA polymerase III su 99.4 4.8E-12 1E-16 152.3 21.4 195 176-401 12-228 (824)
228 TIGR02640 gas_vesic_GvpN gas v 99.4 1E-12 2.2E-17 139.8 13.9 170 185-381 4-215 (262)
229 KOG0731 AAA+-type ATPase conta 99.4 1.1E-12 2.5E-17 151.4 15.0 166 558-771 311-496 (774)
230 TIGR00368 Mg chelatase-related 99.4 5.6E-12 1.2E-16 144.2 20.3 247 557-822 191-480 (499)
231 PRK14959 DNA polymerase III su 99.4 2.3E-12 4.9E-17 148.6 17.0 196 176-399 13-225 (624)
232 KOG0742 AAA+-type ATPase [Post 99.4 1.2E-12 2.5E-17 137.6 13.3 166 176-360 352-533 (630)
233 TIGR02903 spore_lon_C ATP-depe 99.4 6.4E-13 1.4E-17 156.8 12.9 201 176-400 151-400 (615)
234 PF06068 TIP49: TIP49 C-termin 99.4 1E-12 2.2E-17 139.4 12.9 102 662-799 280-381 (398)
235 PRK11388 DNA-binding transcrip 99.4 4.8E-13 1E-17 160.9 11.8 197 176-396 322-545 (638)
236 PRK04195 replication factor C 99.4 1.4E-12 3E-17 151.1 14.5 176 177-383 12-197 (482)
237 PRK06893 DNA replication initi 99.4 4E-12 8.6E-17 132.5 16.5 162 590-815 41-207 (229)
238 PTZ00112 origin recognition co 99.4 4.9E-12 1.1E-16 146.2 18.1 205 179-400 755-987 (1164)
239 KOG0739 AAA+-type ATPase [Post 99.4 7.8E-13 1.7E-17 133.7 10.1 207 557-823 132-354 (439)
240 COG3283 TyrR Transcriptional r 99.4 1.3E-12 2.8E-17 135.4 11.8 189 176-396 201-423 (511)
241 PRK08691 DNA polymerase III su 99.4 2.2E-12 4.8E-17 149.2 14.8 195 176-401 13-227 (709)
242 KOG0742 AAA+-type ATPase [Post 99.4 7.2E-10 1.6E-14 116.9 31.9 161 565-774 361-532 (630)
243 PRK12402 replication factor C 99.4 3E-12 6.4E-17 142.5 15.5 182 176-379 12-217 (337)
244 TIGR02928 orc1/cdc6 family rep 99.4 1.2E-11 2.5E-16 139.4 20.2 211 179-402 15-254 (365)
245 PRK14963 DNA polymerase III su 99.4 4.6E-12 1E-16 145.5 16.8 194 176-400 11-223 (504)
246 PRK08084 DNA replication initi 99.4 7.2E-12 1.6E-16 131.0 16.8 163 590-815 47-213 (235)
247 TIGR02030 BchI-ChlI magnesium 99.4 5.5E-12 1.2E-16 137.2 16.4 230 558-827 4-293 (337)
248 KOG0991 Replication factor C, 99.4 2.4E-12 5.3E-17 125.9 11.6 176 549-796 18-202 (333)
249 PRK08451 DNA polymerase III su 99.4 7.5E-12 1.6E-16 142.9 17.6 196 176-402 11-226 (535)
250 PRK14969 DNA polymerase III su 99.4 3.7E-12 8.1E-17 147.6 15.3 195 176-401 13-227 (527)
251 TIGR02031 BchD-ChlD magnesium 99.4 5.6E-12 1.2E-16 148.1 16.8 184 588-800 16-218 (589)
252 PRK11331 5-methylcytosine-spec 99.4 6E-12 1.3E-16 138.9 15.9 149 590-762 196-364 (459)
253 PF00004 AAA: ATPase family as 99.4 1.1E-12 2.3E-17 124.5 8.9 115 591-755 1-131 (132)
254 PRK05896 DNA polymerase III su 99.4 6.4E-12 1.4E-16 144.1 16.7 195 176-401 13-227 (605)
255 KOG0744 AAA+-type ATPase [Post 99.4 3.5E-12 7.6E-17 130.7 12.5 145 203-358 180-343 (423)
256 PRK05563 DNA polymerase III su 99.4 9.6E-12 2.1E-16 145.3 17.6 195 176-401 13-227 (559)
257 PRK10787 DNA-binding ATP-depen 99.4 9.5E-12 2.1E-16 150.0 17.7 186 170-377 312-534 (784)
258 PRK05642 DNA replication initi 99.3 2.9E-11 6.2E-16 126.3 17.8 178 177-382 17-202 (234)
259 PF05673 DUF815: Protein of un 99.3 4.9E-11 1.1E-15 120.8 18.7 190 178-398 26-245 (249)
260 PRK05342 clpX ATP-dependent pr 99.3 2.9E-11 6.3E-16 135.2 18.8 186 181-378 73-357 (412)
261 PRK00411 cdc6 cell division co 99.3 7.6E-11 1.6E-15 134.2 22.7 207 179-401 30-261 (394)
262 KOG0729 26S proteasome regulat 99.3 1.4E-12 3.1E-17 129.6 7.4 167 590-816 213-395 (435)
263 PRK09111 DNA polymerase III su 99.3 1.7E-11 3.7E-16 143.0 17.3 195 176-401 21-240 (598)
264 PRK05642 DNA replication initi 99.3 1.3E-11 2.9E-16 128.8 14.9 164 589-816 46-213 (234)
265 PTZ00112 origin recognition co 99.3 1.6E-11 3.4E-16 142.1 16.6 213 559-816 756-986 (1164)
266 PRK08727 hypothetical protein; 99.3 2.2E-11 4.7E-16 127.2 16.4 162 590-816 43-209 (233)
267 PRK07133 DNA polymerase III su 99.3 2.4E-11 5.3E-16 142.1 18.2 195 176-401 15-226 (725)
268 PRK09112 DNA polymerase III su 99.3 1.4E-11 3E-16 135.4 14.9 197 553-812 18-241 (351)
269 KOG0744 AAA+-type ATPase [Post 99.3 2.7E-12 5.8E-17 131.6 8.5 143 590-774 179-344 (423)
270 PRK14965 DNA polymerase III su 99.3 1.5E-11 3.2E-16 144.4 16.1 196 176-402 13-228 (576)
271 PRK06893 DNA replication initi 99.3 2.9E-11 6.4E-16 125.9 16.6 179 176-382 13-197 (229)
272 PRK10733 hflB ATP-dependent me 99.3 1.5E-11 3.2E-16 146.5 15.6 133 590-772 187-337 (644)
273 PRK14955 DNA polymerase III su 99.3 1.6E-11 3.5E-16 138.5 15.1 196 176-402 13-236 (397)
274 PRK00440 rfc replication facto 99.3 1.5E-11 3.3E-16 135.7 14.7 192 177-400 15-209 (319)
275 KOG0726 26S proteasome regulat 99.3 3E-12 6.5E-17 129.0 8.1 170 553-771 180-370 (440)
276 KOG0652 26S proteasome regulat 99.3 1.2E-11 2.5E-16 122.9 12.0 165 556-771 169-356 (424)
277 PRK06647 DNA polymerase III su 99.3 2.6E-11 5.6E-16 141.0 17.1 195 176-401 13-227 (563)
278 TIGR03420 DnaA_homol_Hda DnaA 99.3 7.5E-11 1.6E-15 123.3 19.0 189 178-400 14-207 (226)
279 KOG0737 AAA+-type ATPase [Post 99.3 1.5E-11 3.2E-16 129.5 13.1 182 586-827 125-319 (386)
280 PRK06305 DNA polymerase III su 99.3 5.5E-11 1.2E-15 135.5 18.9 195 176-401 14-229 (451)
281 PRK10923 glnG nitrogen regulat 99.3 2.9E-12 6.3E-17 149.1 8.7 185 177-378 136-352 (469)
282 COG0606 Predicted ATPase with 99.3 1.1E-11 2.3E-16 135.3 11.7 184 556-761 177-383 (490)
283 PRK05201 hslU ATP-dependent pr 99.3 5.7E-11 1.2E-15 129.7 17.3 106 274-380 251-382 (443)
284 PRK14953 DNA polymerase III su 99.3 5.2E-11 1.1E-15 136.4 18.0 195 176-401 13-227 (486)
285 TIGR02915 PEP_resp_reg putativ 99.3 5E-12 1.1E-16 146.2 9.8 184 178-378 138-353 (445)
286 KOG0991 Replication factor C, 99.3 9.3E-12 2E-16 121.8 9.9 177 177-383 25-209 (333)
287 PRK07399 DNA polymerase III su 99.3 2.5E-11 5.5E-16 131.5 14.5 167 557-770 3-195 (314)
288 PRK00149 dnaA chromosomal repl 99.3 1.8E-10 3.9E-15 132.6 22.4 187 176-380 119-314 (450)
289 TIGR00678 holB DNA polymerase 99.3 4.6E-11 1E-15 120.9 15.3 155 589-797 15-180 (188)
290 TIGR00390 hslU ATP-dependent p 99.3 6.3E-11 1.4E-15 129.3 17.2 106 274-380 249-380 (441)
291 smart00350 MCM minichromosome 99.3 4.1E-11 8.9E-16 139.3 16.9 211 589-825 237-488 (509)
292 PF00308 Bac_DnaA: Bacterial d 99.3 2.6E-11 5.6E-16 125.1 13.5 172 590-817 36-214 (219)
293 TIGR02928 orc1/cdc6 family rep 99.3 5.5E-11 1.2E-15 133.8 17.4 215 559-818 16-253 (365)
294 TIGR03345 VI_ClpV1 type VI sec 99.3 2.6E-11 5.6E-16 148.0 15.6 180 558-798 187-386 (852)
295 PRK12422 chromosomal replicati 99.3 3.7E-11 7.9E-16 136.3 15.6 172 589-816 142-318 (445)
296 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.3E-15 122.1 17.9 168 177-378 16-189 (227)
297 PRK14954 DNA polymerase III su 99.3 5.3E-11 1.1E-15 139.1 17.0 196 176-402 13-236 (620)
298 COG0465 HflB ATP-dependent Zn 99.3 2.7E-11 5.8E-16 138.0 14.2 134 590-771 185-334 (596)
299 TIGR02397 dnaX_nterm DNA polym 99.3 1E-10 2.2E-15 131.2 18.6 195 176-401 11-225 (355)
300 TIGR00362 DnaA chromosomal rep 99.3 2.3E-11 5E-16 138.3 13.4 174 589-817 137-316 (405)
301 PRK09862 putative ATP-dependen 99.3 8.3E-11 1.8E-15 133.8 17.4 165 589-760 211-391 (506)
302 PRK00411 cdc6 cell division co 99.3 1.2E-10 2.6E-15 132.5 18.6 212 559-815 31-258 (394)
303 smart00763 AAA_PrkA PrkA AAA d 99.3 9.4E-11 2E-15 126.4 16.4 208 559-797 52-348 (361)
304 PRK08727 hypothetical protein; 99.3 2.4E-10 5.3E-15 119.3 19.1 178 177-382 17-198 (233)
305 COG1474 CDC6 Cdc6-related prot 99.3 2.9E-09 6.2E-14 117.6 28.4 209 180-405 18-248 (366)
306 TIGR00362 DnaA chromosomal rep 99.3 2.8E-10 6.1E-15 129.5 21.2 186 176-379 107-301 (405)
307 PRK07940 DNA polymerase III su 99.3 7E-11 1.5E-15 131.5 15.8 174 178-381 4-206 (394)
308 PTZ00111 DNA replication licen 99.3 1.2E-10 2.6E-15 138.0 18.2 160 587-770 491-657 (915)
309 PF00308 Bac_DnaA: Bacterial d 99.3 6.2E-11 1.3E-15 122.3 14.0 201 177-401 6-215 (219)
310 PRK07471 DNA polymerase III su 99.3 2.8E-11 6.1E-16 133.7 12.1 170 553-770 14-213 (365)
311 PRK14087 dnaA chromosomal repl 99.3 5.6E-11 1.2E-15 135.4 14.9 175 590-816 143-324 (450)
312 KOG1942 DNA helicase, TBP-inte 99.3 7.7E-11 1.7E-15 119.0 14.0 108 663-812 299-408 (456)
313 PRK14087 dnaA chromosomal repl 99.3 6.5E-10 1.4E-14 126.7 23.4 200 177-398 113-323 (450)
314 PRK14948 DNA polymerase III su 99.2 1.3E-10 2.9E-15 136.6 18.0 193 176-399 13-227 (620)
315 COG4650 RtcR Sigma54-dependent 99.2 1.3E-11 2.8E-16 124.5 8.0 198 590-815 210-422 (531)
316 PRK00149 dnaA chromosomal repl 99.2 4.9E-11 1.1E-15 137.3 14.0 173 589-816 149-327 (450)
317 PRK14970 DNA polymerase III su 99.2 1.8E-10 3.9E-15 129.5 18.0 195 176-401 14-216 (367)
318 PF13177 DNA_pol3_delta2: DNA 99.2 1.6E-11 3.4E-16 120.4 7.9 151 562-758 1-162 (162)
319 COG3284 AcoR Transcriptional a 99.2 1E-11 2.3E-16 139.7 7.4 185 182-395 316-530 (606)
320 TIGR00382 clpX endopeptidase C 99.2 2.2E-10 4.8E-15 127.2 17.0 186 181-378 79-363 (413)
321 PRK13531 regulatory ATPase Rav 99.2 5.7E-10 1.2E-14 124.4 20.2 209 181-414 22-278 (498)
322 PRK08058 DNA polymerase III su 99.2 1.1E-10 2.4E-15 128.2 14.5 164 557-768 4-180 (329)
323 PRK14088 dnaA chromosomal repl 99.2 7.3E-11 1.6E-15 134.3 13.5 173 590-816 132-310 (440)
324 PRK05564 DNA polymerase III su 99.2 1.3E-10 2.8E-15 127.5 14.9 158 557-769 3-164 (313)
325 PRK15115 response regulator Gl 99.2 1.9E-11 4.1E-16 141.4 8.8 191 180-395 135-357 (444)
326 PRK14086 dnaA chromosomal repl 99.2 3.3E-10 7.1E-15 130.3 18.4 186 176-380 285-480 (617)
327 PRK14971 DNA polymerase III su 99.2 1.6E-10 3.4E-15 136.1 16.2 195 176-401 14-229 (614)
328 PRK14088 dnaA chromosomal repl 99.2 3.9E-10 8.4E-15 128.4 18.9 187 177-380 103-297 (440)
329 KOG0743 AAA+-type ATPase [Post 99.2 1.2E-10 2.6E-15 126.3 13.1 152 590-797 237-416 (457)
330 PRK14950 DNA polymerase III su 99.2 4E-10 8.6E-15 133.2 18.8 194 176-400 13-227 (585)
331 PRK14086 dnaA chromosomal repl 99.2 1.7E-10 3.7E-15 132.6 14.6 172 590-816 316-493 (617)
332 PRK12422 chromosomal replicati 99.2 5.7E-10 1.2E-14 126.7 18.7 184 176-380 108-305 (445)
333 COG2812 DnaX DNA polymerase II 99.2 9.2E-11 2E-15 132.3 12.1 201 176-402 13-228 (515)
334 TIGR01818 ntrC nitrogen regula 99.2 3.7E-11 8.1E-16 139.7 9.2 183 179-378 134-348 (463)
335 KOG2035 Replication factor C, 99.2 3.8E-10 8.3E-15 113.7 14.6 170 590-812 36-226 (351)
336 cd00009 AAA The AAA+ (ATPases 99.2 1.5E-10 3.3E-15 111.6 11.6 132 589-756 20-151 (151)
337 PRK11361 acetoacetate metaboli 99.2 4.1E-11 8.9E-16 139.2 8.8 194 178-396 142-367 (457)
338 PF14532 Sigma54_activ_2: Sigm 99.2 1E-11 2.2E-16 118.8 2.5 130 182-343 1-137 (138)
339 PF10431 ClpB_D2-small: C-term 99.2 6.9E-11 1.5E-15 101.4 7.2 81 757-837 1-81 (81)
340 PRK04132 replication factor C 99.2 2.1E-10 4.5E-15 137.1 13.7 164 587-815 563-735 (846)
341 PRK06620 hypothetical protein; 99.2 6.1E-10 1.3E-14 114.3 15.2 136 201-382 45-183 (214)
342 PRK10865 protein disaggregatio 99.1 5.8E-10 1.2E-14 136.8 17.0 182 179-378 568-807 (857)
343 PRK06620 hypothetical protein; 99.1 8.6E-10 1.9E-14 113.2 15.7 145 590-815 46-193 (214)
344 COG2607 Predicted ATPase (AAA+ 99.1 2.4E-09 5.3E-14 106.1 17.9 164 180-372 61-252 (287)
345 COG1239 ChlI Mg-chelatase subu 99.1 6.6E-10 1.4E-14 119.9 14.7 157 587-771 37-233 (423)
346 PF05673 DUF815: Protein of un 99.1 3.5E-09 7.6E-14 107.5 19.0 182 553-771 22-208 (249)
347 PRK09087 hypothetical protein; 99.1 6.2E-10 1.3E-14 115.3 13.7 152 590-815 46-199 (226)
348 TIGR01650 PD_CobS cobaltochela 99.1 2E-10 4.3E-15 122.7 10.1 148 185-354 51-232 (327)
349 COG1474 CDC6 Cdc6-related prot 99.1 8.6E-10 1.9E-14 121.7 15.3 213 560-816 19-242 (366)
350 PRK13407 bchI magnesium chelat 99.1 2.3E-10 4.9E-15 124.3 10.5 159 178-353 7-214 (334)
351 CHL00081 chlI Mg-protoporyphyr 99.1 4.9E-10 1.1E-14 121.8 13.0 161 177-353 15-230 (350)
352 PHA02244 ATPase-like protein 99.1 2.2E-10 4.8E-15 123.4 10.1 142 180-344 97-263 (383)
353 PRK08769 DNA polymerase III su 99.1 4E-10 8.6E-15 121.6 12.0 159 564-768 10-183 (319)
354 PRK05707 DNA polymerase III su 99.1 2.7E-10 5.8E-15 124.2 10.7 142 589-769 23-177 (328)
355 KOG0741 AAA+-type ATPase [Post 99.1 1.8E-10 4E-15 125.1 8.2 180 590-827 258-463 (744)
356 PRK09087 hypothetical protein; 99.1 3.5E-09 7.6E-14 109.6 17.4 166 177-382 19-189 (226)
357 PRK06871 DNA polymerase III su 99.1 1.3E-09 2.8E-14 117.8 14.5 158 565-769 9-178 (325)
358 PRK10365 transcriptional regul 99.1 2.3E-10 5E-15 132.3 9.2 192 180-396 140-363 (441)
359 PRK09112 DNA polymerase III su 99.1 3.2E-09 6.8E-14 116.9 17.3 196 177-398 21-244 (351)
360 TIGR02653 Lon_rel_chp conserve 99.1 2.5E-09 5.5E-14 121.8 16.8 136 532-711 177-319 (675)
361 KOG2680 DNA helicase TIP49, TB 99.1 1.9E-09 4.2E-14 109.4 14.1 102 662-799 290-391 (454)
362 TIGR02030 BchI-ChlI magnesium 99.1 6.9E-10 1.5E-14 120.9 11.8 163 178-353 3-217 (337)
363 KOG0740 AAA+-type ATPase [Post 99.1 9.3E-10 2E-14 120.5 12.7 179 586-823 184-375 (428)
364 COG1219 ClpX ATP-dependent pro 99.1 9.1E-09 2E-13 105.9 18.7 170 199-380 96-348 (408)
365 COG0470 HolB ATPase involved i 99.0 1.1E-09 2.4E-14 121.2 12.4 143 560-759 3-170 (325)
366 KOG0651 26S proteasome regulat 99.0 3.9E-10 8.5E-15 115.4 7.6 131 586-764 164-310 (388)
367 PRK06090 DNA polymerase III su 99.0 1.4E-09 2.9E-14 117.4 12.1 154 565-768 10-178 (319)
368 KOG0732 AAA+-type ATPase conta 99.0 1.4E-09 3E-14 129.5 12.9 180 587-822 298-492 (1080)
369 COG0593 DnaA ATPase involved i 99.0 2.8E-08 6E-13 109.3 22.1 161 199-380 112-278 (408)
370 cd00009 AAA The AAA+ (ATPases 99.0 1.4E-09 3.1E-14 104.7 10.9 140 182-335 1-144 (151)
371 PRK06964 DNA polymerase III su 99.0 1.1E-09 2.3E-14 119.3 10.5 142 589-768 22-202 (342)
372 PRK07993 DNA polymerase III su 99.0 3E-09 6.5E-14 116.4 13.2 157 565-768 9-178 (334)
373 COG0714 MoxR-like ATPases [Gen 99.0 1.3E-09 2.8E-14 120.3 10.2 149 181-349 26-196 (329)
374 TIGR00678 holB DNA polymerase 99.0 6.9E-09 1.5E-13 105.0 14.2 160 190-380 3-183 (188)
375 PRK07471 DNA polymerase III su 99.0 1.2E-08 2.6E-13 112.9 16.3 193 177-396 17-240 (365)
376 TIGR00764 lon_rel lon-related 99.0 8.2E-09 1.8E-13 121.7 15.8 121 269-401 215-370 (608)
377 PF07724 AAA_2: AAA domain (Cd 99.0 1.8E-09 3.8E-14 106.6 8.5 112 199-318 2-130 (171)
378 KOG0745 Putative ATP-dependent 98.9 2E-08 4.2E-13 107.4 16.1 95 199-305 225-330 (564)
379 PF05621 TniB: Bacterial TniB 98.9 6.2E-08 1.3E-12 101.7 19.6 206 187-402 45-269 (302)
380 PRK12377 putative replication 98.9 2.1E-09 4.5E-14 112.1 8.5 106 589-715 102-210 (248)
381 TIGR03015 pepcterm_ATPase puta 98.9 4.2E-08 9E-13 105.5 18.9 191 589-819 44-246 (269)
382 PRK04132 replication factor C 98.9 6.4E-09 1.4E-13 124.5 13.6 163 202-400 566-737 (846)
383 PRK08116 hypothetical protein; 98.9 6.7E-09 1.5E-13 110.4 12.2 128 590-757 116-249 (268)
384 TIGR02442 Cob-chelat-sub cobal 98.9 8.8E-09 1.9E-13 122.8 14.5 160 178-353 3-212 (633)
385 TIGR00602 rad24 checkpoint pro 98.9 1E-08 2.2E-13 119.9 14.4 214 176-400 81-329 (637)
386 PRK05564 DNA polymerase III su 98.9 2.3E-08 5.1E-13 109.6 16.5 172 177-378 2-180 (313)
387 PTZ00111 DNA replication licen 98.9 4.5E-09 9.8E-14 124.9 10.8 162 180-357 451-659 (915)
388 smart00350 MCM minichromosome 98.9 4.7E-09 1E-13 122.1 10.8 201 180-403 204-454 (509)
389 PF01637 Arch_ATPase: Archaeal 98.9 4.1E-09 8.8E-14 110.5 9.3 188 181-381 1-227 (234)
390 PRK06835 DNA replication prote 98.9 3.8E-08 8.3E-13 107.1 17.1 122 589-750 184-307 (329)
391 PRK11331 5-methylcytosine-spec 98.9 1.2E-08 2.6E-13 113.1 13.2 158 178-341 174-357 (459)
392 PRK05917 DNA polymerase III su 98.9 1.6E-08 3.5E-13 106.8 13.6 142 566-758 5-155 (290)
393 COG0593 DnaA ATPase involved i 98.9 2E-08 4.4E-13 110.3 14.5 175 587-817 112-292 (408)
394 PF07728 AAA_5: AAA domain (dy 98.9 1.2E-09 2.6E-14 104.7 4.3 111 202-334 1-139 (139)
395 PRK08699 DNA polymerase III su 98.9 8.5E-09 1.8E-13 112.4 11.4 142 589-768 22-183 (325)
396 KOG0990 Replication factor C, 98.9 2.5E-08 5.5E-13 103.2 13.4 195 176-402 38-240 (360)
397 KOG0990 Replication factor C, 98.9 1.2E-08 2.6E-13 105.6 10.7 178 550-796 33-220 (360)
398 PF12775 AAA_7: P-loop contain 98.9 1E-08 2.3E-13 109.0 10.5 156 590-774 35-197 (272)
399 COG0470 HolB ATPase involved i 98.8 7.6E-08 1.6E-12 106.5 16.8 148 180-344 2-170 (325)
400 PF07726 AAA_3: ATPase family 98.8 1.6E-10 3.5E-15 105.1 -3.7 108 202-335 1-130 (131)
401 TIGR00602 rad24 checkpoint pro 98.8 5E-08 1.1E-12 114.2 15.2 227 550-815 76-327 (637)
402 PRK13406 bchD magnesium chelat 98.8 4.2E-08 9.2E-13 114.4 14.2 190 588-812 25-223 (584)
403 KOG2035 Replication factor C, 98.8 2.5E-07 5.4E-12 93.8 17.4 201 177-400 11-234 (351)
404 PRK06526 transposase; Provisio 98.8 3.9E-09 8.5E-14 110.9 4.7 105 590-717 100-207 (254)
405 PF02861 Clp_N: Clp amino term 98.8 7.1E-09 1.5E-13 81.1 4.8 53 17-71 1-53 (53)
406 PRK08058 DNA polymerase III su 98.8 3.8E-08 8.2E-13 108.2 12.0 151 179-351 5-178 (329)
407 PRK15455 PrkA family serine pr 98.8 1E-07 2.3E-12 107.6 15.5 206 558-796 76-366 (644)
408 PF06309 Torsin: Torsin; Inte 98.8 8.7E-09 1.9E-13 93.7 5.6 65 549-615 16-80 (127)
409 COG1241 MCM2 Predicted ATPase 98.8 5E-08 1.1E-12 113.5 13.2 219 588-831 319-582 (682)
410 PF01078 Mg_chelatase: Magnesi 98.8 5.7E-09 1.2E-13 104.0 4.7 122 178-319 2-160 (206)
411 COG4650 RtcR Sigma54-dependent 98.8 6.4E-09 1.4E-13 105.3 5.1 152 181-349 186-366 (531)
412 TIGR03015 pepcterm_ATPase puta 98.8 5E-07 1.1E-11 97.1 20.2 197 186-401 26-245 (269)
413 PF01695 IstB_IS21: IstB-like 98.8 6.4E-09 1.4E-13 103.5 4.7 106 590-717 49-156 (178)
414 PRK13765 ATP-dependent proteas 98.8 4.7E-08 1E-12 114.8 12.5 123 269-403 224-381 (637)
415 smart00382 AAA ATPases associa 98.7 3.6E-08 7.8E-13 94.1 9.5 118 590-710 4-125 (148)
416 PF06068 TIP49: TIP49 C-termin 98.7 2.7E-07 5.9E-12 98.6 16.8 94 274-379 280-381 (398)
417 COG1220 HslU ATP-dependent pro 98.7 2.6E-07 5.5E-12 96.1 15.7 104 274-378 252-381 (444)
418 KOG1808 AAA ATPase containing 98.7 2.1E-07 4.6E-12 117.2 17.7 150 591-768 719-887 (1856)
419 TIGR02031 BchD-ChlD magnesium 98.7 7E-08 1.5E-12 113.8 12.8 183 199-405 15-241 (589)
420 PRK07276 DNA polymerase III su 98.7 1.8E-07 3.9E-12 99.4 14.4 156 562-767 6-172 (290)
421 COG1224 TIP49 DNA helicase TIP 98.7 1.2E-07 2.7E-12 99.2 12.3 94 273-378 292-393 (450)
422 PRK07399 DNA polymerase III su 98.7 1.1E-07 2.3E-12 103.4 11.9 164 177-353 2-193 (314)
423 KOG1969 DNA replication checkp 98.7 7.1E-07 1.5E-11 101.6 18.5 153 590-798 328-500 (877)
424 KOG0743 AAA+-type ATPase [Post 98.7 1.4E-07 3E-12 102.8 12.4 121 200-346 235-374 (457)
425 PF00493 MCM: MCM2/3/5 family 98.7 1.5E-08 3.3E-13 111.2 5.2 215 588-825 57-310 (331)
426 PRK08181 transposase; Validate 98.7 2.7E-08 5.9E-13 105.1 6.7 105 590-717 108-215 (269)
427 PRK05818 DNA polymerase III su 98.7 1.1E-07 2.4E-12 98.2 10.6 129 589-758 8-148 (261)
428 COG2607 Predicted ATPase (AAA+ 98.7 6.5E-07 1.4E-11 89.2 15.3 179 555-771 57-240 (287)
429 TIGR00368 Mg chelatase-related 98.7 5.1E-08 1.1E-12 111.9 8.8 151 177-343 190-392 (499)
430 PF12774 AAA_6: Hydrolytic ATP 98.6 2.8E-07 6E-12 95.3 13.0 132 590-765 34-175 (231)
431 PRK07952 DNA replication prote 98.6 6.9E-08 1.5E-12 100.5 8.6 107 590-715 101-209 (244)
432 KOG1969 DNA replication checkp 98.6 5.1E-07 1.1E-11 102.7 15.5 150 199-383 325-505 (877)
433 COG1484 DnaC DNA replication p 98.6 1.1E-07 2.3E-12 100.3 9.3 106 590-717 107-215 (254)
434 smart00763 AAA_PrkA PrkA AAA d 98.6 4.5E-07 9.8E-12 98.2 13.6 50 177-226 48-104 (361)
435 PRK05707 DNA polymerase III su 98.6 1.3E-06 2.9E-11 95.4 17.2 134 200-352 22-175 (328)
436 PF13177 DNA_pol3_delta2: DNA 98.6 6.4E-07 1.4E-11 87.9 12.3 142 183-342 1-161 (162)
437 PF13173 AAA_14: AAA domain 98.6 2.3E-07 5.1E-12 87.4 8.9 121 590-762 4-127 (128)
438 PRK09183 transposase/IS protei 98.6 5.9E-08 1.3E-12 102.8 5.0 105 590-717 104-212 (259)
439 KOG2227 Pre-initiation complex 98.5 4E-07 8.7E-12 99.0 11.2 214 560-817 152-377 (529)
440 COG0606 Predicted ATPase with 98.5 1.1E-07 2.4E-12 104.4 6.9 46 177-224 177-222 (490)
441 PRK07132 DNA polymerase III su 98.5 1.3E-06 2.8E-11 93.9 14.5 135 589-768 19-160 (299)
442 PF13173 AAA_14: AAA domain 98.5 4.6E-07 1E-11 85.4 9.7 123 201-346 3-126 (128)
443 PRK12377 putative replication 98.5 4.6E-07 1E-11 94.6 10.5 115 200-334 101-222 (248)
444 PF12775 AAA_7: P-loop contain 98.5 9.1E-07 2E-11 94.2 12.9 143 199-360 32-198 (272)
445 smart00382 AAA ATPases associa 98.5 3.3E-07 7.2E-12 87.3 8.3 125 200-336 2-140 (148)
446 PRK08769 DNA polymerase III su 98.5 3.1E-06 6.6E-11 91.7 16.4 154 185-352 10-182 (319)
447 PRK07993 DNA polymerase III su 98.5 5.5E-06 1.2E-10 90.9 18.0 178 185-396 8-206 (334)
448 KOG0478 DNA replication licens 98.5 1.1E-06 2.5E-11 99.2 12.6 185 588-797 462-672 (804)
449 PRK08116 hypothetical protein; 98.5 1.4E-06 3.1E-11 92.7 12.9 129 201-344 115-251 (268)
450 COG1239 ChlI Mg-chelatase subu 98.4 3.2E-06 6.9E-11 91.9 14.0 211 179-406 17-287 (423)
451 PRK09862 putative ATP-dependen 98.4 3.2E-07 6.9E-12 104.8 5.8 149 177-345 189-391 (506)
452 PF13401 AAA_22: AAA domain; P 98.4 2.4E-06 5.2E-11 80.7 10.1 109 199-317 3-125 (131)
453 PRK06921 hypothetical protein; 98.4 7E-07 1.5E-11 94.8 7.1 104 589-716 118-230 (266)
454 PRK06871 DNA polymerase III su 98.3 1.1E-05 2.3E-10 87.6 16.0 149 185-352 8-176 (325)
455 PF01695 IstB_IS21: IstB-like 98.3 1.3E-06 2.9E-11 86.9 8.1 99 198-317 45-149 (178)
456 PRK08181 transposase; Validate 98.3 4E-06 8.7E-11 88.7 12.1 77 199-286 105-181 (269)
457 PF13401 AAA_22: AAA domain; P 98.3 3E-07 6.4E-12 87.0 3.1 98 589-686 5-114 (131)
458 PF01637 Arch_ATPase: Archaeal 98.3 1.9E-06 4.1E-11 90.2 9.0 190 561-797 2-223 (234)
459 PRK06964 DNA polymerase III su 98.3 1.6E-05 3.5E-10 86.9 16.2 153 186-352 8-201 (342)
460 KOG1051 Chaperone HSP104 and r 98.3 4.2E-06 9.2E-11 99.9 12.3 112 179-308 562-688 (898)
461 PHA00729 NTP-binding motif con 98.3 3.4E-06 7.4E-11 85.8 9.7 127 189-353 6-138 (226)
462 PRK08939 primosomal protein Dn 98.3 3.3E-06 7.3E-11 91.4 10.0 106 590-717 158-267 (306)
463 PF05729 NACHT: NACHT domain 98.3 1.4E-05 3.1E-10 78.6 13.8 144 202-354 2-162 (166)
464 PRK07952 DNA replication prote 98.3 4.4E-06 9.6E-11 87.1 10.3 128 187-334 84-221 (244)
465 PF05729 NACHT: NACHT domain 98.3 4.6E-06 9.9E-11 82.2 10.1 143 590-771 2-164 (166)
466 PRK08699 DNA polymerase III su 98.3 8.6E-06 1.9E-10 89.0 13.0 153 185-351 7-181 (325)
467 PF03215 Rad17: Rad17 cell cyc 98.3 4.1E-05 8.9E-10 88.4 19.1 215 550-797 11-252 (519)
468 PRK06090 DNA polymerase III su 98.3 2.8E-05 6.1E-10 84.2 16.7 148 185-351 9-176 (319)
469 PF00910 RNA_helicase: RNA hel 98.2 1.8E-06 3.9E-11 78.4 6.3 94 591-710 1-107 (107)
470 COG1484 DnaC DNA replication p 98.2 3.9E-06 8.5E-11 88.4 9.7 101 199-316 104-207 (254)
471 PRK06921 hypothetical protein; 98.2 4.5E-06 9.8E-11 88.7 9.7 73 199-283 116-188 (266)
472 KOG0480 DNA replication licens 98.2 9.8E-06 2.1E-10 91.1 12.5 209 586-823 376-625 (764)
473 PRK06835 DNA replication prote 98.2 5.6E-06 1.2E-10 90.3 10.1 120 199-335 182-306 (329)
474 PRK06526 transposase; Provisio 98.2 3.1E-06 6.8E-11 89.1 7.9 73 199-285 97-172 (254)
475 KOG2228 Origin recognition com 98.2 1.6E-05 3.6E-10 83.2 12.8 165 176-355 21-219 (408)
476 KOG1514 Origin recognition com 98.2 0.00035 7.6E-09 80.2 24.1 199 162-376 380-605 (767)
477 PF13191 AAA_16: AAA ATPase do 98.2 3.1E-06 6.7E-11 85.2 7.0 60 180-246 1-63 (185)
478 KOG1942 DNA helicase, TBP-inte 98.2 1.6E-05 3.5E-10 81.2 11.5 94 273-378 297-399 (456)
479 KOG1514 Origin recognition com 98.1 1.2E-05 2.5E-10 91.9 10.8 191 590-822 424-631 (767)
480 COG3854 SpoIIIAA ncharacterize 98.1 3.3E-05 7.1E-10 76.7 11.7 111 191-316 128-251 (308)
481 KOG2227 Pre-initiation complex 98.1 0.00016 3.4E-09 79.3 17.9 165 176-355 147-338 (529)
482 PF12780 AAA_8: P-loop contain 98.1 2.3E-05 5E-10 83.0 11.4 169 560-773 10-213 (268)
483 PF08298 AAA_PrkA: PrkA AAA do 98.1 4.5E-05 9.7E-10 82.0 13.5 206 558-796 61-344 (358)
484 KOG0478 DNA replication licens 98.1 2.2E-05 4.7E-10 89.1 11.1 192 181-388 431-663 (804)
485 PRK09183 transposase/IS protei 98.0 1.5E-05 3.3E-10 84.5 9.3 108 199-324 101-214 (259)
486 KOG3347 Predicted nucleotide k 98.0 6.6E-05 1.4E-09 69.5 11.2 94 585-710 6-103 (176)
487 PRK08939 primosomal protein Dn 98.0 1.5E-05 3.3E-10 86.3 8.4 88 184-283 136-228 (306)
488 COG5245 DYN1 Dynein, heavy cha 98.0 0.00077 1.7E-08 82.3 22.6 139 198-355 1492-1658(3164)
489 PRK05703 flhF flagellar biosyn 98.0 0.00048 1E-08 78.2 20.5 116 589-715 222-347 (424)
490 COG0488 Uup ATPase components 98.0 0.00048 1E-08 79.8 20.7 29 658-686 455-484 (530)
491 PRK06581 DNA polymerase III su 98.0 9.9E-05 2.1E-09 74.8 12.5 139 589-770 16-161 (263)
492 PF00931 NB-ARC: NB-ARC domain 97.9 0.00022 4.8E-09 77.3 16.0 171 184-378 1-192 (287)
493 TIGR01069 mutS2 MutS2 family p 97.9 0.0017 3.6E-08 79.2 24.4 118 201-323 323-450 (771)
494 PF00931 NB-ARC: NB-ARC domain 97.9 3.3E-05 7.1E-10 83.8 9.0 158 565-771 3-171 (287)
495 KOG1808 AAA ATPase containing 97.9 1.5E-05 3.3E-10 101.0 7.0 147 590-768 442-597 (1856)
496 TIGR02688 conserved hypothetic 97.9 4E-05 8.6E-10 84.3 9.2 139 532-712 170-314 (449)
497 PF03969 AFG1_ATPase: AFG1-lik 97.9 5.1E-05 1.1E-09 83.9 9.7 110 587-720 61-177 (362)
498 PRK05917 DNA polymerase III su 97.8 0.00042 9.2E-09 73.6 15.5 139 185-342 3-154 (290)
499 PF03215 Rad17: Rad17 cell cyc 97.8 0.00023 5.1E-09 82.3 14.6 45 180-224 20-69 (519)
500 PHA00729 NTP-binding motif con 97.8 4.3E-05 9.4E-10 77.8 7.6 24 590-613 19-42 (226)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-133 Score=1149.43 Aligned_cols=759 Identities=59% Similarity=0.926 Sum_probs=696.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAPDEIP 84 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 84 (900)
+||++++++|..|+++|+.++|.+|++||||++|+.++.+. .++..+|+++ ..++..+...+.+.|...+ . +.
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~--~~l~~~~~~~~~~~~~~~~--~-~~ 73 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDL--DKLRQELEEFIDKLPKVLG--S-PY 73 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCCH--HHHHHHHHHHHhccCCCCC--C-CC
Confidence 69999999999999999999999999999999999999886 8999999999 9999999999999987643 2 78
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCCcchh
Q 046258 85 ASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQ 162 (900)
Q Consensus 85 ~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (900)
+|+.+.++++.|+.+|...++.+++++|++++++.++ .+..++...+++...+.+.+..++.. ....+..+..+.+
T Consensus 74 ~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 151 (786)
T COG0542 74 LSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGG--NEVDSKNAEEDQD 151 (786)
T ss_pred CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhcc--cccCCcccccchh
Confidence 8999999999999999999999999999999999876 56788888899999887777777654 2334445566678
Q ss_pred hHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 046258 163 ALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIA 240 (900)
Q Consensus 163 ~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 240 (900)
.|.+|+.|||..| |++||+|||+.++++++++|+|+++||++|+|+||||||++|++||+++..+++|+.|++.+++.
T Consensus 152 ~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 152 ALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 9999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC-hhhHHHhHhhhhhcCcEEEEEecCHHH
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG-SMDAANLFKPMLARGQLRCIGATTLEE 319 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~-~~~~~~~L~~~l~~g~irvI~att~~~ 319 (900)
+|++++.+|++|+|+||++++.++++++.++ ++||||||+|++.++|.+.| .+|++|+|+|+|.+|.++|||+||..+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 9999999999999999999999999999988 99999999999999998866 599999999999999999999999999
Q ss_pred HHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 320 YRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 320 ~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
|+++++.|++|.|||+.|.+.+|+.++...||++++++|+.||+|.++++++.+++.++.||+++|++||+|++|+|++|
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~ 390 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAG 390 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 400 ANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQK 479 (900)
Q Consensus 400 a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~ 479 (900)
+++++... .|..++.+++++.+++.|...+.++.+.. ++...+++..+++
T Consensus 391 a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~----------------------------~k~~~~~~~~~~~- 440 (786)
T COG0542 391 ARVRLEID-KPEELDELERELAQLEIEKEALEREQDEK----------------------------EKKLIDEIIKLKE- 440 (786)
T ss_pred HHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHH----------------------------HHHHHHHHHHHhh-
Confidence 99999999 99999999999999998887776654300 0111111111111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChh----
Q 046258 480 REELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQN---- 555 (900)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~---- 555 (900)
..++.+.+++.. + |+.++|.+++++|+|+|..++.+.
T Consensus 441 -------------------------~~~~~~~~~~~~-~-------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~k 481 (786)
T COG0542 441 -------------------------GRIPELEKELEA-E-------------VDEDDIAEVVARWTGIPVAKLLEDEKEK 481 (786)
T ss_pred -------------------------hhhhhHHHHHhh-c-------------cCHHHHHHHHHHHHCCChhhhchhhHHH
Confidence 122333333332 2 889999999999999999877655
Q ss_pred -------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 556 -------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 556 -------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
..++++||++||..|+++++++++|+..|++|.|+|||+||||||||+||++||..||+++..++++|||+|+
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEcc
Q 046258 629 EQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 708 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~ts 708 (900)
+.|++++|+|+|||||||++||.|+++++++|++|||||||||+||+|+|.|||+||+|+++|+.|++|||+|++|||||
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHhcccCC--ccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 046258 709 NLGAEHLLSGMMG--KVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAV 786 (900)
Q Consensus 709 n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~ 786 (900)
|.|+..+...... ....+..++.++..+++.|+|+|+||+|.+|+|.||+.+++.+|+..+|.++..++.++++.+.+
T Consensus 642 N~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~ 721 (786)
T COG0542 642 NAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLEL 721 (786)
T ss_pred ccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 9999988765332 23456778899999999999999999999999999999999999999999999999998999999
Q ss_pred CHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCC
Q 046258 787 TDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPK 842 (900)
Q Consensus 787 ~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~ 842 (900)
++++.++|++.+|++.||||+|+|+|++.+.+++++.++.+.+.+|.+|.|+++.+
T Consensus 722 s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~v~~~~~ 777 (786)
T COG0542 722 SDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVDDE 777 (786)
T ss_pred CHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999998863
No 2
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.4e-111 Score=1017.94 Aligned_cols=841 Identities=51% Similarity=0.838 Sum_probs=753.4
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
||+++||+.++.+|..|+.+|++++|++|+++|||++|+.++.|.+..+|+++|+|. ..++.++...+.+.|...+.+
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 78 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINA--GQLRTDINQALSRLPQVEGTG 78 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCH--HHHHHHHHHHHhhCCCCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999 999999999998877532223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc-hhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCCc
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ-IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDT 159 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~-~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (900)
..+++|+.++++|+.|+.++...++.+|+++|++++++.++. ...+|...|++...+.+.+..+.+. ....+..+..
T Consensus 79 ~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 156 (857)
T PRK10865 79 GDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGG--ESVNDQGAED 156 (857)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhhcc--cccccccccc
Confidence 568899999999999999999999999999999999998653 4567888899999988876554332 1111112223
Q ss_pred chhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcE
Q 046258 160 TFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVR 237 (900)
Q Consensus 160 ~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~ 237 (900)
..+.|.+||.||++.+ |.++|++||+.++++++++|+|+.++|++|+||||||||++|++||+.+..+.+|..|++.+
T Consensus 157 ~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~ 236 (857)
T PRK10865 157 QRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 236 (857)
T ss_pred chhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCE
Confidence 4578999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCH
Q 046258 238 LIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTL 317 (900)
Q Consensus 238 ~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~ 317 (900)
++.++++.+.+|.+|+|+|+++++.++..+....+++||||||+|.|.+++.+.|+++++|.|++++++|.++|||+||.
T Consensus 237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~ 316 (857)
T PRK10865 237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 316 (857)
T ss_pred EEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCC
Confidence 99999999999999999999999999998876667899999999999998878888999999999999999999999999
Q ss_pred HHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHH
Q 046258 318 EEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDE 397 (900)
Q Consensus 318 ~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~ 397 (900)
++|+++++.|++|.+||+.|.+.+|+.+++..|++.+..+|+.+|++.++++++..++.+++||++++++|++|++++|.
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~ 396 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDE 396 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 398 ACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLK 477 (900)
Q Consensus 398 a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 477 (900)
+|+.++++...+|..++.+++.+..++.++..++.+.+..++.+++++++++..+++++..+.++|..++....+....+
T Consensus 397 aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~ 476 (857)
T PRK10865 397 AASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476 (857)
T ss_pred HhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999887766666667777777777777777777777777666666666677
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhHH
Q 046258 478 QKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEK 557 (900)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 557 (900)
+.++++..+...++...++..+..+.+..++.+.+++..++........++...|+.++|..++++|+|+|..++..++.
T Consensus 477 ~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~ 556 (857)
T PRK10865 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESER 556 (857)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHH
Confidence 77777666677777778888888899999999988887765433223355667899999999999999999998776643
Q ss_pred -----------HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 558 -----------ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 558 -----------~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
++++||+.+++.|.+++.+.++|+..|++|.++++|+||||||||++|++||+.+++++.+++++||++
T Consensus 557 ~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 557 EKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred HHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 347899999999999999999999999999999999999999999999999999998888999999999
Q ss_pred cccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEE
Q 046258 627 YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIM 706 (900)
Q Consensus 627 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~ 706 (900)
|.+.+..++++|.||||+|+..++.+++.++..|++|||||||+++++++++.|+++|++|+++|+.|+.++|+|++||+
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 046258 707 TSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAV 786 (900)
Q Consensus 707 tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~ 786 (900)
|||.+++.+.+. ++........+.+...+.+.|.|+|++|+|.+++|.||+.+++..|++.++.++..++...|+.+.+
T Consensus 717 TSN~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~i 795 (857)
T PRK10865 717 TSNLGSDLIQER-FGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHI 795 (857)
T ss_pred eCCcchHHHHHh-ccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcC
Confidence 999998776542 3333444556677778889999999999999999999999999999999999988888878888999
Q ss_pred CHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEE
Q 046258 787 TDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVY 848 (900)
Q Consensus 787 ~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~ 848 (900)
+++++++|+.++|+++||||+|+++|++.+.+++++.++.|.+.+|+++.|++++ +++.+
T Consensus 796 s~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~~--~~~~~ 855 (857)
T PRK10865 796 SDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVND--DRIVA 855 (857)
T ss_pred CHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEEC--CEEee
Confidence 9999999999999999999999999999999999999999999999999999963 45544
No 3
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.4e-109 Score=1010.12 Aligned_cols=830 Identities=56% Similarity=0.905 Sum_probs=753.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAPDEIPA 85 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 85 (900)
||+.++++|..|+++|++++|++|+|||||+||+.+++|.+.++|+.+|+|+ ..+++++.+.+++.|...+.+..++|
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~--~~l~~~l~~~l~~~~~~~~~~~~~~~ 78 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNV--GALRQALEKELEKLPKVSGPGGQVYL 78 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCH--HHHHHHHHHHhcccccCCCCCCCCCc
Confidence 8999999999999999999999999999999999999999999999999999 99999999999887753222356899
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc-hhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCCcchhhH
Q 046258 86 STTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ-IGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQAL 164 (900)
Q Consensus 86 s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~-~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (900)
|+.++++|+.|+.+|...|+.+|+++|+++|+++++. ...+|...|++...+.+.+..+.+. ...+.......++.|
T Consensus 79 S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~l 156 (852)
T TIGR03346 79 SPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGG--QKVTSANAEDQYEAL 156 (852)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHhhccC--ccccccccccchhHH
Confidence 9999999999999999999999999999999998754 3568888999999988877654321 111111123346799
Q ss_pred hhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 165 KTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 165 ~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
.+||.||++.+ +.++|++||+.++++++++|+++.++|++|+||||||||++|+++++.+..+.+|..|.+.+++.++
T Consensus 157 ~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 157 EKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred HHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 99999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHH
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRK 322 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~ 322 (900)
++.+.+|.+|+|+++.+++.++..+...++++||||||+|.|.+++.+.+..++.|.|++++.+|.++|||+||.++|++
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 99999999999999999999999987766689999999999998777777788999999999999999999999999999
Q ss_pred HhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHh
Q 046258 323 YVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 323 ~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
+++.|++|.+||+.|.++.|+.+++..|++.+..+|+.+|++.++++++..++.++.+|+++|++|++|++|+|++|+.+
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 403 RVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQKREE 482 (900)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 482 (900)
++.....|..++.+++++..++.+...+.++.+...+.+.+++++++..+++++..+...|..+.....++..++++++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (852)
T TIGR03346 397 RMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQ 476 (852)
T ss_pred HhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776777778889999999999999999999999999888888888888877
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCc--ccccccCCCChhhHHHHHHHHhcCCccccChh-----
Q 046258 483 LLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSD--ENLMLTETVGPDQIAEVVSRWTGIPVTRLGQN----- 555 (900)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~----- 555 (900)
+......++...++..+..+.+..++.+.+.+..++..... ...+....++.++|..++++|+|+|..++...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l 556 (852)
T TIGR03346 477 VRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKL 556 (852)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 66666667777788888888888888888888766543211 13456678999999999999999999877654
Q ss_pred ------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 556 ------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 556 ------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
..++++||+.|++.|.+++.+.++|+..|++|.+++||+||||||||++|++||+.++++..+++++||++|.+
T Consensus 557 ~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 557 LHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 34468999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
.+..+.++|.||||+|+.+++.+++.++..|++||||||||++|+++++.|+++|++|+++|+.|+.++|+|++||+|||
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDA 789 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~ 789 (900)
.+++.+..... ....+.....+.+.+.+.|+|+|++|||.+++|.||+.+++.+|+...+..+.+++..+|+.+.++++
T Consensus 717 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~ 795 (852)
T TIGR03346 717 LGSQFIQELAG-GDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDA 795 (852)
T ss_pred cchHhHhhhcc-cccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHH
Confidence 99887654221 12345566778888999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 790 ALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 790 a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
++++|++++|++.+|+|+|+++|++.+.+++++.++.|.+.+|+++.|+++
T Consensus 796 a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~ 846 (852)
T TIGR03346 796 ALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVE 846 (852)
T ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEee
Confidence 999999999999999999999999999999999999999999999999985
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.9e-109 Score=998.41 Aligned_cols=816 Identities=42% Similarity=0.668 Sum_probs=715.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAPDEIPA 85 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 85 (900)
+|+.++++|..|+++|++++|++|+|+|||+|||.++++.+.++|+.+|+++ ..++.++++++.+.|.. .+..+++
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~--~~Lr~~le~~l~~~p~~--~~~~~~~ 76 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDL--GRLKADLARALDKLPRG--NTRTPVF 76 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH--HHHHHHHHHHhccCCCC--CCCCCCc
Confidence 6899999999999999999999999999999999998899999999999999 99999999999887753 2246889
Q ss_pred CHHHHHHHHHHHHH-HHHcCCCcccHHHHHHHHhhccc----hhHHHHHc-CCCHHHHHHHHHHh-hccCCCcc---cCC
Q 046258 86 STTLIKVIRRAQAA-QKAHGDTHLAVDQLILGLLEDSQ----IGDLFKEA-GVAVARVKSEVEKL-RGKEGRKV---ESA 155 (900)
Q Consensus 86 s~~~~~~l~~A~~~-a~~~g~~~i~~e~lllgll~~~~----~~~~L~~~-gi~~~~l~~~~~~~-~~~~~~~~---~~~ 155 (900)
|+.+.++|+.|+.+ +..+|+.+|+++|+++|+++++. ...++..+ |++...+...+..+ ++.. ... .+.
T Consensus 77 S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (852)
T TIGR03345 77 SPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSA-EASAAAADA 155 (852)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCc-ccccccccc
Confidence 99999999999984 56789999999999999998754 23356665 88888887776554 2111 011 000
Q ss_pred ------CCCcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 156 ------SGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 156 ------~~~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
......+.|.+|+.||++.+ ++++|++||+.++++++++|+++.++|++|+||||||||++|+++|+++..+
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 156 GPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred ccccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 01124578999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC
Q 046258 228 DVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG 307 (900)
Q Consensus 228 ~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g 307 (900)
.+|..|.+.+++.++++.+.+|..++|+|+.+++.++..+....+++||||||+|.|.+++.+.+..+++|.|++++++|
T Consensus 236 ~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G 315 (852)
T TIGR03345 236 DVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG 315 (852)
T ss_pred CCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC
Confidence 99999999999999999999999999999999999999998766789999999999999887767788999999999999
Q ss_pred cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCC
Q 046258 308 QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 308 ~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
.++|||+||+++|.++++.|++|.|||+.|.+.+|+.+++..||+.+...|+.+|++.++++++..++.++.||+++|++
T Consensus 316 ~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 388 PDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKD--KASKARLVEVRKELDDLRDKLQPLMMRYKK 465 (900)
Q Consensus 388 p~~a~~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 465 (900)
||+|++|+|+||+.++++....|..++.+++.+..++.+...+..+.. .....+.+++++++..+++++..+..+|..
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQ 475 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888765532 123346777888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHh
Q 046258 466 EKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWT 545 (900)
Q Consensus 466 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 545 (900)
++...+++...+.+..... ........+.+..++.+.+++..++.. ..+....|+.++|..++++|+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~i~~vv~~~t 542 (852)
T TIGR03345 476 EKELVEAILALRAELEADA---------DAPADDDAALRAQLAELEAALASAQGE----EPLVFPEVDAQAVAEVVADWT 542 (852)
T ss_pred HHHHHHHHHHHHHHhhhcc---------cchhhhhHHHHHHHHHHHHHHHHHhhc----cccccceecHHHHHHHHHHHH
Confidence 7765544443333222100 000122334455666777777666633 245566789999999999999
Q ss_pred cCCccccChhHH-----------HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC
Q 046258 546 GIPVTRLGQNEK-----------ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 546 ~~~~~~~~~~~~-----------~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
|||+.++..++. ++++||+.|++.|+++++++++|+.+|++|.+++||+||||||||++|++||+.+++
T Consensus 543 gip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 543 GIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 999988866543 468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC
Q 046258 615 DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 615 ~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
+...|+++||++|.+.+++++|+|+||||+|+.++|.|+++++++|++||+||||||+|+++++.|+++|++|+++|+.|
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCcc---chHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKV---TMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+.++|+|++||+|||.+.+.+.....+.. ..+.....+.+.+...|+|+|++||+ +|+|.||+.+++.+|+...+.
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988775333322 23556778888999999999999996 999999999999999999999
Q ss_pred HHHHHHHhc-CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 772 DVAIRLAER-GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 772 ~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
++.+++..+ |+.+.++++++++|+..+|.+.+|||+|+++|+..+.+++++.++.+........+|++.
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 998888776 999999999999999999999999999999999999999999999999888777777653
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=8.8e-108 Score=992.46 Aligned_cols=786 Identities=44% Similarity=0.742 Sum_probs=684.9
Q ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCCC
Q 046258 2 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAPD 81 (900)
Q Consensus 2 ~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~~ 81 (900)
||++||++++++|..|+++|++++|++|+|||||+|||.++.|.+.++|+++|+++ ..++..+.+.+++.+.. .+.
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~--~~l~~~l~~~l~~~~~~--~~~ 76 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTL--KDARIEVEKIIGRGTGF--VAV 76 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCH--HHHHHHHHHHHhcCCCC--Ccc
Confidence 67899999999999999999999999999999999999999999999999999999 99999999988765432 234
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHHhhccCCCcccC-CCCC
Q 046258 82 EIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVES-ASGD 158 (900)
Q Consensus 82 ~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~-~~~~ 158 (900)
.++||+.++++|+.|+.+|..+++.+|+++|+++|+++++. ...+|...|++...++..+............. ....
T Consensus 77 ~~~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e~~~~~~~~~ 156 (821)
T CHL00095 77 EIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAILGAEQSR 156 (821)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhcccccccccccccc
Confidence 68999999999999999999999999999999999998653 46689999999999888776543221000100 1112
Q ss_pred cchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCc
Q 046258 159 TTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADV 236 (900)
Q Consensus 159 ~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~ 236 (900)
...+.|.+|+.||++.| |.++|++||++++++++++|+++.++|++|+||||||||++|+++|+.+..+++|..|++.
T Consensus 157 ~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~ 236 (821)
T CHL00095 157 SKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDK 236 (821)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 23578999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC
Q 046258 237 RLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT 316 (900)
Q Consensus 237 ~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att 316 (900)
+++.+|++.+++|.+|+|+|+++++.+++.+... +++||||||+|.|.+++...|..++++.|++.+.+|.+++||+||
T Consensus 237 ~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 237 LVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATT 315 (821)
T ss_pred eEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCC
Confidence 9999999999999999999999999999998764 488999999999999887777889999999999999999999999
Q ss_pred HHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHH
Q 046258 317 LEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVD 396 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld 396 (900)
..+|.++++.+++|.+||+.|.+.+|+.++..+|++.+.+.|+.++++.++++++..++.++.+|+++|++|++|++|+|
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 397 EACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRL 476 (900)
Q Consensus 397 ~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~ 476 (900)
++|+.+++.....|..+..+++++..++.+...+..+.+. .+..+++.+...+++++..+..+|..+.
T Consensus 396 ~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 463 (821)
T CHL00095 396 EAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKTEE--------- 463 (821)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 9999999988888888888888877776555444332110 0111111111122222222222221110
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhH
Q 046258 477 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNE 556 (900)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 556 (900)
. .......++.++|..++++|+|+|..++..++
T Consensus 464 ------------------------------------------~-----~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~ 496 (821)
T CHL00095 464 ------------------------------------------E-----KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSE 496 (821)
T ss_pred ------------------------------------------c-----ccccCCccCHHHHHHHHHHHHCCCchhhchhH
Confidence 0 01123568999999999999999998887664
Q ss_pred -----------HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc
Q 046258 557 -----------KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS 625 (900)
Q Consensus 557 -----------~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 625 (900)
.++++||+.|++.|++++.+.++|+..|++|.+++||+||||||||++|++||+.++++..+++++||+
T Consensus 497 ~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s 576 (821)
T CHL00095 497 SEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576 (821)
T ss_pred HHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEch
Confidence 345899999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 626 EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 626 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
+|.+.+.+++++|+|+||+|+++++.+++.++.+|++|||||||||+|+++++.|+++||+|+++|+.|+.++|+|++||
T Consensus 577 ~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 577 EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred hccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcHHHhcc--cCC---------ccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 706 MTSNLGAEHLLSG--MMG---------KVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 706 ~tsn~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
+|||.+...+... ..+ ...+..++..+.+.+...|+|+|++|+|.+|+|.||+.+++.+|++..+.++.
T Consensus 657 ~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~ 736 (821)
T CHL00095 657 MTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLF 736 (821)
T ss_pred EeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999998766531 111 11235567778888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEEEec
Q 046258 775 IRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRVQK 852 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 852 (900)
+++..+|+.+.++++++++|+..+|++.+|||+|+++|++.+..++++.++.+.+.+|++++|+++++ +++.|..-.
T Consensus 737 ~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~~-~~~~~~~~~ 813 (821)
T CHL00095 737 KRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDE-KEVKILLIN 813 (821)
T ss_pred HHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeCC-CcEEEEecc
Confidence 99988999999999999999999999999999999999999999999999999999999999999654 467775433
No 6
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-104 Score=919.26 Aligned_cols=816 Identities=49% Similarity=0.728 Sum_probs=736.7
Q ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcC-CCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 2 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAG-GENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 2 ~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g-~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
+++.||++|.++|..|+.+|+++||++|||+|++.+||.+++|+++++|.+.+ ++. .++...+...+.++|++.+++
T Consensus 8 ~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~--ralelc~~v~l~rlpt~~~p~ 85 (898)
T KOG1051|consen 8 VQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQC--RALELCFNVSLNRLPTSYGPP 85 (898)
T ss_pred hHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccH--HHHHHHHHHHHHhccCCCCCc
Confidence 45789999999999999999999999999999999999999999999999998 666 999999999999999986555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH--hhccchhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCC
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGL--LEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGD 158 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgl--l~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (900)
...+++..+++++..+.+....+++++|.++|..+.+ ++++.+.++++++|++...++..+...++. .+.++..+.
T Consensus 86 ~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~--~~~~~~~~~ 163 (898)
T KOG1051|consen 86 VSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQ--FRSPSRGPL 163 (898)
T ss_pred cchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhccc--cCCCCcCCc
Confidence 5566666666666666666677888899999985554 577899999999999999999999888755 333444445
Q ss_pred cchhhHhhhhhcHHHHc--CCCCCCCCc-hHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCC
Q 046258 159 TTFQALKTYGRDLVEQA--GKLDPVIGR-DEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLAD 235 (900)
Q Consensus 159 ~~~~~l~~~~~~l~~~a--~~~~~~iG~-~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~ 235 (900)
.....|.+|+.|+++.+ |.++|++|+ ++++++++++|.|++++|++|+|+||+|||.+++.+++++..|++|..|.+
T Consensus 164 ~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~ 243 (898)
T KOG1051|consen 164 WPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKD 243 (898)
T ss_pred cchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccc
Confidence 66889999999999999 889999999 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEec
Q 046258 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGAT 315 (900)
Q Consensus 236 ~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~at 315 (900)
.+++.+|++.+.+|.+++|+|+++++.+..+++..++++||||||+|.+.+++...|.++++|+|++.+.+|.+||||+|
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGat 323 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGAT 323 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecc
Confidence 99999999999999999999999999999999988889999999999999998887789999999999999999999999
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
|..+|.++++.+|+|.+||+.+.+..|+..+...|++.+.++|+.+|++.++++++..++.++.+|++.+++|+.+++++
T Consensus 324 T~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~ 403 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLE 403 (898)
T ss_pred cHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 396 DEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRR 475 (900)
Q Consensus 396 d~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ 475 (900)
|++|+..+......|.++...++....++.++..|+++.+..+..+.. .+.+..++...+++...|..++..++++..
T Consensus 404 dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~ 481 (898)
T KOG1051|consen 404 DEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKL 481 (898)
T ss_pred HHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhcc
Confidence 999999999999999999999999898999999999988877777666 666667777778899999888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChh
Q 046258 476 LKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQN 555 (900)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 555 (900)
.++.++.... ...+++.+|+..+.+++|..+|. .... +-. + ...++.+|..++++|+|+|..+..+.
T Consensus 482 ~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~-~~~~-~~~-------~---~~~~~~~i~~~~s~~tgip~~~~~~~ 548 (898)
T KOG1051|consen 482 KKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIPD-ELSE-KSN-------D---NQGGESDISEVVSRWTGIPVDRLAEA 548 (898)
T ss_pred ccCCcccchh-hhcccCCCCcchhhhccccccch-hhhh-hcc-------c---ccCCccchhhhhhhhcCCchhhhhhh
Confidence 7777777666 66677888999999999999882 1111 111 0 11178899999999999998877543
Q ss_pred -----------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 556 -----------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 556 -----------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
..++++||++|+..|++++.+++.|+.+| +|.++|+|.||+|||||.||++||..+|+++..|+++||
T Consensus 549 e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDm 627 (898)
T KOG1051|consen 549 EAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDM 627 (898)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEech
Confidence 45679999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEE
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVI 704 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~i 704 (900)
++|++ +++++|.||||+|+.+++.|+++++++|++|||||||||+|+++++.|+|+||+|+++|+.|+.++|+|+||
T Consensus 628 se~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 628 SEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred hhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 99988 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcHHHhcccC-----C-----ccchHHHHHHHHHHHH----hcccHHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 705 IMTSNLGAEHLLSGMM-----G-----KVTMQVARDQVLQEVR----KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 705 I~tsn~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~----~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
|||+|.+.+.+..... . ...+...+..+.+.+. ..|+|+|++|+|.++.|.|++.+++.+|+...+
T Consensus 705 IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 705 IMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred EEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 9999999887765432 1 1123345567777778 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecC
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASP 841 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~ 841 (900)
.+..+++...++...+++.+.+++...+|++.||||+|++.|++.+.+.++..++ ++++++.+++|....
T Consensus 785 ~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 785 TEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence 9999999888888999999999999999999999999999999999999999999 999999999998875
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3.3e-100 Score=916.80 Aligned_cols=706 Identities=44% Similarity=0.731 Sum_probs=630.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhh-cCCCCCC-CCCCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMK-KLPSQTP-APDEI 83 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~-~~~~~~~-~~~~~ 83 (900)
||+.++++|..|+++|++++|++|+|||||+|||++++ +.++|+++|+++ +.+++.+.+.++ +.|...+ .++.+
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid~--~~l~~~l~~~l~~~~p~~~~~~~~~~ 76 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGDV--EALRKDLEDYLENNLPSITEENEADP 76 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCCH--HHHHHHHHHHHhhcCCCCCCCCCCCC
Confidence 68999999999999999999999999999999999876 568999999999 999999999887 5554211 22468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHH-hhccCCC-cccCCC--C
Q 046258 84 PASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEK-LRGKEGR-KVESAS--G 157 (900)
Q Consensus 84 ~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~-~~~~~~~-~~~~~~--~ 157 (900)
++|+.++++|+.|+.+|..+|+.+|+++|+++|++.++. ...+|...|++...+...+.. ....... ...+.. +
T Consensus 77 ~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 156 (731)
T TIGR02639 77 EQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKE 156 (731)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccccccccccccc
Confidence 999999999999999999999999999999999998653 345888999999888877642 1110000 000000 1
Q ss_pred --CcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC
Q 046258 158 --DTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL 233 (900)
Q Consensus 158 --~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l 233 (900)
....+.|.+||.||++.+ +.++|++||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..|
T Consensus 157 ~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 157 EAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred ccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 123568999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhcCcEEEE
Q 046258 234 ADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCI 312 (900)
Q Consensus 234 ~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g~irvI 312 (900)
++++++.+|++.+.+|.+|.|+++.+++.+++.+... +++||||||+|.|.+++.. +|+.++.+.|++.+++|.+++|
T Consensus 237 ~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~I 315 (731)
T TIGR02639 237 KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCI 315 (731)
T ss_pred cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999999999999999999988765 4789999999999988754 4567899999999999999999
Q ss_pred EecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHH
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
|+||+.+|.++++.|++|.|||+.|.+.+|+.+++..||+.+..+|+.+|++.++++++..++.++.+|+++|++|++|+
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 393 DLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDE 472 (900)
Q Consensus 393 ~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 472 (900)
+|+|++|+.+++.....
T Consensus 396 ~lld~a~a~~~~~~~~~--------------------------------------------------------------- 412 (731)
T TIGR02639 396 DVIDEAGASFRLRPKAK--------------------------------------------------------------- 412 (731)
T ss_pred HHHHHhhhhhhcCcccc---------------------------------------------------------------
Confidence 99999998776531110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCcccc
Q 046258 473 IRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRL 552 (900)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 552 (900)
....++.+++..++++|+|+|+..+
T Consensus 413 -------------------------------------------------------~~~~v~~~~i~~~i~~~tgiP~~~~ 437 (731)
T TIGR02639 413 -------------------------------------------------------KKANVSVKDIENVVAKMAHIPVKTV 437 (731)
T ss_pred -------------------------------------------------------cccccCHHHHHHHHHHHhCCChhhh
Confidence 0123677889999999999998776
Q ss_pred Chh-----------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 553 GQN-----------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 553 ~~~-----------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
..+ ..++++||+.+++.+.+++.+.++|+..+.+|.+++||+||||||||++|++||+.++. ++++
T Consensus 438 ~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~ 514 (731)
T TIGR02639 438 SVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLER 514 (731)
T ss_pred hhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEE
Confidence 543 35668999999999999999999999999999999999999999999999999999954 8999
Q ss_pred ecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 622 IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 622 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
+||++|.+.+..+.++|+++||+|++.++.++++++.+|++|||||||||+|+++++.|+++||+|+++|+.|+.+||+|
T Consensus 515 ~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 515 FDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred EeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
++||+|||.+...+.....+.. .....+.+...+...|+|+|++|||.+|+|.||+.+++.+|+++.+.++.+++..+|
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~-~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFG-SENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred CEEEECCCcchhhhhhccCCcc-hhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999877654322221 123344677888999999999999999999999999999999999999999999889
Q ss_pred CccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEE
Q 046258 782 VALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYID 838 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~ 838 (900)
+.+.++++++++|+..+|.+++|||+|+++|++.+.+++++.++.+.+.+|+++.|+
T Consensus 674 ~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~~ 730 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKVD 730 (731)
T ss_pred CeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999886
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-99 Score=892.93 Aligned_cols=716 Identities=40% Similarity=0.667 Sum_probs=630.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhc-CCCCC--CCCCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKK-LPSQT--PAPDE 82 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~-~~~~~--~~~~~ 82 (900)
+|+.+.++|..|+.+|++++|.+|++||||++||.++. +..+|+.+|++. ..+++.+.+.+.. .|... +.+..
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDL--VALRQELEAFIEQTTPVLPASEEERD 77 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCCH--HHHHHHHHHHHhhcCCcCCCCCCcCC
Confidence 79999999999999999999999999999999998765 888999999999 9999999998873 33211 11134
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHHhhccCCCcc-cC---CC
Q 046258 83 IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKV-ES---AS 156 (900)
Q Consensus 83 ~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~-~~---~~ 156 (900)
++++..++++|+.|+.+|...++..|+++|+++|+++++. ...+|...|++...+...+.. ........ .+ ..
T Consensus 78 ~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (758)
T PRK11034 78 TQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISH-GTRKDEPSQSSDPGSQ 156 (758)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHh-CCcccccccccccccc
Confidence 7789999999999999999999999999999999998653 345788889988776554321 00000000 00 00
Q ss_pred --C---CcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 046258 157 --G---DTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDV 229 (900)
Q Consensus 157 --~---~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~ 229 (900)
. ....+.|.+||+|||+.| |.+++++||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++
T Consensus 157 ~~~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~v 236 (758)
T PRK11034 157 PNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 236 (758)
T ss_pred ccccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 0 123468999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhcCc
Q 046258 230 PSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQ 308 (900)
Q Consensus 230 p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g~ 308 (900)
|..+.++.++.++.+.+++|.+|+|+++.+++.+++.+.... +.||||||+|.|.+.+.. ++..++.|.|++++.+|.
T Consensus 237 P~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~ 315 (758)
T PRK11034 237 PEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK 315 (758)
T ss_pred CchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999887655 668999999999988764 567899999999999999
Q ss_pred EEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCCh
Q 046258 309 LRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 309 irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p 388 (900)
++||++||+.+|.+++..|++|.|||+.|.+++|+.+++..||+.+..+|+.+|++.++++++..++.++.+|++++++|
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 389 DKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKE 468 (900)
Q Consensus 389 ~~a~~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 468 (900)
++|++++|++|+..++.....
T Consensus 396 dKaidlldea~a~~~~~~~~~----------------------------------------------------------- 416 (758)
T PRK11034 396 DKAIDVIDEAGARARLMPVSK----------------------------------------------------------- 416 (758)
T ss_pred HHHHHHHHHHHHhhccCcccc-----------------------------------------------------------
Confidence 999999999999876421000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCC
Q 046258 469 RIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIP 548 (900)
Q Consensus 469 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 548 (900)
. ...++.++|..++++|+|+|
T Consensus 417 ---------------------------------------------------------~--~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 417 ---------------------------------------------------------R--KKTVNVADIESVVARIARIP 437 (758)
T ss_pred ---------------------------------------------------------c--ccccChhhHHHHHHHHhCCC
Confidence 0 01256678899999999999
Q ss_pred ccccChhH-----------HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC
Q 046258 549 VTRLGQNE-----------KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN 617 (900)
Q Consensus 549 ~~~~~~~~-----------~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~ 617 (900)
..++..++ .++++||++|++.|..++..+++|+..+++|.+++||+||||||||++|+++|+.+. .
T Consensus 438 ~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~ 514 (758)
T PRK11034 438 EKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---I 514 (758)
T ss_pred hhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---C
Confidence 88776543 345899999999999999999999999999999999999999999999999999994 4
Q ss_pred ceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCcee
Q 046258 618 LLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 618 ~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
+|+++||++|.+.+.+++++|.|+||+|+..++.++++++++|++|||||||||+|+++++.|+++||+|+++|..|+.+
T Consensus 515 ~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 515 ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
+|+|++||+|||.+.+.+.....+.... .....+.+.++..|+|+|++|||.+|.|.||+.+++.+|+..+|.++.+++
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~~~g~~~~-~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l 673 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERKSIGLIHQ-DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL 673 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhcccCcccc-hhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765433322111 113445677889999999999999999999999999999999999999999
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEE
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYR 849 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~ 849 (900)
..+|+.+.++++++++|+..+|++.+|||+|+++|++.+.+++++.++.+.+.+|++++|++.+++..|.+.
T Consensus 674 ~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~~~~~~~~~~~~ 745 (758)
T PRK11034 674 DQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYG 745 (758)
T ss_pred HHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEECCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999998655555554
No 9
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-62 Score=542.68 Aligned_cols=504 Identities=22% Similarity=0.359 Sum_probs=405.7
Q ss_pred hcCcEEEEEec-CHHHHHHHhhccHHHHcccceeeecC-CChHHHHHHHHHHHHHHhcccCcc--cChhHHHHHHHHhhh
Q 046258 305 ARGQLRCIGAT-TLEEYRKYVEKDAAFERRFQQVYVAE-PSVPDTVSILRGLKEKYEGHHGVR--IQDRALVVAAQLSAR 380 (900)
Q Consensus 305 ~~g~irvI~at-t~~~~~~~~~~d~al~~Rf~~i~i~~-P~~~e~~~ilr~l~~~~~~~~~v~--i~~eal~~l~~~s~~ 380 (900)
++|.++|++.+ .+....++...++++...++.+.-.. ....+..++.+.+...|+.+.... ++++.+..+..+.
T Consensus 84 pdg~~kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~-- 161 (782)
T COG0466 84 PDGTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSID-- 161 (782)
T ss_pred CCCcEEEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhccc--
Confidence 57888888887 55555444444455544444333221 124567788899999998876654 7888887777555
Q ss_pred hccCCCChhhHHHHHHHHHHHhhhhccCChhHHHHHH------HHHHHH--HHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q 046258 381 YITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLE------RKRMQL--EIELHALEKEKDKASKARLVEVRKELDDL 452 (900)
Q Consensus 381 ~~~~~~~p~~a~~Lld~a~a~~~~~~~~~~~~l~~~~------~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 452 (900)
.+..+.|.+++++.++...++..++..+ ..+..+ +++...+++++..+++++|++.|+|| ||
T Consensus 162 ---------~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREy-yL 231 (782)
T COG0466 162 ---------DPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREY-YL 231 (782)
T ss_pred ---------chHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 6669999999999988887777765443 333333 44555677788999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCC
Q 046258 453 RDKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETV 532 (900)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (900)
+||+++|+++++...+...++.++++++++...+.+. .+.+.+++++++ .+.+.+.
T Consensus 232 ~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~ev-----------------k~k~~~El~kL~-------~m~~~Sa 287 (782)
T COG0466 232 REQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEA-----------------KEKAEKELKKLE-------TMSPMSA 287 (782)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHH-----------------HHHHHHHHHHHh-------cCCCCCc
Confidence 9999999999998765458899999999985554444 445889999999 6667888
Q ss_pred ChhhHHHHHHHHhcCCccccChh-----HHHHHhcHH-HHHHHHHHHHHHHhcCC---CCCCCCCeEEEEeccCCchHHH
Q 046258 533 GPDQIAEVVSRWTGIPVTRLGQN-----EKERLIGLA-EAVNAVAESVLRSRAGL---GRPQQPTGSFLFLGPTGVGKTE 603 (900)
Q Consensus 533 ~~~~i~~~i~~~~~~~~~~~~~~-----~~~~l~g~~-~av~~l~~~i~~~~~g~---~~~~~p~~~~ll~Gp~GtGKT~ 603 (900)
+...+++|++|.+.+||.+-... ..++++..+ ..++.+.+++..+.+.. ...+.|+ +||+||||||||+
T Consensus 288 E~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpI--LcLVGPPGVGKTS 365 (782)
T COG0466 288 EATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPI--LCLVGPPGVGKTS 365 (782)
T ss_pred hHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcE--EEEECCCCCCchh
Confidence 99999999999999999877665 345666555 33444444444433322 2224465 8899999999999
Q ss_pred HHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-CCeEEEEccccccCHHHH----H
Q 046258 604 LAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR-PYSVVLFDEVEKAHISVF----N 678 (900)
Q Consensus 604 lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~-~~~vlllDEidk~~~~~~----~ 678 (900)
|+++||+++++ +|+++.+++ .++++++.||+++|+|.++|..++...+.. .++|++||||||+..+++ .
T Consensus 366 LgkSIA~al~R---kfvR~sLGG---vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaS 439 (782)
T COG0466 366 LGKSIAKALGR---KFVRISLGG---VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPAS 439 (782)
T ss_pred HHHHHHHHhCC---CEEEEecCc---cccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHH
Confidence 99999999977 999999999 566799999999999999998887776644 789999999999998875 8
Q ss_pred HHHHHhh---CCeeecCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeec
Q 046258 679 TLLQVLD---DGRLTDGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVF 754 (900)
Q Consensus 679 ~Ll~~ld---~g~~~d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f 754 (900)
+||++|| |..|.|+| +.++|+++++||+|+|. ...+|++|++|| ++|.+
T Consensus 440 ALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs--------------------------l~tIP~PLlDRM-EiI~l 492 (782)
T COG0466 440 ALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS--------------------------LDTIPAPLLDRM-EVIRL 492 (782)
T ss_pred HHHhhcCHhhcCchhhccccCccchhheEEEeecCc--------------------------cccCChHHhcce-eeeee
Confidence 9999998 78899999 99999999999999997 577999999999 99999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCc---cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCC
Q 046258 755 DPLSHEQLRKVARLQMKDVAIRLAERGVA---LAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDE 831 (900)
Q Consensus 755 ~pl~~e~~~~I~~~~l~~~~~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~ 831 (900)
..|++++..+|++++|- .+.+.++|+. +.|+++|+..|+++ |+++.|+|.|+|.|. .+++..+..++.+..+.
T Consensus 493 sgYt~~EKl~IAk~~Li--Pk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~-ki~RK~~~~i~~~~~k~ 568 (782)
T COG0466 493 SGYTEDEKLEIAKRHLI--PKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIA-KICRKAAKKILLKKEKS 568 (782)
T ss_pred cCCChHHHHHHHHHhcc--hHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHH-HHHHHHHHHHHhcCccc
Confidence 99999999999999998 7778888765 89999999999976 999999999999995 46666666666654432
Q ss_pred -----------------------------------------CCEEEEEec--CCCCeEEEEEecCCcccccccc------
Q 046258 832 -----------------------------------------NSTVYIDAS--PKGDNLVYRVQKNGGFVDAATG------ 862 (900)
Q Consensus 832 -----------------------------------------~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~------ 862 (900)
|+++.|+.. +|+|+++++++++++|++|+..
T Consensus 569 ~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l~lTG~LGdVMKESa~~A~s~vr 648 (782)
T COG0466 569 IVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKLTLTGSLGDVMKESAQAALSYVR 648 (782)
T ss_pred ceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeeeecCCceEEEEEEEEecCCccEEEeccHHHHHHHHHHHHHHHHH
Confidence 788888876 8999999999999999999987
Q ss_pred -------------ccccccccCCCC--CCCCchhHH
Q 046258 863 -------------RKSDVLIQIPNG--PRTDPSQAV 883 (900)
Q Consensus 863 -------------~~~~~~~~~p~~--~~~~~~~~~ 883 (900)
++.|||+|||+| |||||||--
T Consensus 649 s~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGi 684 (782)
T COG0466 649 SRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGI 684 (782)
T ss_pred HHHHHcCCCcccccccceEEECCCCCCCCCCcchHH
Confidence 566999999999 999999953
No 10
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=6.7e-48 Score=459.62 Aligned_cols=506 Identities=19% Similarity=0.311 Sum_probs=385.1
Q ss_pred hcCcEEEEEec-CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcc--cChhHHHHHHHHhhhh
Q 046258 305 ARGQLRCIGAT-TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVR--IQDRALVVAAQLSARY 381 (900)
Q Consensus 305 ~~g~irvI~at-t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~--i~~eal~~l~~~s~~~ 381 (900)
++|.+.+++.+ .+-....+...+|++..+++.+....++..+..++++.+.+.+..+.... ++++.+..+..
T Consensus 84 ~DG~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~----- 158 (784)
T PRK10787 84 PDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS----- 158 (784)
T ss_pred CCCeEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhhc-----
Confidence 45666666665 44443333345666555554443322233445566666666665544322 44444333222
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhhccCChhHHHH------HH--HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q 046258 382 ITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDN------LE--RKRMQLEIELHALEKEKDKASKARLVEVRKELDDLR 453 (900)
Q Consensus 382 ~~~~~~p~~a~~Lld~a~a~~~~~~~~~~~~l~~------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 453 (900)
.+++..+.|.+++.+.+....++..|+. ++ ..+...+.++..++.++..++++++++.|+|| +||
T Consensus 159 ------~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~-~lr 231 (784)
T PRK10787 159 ------IDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREY-YLN 231 (784)
T ss_pred ------cccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-cch
Confidence 2367789999999998887777666544 33 33444466777788899999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCC
Q 046258 454 DKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVG 533 (900)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 533 (900)
|||+.|++++++..+..++++++++|++....+.+ ..+.+.+++++++ .+...+.+
T Consensus 232 eq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~e~~~~~-------~~~~~~~e 287 (784)
T PRK10787 232 EQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKE-----------------AKEKAEAELQKLK-------MMSPMSAE 287 (784)
T ss_pred hhhhhhcccccCCCcchhHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHHH-------hCCCCCch
Confidence 99999999999876666788999999987555444 4445899999999 66678889
Q ss_pred hhhHHHHHHHHhcCCccccChh-----H-----HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHH
Q 046258 534 PDQIAEVVSRWTGIPVTRLGQN-----E-----KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTE 603 (900)
Q Consensus 534 ~~~i~~~i~~~~~~~~~~~~~~-----~-----~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~ 603 (900)
...+++|++|.+.+||.+...+ . .+..+|++.+.+.|.+.+..... ......| .++|+||||||||+
T Consensus 288 ~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~GppG~GKTt 364 (784)
T PRK10787 288 ATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVGPPGVGKTS 364 (784)
T ss_pred HHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEECCCCCCHHH
Confidence 9999999999999999887665 2 23366777777767665543221 1112233 59999999999999
Q ss_pred HHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-CCeEEEEccccccCHHH----HH
Q 046258 604 LAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR-PYSVVLFDEVEKAHISV----FN 678 (900)
Q Consensus 604 lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~-~~~vlllDEidk~~~~~----~~ 678 (900)
+|+.+|+.+.. +|++++++... +.+.+.|+...|+|..+|..+....... .++|+||||||+++++. ++
T Consensus 365 l~~~ia~~l~~---~~~~i~~~~~~---d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~ 438 (784)
T PRK10787 365 LGQSIAKATGR---KYVRMALGGVR---DEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPAS 438 (784)
T ss_pred HHHHHHHHhCC---CEEEEEcCCCC---CHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHH
Confidence 99999999965 89999988853 4578999999999998876544443322 56899999999999876 59
Q ss_pred HHHHHhhCC---eeecCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeec
Q 046258 679 TLLQVLDDG---RLTDGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVF 754 (900)
Q Consensus 679 ~Ll~~ld~g---~~~d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f 754 (900)
+|+++||.+ .|+|++ +..+|+++++||+|+|. . .++|+|++|| .+|.|
T Consensus 439 aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~--------------------------~-~i~~aLl~R~-~ii~~ 490 (784)
T PRK10787 439 ALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS--------------------------M-NIPAPLLDRM-EVIRL 490 (784)
T ss_pred HHHHHhccccEEEEecccccccccCCceEEEEcCCC--------------------------C-CCCHHHhcce-eeeec
Confidence 999999964 688887 67899999999999986 2 3899999999 79999
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCC--
Q 046258 755 DPLSHEQLRKVARLQMK-DVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDE-- 831 (900)
Q Consensus 755 ~pl~~e~~~~I~~~~l~-~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~-- 831 (900)
.+|+.+++.+|++++|. +..++.+..+..+.++++++++|++ +|++++|||+|+|.|++.+...+++.++.+...+
T Consensus 491 ~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~ 569 (784)
T PRK10787 491 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIE 569 (784)
T ss_pred CCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 99999999999999996 3333333344568999999999997 8999999999999999999999999888765443
Q ss_pred --------------------------------------CCEEEEEec--CCCCeEEEEEecCCcccccccc---------
Q 046258 832 --------------------------------------NSTVYIDAS--PKGDNLVYRVQKNGGFVDAATG--------- 862 (900)
Q Consensus 832 --------------------------------------~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~--------- 862 (900)
|..+.|++. +|+|++.+++..+++|++++..
T Consensus 570 v~~~~~~~~lg~~~~~~~~~~~~~~~G~~~gla~t~~gg~~l~iE~~~~~g~g~~~~tG~lg~vmkes~~~A~~~~~~~~ 649 (784)
T PRK10787 570 INGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARA 649 (784)
T ss_pred ecHHHHHHHhCCCccccchhhcCCCceEEEEeEEeCCCeEEEEEEEEEecCCceEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 667777765 7999999999999999999886
Q ss_pred ----------ccccccccCCCC--CCCCchhHHh
Q 046258 863 ----------RKSDVLIQIPNG--PRTDPSQAVK 884 (900)
Q Consensus 863 ----------~~~~~~~~~p~~--~~~~~~~~~~ 884 (900)
...|+|+|+|.| |||||||--+
T Consensus 650 ~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla 683 (784)
T PRK10787 650 EKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIA 683 (784)
T ss_pred HHcCCCcccccCceEEEEecCCCCCCCCCchHHH
Confidence 256999999999 9999999654
No 11
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-47 Score=417.19 Aligned_cols=431 Identities=23% Similarity=0.358 Sum_probs=336.0
Q ss_pred hHHHHHHHHHHHhhhhccCChhHHHHHH--------HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 390 KAIDLVDEACANVRVQLDSQPEEIDNLE--------RKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMM 461 (900)
Q Consensus 390 ~a~~Lld~a~a~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 461 (900)
....|.|..++.........+..++.++ -.+...+.+...|+..+.+.+.+.+.+.+++| .|+||++.|.+
T Consensus 249 ~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~y-lL~eQlk~IKk 327 (906)
T KOG2004|consen 249 NPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREY-LLREQLKAIKK 327 (906)
T ss_pred ChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHH-HHHHHHHHHHH
Confidence 5566677777666655555555554433 22334455666777788888999999999999 99999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHH
Q 046258 462 RYKKEKERID-EIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEV 540 (900)
Q Consensus 462 ~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 540 (900)
+++.+++-.+ -...++++++.+. ++....+.+.+++.+++ .+.....+.+..++|
T Consensus 328 eLg~e~Ddkd~~~~~~~er~~~~~-----------------~P~~v~kv~~eEl~kL~-------~le~~~sEfnvtrNY 383 (906)
T KOG2004|consen 328 ELGIEKDDKDALVEKFRERIKSLK-----------------MPDHVLKVIDEELTKLK-------LLEPSSSEFNVTRNY 383 (906)
T ss_pred hhCCCccchhhHHHHHHHHhhhcc-----------------CcHHHHHHHHHHHHHHh-------ccCccccchhHHHHH
Confidence 9997744333 4556677766543 34444556888899998 555667778899999
Q ss_pred HHHHhcCCccccChhH-----HHHHhcHH-HHHHHHHHHHHHHhcC--CCCC-CCCCeEEEEeccCCchHHHHHHHHHHH
Q 046258 541 VSRWTGIPVTRLGQNE-----KERLIGLA-EAVNAVAESVLRSRAG--LGRP-QQPTGSFLFLGPTGVGKTELAKALAEQ 611 (900)
Q Consensus 541 i~~~~~~~~~~~~~~~-----~~~l~g~~-~av~~l~~~i~~~~~g--~~~~-~~p~~~~ll~Gp~GtGKT~lA~~la~~ 611 (900)
++|.+.+||.+...+. ++.++..+ .++..|.+++..+.+. ++.. ..+ .+||+||||+|||++||+||++
T Consensus 384 Ldwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGk--IlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 384 LDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGK--ILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred HHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCc--EEEEeCCCCCCcccHHHHHHHH
Confidence 9999999999887763 34555544 5566666666555442 2211 233 4889999999999999999999
Q ss_pred hcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEccccccCHHHH----HHHHHHhh-
Q 046258 612 LFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDEVEKAHISVF----NTLLQVLD- 685 (900)
Q Consensus 612 l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDEidk~~~~~~----~~Ll~~ld- 685 (900)
|++ .|+|++.+.+. +++++.||+++|+|.++|..+....+ ...++++|||||||+....+ .+||++||
T Consensus 462 LnR---kFfRfSvGG~t---DvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDP 535 (906)
T KOG2004|consen 462 LNR---KFFRFSVGGMT---DVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDP 535 (906)
T ss_pred hCC---ceEEEeccccc---cHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcCh
Confidence 977 99999999954 56899999999999999876655444 23678999999999976554 79999998
Q ss_pred --CCeeecCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHH
Q 046258 686 --DGRLTDGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQL 762 (900)
Q Consensus 686 --~g~~~d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~ 762 (900)
|..|.|++ ..++|+++++||+|+|. ...++|+|++|| ++|....|..++.
T Consensus 536 EQNanFlDHYLdVp~DLSkVLFicTAN~--------------------------idtIP~pLlDRM-EvIelsGYv~eEK 588 (906)
T KOG2004|consen 536 EQNANFLDHYLDVPVDLSKVLFICTANV--------------------------IDTIPPPLLDRM-EVIELSGYVAEEK 588 (906)
T ss_pred hhccchhhhccccccchhheEEEEeccc--------------------------cccCChhhhhhh-heeeccCccHHHH
Confidence 77899999 99999999999999998 678999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCc---cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccC----------
Q 046258 763 RKVARLQMKDVAIRLAERGVA---LAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEI---------- 829 (900)
Q Consensus 763 ~~I~~~~l~~~~~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~---------- 829 (900)
.+|+.++|. .+.+...|++ +.++++++..|+++ |.++.|+|.|++-|+. |++..+-.+..+.-
T Consensus 589 v~IA~~yLi--p~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iek-I~Rk~Al~vv~~~~~~~~~~~~~~ 664 (906)
T KOG2004|consen 589 VKIAERYLI--PQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEK-ICRKVALKVVEGENSKEESAEKNG 664 (906)
T ss_pred HHHHHHhhh--hHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHH-HHHHHHHHHHHhhccccccccccc
Confidence 999999998 6666777776 89999999999975 8999999999999965 44444444444331
Q ss_pred --------------------CC---------------------------------------------CCEEEEEec--CC
Q 046258 830 --------------------DE---------------------------------------------NSTVYIDAS--PK 842 (900)
Q Consensus 830 --------------------~~---------------------------------------------~~~~~v~~~--~~ 842 (900)
.+ |+++.|+.. .+
T Consensus 665 ~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~ 744 (906)
T KOG2004|consen 665 RESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRG 744 (906)
T ss_pred ccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHHHHhccCCCeeEEEEEEecCCCeEEEEEEEEecc
Confidence 00 677777766 23
Q ss_pred --CCeEEEEEecCCcccccccc-------------------ccccccccCCCC--CCCCchhHHh
Q 046258 843 --GDNLVYRVQKNGGFVDAATG-------------------RKSDVLIQIPNG--PRTDPSQAVK 884 (900)
Q Consensus 843 --~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~p~~--~~~~~~~~~~ 884 (900)
.|.+..+++++++|++|+.- ...+||+|+|+| |||||||-.+
T Consensus 745 ~~~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~p~n~~l~~~~IHlH~PeGAtpKDGPSAGvT 809 (906)
T KOG2004|consen 745 LGDGSLEITGQLGDVMKESAQIAYTWARAFLSKKEPENKFLENSDIHLHVPEGATPKDGPSAGVT 809 (906)
T ss_pred CCCCceEEecchHHHHHHHHHHHHHHHHHHHHhhCcccchhcccceeeeccCCCCCCcCCcccch
Confidence 37799999999999999985 455999999999 9999999654
No 12
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=3e-44 Score=434.35 Aligned_cols=500 Identities=22% Similarity=0.350 Sum_probs=373.5
Q ss_pred CcEEEEEec-CHHHHHHHhhccHHHHcccceeeecC--CChHHHHHHHHHHHHHHhcccCc----ccChhHHHHHHHHhh
Q 046258 307 GQLRCIGAT-TLEEYRKYVEKDAAFERRFQQVYVAE--PSVPDTVSILRGLKEKYEGHHGV----RIQDRALVVAAQLSA 379 (900)
Q Consensus 307 g~irvI~at-t~~~~~~~~~~d~al~~Rf~~i~i~~--P~~~e~~~ilr~l~~~~~~~~~v----~i~~eal~~l~~~s~ 379 (900)
|.+.+++.+ .+....++...+|++..+...+.-.. ++..+..++.+.+.+.+.++... ..+++.+..+..
T Consensus 79 G~~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~--- 155 (775)
T TIGR00763 79 ATYKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALED--- 155 (775)
T ss_pred CeEEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhc---
Confidence 555555554 33333333335666655554443211 23344556666666665544321 233332222221
Q ss_pred hhccCCCChhhHHHHHHHHHHHhhhh-ccCChhHHHHHH--------HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Q 046258 380 RYITGRHLPDKAIDLVDEACANVRVQ-LDSQPEEIDNLE--------RKRMQLEIELHALEKEKDKASKARLVEVRKELD 450 (900)
Q Consensus 380 ~~~~~~~~p~~a~~Lld~a~a~~~~~-~~~~~~~l~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 450 (900)
.+++..+.|.+++.+.+. ...++..|+..+ ..+...+.++..+++++..++++++++.|++|
T Consensus 156 --------~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~- 226 (775)
T TIGR00763 156 --------IDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREY- 226 (775)
T ss_pred --------cCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 236778999999999887 777666654433 33444456777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccC
Q 046258 451 DLRDKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTE 530 (900)
Q Consensus 451 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 530 (900)
+||||+++|++++++..+..+++.+|++|++++..+ ......+.+++++++ .+...
T Consensus 227 ~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~-----------------~~~~~~~~~e~~~~~-------~~~~~ 282 (775)
T TIGR00763 227 YLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLP-----------------EEVKKVIEKELTKLS-------LLEPS 282 (775)
T ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHHH-------cCCCC
Confidence 999999999999997655667888999999885544 444455889999999 66677
Q ss_pred CCChhhHHHHHHHHhcCCccccChh----------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCch
Q 046258 531 TVGPDQIAEVVSRWTGIPVTRLGQN----------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVG 600 (900)
Q Consensus 531 ~~~~~~i~~~i~~~~~~~~~~~~~~----------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtG 600 (900)
+.+...+++|+++++++||.+.... ..+.++|++.+.+.|.+.+...... ..+..| ++||+||||||
T Consensus 283 ~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~-~~~~~~--~lll~GppG~G 359 (775)
T TIGR00763 283 SSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR-GKMKGP--ILCLVGPPGVG 359 (775)
T ss_pred CchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh-cCCCCc--eEEEECCCCCC
Confidence 7888999999999999999876554 2345788999999888866544221 112233 69999999999
Q ss_pred HHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh--CCCeEEEEccccccCHHH--
Q 046258 601 KTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR--RPYSVVLFDEVEKAHISV-- 676 (900)
Q Consensus 601 KT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~--~~~~vlllDEidk~~~~~-- 676 (900)
||++|++||+.+.. +|++++++.+. +.+.+.|+..+|+|...+... +.+.. ..++||||||||+++++.
T Consensus 360 KT~lAk~iA~~l~~---~~~~i~~~~~~---~~~~i~g~~~~~~g~~~g~i~-~~l~~~~~~~~villDEidk~~~~~~~ 432 (775)
T TIGR00763 360 KTSLGKSIAKALNR---KFVRFSLGGVR---DEAEIRGHRRTYVGAMPGRII-QGLKKAKTKNPLFLLDEIDKIGSSFRG 432 (775)
T ss_pred HHHHHHHHHHHhcC---CeEEEeCCCcc---cHHHHcCCCCceeCCCCchHH-HHHHHhCcCCCEEEEechhhcCCccCC
Confidence 99999999999965 89999998753 346788888999998876544 34432 245799999999997754
Q ss_pred --HHHHHHHhh---CCeeecCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc
Q 046258 677 --FNTLLQVLD---DGRLTDGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE 750 (900)
Q Consensus 677 --~~~Ll~~ld---~g~~~d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~ 750 (900)
.+.|+++|| ++.|.|++ +..+++++++||+|||. ...++++|++|| .
T Consensus 433 ~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~--------------------------~~~i~~~L~~R~-~ 485 (775)
T TIGR00763 433 DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS--------------------------IDTIPRPLLDRM-E 485 (775)
T ss_pred CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC--------------------------chhCCHHHhCCe-e
Confidence 589999998 47788887 88899999999999997 356899999999 6
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC---ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH-c
Q 046258 751 IVVFDPLSHEQLRKVARLQMKDVAIRLAERGV---ALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV-R 826 (900)
Q Consensus 751 ~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~---~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~-~ 826 (900)
+|.|++|+.+++..|++.++. .+.+..+|+ .+.++++++.+|++ +|+.++|+|+|++.+++.+... +..++ .
T Consensus 486 vi~~~~~~~~e~~~I~~~~l~--~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~-~~~~~~~ 561 (775)
T TIGR00763 486 VIELSGYTEEEKLEIAKKYLI--PKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKA-AVKLVEQ 561 (775)
T ss_pred EEecCCCCHHHHHHHHHHHHH--HHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHH-HHHHHhc
Confidence 899999999999999999986 455555555 47899999999997 6999999999999998877665 45444 2
Q ss_pred ccCCC---------------------------------------------CCEEEEEec--CCCCeEEEEEecCCccccc
Q 046258 827 EEIDE---------------------------------------------NSTVYIDAS--PKGDNLVYRVQKNGGFVDA 859 (900)
Q Consensus 827 ~~~~~---------------------------------------------~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ 859 (900)
+.... |..+.|++. +|.++|.+++..+++|+++
T Consensus 562 ~~~~~~~~~~v~i~~~~~~~~lg~~~~~~~~~~~~~~~G~v~gla~~~~~g~~~~iE~~~~~G~~~~~~tG~~~~~~kES 641 (775)
T TIGR00763 562 GEKKKSEAESVVITPDNLKKYLGKPVFTYERAYEVTPPGVVMGLAWTPMGGDTLFIETTKVAGKGSLELTGQLGDVMKES 641 (775)
T ss_pred cCcccCCcccccCCHHHHHHhcCccccccchhccCCCCeEEEEEEEeCCCcEEEEEEEEEeCCCceEEEeCCchHHHHHH
Confidence 33210 566777776 6889999999999999998
Q ss_pred ccc-------------------ccccccccCCCC--CCCCchhHH
Q 046258 860 ATG-------------------RKSDVLIQIPNG--PRTDPSQAV 883 (900)
Q Consensus 860 ~~~-------------------~~~~~~~~~p~~--~~~~~~~~~ 883 (900)
+.. ...|+|+|+|.| |||||||--
T Consensus 642 ~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~l 686 (775)
T TIGR00763 642 AQIALTYVRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGI 686 (775)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchH
Confidence 876 346999999999 999999843
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-41 Score=364.95 Aligned_cols=506 Identities=21% Similarity=0.305 Sum_probs=330.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|.++-|.+..+..|.+.+.. ..+..+||+||||||||.+|++||..+ +++|+.++.
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isA 256 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISA 256 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecc
Confidence 3477788999988888876642 466789999999999999999999998 777999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCCh----hhHHHhHhhhhh--------cCcEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS----MDAANLFKPMLA--------RGQLRC 311 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~--------~g~irv 311 (900)
.++++|. .|+.|++++.+|+.+.+.. |||+||||||.+.+.+.. +. ..+...|+..|. ...+.|
T Consensus 257 peivSGv--SGESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlV 332 (802)
T KOG0733|consen 257 PEIVSGV--SGESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLV 332 (802)
T ss_pred hhhhccc--CcccHHHHHHHHHHHhccC-CeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEE
Confidence 9999974 7999999999999998766 999999999999998876 22 234556665553 246999
Q ss_pred EEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCCh
Q 046258 312 IGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p 388 (900)
||+||+++. +||+|+| ||+. |.+..|+...|..||+.+++...... +--...++.++.+|...
T Consensus 333 IgATnRPDs-----lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGfVGA---- 398 (802)
T KOG0733|consen 333 IGATNRPDS-----LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGFVGA---- 398 (802)
T ss_pred EecCCCCcc-----cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCccch----
Confidence 999999885 8999999 9985 99999999999999999998632221 22346788999888776
Q ss_pred hhHHHHHHHHHHHhh---hhccCChh-HHHHHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 389 DKAIDLVDEACANVR---VQLDSQPE-EIDNLERK-RMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRY 463 (900)
Q Consensus 389 ~~a~~Lld~a~a~~~---~~~~~~~~-~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 463 (900)
+...|+-+|+...- +.....|. .....+.. -...+.+-.++..+......-.++++. +..|
T Consensus 399 -DL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~-------------~~~i 464 (802)
T KOG0733|consen 399 -DLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVV-------------QDAI 464 (802)
T ss_pred -hHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHH-------------HHHH
Confidence 77777776664321 11101000 00000000 000000000010000000000000000 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHH
Q 046258 464 KKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSR 543 (900)
Q Consensus 464 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 543 (900)
....+... .+.++.+ .-.+.++...+...+..+..+.......|+|++|...-.-
T Consensus 465 ~~~~d~~S-----~E~~~~L--------------------~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~v 519 (802)
T KOG0733|consen 465 LNNPDPLS-----KELLEGL--------------------SIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEV 519 (802)
T ss_pred HhCCCCcC-----hHHhccc--------------------eecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHH
Confidence 00000000 0000000 0112334555666666554444445566777766433221
Q ss_pred HhcCCccccChhHHHHHhcHHHHHHH-HHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEe
Q 046258 544 WTGIPVTRLGQNEKERLIGLAEAVNA-VAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRI 622 (900)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~g~~~av~~-l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i 622 (900)
-..+ ..||.. +...=.-.+.|+.. | ..||||||||||||.|||++|.... .+|+.+
T Consensus 520 R~eL----------------~~aI~~PiK~pd~~k~lGi~~---P-sGvLL~GPPGCGKTLlAKAVANEag---~NFisV 576 (802)
T KOG0733|consen 520 RLEL----------------NMAILAPIKRPDLFKALGIDA---P-SGVLLCGPPGCGKTLLAKAVANEAG---ANFISV 576 (802)
T ss_pred HHHH----------------HHHHhhhccCHHHHHHhCCCC---C-CceEEeCCCCccHHHHHHHHhhhcc---CceEee
Confidence 0000 000100 11000011234442 3 4799999999999999999999884 489999
Q ss_pred cccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhCCee
Q 046258 623 DMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRL 689 (900)
Q Consensus 623 ~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~ 689 (900)
-..++.+. |||.++. ++++...+.+..|||||||||.+-| .+.|.||.-||...
T Consensus 577 KGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~- 643 (802)
T KOG0733|consen 577 KGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE- 643 (802)
T ss_pred cCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc-
Confidence 88876553 8888775 4455566666779999999998754 38899999999543
Q ss_pred ecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHH
Q 046258 690 TDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVAR 767 (900)
Q Consensus 690 ~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~ 767 (900)
+-.++.+|++||.+ .-++|+++ +|||.+..+.+++.+|...|++
T Consensus 644 --------~R~gV~viaATNRP--------------------------DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 644 --------ERRGVYVIAATNRP--------------------------DIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred --------cccceEEEeecCCC--------------------------cccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 33678999999985 45789998 6999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 046258 768 LQMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVRE 827 (900)
Q Consensus 768 ~~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~ 827 (900)
...+. ....+++++ ++.|+...-..+|...+|..+++.+-..+|-+.+...
T Consensus 690 ~~tkn---------~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 690 TITKN---------TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred HHhcc---------CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 88771 234555555 6677766444567777999999999988888887754
No 14
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=327.62 Aligned_cols=430 Identities=24% Similarity=0.341 Sum_probs=304.3
Q ss_pred CCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 179 DPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
+.+.|-...+..+...+. -+.+.++|++||||||||.+++++|++. ++.++.+|+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHH
Confidence 345565555555554332 1456789999999999999999999998 88899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CC-hhhHHHhHhhhhh----cCcEEEEEecCHHH
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EG-SMDAANLFKPMLA----RGQLRCIGATTLEE 319 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~-~~~~~~~L~~~l~----~g~irvI~att~~~ 319 (900)
++. ++.|+.+..++..|..+.....|.++||||++.+.+.+.. .+ .......|+.++. .+.+.||++|++..
T Consensus 254 li~--k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~ 331 (693)
T KOG0730|consen 254 LIS--KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD 331 (693)
T ss_pred HHH--hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc
Confidence 997 5789999999999999887766899999999999987655 33 3445555665554 57899999998876
Q ss_pred HHHHhhccHHHHc-ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHH
Q 046258 320 YRKYVEKDAAFER-RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDE 397 (900)
Q Consensus 320 ~~~~~~~d~al~~-Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~ 397 (900)
. +|++++| ||.. +.+..|+..+|..|++.+.+.+ +.. ++..+..++..+++|... +...++.+
T Consensus 332 s-----ld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvGa-----DL~~l~~e 396 (693)
T KOG0730|consen 332 S-----LDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVGA-----DLAALCRE 396 (693)
T ss_pred c-----cChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhHH-----HHHHHHHH
Confidence 4 8999998 9975 9999999999999999988873 222 567788889999888765 55555554
Q ss_pred HHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 398 ACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLK 477 (900)
Q Consensus 398 a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 477 (900)
++...... ++.
T Consensus 397 a~~~~~r~-------------------------------------------------~~~-------------------- 407 (693)
T KOG0730|consen 397 ASLQATRR-------------------------------------------------TLE-------------------- 407 (693)
T ss_pred HHHHHhhh-------------------------------------------------hHH--------------------
Confidence 44221100 000
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhHH
Q 046258 478 QKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEK 557 (900)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 557 (900)
+| +..+.........+-.+-...+++++|
T Consensus 408 -----------------~~--------------~~A~~~i~psa~Re~~ve~p~v~W~dI-------------------- 436 (693)
T KOG0730|consen 408 -----------------IF--------------QEALMGIRPSALREILVEMPNVSWDDI-------------------- 436 (693)
T ss_pred -----------------HH--------------HHHHhcCCchhhhheeccCCCCChhhc--------------------
Confidence 00 000000000000000011123333333
Q ss_pred HHHhcHHHHHHHHHHHHH--------HHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 558 ERLIGLAEAVNAVAESVL--------RSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~--------~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
=|+++.-+.+..++. -.+.|+. |...+||+||||||||++||++|..... +|+.+.+.++..
T Consensus 437 ---GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~----ppkGVLlyGPPGC~KT~lAkalAne~~~---nFlsvkgpEL~s 506 (693)
T KOG0730|consen 437 ---GGLEELKRELQQAVEWPLKHPEKFARFGIS----PPKGVLLYGPPGCGKTLLAKALANEAGM---NFLSVKGPELFS 506 (693)
T ss_pred ---cCHHHHHHHHHHHHhhhhhchHHHHHhcCC----CCceEEEECCCCcchHHHHHHHhhhhcC---CeeeccCHHHHH
Confidence 233333333333222 1233433 3337999999999999999999999854 899999887654
Q ss_pred ccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCce
Q 046258 630 QHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
. |+|.++. +.++...++...+|+||||||.+. ..|++.||..||...
T Consensus 507 k------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-------- 566 (693)
T KOG0730|consen 507 K------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-------- 566 (693)
T ss_pred H------------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc--------
Confidence 3 7776664 345555666666999999999753 347899999998532
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
..+++++|++||.+ ..++++|++ |||.+|.+++++.+...+|++.+++
T Consensus 567 -~~k~V~ViAATNRp--------------------------d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k--- 616 (693)
T KOG0730|consen 567 -ALKNVLVIAATNRP--------------------------DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK--- 616 (693)
T ss_pred -ccCcEEEEeccCCh--------------------------hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh---
Confidence 23789999999985 568999997 9999999999999999999999988
Q ss_pred HHHHhcCCccccCHH-HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 775 IRLAERGVALAVTDA-ALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
+..++++ -++.|+.. +..|+.++|..+++++....+.+-+.
T Consensus 617 --------kmp~~~~vdl~~La~~--T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 617 --------KMPFSEDVDLEELAQA--TEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred --------cCCCCccccHHHHHHH--hccCChHHHHHHHHHHHHHHHHHhcc
Confidence 4556666 46777753 34466789999999988888877665
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4e-31 Score=320.12 Aligned_cols=455 Identities=24% Similarity=0.388 Sum_probs=292.5
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++++.+.+.- ..+.++||+||||||||++|++||..+ +.+++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 3567789999999888876631 345679999999999999999999988 66799999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC-Ch--hhHHHhHhhhh----hcCcEEEEEec
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-GS--MDAANLFKPML----ARGQLRCIGAT 315 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~-~~--~~~~~~L~~~l----~~g~irvI~at 315 (900)
++.+.. ++.|+.+..++.+|..+.... ++||||||+|.+.+.++.. +. ....+.|..++ .++.+.+|++|
T Consensus 245 ~~~i~~--~~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 245 GPEIMS--KYYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred cHHHhc--ccccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 988875 567888899999998877654 7889999999998776542 22 23445666665 35778999999
Q ss_pred CHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCccc-ChhHHHHHHHHhhhhccCCCChhhH
Q 046258 316 TLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRI-QDRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i-~~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
|+... .|+++.+ ||.. +.+..|+..+|.+||+..... ..+ .+..+..++..+.+|... +.
T Consensus 322 n~~~~-----ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~~ga-----dl 385 (733)
T TIGR01243 322 NRPDA-----LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGFVGA-----DL 385 (733)
T ss_pred CChhh-----cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCCCHH-----HH
Confidence 87764 7899988 8975 888999999999999854433 222 233456677777666432 44
Q ss_pred HHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 392 IDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERID 471 (900)
Q Consensus 392 ~~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 471 (900)
..++..++....-. .+....... +. . .+..+.
T Consensus 386 ~~l~~~a~~~al~r-------------~~~~~~~~~-----~~-----~-----------------~i~~~~-------- 417 (733)
T TIGR01243 386 AALAKEAAMAALRR-------------FIREGKINF-----EA-----E-----------------EIPAEV-------- 417 (733)
T ss_pred HHHHHHHHHHHHHH-------------Hhhcccccc-----cc-----c-----------------cccchh--------
Confidence 44444444221100 000000000 00 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccc
Q 046258 472 EIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTR 551 (900)
Q Consensus 472 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 551 (900)
++.+. ....+ +.+.+...+ +...+.++.. .|
T Consensus 418 --------~~~~~------v~~~d--------------f~~Al~~v~---------------ps~~~~~~~~---~~--- 448 (733)
T TIGR01243 418 --------LKELK------VTMKD--------------FMEALKMVE---------------PSAIREVLVE---VP--- 448 (733)
T ss_pred --------ccccc------ccHHH--------------HHHHHhhcc---------------ccccchhhcc---cc---
Confidence 00000 00000 111111111 0001111000 01
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
...+..+.|++.+.+.+.+.+... ..|+ +|...+||+||||||||++|+++|..+. .+|+.++
T Consensus 449 --~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lakalA~e~~---~~fi~v~ 519 (733)
T TIGR01243 449 --NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI----RPPKGVLLFGPPGTGKTLLAKAVATESG---ANFIAVR 519 (733)
T ss_pred --ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEe
Confidence 112345667776666666655421 1122 2334699999999999999999999985 4899999
Q ss_pred ccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH------------HHHHHHHHHhhCCee
Q 046258 624 MSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI------------SVFNTLLQVLDDGRL 689 (900)
Q Consensus 624 ~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~------------~~~~~Ll~~ld~g~~ 689 (900)
++++.. .|+|..+. +.++...+....+||||||||.+.+ .+.+.|+..|+.-.
T Consensus 520 ~~~l~~------------~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~- 586 (733)
T TIGR01243 520 GPEILS------------KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ- 586 (733)
T ss_pred hHHHhh------------cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-
Confidence 877543 25665543 3344555566779999999998732 35677888887411
Q ss_pred ecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHH
Q 046258 690 TDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVAR 767 (900)
Q Consensus 690 ~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~ 767 (900)
...+++||+|||.+ ..++|+++. |||.++.|++++.++..+|++
T Consensus 587 --------~~~~v~vI~aTn~~--------------------------~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 587 --------ELSNVVVIAATNRP--------------------------DILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred --------CCCCEEEEEeCCCh--------------------------hhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 23579999999984 457899985 999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCccccCHH-HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 768 LQMKDVAIRLAERGVALAVTDA-ALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 768 ~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
.++.. ..++++ .++.|+.. +..|...+|+.++..+....+.+.+.
T Consensus 633 ~~~~~-----------~~~~~~~~l~~la~~--t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 633 IHTRS-----------MPLAEDVDLEELAEM--TEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred HHhcC-----------CCCCccCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 66541 222222 25666643 34566889999998888887776554
No 16
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.97 E-value=4.9e-31 Score=290.54 Aligned_cols=253 Identities=24% Similarity=0.365 Sum_probs=201.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCC----CC-----CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGR----PQ-----QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~----~~-----~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
+.++||++|++.++.++..++.++.. +. .+.+++||+||||||||++|++||+.+. .+|..++++.+.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~---~pf~~~da~~L~ 153 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN---VPFAIADATTLT 153 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC---CCeEEechhhcc
Confidence 45899999999999999877776643 11 1246899999999999999999999884 488888887642
Q ss_pred cccccccccCCCCCCcccccccchhHHHHhC-------CCeEEEEccccccCH--------------HHHHHHHHHhhCC
Q 046258 629 EQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR-------PYSVVLFDEVEKAHI--------------SVFNTLLQVLDDG 687 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~-------~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g 687 (900)
++||+|++..+.+...++.. .++||||||||++++ .+|+.||++|+ |
T Consensus 154 -----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G 221 (413)
T TIGR00382 154 -----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-G 221 (413)
T ss_pred -----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-c
Confidence 36799988777777766543 447999999999987 69999999995 8
Q ss_pred eeec---CCCceeecCCeEEEEccCC---------CcHHHhccc-----CCcc---c--h----HHHHHHHHHHH-Hhcc
Q 046258 688 RLTD---GQGRTVDFRNTVIIMTSNL---------GAEHLLSGM-----MGKV---T--M----QVARDQVLQEV-RKHF 740 (900)
Q Consensus 688 ~~~d---~~g~~~~~~~~~iI~tsn~---------~~~~~~~~~-----~~~~---~--~----~~~~~~~~~~~-~~~~ 740 (900)
++++ ..|+.++|.++++|+|||. +.+.+.... .+.. . . ..+.....+.+ +..|
T Consensus 222 ~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~ 301 (413)
T TIGR00382 222 TVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGL 301 (413)
T ss_pred cceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 8876 6789999999999999999 555544321 1111 0 0 11122223333 4469
Q ss_pred cHHHHhcccceeecCCCCHHHHHHHHHHH----HHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 741 RPELLNRLDEIVVFDPLSHEQLRKVARLQ----MKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~pl~~e~~~~I~~~~----l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.|||++|+|.++.|.||+.+++.+|+... ++++.+.+..+|+.+.++++++++|++.+|.+.+|||+|+++|++.+
T Consensus 302 ~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 302 IPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred HHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 99999999999999999999999999985 55556666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 046258 817 VTELSRMLV 825 (900)
Q Consensus 817 ~~~l~~~i~ 825 (900)
.+.+.+..-
T Consensus 382 ~~~m~e~p~ 390 (413)
T TIGR00382 382 LDVMFDLPS 390 (413)
T ss_pred HHHHhhCCC
Confidence 999987543
No 17
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=6.5e-30 Score=283.97 Aligned_cols=254 Identities=25% Similarity=0.361 Sum_probs=196.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCC-------CCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGR-------PQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 630 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~-------~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 630 (900)
+.++||+.|++.++.++..++..+.. ...+.+++||+||||||||++|++||+.+. .+|+.+||+.+.+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~---~pf~~id~~~l~~- 146 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD---VPFAIADATTLTE- 146 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC---CCceecchhhccc-
Confidence 34899999999998888655443322 123557899999999999999999999984 4999999987653
Q ss_pred cccccccCCCCCCcccccccchhHHH-------HhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCe-
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTEAV-------RRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGR- 688 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~~~-------~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~- 688 (900)
+||+|.+....+...+ ..++++||||||||++++ .+|+.||++||.+.
T Consensus 147 ----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~ 216 (412)
T PRK05342 147 ----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 216 (412)
T ss_pred ----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeE
Confidence 4688877666555443 345779999999999975 39999999998443
Q ss_pred -eecCCCceeecCCeEEEEccCC---------CcHHHhcc-----cCCccch----------HHHHHHHH-HH-HHhccc
Q 046258 689 -LTDGQGRTVDFRNTVIIMTSNL---------GAEHLLSG-----MMGKVTM----------QVARDQVL-QE-VRKHFR 741 (900)
Q Consensus 689 -~~d~~g~~~~~~~~~iI~tsn~---------~~~~~~~~-----~~~~~~~----------~~~~~~~~-~~-~~~~~~ 741 (900)
+++..|+..++.++++|.|+|. +.+.+... ..+.... ....+.+. +. ....|.
T Consensus 217 ~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~ 296 (412)
T PRK05342 217 SVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLI 296 (412)
T ss_pred EeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhh
Confidence 3566788888888888888888 44444321 1111100 11112221 22 344589
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHH----HHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVAR----LQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~----~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
|||++|+|.++.|.||+.+++.+|+. ..++++.+.+..+|+.+.++++++++|++.+|.+++|||+|+++|++.+.
T Consensus 297 PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~ 376 (412)
T PRK05342 297 PEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILL 376 (412)
T ss_pred HHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhH
Confidence 99999999999999999999999998 46677777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 046258 818 TELSRMLV 825 (900)
Q Consensus 818 ~~l~~~i~ 825 (900)
+.+.+...
T Consensus 377 ~~~~~~p~ 384 (412)
T PRK05342 377 DVMFELPS 384 (412)
T ss_pred HHHHhccc
Confidence 99977553
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-28 Score=269.41 Aligned_cols=459 Identities=20% Similarity=0.288 Sum_probs=290.3
Q ss_pred CCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 180 PVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
...+++..+..+.+++.-+ ....+||.|+||||||+++++.|.++ +.+++.+||.++.+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc
Confidence 3456777788888887642 12237899999999999999999999 9999999999998854
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-------cCcEEEEEecCHHHHHHH
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-------RGQLRCIGATTLEEYRKY 323 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~g~irvI~att~~~~~~~ 323 (900)
.+..+..+...+..++... ++|||+-.++.+..+...+.+......+...+. .+.+.+|++++..+-
T Consensus 472 --~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~--- 545 (953)
T KOG0736|consen 472 --ASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED--- 545 (953)
T ss_pred --cchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc---
Confidence 5677888999999888776 899999999998754433223333444443333 456888888876653
Q ss_pred hhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccCh-hHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 324 VEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQD-RALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 324 ~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~-eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
..+.+++-|- .|.++.|+.++|.+||+++..... ++. .-+..++..+..| .+.+...+++.+.-.
T Consensus 546 --lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gf-----s~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 546 --LPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGF-----SFGDLEALVAHSSLA 612 (953)
T ss_pred --CCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCC-----CHHHHHHHhcCchHH
Confidence 6677777664 488899999999999998876522 222 2223334433332 222332222221000
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 402 VRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQKRE 481 (900)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 481 (900)
.....+.. . +.. .++++...
T Consensus 613 ----------~~~~i~~~---------~---------------l~g----------~~~~~~~~---------------- 632 (953)
T KOG0736|consen 613 ----------AKTRIKNK---------G---------------LAG----------GLQEEDEG---------------- 632 (953)
T ss_pred ----------HHHHHHhh---------c---------------ccc----------cchhcccc----------------
Confidence 00000000 0 000 00000000
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhHHHHHh
Q 046258 482 ELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLI 561 (900)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~ 561 (900)
..+. ....-...++.+.+.+++... +..+|-| ++..-.|+.+=
T Consensus 633 ~~~~---------------~~~~l~~edf~kals~~~~~f--------------------s~aiGAP--KIPnV~WdDVG 675 (953)
T KOG0736|consen 633 ELCA---------------AGFLLTEEDFDKALSRLQKEF--------------------SDAIGAP--KIPNVSWDDVG 675 (953)
T ss_pred cccc---------------ccceecHHHHHHHHHHHHHhh--------------------hhhcCCC--CCCccchhccc
Confidence 0000 000001122344444444222 1112221 22222334455
Q ss_pred cHHHHHHHHHHHHHH-----HhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 562 GLAEAVNAVAESVLR-----SRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 562 g~~~av~~l~~~i~~-----~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
|++++-..|.+.|+. ...+.. -++...+||+||||||||.+||++|..+.- .|..+...++.+.
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVATEcsL---~FlSVKGPELLNM------ 744 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVATECSL---NFLSVKGPELLNM------ 744 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHhhcee---eEEeecCHHHHHH------
Confidence 677777777777755 111111 233447999999999999999999999844 6777777665432
Q ss_pred cCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCHH-------------HHHHHHHHhhCCeeecCCCceeecCC
Q 046258 637 IGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHIS-------------VFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 637 ~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~~-------------~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
|+|.++. +.+++..|.+..|||||||+|.+.|. +...||.-||. +.|+ +...
T Consensus 745 ------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg--ls~~-----~s~~ 811 (953)
T KOG0736|consen 745 ------YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG--LSDS-----SSQD 811 (953)
T ss_pred ------HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc--ccCC-----CCCc
Confidence 8887775 44666777777899999999998764 67888888883 1111 3457
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCC-CHHHHHHHHHHHHHHHHHHHH
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPL-SHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl-~~e~~~~I~~~~l~~~~~~~~ 778 (900)
+++|.+||.+ .-++|+|+ +|||..+...|- +.+....+++..-+
T Consensus 812 VFViGATNRP--------------------------DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr------- 858 (953)
T KOG0736|consen 812 VFVIGATNRP--------------------------DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR------- 858 (953)
T ss_pred eEEEecCCCc--------------------------cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH-------
Confidence 8899999985 45789998 699999999884 44777777666555
Q ss_pred hcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 779 ERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 779 ~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
++.+++++ +..++.. .++++...+|-.++..+...++.+.+..
T Consensus 859 ----kFkLdedVdL~eiAk~-cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 859 ----KFKLDEDVDLVEIAKK-CPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ----HccCCCCcCHHHHHhh-CCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34566655 4556654 5677777899999999999998887664
No 19
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-29 Score=273.33 Aligned_cols=265 Identities=19% Similarity=0.249 Sum_probs=223.3
Q ss_pred cccccCCCChhhHHHHHHHHhcCCccccCh--------hHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEecc
Q 046258 525 NLMLTETVGPDQIAEVVSRWTGIPVTRLGQ--------NEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGP 596 (900)
Q Consensus 525 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--------~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp 596 (900)
++|+.+|++.+.+...+.+.+.......+. .....++|++.+|+++.+.+.+. .....++|++|+
T Consensus 100 ~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kv-------A~s~a~VLI~GE 172 (464)
T COG2204 100 FDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKV-------APSDASVLITGE 172 (464)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHHHH-------hCCCCCEEEECC
Confidence 589999999999999999988754322111 23457999999999999999888 344457999999
Q ss_pred CCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHH
Q 046258 597 TGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHIS 675 (900)
Q Consensus 597 ~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~ 675 (900)
+||||..+||+||+...+.+.|||.+||+.+.+....++||||..|-+ |.. ..-.+.+..+.+++||||||..+|.+
T Consensus 173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~--~~r~G~fE~A~GGTLfLDEI~~mpl~ 250 (464)
T COG2204 173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAI--TRRIGRFEQANGGTLFLDEIGEMPLE 250 (464)
T ss_pred CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcc--cccCcceeEcCCceEEeeccccCCHH
Confidence 999999999999999999999999999999999999999999976532 221 11223455678899999999999999
Q ss_pred HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeec
Q 046258 676 VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVF 754 (900)
Q Consensus 676 ~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f 754 (900)
+|..||++|+++.|+.-.|...--.+++||++||.+.....+ .+.|+++|++|+.. .+..
T Consensus 251 ~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-------------------~G~FReDLyyRLnV~~i~i 311 (464)
T COG2204 251 LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-------------------AGRFREDLYYRLNVVPLRL 311 (464)
T ss_pred HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-------------------cCCcHHHHHhhhccceecC
Confidence 999999999999999877765555689999999999877766 78899999999975 4667
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 755 DPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 755 ~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
+||++ +|+.-++.+++.+++++++.. ...|+++++..|..|.||+| +|+|++++++++.-.-.
T Consensus 312 PpLRER~EDIp~L~~hfl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPGN--VREL~N~ver~~il~~~ 376 (464)
T COG2204 312 PPLRERKEDIPLLAEHFLKRFAAELGRP--PKGFSPEALAALLAYDWPGN--VRELENVVERAVILSEG 376 (464)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCChH--HHHHHHHHHHHHhcCCc
Confidence 77888 999999999999999887644 57899999999999999999 99999999997765433
No 20
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-26 Score=250.96 Aligned_cols=428 Identities=21% Similarity=0.263 Sum_probs=262.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
...|+||.||+|+|||.+|++++....... .+++..++|+.+... + ...+...++.+|..+.... |.|+++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~-~-~e~iQk~l~~vfse~~~~~-PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGS-S-LEKIQKFLNNVFSEALWYA-PSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccch-h-HHHHHHHHHHHHHHHHhhC-CcEEEE
Confidence 456899999999999999999999985322 567888999987532 2 4455566777777766655 889999
Q ss_pred cchhhhhhCCCCCChh--hHHHhHh--------hhhhcC-cEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCCh
Q 046258 279 DEIHLVLGAGRTEGSM--DAANLFK--------PMLARG-QLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSV 344 (900)
Q Consensus 279 DEi~~l~~~~~~~~~~--~~~~~L~--------~~l~~g-~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~ 344 (900)
|++|.|.++....++. ...+.|. .++.++ .+.+|++++.-.. .+|-|.+ +|+. +.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt-----l~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT-----LNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh-----cChhhcCccceEEEEecCCcch
Confidence 9999999843332222 2223332 333444 4688888865442 5666665 7775 67889999
Q ss_pred HHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhhhhccCC-hhHHHHHHHHHHHH
Q 046258 345 PDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQLDSQ-PEEIDNLERKRMQL 423 (900)
Q Consensus 345 ~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~~~~~~~-~~~l~~~~~~~~~~ 423 (900)
.+|.+||+.+..+- ...+..+.+..++..+.+|... +..-++|.+.....+...+. +..+
T Consensus 576 ~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~~-----DL~ifVeRai~~a~leris~~~kll---------- 636 (952)
T KOG0735|consen 576 TRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLAT-----DLVIFVERAIHEAFLERISNGPKLL---------- 636 (952)
T ss_pred hHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccch-----hHHHHHHHHHHHHHHHHhccCcccc----------
Confidence 99999999888752 2334555566677777777443 55555555553332111110 0000
Q ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 046258 424 EIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLR 503 (900)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 503 (900)
.++..++..+ +|-+
T Consensus 637 --------------tke~f~ksL~-----------------------------------------------~F~P----- 650 (952)
T KOG0735|consen 637 --------------TKELFEKSLK-----------------------------------------------DFVP----- 650 (952)
T ss_pred --------------hHHHHHHHHH-----------------------------------------------hcCh-----
Confidence 0000000000 0000
Q ss_pred hhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHH------
Q 046258 504 YGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRS------ 577 (900)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~------ 577 (900)
-.+...+.. +-+|+.|.. +-|..++.+.+.+.+..-
T Consensus 651 --------~aLR~ik~~----------------------k~tgi~w~d--------igg~~~~k~~l~~~i~~P~kyp~i 692 (952)
T KOG0735|consen 651 --------LALRGIKLV----------------------KSTGIRWED--------IGGLFEAKKVLEEVIEWPSKYPQI 692 (952)
T ss_pred --------HHhhhcccc----------------------ccCCCCcee--------cccHHHHHHHHHHHHhccccchHH
Confidence 000000000 001111111 112222222222222110
Q ss_pred hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHH
Q 046258 578 RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEA 655 (900)
Q Consensus 578 ~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~ 655 (900)
... .|-+-...+||+||||||||.||.++|....- .||.+...++. ++ |+|.++. +.++..
T Consensus 693 f~~--~plr~~~giLLyGppGcGKT~la~a~a~~~~~---~fisvKGPElL-----~K-------yIGaSEq~vR~lF~r 755 (952)
T KOG0735|consen 693 FAN--CPLRLRTGILLYGPPGCGKTLLASAIASNSNL---RFISVKGPELL-----SK-------YIGASEQNVRDLFER 755 (952)
T ss_pred Hhh--CCcccccceEEECCCCCcHHHHHHHHHhhCCe---eEEEecCHHHH-----HH-------HhcccHHHHHHHHHH
Confidence 000 11122346999999999999999999988743 67777776543 33 5555554 446666
Q ss_pred HHhCCCeEEEEccccccCHH-----------HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccc
Q 046258 656 VRRRPYSVVLFDEVEKAHIS-----------VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVT 724 (900)
Q Consensus 656 ~~~~~~~vlllDEidk~~~~-----------~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~ 724 (900)
.+.+..||+||||+|.+.|. |.|.||..||.-. ....+.++++|..+
T Consensus 756 A~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------gl~GV~i~aaTsRp------------- 813 (952)
T KOG0735|consen 756 AQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------GLDGVYILAATSRP------------- 813 (952)
T ss_pred hhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------ccceEEEEEecCCc-------------
Confidence 67777899999999987653 8999999998422 13445566655542
Q ss_pred hHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHH-HHHHHHHcCCCC
Q 046258 725 MQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDA-ALDIVLAESYDP 801 (900)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~ 801 (900)
..++|+|+ +|+|..+..+.+++.+..+|++..-. .+..+++ .++.++.. +.
T Consensus 814 -------------dliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~-----------s~~~~~~vdl~~~a~~--T~ 867 (952)
T KOG0735|consen 814 -------------DLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN-----------SLLKDTDVDLECLAQK--TD 867 (952)
T ss_pred -------------cccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh-----------ccCCccccchHHHhhh--cC
Confidence 45789998 59999999999999999999876655 2333333 35666643 34
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHccc
Q 046258 802 IYGARPIRRWLEKKVVTELSRMLVREE 828 (900)
Q Consensus 802 ~~g~R~L~~~i~~~i~~~l~~~i~~~~ 828 (900)
+|...+|..++..+-...+-+++...+
T Consensus 868 g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 868 GFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 455669999998888887777776554
No 21
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=7.2e-28 Score=258.99 Aligned_cols=228 Identities=21% Similarity=0.333 Sum_probs=196.8
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.|||++.||..+.+.+... .+...+||+.|++||||..+||+||+...+.++|||.+||+.+.+...+|+|||
T Consensus 224 ~iIG~S~am~~ll~~i~~V-------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG 296 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV-------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG 296 (550)
T ss_pred cceecCHHHHHHHHHHHHH-------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhc
Confidence 5899999999999999887 344457999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccchhHHHHh-------CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCC
Q 046258 639 APPGYVGHEEGGQLTEAVRR-------RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 711 (900)
Q Consensus 639 ~~~g~~g~~~~~~l~~~~~~-------~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~ 711 (900)
|.. |.+++++.. +.++.||||||..+|..+|..||.+|++|.|..-.|...-.-+|++|++||.+
T Consensus 297 HeK--------GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 297 HEK--------GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred ccc--------cccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh
Confidence 854 445555443 45789999999999999999999999999999876655445689999999998
Q ss_pred cHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCH
Q 046258 712 AEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTD 788 (900)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 788 (900)
.+.+.. .+.|+.+|++|++. -+..+||++ +|+.-++..++.+++.+++.. .+.+++
T Consensus 369 L~~~V~-------------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~ 427 (550)
T COG3604 369 LEEMVR-------------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSA 427 (550)
T ss_pred HHHHHH-------------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCH
Confidence 776665 67899999999975 456677888 999999999999998876554 689999
Q ss_pred HHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 789 AALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 789 ~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
+|++.|.+|.||+| +|+|+++|++++... ++.+-
T Consensus 428 ~Al~~L~~y~wPGN--VRELen~veRavlla-~~~~~ 461 (550)
T COG3604 428 EALELLSSYEWPGN--VRELENVVERAVLLA-GRLTR 461 (550)
T ss_pred HHHHHHHcCCCCCc--HHHHHHHHHHHHHHh-cccCC
Confidence 99999999999999 999999999988765 44333
No 22
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=3.4e-27 Score=257.86 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=198.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
.+.|+|.+.++..+.+.+++. .+...++|+.|++||||..+|++||+.+.+.++|||.+||+.+.+...+|+|
T Consensus 244 f~~Iig~S~~m~~~~~~akr~-------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRI-------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhh-------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 456889999999999999887 4445689999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 637 IGAPPG-YVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 637 ~G~~~g-~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
||..+| |.|...+| =.+.+..+.++.||||||..+|...|..||++|+++.|..-.|...-..++++|++||.++..+
T Consensus 317 FGye~GAFTGA~~~G-K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 317 FGYEKGAFTGASKGG-KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred hCcCCccccccccCC-CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 998665 33433322 1234445678999999999999999999999999999998777766677899999999999888
Q ss_pred hcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Q 046258 716 LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALD 792 (900)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~ 792 (900)
.+ .+.|+.+|++|++. .|..+||++ +|+..++..+|.+++.+++.. ...++++++.
T Consensus 396 i~-------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~--v~~ls~~a~~ 454 (560)
T COG3829 396 IA-------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN--VKGLSPDALA 454 (560)
T ss_pred Hh-------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCC--cccCCHHHHH
Confidence 77 78999999999975 467777887 999999999999999887654 3459999999
Q ss_pred HHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 793 IVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 793 ~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
.|.+|.||+| +|+|+++|++.+.
T Consensus 455 ~L~~y~WPGN--VRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGN--VRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCch--HHHHHHHHHHHHh
Confidence 9999999999 9999999998775
No 23
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.94 E-value=3.1e-27 Score=232.32 Aligned_cols=154 Identities=57% Similarity=0.893 Sum_probs=133.2
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhc-CCCCceeEeccccccc----ccccccccCCCCCCcccccccchhHHHHhCC
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLF-DDENLLVRIDMSEYME----QHSVSRLIGAPPGYVGHEEGGQLTEAVRRRP 660 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~----~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~ 660 (900)
||.+++||+||+|||||++|++||+.++ ++..+++++||++|.+ .+.++.++|.+++|+++.+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 5888999999999999999999999999 8899999999999999 88888999999999887654
Q ss_pred CeEEEEccccccCH-----------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhccc-CCccchHHH
Q 046258 661 YSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVA 728 (900)
Q Consensus 661 ~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~-~~~~~~~~~ 728 (900)
+|||||||||+|+ .||+.||++||+|+++|.+|+.++++|++||||||.+........ .........
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~ 148 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQ 148 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHH
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHH
Confidence 3999999999999 999999999999999999999999999999999999987766421 112234455
Q ss_pred HHHHHHHHHhcccHHHHhcccce
Q 046258 729 RDQVLQEVRKHFRPELLNRLDEI 751 (900)
Q Consensus 729 ~~~~~~~~~~~~~~~ll~R~~~~ 751 (900)
.....+.+...|+|||++|||.+
T Consensus 149 ~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 149 EEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp CHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHcCCCHHHHccCCcC
Confidence 56677788999999999999764
No 24
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.93 E-value=6e-25 Score=239.71 Aligned_cols=228 Identities=23% Similarity=0.299 Sum_probs=186.1
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCC
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGA 639 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~ 639 (900)
++|.+.+++.+.+.+.+.. ....+|||+|++||||+.+|++||....+...||+.+||+.+.+....+.+||+
T Consensus 1 liG~S~~m~~~~~~~~~~a-------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 4688889999999998882 223469999999999999999999999888899999999998776666788998
Q ss_pred CCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcc
Q 046258 640 PPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSG 718 (900)
Q Consensus 640 ~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~ 718 (900)
..|.+ |... .-.+.+..+.+++||||||+.+++++|..|+++|+++.+....+...-..++++|+|||.+...+..
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 65532 3221 1223455667899999999999999999999999999987655544445689999999987765554
Q ss_pred cCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHH
Q 046258 719 MMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVL 795 (900)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~ 795 (900)
.+.|+++|++||+ ..|.++||++ +|+..++.+++.+++.+++.. +...+++++++.|.
T Consensus 151 ------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 151 ------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLP-LFPGFTPQAREQLL 211 (329)
T ss_pred ------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHH
Confidence 5789999999995 4788999996 999999999999887665432 11589999999999
Q ss_pred HcCCCCCCCchHHHHHHHHHHHH
Q 046258 796 AESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 796 ~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
.|.||+| +|+|+++|++++..
T Consensus 212 ~y~WPGN--vrEL~n~i~~~~~~ 232 (329)
T TIGR02974 212 EYHWPGN--VRELKNVVERSVYR 232 (329)
T ss_pred hCCCCch--HHHHHHHHHHHHHh
Confidence 9999999 99999999887664
No 25
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-23 Score=223.88 Aligned_cols=169 Identities=22% Similarity=0.351 Sum_probs=126.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHc-------
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA------- 270 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~------- 270 (900)
..-..+|||||||||||.+||-|.+.+... -| -.+|-..++. +|.|+.|+.++.+|..+++-
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAr-eP--------KIVNGPeIL~--KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAR-EP--------KIVNGPEILN--KYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCC-CC--------cccCcHHHHH--HhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 444568999999999999999999988433 23 2346667776 79999999999999988752
Q ss_pred CCCeEEEEcchhhhhhCCCC-CC----hhhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-ee
Q 046258 271 EGKVILFIDEIHLVLGAGRT-EG----SMDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VY 338 (900)
Q Consensus 271 ~~~~iL~iDEi~~l~~~~~~-~~----~~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~ 338 (900)
.+=.|+++||||.++..+.+ .| ...+.|+|+.=|. =.++-|||-||+.++ +|.+|.| ||++ ++
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl-----IDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL-----IDEALLRPGRLEVQME 397 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-----HHHHhcCCCceEEEEE
Confidence 22358999999999987665 22 2345677776554 247999999999887 8999999 9997 88
Q ss_pred ecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 339 VAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 339 i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
+..|+..-|.+|++....+..++.-+. ++--+..++.++..|-.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~-~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLS-ADVDLKELAALTKNFSG 441 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCC-CCcCHHHHHHHhcCCch
Confidence 999999999999988887766543322 23334566777765533
No 26
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.91 E-value=2.2e-23 Score=227.86 Aligned_cols=230 Identities=22% Similarity=0.288 Sum_probs=184.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI 637 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 637 (900)
+.++|.+.+++.+.+.+.+.. +...+|||+|++||||+.+|++|+....+...+|+.+||+.+.+....+.++
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 358899999999999998882 2223599999999999999999999888778899999999987655557788
Q ss_pred CCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 638 GAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 638 G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
|+..+.. |... . -.+.+..+.+++||||||+.+++.+|..|+.+|+++.+....+...-..+++||+||+.....+.
T Consensus 79 g~~~~~~~g~~~-~-~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 79 GHEAGAFTGAQK-R-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred cccccccCCccc-c-cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 8765432 2221 1 12344566789999999999999999999999999988764443333357899999998876655
Q ss_pred cccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Q 046258 717 SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDI 793 (900)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (900)
. .+.|+++|++||. ..|.++||++ +|+..++.+++.+++.+++.. +...++++++..
T Consensus 157 ~-------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~~s~~al~~ 216 (326)
T PRK11608 157 A-------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP-LFPGFTERARET 216 (326)
T ss_pred H-------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHH
Confidence 4 5789999999995 5788999988 899999999999876654332 125799999999
Q ss_pred HHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 794 VLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 794 l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
|..|.||+| +|+|++++++++..
T Consensus 217 L~~y~WPGN--vrEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGN--IRELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcH--HHHHHHHHHHHHHh
Confidence 999999999 99999999887653
No 27
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.90 E-value=4.1e-23 Score=211.98 Aligned_cols=226 Identities=19% Similarity=0.283 Sum_probs=194.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR 635 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 635 (900)
..+.+++.+..++.+....++... ... ++|+.|.+||||..+||+.+....+...||+.+||..+.+...+++
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~Am----lDA---PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAM----LDA---PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhc----cCC---CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHH
Confidence 356788999999999888776621 233 4999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 636 LIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 636 l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
+||+.||--|+. +.+..+.++.+|||||..++|..|..||.+|.+|.|+...+..--+-++++|+||..+...+
T Consensus 275 lFG~apg~~gk~------GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l 348 (511)
T COG3283 275 LFGHAPGDEGKK------GFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL 348 (511)
T ss_pred HhcCCCCCCCcc------chhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH
Confidence 999998844432 35566788999999999999999999999999999998664443456899999999998888
Q ss_pred hcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Q 046258 716 LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALD 792 (900)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~ 792 (900)
.+ +..|+.+|++|++. .+.++||++ +|+.-+++.++.+++.+++.. ..+++++.+.
T Consensus 349 v~-------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~ 407 (511)
T COG3283 349 VQ-------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLT 407 (511)
T ss_pred Hh-------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHH
Confidence 77 78899999999975 577888888 899999999999999876654 5789999999
Q ss_pred HHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 793 IVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 793 ~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+|.+|.|++| +|+|++.|.+++.
T Consensus 408 ~L~~y~WpGN--VRqL~N~iyRA~s 430 (511)
T COG3283 408 VLTRYAWPGN--VRQLKNAIYRALT 430 (511)
T ss_pred HHHHcCCCcc--HHHHHHHHHHHHH
Confidence 9999999999 9999999987664
No 28
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.90 E-value=4.9e-23 Score=236.11 Aligned_cols=229 Identities=19% Similarity=0.268 Sum_probs=187.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
...++|.+.+++.+.+.+++.. +...++||.|++||||+.+|++||....+.+.||+.+||+.+.+....+.|
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A-------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYA-------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHh-------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 3458899999999999998872 223469999999999999999999999888899999999999887777899
Q ss_pred cCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
+|+..|.+.....+.-...+..+.+++||||||+.+++.+|..|+++|+++.+....+...-..++++|+|||.+...+.
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 99876543221111123445566789999999999999999999999999988765544444457899999999876655
Q ss_pred cccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Q 046258 717 SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDI 793 (900)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (900)
. .+.|+++|++|++ ..|.++||++ +|+..++.+++.++...+ .+.+++++++.
T Consensus 364 ~-------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-----~~~~~~~a~~~ 419 (526)
T TIGR02329 364 Q-------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL-----RLPDSEAAAQV 419 (526)
T ss_pred h-------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-----CCCCCHHHHHH
Confidence 4 6789999999996 5788899988 899999999999876532 24689999888
Q ss_pred -------HHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 794 -------VLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 794 -------l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
|..|.||+| +|+|++++++++..
T Consensus 420 ~~~~~~~L~~y~WPGN--vrEL~nvier~~i~ 449 (526)
T TIGR02329 420 LAGVADPLQRYPWPGN--VRELRNLVERLALE 449 (526)
T ss_pred hHHHHHHHHhCCCCch--HHHHHHHHHHHHHh
Confidence 999999999 99999999987764
No 29
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.90 E-value=5.3e-23 Score=235.28 Aligned_cols=226 Identities=19% Similarity=0.286 Sum_probs=182.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHH--------hcCCCCceeEeccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQ--------LFDDENLLVRIDMSEYME 629 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~--------l~~~~~~~i~i~~~~~~~ 629 (900)
..++|.+.+++.+.+.+.+. .+...++||+|++||||+.+|++|+.. ..+.+.||+.+||+.+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~-------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLY-------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHH-------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 45889999999999999887 223346999999999999999999998 667788999999999988
Q ss_pred ccccccccCCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEcc
Q 046258 630 QHSVSRLIGAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 708 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~ts 708 (900)
....+.|||+..|.+ |... +.-.+.+..+.+++||||||+.+++.+|..|+++|+++.+....+...-..++++|++|
T Consensus 292 ~lleseLFG~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRR-GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhHHHHhcCCccccccCccc-cccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 777889999866543 3211 11223455667899999999999999999999999999988755544444578999999
Q ss_pred CCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 709 NLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 709 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
|.+...+.. .+.|+++|++|+.. .|.++||++ +|+..++.+++.++...++ ..
T Consensus 371 ~~~L~~~v~-------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~-----~~ 426 (538)
T PRK15424 371 HCDLEEDVR-------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS-----AP 426 (538)
T ss_pred CCCHHHHHh-------------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC-----CC
Confidence 998766554 57899999999964 678888988 8999999999997654332 23
Q ss_pred cCHHHH-------HHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 786 VTDAAL-------DIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 786 ~~~~a~-------~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
++++++ +.|..|.||+| +|+|++++++++.
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGN--vREL~nvier~~i 463 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGN--VRELRNLMERLAL 463 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCch--HHHHHHHHHHHHH
Confidence 555554 89999999999 9999999998776
No 30
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.6e-23 Score=209.87 Aligned_cols=263 Identities=25% Similarity=0.391 Sum_probs=197.4
Q ss_pred CCChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCC------CCCeEEEEeccCCchHHHH
Q 046258 531 TVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQ------QPTGSFLFLGPTGVGKTEL 604 (900)
Q Consensus 531 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~------~p~~~~ll~Gp~GtGKT~l 604 (900)
..+|.+|..+++.+ ++||+.|-+.++-++..++..+.... -...++|++||+|+|||.|
T Consensus 49 lPtP~eik~~Ld~Y---------------VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 49 LPTPKEIKAHLDEY---------------VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLL 113 (408)
T ss_pred CCChHHHHHHhhhh---------------eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHH
Confidence 45677788777765 68999887776665555443332211 1245799999999999999
Q ss_pred HHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCC-------CeEEEEccccccC----
Q 046258 605 AKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRP-------YSVVLFDEVEKAH---- 673 (900)
Q Consensus 605 A~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~-------~~vlllDEidk~~---- 673 (900)
|+.||+.+ +.||..-|+..+++ .||+|.+....+...+..+. .+++++|||||..
T Consensus 114 AqTLAk~L---nVPFaiADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 114 AQTLAKIL---NVPFAIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred HHHHHHHh---CCCeeeccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 99999999 55999999988776 68999998888888777544 4789999999974
Q ss_pred ----------HHHHHHHHHHhhCCee---ecCCCcee--------ecCCeEEEEccCC-CcHHHhcccCCc-------c-
Q 046258 674 ----------ISVFNTLLQVLDDGRL---TDGQGRTV--------DFRNTVIIMTSNL-GAEHLLSGMMGK-------V- 723 (900)
Q Consensus 674 ----------~~~~~~Ll~~ld~g~~---~d~~g~~~--------~~~~~~iI~tsn~-~~~~~~~~~~~~-------~- 723 (900)
..||++||.+++ |++ ....|++. |.+|.+||+..-+ |.+.+...+.+. .
T Consensus 180 N~SITRDVSGEGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~ 258 (408)
T COG1219 180 NPSITRDVSGEGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEV 258 (408)
T ss_pred CCCcccccCchHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccc
Confidence 348999999998 443 33446644 5556666655443 445554322111 1
Q ss_pred -c--h----HHHHHHHH--HHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH----HHHHHHHHHHhcCCccccCHHH
Q 046258 724 -T--M----QVARDQVL--QEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL----QMKDVAIRLAERGVALAVTDAA 790 (900)
Q Consensus 724 -~--~----~~~~~~~~--~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~----~l~~~~~~~~~~~~~~~~~~~a 790 (900)
+ . ..+...+. +-++..+-|+|.+|+..+..+.+|+++++.+|+.. .++++.+.|...++.+.|+++|
T Consensus 259 ~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~A 338 (408)
T COG1219 259 KSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEA 338 (408)
T ss_pred cchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHH
Confidence 0 1 11112222 33466789999999999999999999999999965 6778888888889999999999
Q ss_pred HHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 046258 791 LDIVLAESYDPIYGARPIRRWLEKKVVTELSRM 823 (900)
Q Consensus 791 ~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~ 823 (900)
++.+++.+..+..|||.|+.+++..+.+.+.+.
T Consensus 339 L~~IA~~A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 339 LKAIAKKAIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999888763
No 31
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.90 E-value=4.5e-23 Score=241.90 Aligned_cols=228 Identities=19% Similarity=0.294 Sum_probs=186.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI 637 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 637 (900)
..++|.+.+++.+.+.+++.. +...+|||+|++|||||++|++||....+...+|+.+||+.+.+....+.++
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a-------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA-------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh-------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 357899999999999998872 3334699999999999999999999998888899999999998776678899
Q ss_pred CCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 638 GAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 638 G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
|+..|.. |... .-.+.+..+.+++||||||+.+++.+|..|+++|+++.+....+......++++|+||+.+...+.
T Consensus 269 g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 269 GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 9876533 2211 111234455689999999999999999999999999998765554444457899999999876554
Q ss_pred cccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Q 046258 717 SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDI 793 (900)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (900)
. .+.|+++|++||+. .|.++||++ +|+..|+.+++.++..+++ ..+.+++++++.
T Consensus 347 ~-------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~---~~~~~s~~a~~~ 404 (534)
T TIGR01817 347 A-------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG---RPLTITPSAIRV 404 (534)
T ss_pred H-------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC---CCCCCCHHHHHH
Confidence 4 67899999999965 577888985 9999999999998776543 346899999999
Q ss_pred HHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 794 VLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 794 l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
|..|.||+| +|+|++++++++..
T Consensus 405 L~~~~WPGN--vrEL~~v~~~a~~~ 427 (534)
T TIGR01817 405 LMSCKWPGN--VRELENCLERTATL 427 (534)
T ss_pred HHhCCCCCh--HHHHHHHHHHHHHh
Confidence 999999999 99999999987754
No 32
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.90 E-value=8e-23 Score=237.40 Aligned_cols=229 Identities=21% Similarity=0.273 Sum_probs=187.3
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.++|++.+++.+.+.+.+.. ....+|||+|++|||||.+|++|+....+.+.+|+.+||+.+.+....+.|||
T Consensus 188 ~iig~s~~~~~~~~~i~~~a-------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG 260 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVA-------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFG 260 (509)
T ss_pred ceeecCHHHHHHHHHHHHHh-------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcC
Confidence 47889999999999998872 22336999999999999999999999988888999999999987666678999
Q ss_pred CCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 639 APPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 639 ~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
+..|.. |... .-...+..+.+++||||||+.+++++|..|+++|+++.+....+......++++|+|||.+...+..
T Consensus 261 ~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~ 338 (509)
T PRK05022 261 HVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR 338 (509)
T ss_pred ccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHH
Confidence 765532 2211 1112345567899999999999999999999999999887655444444688999999998766554
Q ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Q 046258 718 GMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIV 794 (900)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 794 (900)
.+.|+++|++|+.. .|.++||++ +|+..++.+++.++..+++.. .+.+++++++.|
T Consensus 339 -------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~L 397 (509)
T PRK05022 339 -------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR--SLRLSPAAQAAL 397 (509)
T ss_pred -------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHH
Confidence 67899999999965 488888988 899999999999887665433 468999999999
Q ss_pred HHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 795 LAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 795 ~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
..|.||+| +|+|+++|++++...
T Consensus 398 ~~y~WPGN--vrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGN--VRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCc--HHHHHHHHHHHHHhc
Confidence 99999999 999999999877653
No 33
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.89 E-value=9.5e-23 Score=220.92 Aligned_cols=233 Identities=19% Similarity=0.254 Sum_probs=190.5
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC-CCCceeEeccccccccc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD-DENLLVRIDMSEYMEQH 631 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~-~~~~~i~i~~~~~~~~~ 631 (900)
.......++|.+..++.+.+.++.. ... ..++|+.|+|||||+.+|+.||....+ ...|||.+||+.|.+..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----ap~---~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----APS---GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----CCC---CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 3445678999999999999999884 211 235999999999999999999977777 68999999999999998
Q ss_pred ccccccCCCCC-CcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 632 SVSRLIGAPPG-YVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 632 ~~~~l~G~~~g-~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
..++|||+..| |.|.. +.-.+.+.++.+++||||||..+++..|..|+++||+|.++.-.+......++++|++||.
T Consensus 146 ~~~eLFG~~kGaftGa~--~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 146 QEAELFGHEKGAFTGAQ--GGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred HHHHHhccccceeeccc--CCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 88999999776 44422 2234567778899999999999999999999999999999987776666778999999998
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh-cccceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccC
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN-RLDEIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVT 787 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-R~~~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~ 787 (900)
..+...- .+ ..|++ |+..+|..+||++ +|+..+++.++..++++++.. ....+
T Consensus 224 ~l~~~~~-------------------~g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~--~~~~~ 279 (403)
T COG1221 224 DLEEAVL-------------------AG---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLP--LSVDS 279 (403)
T ss_pred CHHHHHH-------------------hh---cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCCC
Confidence 7643221 11 48888 6677899999988 899999999999888776543 23445
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 788 DAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 788 ~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
++++..|..|.|++| +|+|++.|++.+...-
T Consensus 280 ~~a~~~L~~y~~pGN--irELkN~Ve~~~~~~~ 310 (403)
T COG1221 280 PEALRALLAYDWPGN--IRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHhCCCCCc--HHHHHHHHHHHHHHhc
Confidence 799999999999999 9999999998777653
No 34
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.89 E-value=1.6e-22 Score=218.80 Aligned_cols=238 Identities=26% Similarity=0.365 Sum_probs=177.9
Q ss_pred HHHhcHHHHHHHHHHHHHHH--hcCCCC----CCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRS--RAGLGR----PQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~--~~g~~~----~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
+.++||+.|++.++.++... +.++.. +..| .++||+||||||||++|+.||+.+. .+|+.+|++.|.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l~---~~fi~vD~t~f~e~G 90 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKFTEVG 90 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHhC---ChheeecchhhccCC
Confidence 45899999999999999763 233222 2224 5899999999999999999999994 599999999887532
Q ss_pred ccc----------------------------------------cccCCC-------------------------------
Q 046258 632 SVS----------------------------------------RLIGAP------------------------------- 640 (900)
Q Consensus 632 ~~~----------------------------------------~l~G~~------------------------------- 640 (900)
.+. .|.+..
T Consensus 91 yvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd 170 (443)
T PRK05201 91 YVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDD 170 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCC
Confidence 110 011100
Q ss_pred --------C-CC-ccccc--c----------------------------------------------cchhHHHHh-CCC
Q 046258 641 --------P-GY-VGHEE--G----------------------------------------------GQLTEAVRR-RPY 661 (900)
Q Consensus 641 --------~-g~-~g~~~--~----------------------------------------------~~l~~~~~~-~~~ 661 (900)
. ++ .+... + .....++.. ...
T Consensus 171 ~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~ 250 (443)
T PRK05201 171 KEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQN 250 (443)
T ss_pred cEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0 00 00000 0 001123343 377
Q ss_pred eEEEEccccccC------------HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHH
Q 046258 662 SVVLFDEVEKAH------------ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVAR 729 (900)
Q Consensus 662 ~vlllDEidk~~------------~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~ 729 (900)
++||||||||+. ..||..||.+++...+.-.+ ..++..+++||++.-+....
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~k--------------- 314 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVSK--------------- 314 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCCC---------------
Confidence 999999999974 23899999999965555433 47899999999998764210
Q ss_pred HHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHH----HHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCC-----
Q 046258 730 DQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVA----RLQMKDVAIRLAERGVALAVTDAALDIVLAESYD----- 800 (900)
Q Consensus 730 ~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~----~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~----- 800 (900)
...+-|||.+||+.++.+.||+.+++.+|+ ...++++...|+..|+.+.|+++|++.|++.++.
T Consensus 315 -------p~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 387 (443)
T PRK05201 315 -------PSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKT 387 (443)
T ss_pred -------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccc
Confidence 123679999999999999999999999999 5588999999999999999999999999998876
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 046258 801 PIYGARPIRRWLEKKVVTELSR 822 (900)
Q Consensus 801 ~~~g~R~L~~~i~~~i~~~l~~ 822 (900)
.+.|||.|+.++++.+....-+
T Consensus 388 ~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 388 ENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred cccchhhHHHHHHHHHHHHhcc
Confidence 6899999999999988876654
No 35
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.89 E-value=8.5e-22 Score=228.27 Aligned_cols=286 Identities=21% Similarity=0.322 Sum_probs=193.7
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhc-------CCCCceeEe
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLF-------DDENLLVRI 622 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~-------~~~~~~i~i 622 (900)
.++++...+.++|++.+++.+..++. . ..| .++||+||||||||++|+++++... ..+.+|+.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~-~-------~~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC-G-------PNP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh-C-------CCC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 34566677789999999988886541 1 123 3799999999999999999997642 124689999
Q ss_pred cccc--cccccccccccCCC--CCCcccccc------cchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecC
Q 046258 623 DMSE--YMEQHSVSRLIGAP--PGYVGHEEG------GQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDG 692 (900)
Q Consensus 623 ~~~~--~~~~~~~~~l~G~~--~g~~g~~~~------~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~ 692 (900)
||+. +.+......++|+. +.|.|.... ....+.+.++.+++||||||+.+++..|+.|+++|+++.+.-.
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeec
Confidence 9974 23222223455532 233332111 1123456677889999999999999999999999998765321
Q ss_pred ------CCce-----------eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecC
Q 046258 693 ------QGRT-----------VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFD 755 (900)
Q Consensus 693 ------~g~~-----------~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~ 755 (900)
.+.. --..++++|++|+..+ ..++|++.+|| ..+.|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-------------------------~~L~paLrsR~-~~I~f~ 261 (531)
T TIGR02902 208 SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP-------------------------EEIPPALRSRC-VEIFFR 261 (531)
T ss_pred cccccccCcccccchhhhcccCcccceEEEEEecCCc-------------------------ccCChHHhhhh-heeeCC
Confidence 1000 0123567777766543 35789999999 788999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH------------HH
Q 046258 756 PLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS------------RM 823 (900)
Q Consensus 756 pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~------------~~ 823 (900)
||+.+++..|++..+++ . .+.+++++++.|..++| + .|++.++++.+...... +.
T Consensus 262 pL~~eei~~Il~~~a~k-------~--~i~is~~al~~I~~y~~--n--~Rel~nll~~Aa~~A~~~~~~~It~~dI~~v 328 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEK-------I--GINLEKHALELIVKYAS--N--GREAVNIVQLAAGIALGEGRKRILAEDIEWV 328 (531)
T ss_pred CCCHHHHHHHHHHHHHH-------c--CCCcCHHHHHHHHHhhh--h--HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHH
Confidence 99999999999987763 2 36899999999998877 4 79999999876543321 11
Q ss_pred HHcccCC-------------------------CCCEEEEEec--C--C-CCeEEEEEecCCcccccc----------c--
Q 046258 824 LVREEID-------------------------ENSTVYIDAS--P--K-GDNLVYRVQKNGGFVDAA----------T-- 861 (900)
Q Consensus 824 i~~~~~~-------------------------~~~~~~v~~~--~--~-~~~~~~~~~~~~~~~~~~----------~-- 861 (900)
+..+... .|..+.|+++ + + .|.+.+++-.+....+.. .
T Consensus 329 l~~~~~~~~~~~~~~~~~~vg~v~glav~g~~~g~~v~vE~~~~~~~~~~g~~~i~G~~~~~~~~~~~~~~~~k~~~~es 408 (531)
T TIGR02902 329 AENGNYHPKPEIKLSSEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLPGSINVTGIIEEEEIGGSGKSVRRKSSARGS 408 (531)
T ss_pred hCCcccccchhhhcccCCceEEEEEEEEEcCCceEEEEEEEEEecCCCCCCeEEEEeccCccccccchhhhhHHHHHHHH
Confidence 1111111 1445666665 3 2 347898887765222111 0
Q ss_pred ------------c---ccccccccCCCC-CCCCchhHH
Q 046258 862 ------------G---RKSDVLIQIPNG-PRTDPSQAV 883 (900)
Q Consensus 862 ------------~---~~~~~~~~~p~~-~~~~~~~~~ 883 (900)
+ ...|+|+++|.| |||||||--
T Consensus 409 ~~~v~~~l~~~~g~~~~~~di~vn~p~~~~k~Gpsadl 446 (531)
T TIGR02902 409 VENVLAVLRSVFGINPQNYDIHINFPGGIPVDGPSAGV 446 (531)
T ss_pred HHHHHHHHHHhcCCCCCCeeEEEEcCCCCCCCCccHHH
Confidence 1 345999999999 999999853
No 36
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.89 E-value=1.5e-22 Score=234.91 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=186.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
.+.++|.+.+++.+...+++... .. .++||+|++||||+.+|++++....+...||+.+||+.+.+....+.|
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~---~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~el 275 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LD---APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESEL 275 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CC---CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHh
Confidence 34688999999999998887621 12 359999999999999999999999888899999999999876667789
Q ss_pred cCCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 637 IGAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 637 ~G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
+|+.+|.. |...+ -.+.+..+.+++||||||+.+++.+|..|+++|++|.++...+...-..+++||+||+.+...+
T Consensus 276 FG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 276 FGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred cCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 99766432 32211 1234555678999999999999999999999999998876554433345789999999988776
Q ss_pred hcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Q 046258 716 LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALD 792 (900)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~ 792 (900)
.. .+.|+++|++|+. ..|.++||++ +|+..++..++.+++.+++.. .+.+++++++
T Consensus 354 ~~-------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~ 412 (520)
T PRK10820 354 VQ-------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNT 412 (520)
T ss_pred HH-------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHH
Confidence 65 6789999999986 5788888988 799999999999887654332 3589999999
Q ss_pred HHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 793 IVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 793 ~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
+|..|.||+| +|+|++++++++..
T Consensus 413 ~L~~y~WPGN--vreL~nvl~~a~~~ 436 (520)
T PRK10820 413 VLTRYGWPGN--VRQLKNAIYRALTQ 436 (520)
T ss_pred HHhcCCCCCH--HHHHHHHHHHHHHh
Confidence 9999999999 99999999887764
No 37
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-20 Score=219.77 Aligned_cols=428 Identities=24% Similarity=0.308 Sum_probs=252.7
Q ss_pred HHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCC
Q 046258 193 RILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEG 272 (900)
Q Consensus 193 ~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~ 272 (900)
+.+.......++++||||+|||+++++++.. .. .+..++...... ++.|..+.++...+..+....
T Consensus 11 ~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~----~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~- 76 (494)
T COG0464 11 KKLGIEPPKGVLLHGPPGTGKTLLARALANE----GA-------EFLSINGPEILS--KYVGESELRLRELFEEAEKLA- 76 (494)
T ss_pred HHhCCCCCCCceeeCCCCCchhHHHHHHHhc----cC-------cccccCcchhhh--hhhhHHHHHHHHHHHHHHHhC-
Confidence 3345567788999999999999999999987 11 134445555554 568888999999999888766
Q ss_pred CeEEEEcchhhhhhCCCCCC---hhhHHHhHhhhhh---cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCC
Q 046258 273 KVILFIDEIHLVLGAGRTEG---SMDAANLFKPMLA---RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPS 343 (900)
Q Consensus 273 ~~iL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~---~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~ 343 (900)
+.++|+||++.+.+...... .......+...+. ++.+.+++.+++... .++++++ ||.. +.+..|.
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG-----LDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred CCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc-----cChhHhCccccceeeecCCCC
Confidence 57899999999998766511 1222334433332 344667776666553 6788877 7765 6777887
Q ss_pred hHHHHHHHHHHHHHHhcccCcccC-hhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHH
Q 046258 344 VPDTVSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQ 422 (900)
Q Consensus 344 ~~e~~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~ 422 (900)
...+.+++...... +.+. +.....++..+.+|... +...++..+........
T Consensus 152 ~~~~~ei~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~r~---------------- 204 (494)
T COG0464 152 EAGRLEILQIHTRL------MFLGPPGTGKTLAARTVGKSGA-----DLGALAKEAALRELRRA---------------- 204 (494)
T ss_pred HHHHHHHHHHHHhc------CCCcccccHHHHHHhcCCccHH-----HHHHHHHHHHHHHHHhh----------------
Confidence 77666666544332 1111 33334444444333222 22222221111100000
Q ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 046258 423 LEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADL 502 (900)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 502 (900)
+ .... ..
T Consensus 205 ---------------------------------~----------~~~~----------~~-------------------- 211 (494)
T COG0464 205 ---------------------------------I----------DLVG----------EY-------------------- 211 (494)
T ss_pred ---------------------------------h----------ccCc----------cc--------------------
Confidence 0 0000 00
Q ss_pred hhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcC--
Q 046258 503 RYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAG-- 580 (900)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g-- 580 (900)
...........++..... .+..+....+.+.++ .|.+.+...+.+.+.....-
T Consensus 212 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~di-----------------------ggl~~~k~~l~e~v~~~~~~~e 266 (494)
T COG0464 212 IGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDI-----------------------GGLEEAKEELKEAIETPLKRPE 266 (494)
T ss_pred ccccHHHHHHHHHhcCcc--cccccCCCCcceehh-----------------------hcHHHHHHHHHHHHHhHhhChH
Confidence 000000011111111100 000111122223322 22222222222222111000
Q ss_pred -CC-CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHH
Q 046258 581 -LG-RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAV 656 (900)
Q Consensus 581 -~~-~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~ 656 (900)
.. ...+|...+||+||||||||+||+++|..+ +.+|+.++++++... |+|..+. +.++...
T Consensus 267 ~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk------------~vGesek~ir~~F~~A 331 (494)
T COG0464 267 LFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK------------WVGESEKNIRELFEKA 331 (494)
T ss_pred HHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc------------ccchHHHHHHHHHHHH
Confidence 00 012344479999999999999999999977 449999999876542 6665554 3344555
Q ss_pred HhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccch
Q 046258 657 RRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM 725 (900)
Q Consensus 657 ~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~ 725 (900)
++...|||||||||++- ..+.+.|+..++.-. ...++++|.+||.+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~p-------------- 388 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNRP-------------- 388 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCCc--------------
Confidence 55667999999999862 257888888887322 34678899999984
Q ss_pred HHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCC
Q 046258 726 QVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIY 803 (900)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 803 (900)
..++|+++. |||.++.|++++.++..+|++.++..... .-..+-.++.+++ .+..|
T Consensus 389 ------------~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~--------~~~~~~~~~~l~~--~t~~~ 446 (494)
T COG0464 389 ------------DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP--------PLAEDVDLEELAE--ITEGY 446 (494)
T ss_pred ------------cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC--------cchhhhhHHHHHH--HhcCC
Confidence 557889998 99999999999999999999999983221 1112233444443 22335
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 046258 804 GARPIRRWLEKKVVTELSRML 824 (900)
Q Consensus 804 g~R~L~~~i~~~i~~~l~~~i 824 (900)
...++..+++.+....+.+.+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 447 SGADIAALVREAALEALREAR 467 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 677999999999888888765
No 38
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.87 E-value=1.5e-21 Score=211.17 Aligned_cols=141 Identities=18% Similarity=0.296 Sum_probs=119.1
Q ss_pred CCCeEEEEccccccCH------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchH
Q 046258 659 RPYSVVLFDEVEKAHI------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQ 726 (900)
Q Consensus 659 ~~~~vlllDEidk~~~------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~ 726 (900)
...++||+|||||+.. .||+.||.+++...+.-.+ ..++..+.+||++.-+....
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~k------------ 312 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLAK------------ 312 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCCC------------
Confidence 4678999999999752 2899999999965555444 47899999999998764210
Q ss_pred HHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHH----HHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCC--
Q 046258 727 VARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVA----RLQMKDVAIRLAERGVALAVTDAALDIVLAESYD-- 800 (900)
Q Consensus 727 ~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~----~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-- 800 (900)
-..+-|||.+||+.++.+.||+.+++.+|+ ...++++...|+..|+.+.|+++|+++|++.++.
T Consensus 313 ----------p~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N 382 (441)
T TIGR00390 313 ----------PSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVN 382 (441)
T ss_pred ----------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhc
Confidence 123689999999999999999999999999 5688889999999999999999999999998776
Q ss_pred ---CCCCchHHHHHHHHHHHHHHHH
Q 046258 801 ---PIYGARPIRRWLEKKVVTELSR 822 (900)
Q Consensus 801 ---~~~g~R~L~~~i~~~i~~~l~~ 822 (900)
.+.|||.|+.++++.+....-+
T Consensus 383 ~~~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 383 EKTENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred ccccccchhhHHHHHHHHHHHHHhc
Confidence 7999999999999988877665
No 39
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.87 E-value=1.4e-21 Score=227.03 Aligned_cols=262 Identities=21% Similarity=0.226 Sum_probs=201.2
Q ss_pred ccccCCCChhhHHHHHHHHhcCCcc-----c-cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCc
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPVT-----R-LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGV 599 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~~-----~-~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~Gt 599 (900)
+++.+++..+.+...+...+..... . ........++|.+.++..+...+.... ....++++.|++||
T Consensus 100 ~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~lig~s~~~~~l~~~~~~~~-------~~~~~vli~Ge~Gt 172 (469)
T PRK10923 100 DYLPKPFDIDEAVALVERAISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLS-------RSSISVLINGESGT 172 (469)
T ss_pred eEEecCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccceecCHHHHHHHHHHHHHh-------ccCCeEEEEeCCCC
Confidence 5667777777776666554321100 0 000012358888889988888887652 22336999999999
Q ss_pred hHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCC-cccccccchhHHHHhCCCeEEEEccccccCHHHHH
Q 046258 600 GKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGY-VGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFN 678 (900)
Q Consensus 600 GKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~-~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~ 678 (900)
|||++|++||....+...+|+.+||+.+.+....+.++|+..|. .|... .-.+.+..+.+++||||||+.+++.+|.
T Consensus 173 GK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~ 250 (469)
T PRK10923 173 GKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQT 250 (469)
T ss_pred cHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHH
Confidence 99999999999998888999999999997776778899987663 33221 1122344556789999999999999999
Q ss_pred HHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCC
Q 046258 679 TLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPL 757 (900)
Q Consensus 679 ~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl 757 (900)
.|+++|+++.++...+......+++||+||+.+...+.. .+.|.++|++||. ..|..+||
T Consensus 251 ~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-------------------~~~~~~~L~~~l~~~~i~~PpL 311 (469)
T PRK10923 251 RLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ-------------------EGKFREDLFHRLNVIRVHLPPL 311 (469)
T ss_pred HHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH-------------------cCCchHHHHHHhcceeecCCCc
Confidence 999999999988766554445689999999998766554 5689999999995 57777888
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 758 SH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 758 ~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
++ +|+..++.+++.++..+++.. ...+++++++.|..|.||+| +|+|+++|++++...
T Consensus 312 reR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpgN--v~eL~~~i~~~~~~~ 371 (469)
T PRK10923 312 RERREDIPRLARHFLQVAARELGVE--AKLLHPETEAALTRLAWPGN--VRQLENTCRWLTVMA 371 (469)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHhC
Confidence 88 999999999999876654332 34799999999999999999 999999999887653
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=201.73 Aligned_cols=198 Identities=25% Similarity=0.352 Sum_probs=159.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++-|-+.+++.+.+.+.- ..+..||||||||||||.+|+++|+.. ++.|+.+.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEec
Confidence 4456788899999999987752 467789999999999999999999988 89999999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCC---CCChhhHHHhHhhhhh-------cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGR---TEGSMDAANLFKPMLA-------RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~---~~~~~~~~~~L~~~l~-------~g~irvI 312 (900)
.+.+.. +|.|+-...++.+|..++... |+|+||||||.+...+. ++|+.++...|.++|. +|+++||
T Consensus 218 gSElVq--KYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 218 GSELVQ--KYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred cHHHHH--HHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 999987 789999999999999888765 99999999999987653 3677888888888774 6899999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||+.+. +||+|.| ||+. |+++.|+.+.|..|++.+..+.....+++ ++.++..+..+-. +
T Consensus 295 ~ATNR~D~-----LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~sG-----A 359 (406)
T COG1222 295 MATNRPDI-----LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEGFSG-----A 359 (406)
T ss_pred EecCCccc-----cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCCch-----H
Confidence 99999986 8999999 9986 99999999999999998887743333332 3445665544432 2
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++-+|+..
T Consensus 360 dlkaictEAGm~ 371 (406)
T COG1222 360 DLKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHHhHH
Confidence 555556666543
No 41
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.87 E-value=2.8e-21 Score=233.06 Aligned_cols=229 Identities=20% Similarity=0.283 Sum_probs=185.8
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.++|.+.+++.+.+.+.... +...++||+|++|||||++|++|+....+.+.+|+.+||..+......+.++|
T Consensus 377 ~liG~S~~~~~~~~~~~~~a-------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA-------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcC
Confidence 47888999999999988772 22236999999999999999999999988889999999999876666678899
Q ss_pred CCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcc
Q 046258 639 APPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSG 718 (900)
Q Consensus 639 ~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~ 718 (900)
+..|...... ..-.+.+..+.+++||||||+.+++++|..|+.+|+++.+....+...-..++++|+||+.+...+..
T Consensus 450 ~~~~~~~g~~-~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~- 527 (686)
T PRK15429 450 HERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA- 527 (686)
T ss_pred cccccccccc-cchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHH-
Confidence 7654322111 11223455667899999999999999999999999999887655544445689999999998766554
Q ss_pred cCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHH
Q 046258 719 MMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVL 795 (900)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~ 795 (900)
.+.|.++|++|+.. .|.++||++ +|+..++++++.++..+++.. ...+++++++.|.
T Consensus 528 ------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~--~~~~s~~al~~L~ 587 (686)
T PRK15429 528 ------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN--IDSIPAETLRTLS 587 (686)
T ss_pred ------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHH
Confidence 67899999999965 588888988 999999999999887654432 2369999999999
Q ss_pred HcCCCCCCCchHHHHHHHHHHHH
Q 046258 796 AESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 796 ~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
.+.||+| +|+|+++|++++..
T Consensus 588 ~y~WPGN--vrEL~~~i~~a~~~ 608 (686)
T PRK15429 588 NMEWPGN--VRELENVIERAVLL 608 (686)
T ss_pred hCCCCCc--HHHHHHHHHHHHHh
Confidence 9999999 99999999988764
No 42
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.87 E-value=5.1e-21 Score=221.04 Aligned_cols=262 Identities=19% Similarity=0.259 Sum_probs=202.4
Q ss_pred ccccCCCChhhHHHHHHHHhcCCc-----cccChh----HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEecc
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPV-----TRLGQN----EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGP 596 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~-----~~~~~~----~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp 596 (900)
+|+.+|++.+++...+........ ..+... ....++|.+..++.+...+... .....+++++|+
T Consensus 98 dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~-------a~~~~~vli~Ge 170 (445)
T TIGR02915 98 DFYQKPIDPDVLKLIVDRAFHLYTLETENRRLQSALGGTALRGLITSSPGMQKICRTIEKI-------APSDITVLLLGE 170 (445)
T ss_pred EEEeCCCCHHHHHHHHhhhhhhhhhHHHHHHhhhhhhcccccceeecCHHHHHHHHHHHHH-------hCCCCCEEEECC
Confidence 678888988888887776543221 011110 1124788888888888888765 122235999999
Q ss_pred CCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHH
Q 046258 597 TGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISV 676 (900)
Q Consensus 597 ~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~ 676 (900)
+||||+.+|++++....+...+|+.+||+.+.+....+.++|+..|...... ....+.+..+.+++||||||+.+++.+
T Consensus 171 ~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~l~~i~~l~~~~ 249 (445)
T TIGR02915 171 SGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAV-KQTLGKIEYAHGGTLFLDEIGDLPLNL 249 (445)
T ss_pred CCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCc-cCCCCceeECCCCEEEEechhhCCHHH
Confidence 9999999999999999888889999999999877667889997665432211 112233455678999999999999999
Q ss_pred HHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecC
Q 046258 677 FNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFD 755 (900)
Q Consensus 677 ~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~ 755 (900)
|..|+++|+++.++...+......++++|+||+.+...+.. .+.|+++|++|+. ..|.++
T Consensus 250 q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-------------------~~~~~~~L~~~l~~~~i~lP 310 (445)
T TIGR02915 250 QAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA-------------------EGTFREDLFYRIAEISITIP 310 (445)
T ss_pred HHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH-------------------cCCccHHHHHHhccceecCC
Confidence 99999999999887655444444588999999998766554 5789999999996 467888
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 756 PLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 756 pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
||.+ +|+..++.+++.++..+++.. ...+++++++.|..|.||+| +|+|+++|++++..
T Consensus 311 pLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpgN--vreL~~~i~~a~~~ 371 (445)
T TIGR02915 311 PLRSRDGDAVLLANAFLERFARELKRK--TKGFTDDALRALEAHAWPGN--VRELENKVKRAVIM 371 (445)
T ss_pred CchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHh
Confidence 8888 899999999999887665433 36899999999999999999 99999999987753
No 43
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.86 E-value=2e-21 Score=233.18 Aligned_cols=226 Identities=17% Similarity=0.240 Sum_probs=183.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
...++|.+.+++.+.+.+++.. +...++||+|++||||+.+|++||....+...||+.+||+.+......+++
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a-------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA-------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHh-------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 4568899999999999988872 223359999999999999999999999888889999999999876667889
Q ss_pred cCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
+|...+. ...+ ..+.+..+.+++||||||+.+++++|..|+++|+++.++...+...-..++++|+|||.+...+.
T Consensus 397 fg~~~~~---~~~~-~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRTD---SENG-RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCcC---ccCC-CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 9865321 1111 12234456789999999999999999999999999988865544333346889999999876655
Q ss_pred cccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Q 046258 717 SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDI 793 (900)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (900)
. .+.|+++|++|+.. .|.++||++ +|+..++..++.++..+++ ..+.+++++++.
T Consensus 473 ~-------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~---~~~~~s~~a~~~ 530 (638)
T PRK11388 473 E-------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFS---TRLKIDDDALAR 530 (638)
T ss_pred h-------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhC---CCCCcCHHHHHH
Confidence 4 57899999999964 677888988 8999999999998765443 346899999999
Q ss_pred HHHcCCCCCCCchHHHHHHHHHHH
Q 046258 794 VLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 794 l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
|..|.||+| +|+|++++++++.
T Consensus 531 L~~y~WPGN--vreL~~~l~~~~~ 552 (638)
T PRK11388 531 LVSYRWPGN--DFELRSVIENLAL 552 (638)
T ss_pred HHcCCCCCh--HHHHHHHHHHHHH
Confidence 999999999 9999999988665
No 44
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-21 Score=200.37 Aligned_cols=231 Identities=25% Similarity=0.394 Sum_probs=175.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-------CC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR-------PY 661 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~-------~~ 661 (900)
.++|+.||+|+|||.||+.||+.+ +.||...||..+++ .||+|.+....+...+..+ ..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 379999999999999999999999 55999999998876 6899998877777766544 44
Q ss_pred eEEEEccccccC--------------HHHHHHHHHHhhCCeeec---------CC--CceeecCCeEEEEccCC-CcHHH
Q 046258 662 SVVLFDEVEKAH--------------ISVFNTLLQVLDDGRLTD---------GQ--GRTVDFRNTVIIMTSNL-GAEHL 715 (900)
Q Consensus 662 ~vlllDEidk~~--------------~~~~~~Ll~~ld~g~~~d---------~~--g~~~~~~~~~iI~tsn~-~~~~~ 715 (900)
+++||||+||+. ..||..||.+++ |++.. .. ...+|.+|.+||+..-+ +.+.+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 789999999974 338999999998 44432 11 23678888888887654 44444
Q ss_pred hcccC-----C--cc------------c----hHHHHHHHHHH------HHhcccHHHHhcccceeecCCCCHHHHHHHH
Q 046258 716 LSGMM-----G--KV------------T----MQVARDQVLQE------VRKHFRPELLNRLDEIVVFDPLSHEQLRKVA 766 (900)
Q Consensus 716 ~~~~~-----~--~~------------~----~~~~~~~~~~~------~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~ 766 (900)
...+. + .. + ....+..+++. +...+-|||.+||..+++|.+|+++++.+|+
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 42110 0 00 0 11122223322 3456889999999999999999999999999
Q ss_pred HH----HHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 767 RL----QMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 767 ~~----~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
.. .+.++.+.|...++.+.|+++|++.+++.+...+.|||.|+.+++++++.+..+ ++..+...|.++
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe------vPGSdI~~V~Vd 523 (564)
T KOG0745|consen 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE------VPGSDIKAVLVD 523 (564)
T ss_pred hcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc------CCCCceEEEEec
Confidence 65 677778888888999999999999999999999999999999999998887654 333343455555
No 45
>PRK15115 response regulator GlrR; Provisional
Probab=99.86 E-value=8.5e-21 Score=219.10 Aligned_cols=262 Identities=18% Similarity=0.193 Sum_probs=199.1
Q ss_pred ccccCCCChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHH
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELA 605 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA 605 (900)
+++.+++..+.+...+..........-.......++|.+..+..+.+.+.... ....++++.|++|||||++|
T Consensus 102 ~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~~~~lig~s~~~~~~~~~~~~~a-------~~~~~vli~Ge~GtGk~~lA 174 (444)
T PRK15115 102 SFLTKPVDRDALYKAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARMVA-------QSDVSVLINGQSGTGKEILA 174 (444)
T ss_pred hhccCCCCHHHHHHHHHHHHHhhhcccccchhhcccccCHHHHHHHHHHHhhc-------cCCCeEEEEcCCcchHHHHH
Confidence 66778888888888777655322111111123457888888888777766551 11225999999999999999
Q ss_pred HHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhh
Q 046258 606 KALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLD 685 (900)
Q Consensus 606 ~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld 685 (900)
+.+++...+...+|+.+||+.+.+....+.++|+..|.+..... ...+.+..+.+++||||||+.+++.+|..|+++|+
T Consensus 175 ~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~-~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~ 253 (444)
T PRK15115 175 QAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVS-NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQ 253 (444)
T ss_pred HHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCcc-CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHh
Confidence 99999998878899999999997776677889987654322111 11223445667899999999999999999999999
Q ss_pred CCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHH
Q 046258 686 DGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQL 762 (900)
Q Consensus 686 ~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~ 762 (900)
++.+....+......++++|+||+.+...... .+.|+++|++|+.. .|.++||++ +|+
T Consensus 254 ~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~-------------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi 314 (444)
T PRK15115 254 ERKVRPLGSNRDIDIDVRIISATHRDLPKAMA-------------------RGEFREDLYYRLNVVSLKIPALAERTEDI 314 (444)
T ss_pred hCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH-------------------cCCccHHHHHhhceeeecCCChHhccccH
Confidence 99886544443334589999999987665554 56899999999964 677788888 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 763 RKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 763 ~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
..++.+++.++...++.. ...+++++++.|..|.||+| +|+|+++|++++..
T Consensus 315 ~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~WpgN--vreL~~~i~~~~~~ 366 (444)
T PRK15115 315 PLLANHLLRQAAERHKPF--VRAFSTDAMKRLMTASWPGN--VRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHh
Confidence 999999999876544322 34699999999999999999 99999999987653
No 46
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=3.2e-20 Score=183.15 Aligned_cols=183 Identities=25% Similarity=0.373 Sum_probs=146.1
Q ss_pred CCCCCCCCchHHHHHHHHHH---c------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 176 GKLDPVIGRDEEIRRVVRIL---S------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l---~------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
-+++++||++.+.+.+.-++ . ...+.|||++||||||||++|+++|... +++++.+....+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~vkat~l 187 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLVKATEL 187 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEechHHH
Confidence 56789999998876655433 2 2568899999999999999999999876 555999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CC-hhhHHHhHhhhhh----cCcEEEEEecCHH
Q 046258 247 VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EG-SMDAANLFKPMLA----RGQLRCIGATTLE 318 (900)
Q Consensus 247 ~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~-~~~~~~~L~~~l~----~g~irvI~att~~ 318 (900)
+. .+.|+-..+++.++..+..+. |||+||||+|.+.-++.. .| -.+..|.|+.-|. +..+..|++||+.
T Consensus 188 iG--ehVGdgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p 264 (368)
T COG1223 188 IG--EHVGDGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP 264 (368)
T ss_pred HH--HHhhhHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh
Confidence 87 568999999999999998877 999999999998766533 33 3567788887764 4569999999998
Q ss_pred HHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 319 EYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
+. +|+++++||+. |++..|+.+||..|++...+.+. +.+... +..++..+.++
T Consensus 265 ~~-----LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 265 EL-----LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred hh-----cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccC-HHHHHHHhCCC
Confidence 86 89999999986 99999999999999998887743 333322 45555555443
No 47
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.85 E-value=4.7e-21 Score=187.99 Aligned_cols=164 Identities=23% Similarity=0.315 Sum_probs=129.2
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCC
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGA 639 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~ 639 (900)
|+|.+.+++.+.+.+++.. ....++||+|++||||+.+|++||+...+.+.||+.+||+.+......+.|+|+
T Consensus 1 liG~s~~m~~~~~~~~~~a-------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHh-------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 4788899999999998882 222479999999999999999999999988999999999999888778899998
Q ss_pred CCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhccc
Q 046258 640 PPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM 719 (900)
Q Consensus 640 ~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 719 (900)
..|...... ..-.+.+..+.+++||||||+.+++.+|..|+++|+++.++...+...-..+++||+||+.+.+.+..
T Consensus 74 ~~~~~~~~~-~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~-- 150 (168)
T PF00158_consen 74 EKGAFTGAR-SDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE-- 150 (168)
T ss_dssp CSSSSTTTS-SEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH--
T ss_pred ccccccccc-cccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH--
Confidence 765432211 22347888899999999999999999999999999999998766554445689999999998877766
Q ss_pred CCccchHHHHHHHHHHHHhcccHHHHhcccc
Q 046258 720 MGKVTMQVARDQVLQEVRKHFRPELLNRLDE 750 (900)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~ 750 (900)
.+.|+++|++|+..
T Consensus 151 -----------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 -----------------QGRFREDLYYRLNV 164 (168)
T ss_dssp -----------------TTSS-HHHHHHHTT
T ss_pred -----------------cCCChHHHHHHhce
Confidence 67899999999943
No 48
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.85 E-value=3.9e-20 Score=214.63 Aligned_cols=262 Identities=18% Similarity=0.251 Sum_probs=198.3
Q ss_pred ccccCCCChhhHHHHHHHHhcCCcc-----ccChh-----HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEec
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPVT-----RLGQN-----EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLG 595 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~~-----~~~~~-----~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~G 595 (900)
+++.+++..+.+...+......... .+... ....++|.+.++..+.+.+... .....++++.|
T Consensus 101 d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~~~~-------a~~~~~vli~G 173 (457)
T PRK11361 101 DYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKI-------ALSQASVLISG 173 (457)
T ss_pred EEEecccCHHHHHHHHhhhccccccchhhhhhhhhhhccccccceecccHHHhHHHHHHHHH-------cCCCcEEEEEc
Confidence 5666777777777666654432210 00110 1124778888888888888776 23334699999
Q ss_pred cCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHH
Q 046258 596 PTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHIS 675 (900)
Q Consensus 596 p~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~ 675 (900)
++||||+++|++++....+...+|+.+||..+.+....+.++|+..|...... ..-.+.+..+.+++||||||+.+++.
T Consensus 174 e~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~ld~i~~l~~~ 252 (457)
T PRK11361 174 ESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLV 252 (457)
T ss_pred CCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCC-CCCCCceEECCCCEEEEechhhCCHH
Confidence 99999999999999998888889999999999877777889998655332111 11123344567899999999999999
Q ss_pred HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeec
Q 046258 676 VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVF 754 (900)
Q Consensus 676 ~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f 754 (900)
+|..|+++|+++.+....+......++++|+|||.+...+.. .+.|.++|++|+.. .|..
T Consensus 253 ~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~-------------------~g~~~~~l~~~l~~~~i~~ 313 (457)
T PRK11361 253 LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK-------------------EGTFREDLFYRLNVIHLIL 313 (457)
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-------------------cCCchHHHHHHhccceecC
Confidence 999999999998877544433344578999999998766655 57899999999954 6777
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 755 DPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 755 ~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
+||.+ +|+..++..++.++..+++.. .+.+++++++.|..|.||+| +|+|+++|++++..
T Consensus 314 ppLreR~~di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpgN--v~eL~~~~~~~~~~ 375 (457)
T PRK11361 314 PPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPMAMSLLTAWSWPGN--IRELSNVIERAVVM 375 (457)
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHcCCCCCc--HHHHHHHHHHHHHh
Confidence 88886 899999999999877654322 36899999999999999999 99999999987654
No 49
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.84 E-value=3.1e-20 Score=215.76 Aligned_cols=262 Identities=21% Similarity=0.271 Sum_probs=200.2
Q ss_pred ccccCCCChhhHHHHHHHHhcCCc--cccCh-----hHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCC
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPV--TRLGQ-----NEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTG 598 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~-----~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~G 598 (900)
+++.++++.+++...+........ ..... .....++|.+.++..+...+.... .. ..++++.|++|
T Consensus 95 ~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~lig~s~~~~~v~~~i~~~a------~~-~~~vli~Ge~G 167 (463)
T TIGR01818 95 EYLPKPFDLDEAVTLVERALAHAQEQVALPADAGEAEDSAELIGEAPAMQEVFRAIGRLS------RS-DITVLINGESG 167 (463)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCHHHHHHHHHHHHHh------Cc-CCeEEEECCCC
Confidence 566677777777776665432110 00000 011247888888888888887652 12 23699999999
Q ss_pred chHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCC-cccccccchhHHHHhCCCeEEEEccccccCHHHH
Q 046258 599 VGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGY-VGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVF 677 (900)
Q Consensus 599 tGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~-~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~ 677 (900)
|||+++|++++....+...+|+.+||+.+.+....+.++|+..|. .|... ...+.+..+.+++||||||+.+++.+|
T Consensus 168 tGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q 245 (463)
T TIGR01818 168 TGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQ 245 (463)
T ss_pred CCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHH
Confidence 999999999999998888999999999997766677889976543 22211 112334456688999999999999999
Q ss_pred HHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCC
Q 046258 678 NTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDP 756 (900)
Q Consensus 678 ~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~p 756 (900)
..|+++|++|.++...+......++++|+||+.+.+.+.. .+.|.++|++|+.. .|..+|
T Consensus 246 ~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-------------------~~~f~~~L~~rl~~~~i~lPp 306 (463)
T TIGR01818 246 TRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR-------------------QGKFREDLFHRLNVIRIHLPP 306 (463)
T ss_pred HHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH-------------------cCCcHHHHHHHhCcceecCCC
Confidence 9999999999988766555555688999999998776655 57899999999974 788888
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 757 LS--HEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 757 l~--~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
|+ .+|+..++.+++.++...++.. ...+++++++.|..++||+| +|+|++++++++...
T Consensus 307 Lr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpgN--vreL~~~~~~~~~~~ 367 (463)
T TIGR01818 307 LRERREDIPRLARHFLALAARELDVE--PKLLDPEALERLKQLRWPGN--VRQLENLCRWLTVMA 367 (463)
T ss_pred cccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHhC
Confidence 98 4999999999999887654332 24799999999999999999 999999999877643
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.7e-20 Score=197.74 Aligned_cols=188 Identities=27% Similarity=0.388 Sum_probs=145.8
Q ss_pred CCCCCCCCchHHH---HHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 176 GKLDPVIGRDEEI---RRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i---~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
.++++++|++.-+ .-+...+....-.+++|+|||||||||+|+.||+.. ++.|..++ +..+|.+
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s--Av~~gvk- 87 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS--AVTSGVK- 87 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec--cccccHH-
Confidence 5677888887654 444455667788899999999999999999999988 77799884 4455433
Q ss_pred cchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 253 RGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
.++.+++.+++. +..+||||||||++..+.|. .|++.+++|.+.+||+||.+++ ++.+++
T Consensus 88 ------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD--------~lLp~vE~G~iilIGATTENPs---F~ln~A 150 (436)
T COG2256 88 ------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD--------ALLPHVENGTIILIGATTENPS---FELNPA 150 (436)
T ss_pred ------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh--------hhhhhhcCCeEEEEeccCCCCC---eeecHH
Confidence 477777776543 34799999999999999888 9999999999999999999887 678999
Q ss_pred HHcccceeeecCCChHHHHHHHHH-HHHHHhccc--CcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRG-LKEKYEGHH--GVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~-l~~~~~~~~--~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
+++|..++.+...+.++...++.. +...-.... .+.++++++..++..+.+... .+..+++.+.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R------~aLN~LE~~~ 217 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR------RALNLLELAA 217 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH------HHHHHHHHHH
Confidence 999999888888888888888866 333322222 244889999999999866543 4555555444
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=1.8e-19 Score=193.07 Aligned_cols=211 Identities=25% Similarity=0.345 Sum_probs=152.1
Q ss_pred HHhcHHHHHHHHHHHH-------HHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC----CCceeEeccccc
Q 046258 559 RLIGLAEAVNAVAESV-------LRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD----ENLLVRIDMSEY 627 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i-------~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~----~~~~i~i~~~~~ 627 (900)
.++|++.+.+.|.+.+ .+...|+.. ..|..+++|+||||||||++|+++|+.+... ..+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 4566664444433321 122345543 2354589999999999999999999888542 346888887543
Q ss_pred ccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhCCeeecCCCceee
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA---------HISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~---------~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
. .. |+|... ..+.+.+.++.++|||||||+.+ +.++++.|++.|++++
T Consensus 102 ~-----~~-------~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~---------- 158 (284)
T TIGR02880 102 V-----GQ-------YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR---------- 158 (284)
T ss_pred h-----Hh-------hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC----------
Confidence 2 12 344332 23445666677899999999977 3568899999998632
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
.++++|++++...... ...++|+|.+||+..|.|+||+.+|+..|+.+++.+..
T Consensus 159 -~~~~vI~a~~~~~~~~---------------------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~---- 212 (284)
T TIGR02880 159 -DDLVVILAGYKDRMDS---------------------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ---- 212 (284)
T ss_pred -CCEEEEEeCCcHHHHH---------------------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc----
Confidence 5788888887531110 22458999999999999999999999999999998532
Q ss_pred hcCCccccCHHHHHHHHHc-------CCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 779 ERGVALAVTDAALDIVLAE-------SYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~-------~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
..++++++..+..+ .|++| +|+|++++++++...-.+....
T Consensus 213 -----~~l~~~a~~~L~~~l~~~~~~~~~GN--~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 213 -----YRFSAEAEEAFADYIALRRTQPHFAN--ARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred -----cccCHHHHHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888888777 89888 9999999999888877765544
No 52
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.83 E-value=1.2e-18 Score=205.15 Aligned_cols=216 Identities=21% Similarity=0.290 Sum_probs=142.3
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC-------CCCceeEecc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD-------DENLLVRIDM 624 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~ 624 (900)
+++.....++|++.+++.+...+.. ..| .+++|+||||||||++|+.++..... .+.+|+.+||
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~--------~~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS--------PFP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc--------CCC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 3455566789999999987666521 122 26999999999999999999987732 2468999999
Q ss_pred cccccc-cc-cccccCCCCC--Ccccc-------cccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCC
Q 046258 625 SEYMEQ-HS-VSRLIGAPPG--YVGHE-------EGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ 693 (900)
Q Consensus 625 ~~~~~~-~~-~~~l~G~~~g--~~g~~-------~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~ 693 (900)
..+... .. ...++|.... +.+.. ......+.+....+++|||||++.+++..|+.|+.+|+++++.-..
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 876311 00 1123432110 00000 0001112233456789999999999999999999999988743111
Q ss_pred C------c-----------eeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCC
Q 046258 694 G------R-----------TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDP 756 (900)
Q Consensus 694 g------~-----------~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~p 756 (900)
+ . .....++++|++|+.. ...++++|.+|| ..+.|.|
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~-------------------------~~~l~~aLrSR~-~~i~~~p 352 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD-------------------------PEEINPALRSRC-AEVFFEP 352 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEecccc-------------------------ccccCHHHHhce-eEEEeCC
Confidence 0 0 0012245666655543 234688999999 5778999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 757 LSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 757 l~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
|+.+++..|++..+.+ .+ +.+++++++.|.++.|++ |...+.+...
T Consensus 353 ls~edi~~Il~~~a~~-------~~--v~ls~eal~~L~~ys~~g----Rraln~L~~~ 398 (615)
T TIGR02903 353 LTPEDIALIVLNAAEK-------IN--VHLAAGVEELIARYTIEG----RKAVNILADV 398 (615)
T ss_pred CCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHCCCcH----HHHHHHHHHH
Confidence 9999999999987762 22 468999999999998853 4444555444
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=1.5e-19 Score=193.36 Aligned_cols=216 Identities=24% Similarity=0.402 Sum_probs=147.9
Q ss_pred HHHHhcHHHHHHHHHHHHH-------HHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC----CCCceeEeccc
Q 046258 557 KERLIGLAEAVNAVAESVL-------RSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD----DENLLVRIDMS 625 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~-------~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~~ 625 (900)
...++|++...++|.+.+. +...|+..+. +..+++|+||||||||++|+++|+.++. ...+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~-~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSN-PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3456666644443332211 1234655444 3347999999999999999999998754 23357777765
Q ss_pred ccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhCCeeecCCCce
Q 046258 626 EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA---------HISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 626 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~---------~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
++. | .|+|... ....+.+..+.++||||||++.+ ..++++.|++.|++++
T Consensus 101 ~l~---------~---~~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------- 159 (287)
T CHL00181 101 DLV---------G---QYIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------- 159 (287)
T ss_pred HHH---------H---HHhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC--------
Confidence 432 2 1444332 22345666677899999999986 5678999999998632
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
.+++||++++... +. . ...++|+|.+||+.+|.|+||+.+++.+|+..++.+..
T Consensus 160 ---~~~~vI~ag~~~~--~~------------------~-~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-- 213 (287)
T CHL00181 160 ---DDLVVIFAGYKDR--MD------------------K-FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-- 213 (287)
T ss_pred ---CCEEEEEeCCcHH--HH------------------H-HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc--
Confidence 5678888876521 10 0 11347999999999999999999999999999998432
Q ss_pred HHhcCCccccCHHHHHHH----HHcCCCCCCC-chHHHHHHHHHHHHHHHHHHHcc
Q 046258 777 LAERGVALAVTDAALDIV----LAESYDPIYG-ARPIRRWLEKKVVTELSRMLVRE 827 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l----~~~~~~~~~g-~R~L~~~i~~~i~~~l~~~i~~~ 827 (900)
..+++++...+ .+..+.+.+| +|.+++++++++.....+.+..+
T Consensus 214 -------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~ 262 (287)
T CHL00181 214 -------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESG 262 (287)
T ss_pred -------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566655444 4444445555 99999999999888887776654
No 54
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-20 Score=208.30 Aligned_cols=242 Identities=20% Similarity=0.345 Sum_probs=180.1
Q ss_pred HHcCCCcccHHHHHHHHhhc-------cchhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCCcchhhHhhhhhcHHH
Q 046258 101 KAHGDTHLAVDQLILGLLED-------SQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVE 173 (900)
Q Consensus 101 ~~~g~~~i~~e~lllgll~~-------~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 173 (900)
.+||+...+++++..|+++- +.+...++++ +....+..+... . ...
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ra-l~~~~~~~e~~~--~------------------------~~~ 135 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERA-LELRELQRENRR--S------------------------LKR 135 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHH-HHHhhhhhhhhh--h------------------------hhc
Confidence 57899999999999999661 2333334433 222222221111 0 000
Q ss_pred HcCCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-----
Q 046258 174 QAGKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL----- 246 (900)
Q Consensus 174 ~a~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l----- 246 (900)
......++||+++.|+++.+.+.+ .+..+|||+|++||||..+|++||+.+.+.+.| ||.+||+++
T Consensus 136 ~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P-------FVavNcaAip~~l~ 208 (464)
T COG2204 136 AKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGP-------FIAVNCAAIPENLL 208 (464)
T ss_pred cccccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCC-------ceeeecccCCHHHH
Confidence 002345799999999999999987 678899999999999999999999999998877 999999987
Q ss_pred ---hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEE
Q 046258 247 ---VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLR 310 (900)
Q Consensus 247 ---~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~ir 310 (900)
++|+. +|.|++..+...+.++.+++|+ ||||||..|+...|. .|+++++.+ .+|
T Consensus 209 ESELFGhe-kGAFTGA~~~r~G~fE~A~GGT-LfLDEI~~mpl~~Q~--------kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 209 ESELFGHE-KGAFTGAITRRIGRFEQANGGT-LFLDEIGEMPLELQV--------KLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHhhccc-ccCcCCcccccCcceeEcCCce-EEeeccccCCHHHHH--------HHHHHHHcCeeEecCCCcccceeeE
Confidence 67887 8999999999999999999888 999999877665554 999999854 478
Q ss_pred EEEecCHHHHHHHhhccHH----HHcccceeeecCCChHHHHH----HHHHHHHHHhcccCc---ccChhHHHHHHHHhh
Q 046258 311 CIGATTLEEYRKYVEKDAA----FERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHGV---RIQDRALVVAAQLSA 379 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~a----l~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~v---~i~~eal~~l~~~s~ 379 (900)
+|++|+.+-.... ..+. |..|+.++.+..|+..||.+ +.+.+..++....+. .++++++..+..+.
T Consensus 279 iIaaT~~dL~~~v--~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~- 355 (464)
T COG2204 279 IIAATNRDLEEEV--AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD- 355 (464)
T ss_pred EEeecCcCHHHHH--HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC-
Confidence 9999987654333 2233 34499999999999998887 446666666655543 48899998888876
Q ss_pred hhccCCCChhhHHHHHH
Q 046258 380 RYITGRHLPDKAIDLVD 396 (900)
Q Consensus 380 ~~~~~~~~p~~a~~Lld 396 (900)
+|.+...|-.
T Consensus 356 -------WPGNVREL~N 365 (464)
T COG2204 356 -------WPGNVRELEN 365 (464)
T ss_pred -------CChHHHHHHH
Confidence 6766655543
No 55
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=188.37 Aligned_cols=197 Identities=22% Similarity=0.325 Sum_probs=154.4
Q ss_pred CCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
+.+++.|..++.+-|.+.+- +++...||++||||||||.||+++|.++ +..|+.|.-+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSss 279 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSS 279 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechh
Confidence 44678888888777766442 4678899999999999999999999998 8889999888
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhh----h-------c-CcEEEE
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML----A-------R-GQLRCI 312 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l----~-------~-g~irvI 312 (900)
.+.+ +|+|+.|+.++-+|..+.-.. |.+|||||||.|...+.+++..++...++.-| . + ..|-|+
T Consensus 280 tltS--KwRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 280 TLTS--KWRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhhh--hhccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 8776 899999999999999877655 77899999999999888777777766555432 1 1 236777
Q ss_pred EecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhH
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
++||.+- ++|.+|+|||+. |+++.|+.+.|.++++......+.. ++--+..++..+.+|-.+ +.
T Consensus 357 AATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGySGa-----DI 421 (491)
T KOG0738|consen 357 AATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSEGYSGA-----DI 421 (491)
T ss_pred eccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCCChH-----HH
Confidence 7887664 489999999987 9999999999999998777653322 233456688888888665 66
Q ss_pred HHHHHHHHHH
Q 046258 392 IDLVDEACAN 401 (900)
Q Consensus 392 ~~Lld~a~a~ 401 (900)
..++.+|+.+
T Consensus 422 ~nvCreAsm~ 431 (491)
T KOG0738|consen 422 TNVCREASMM 431 (491)
T ss_pred HHHHHHHHHH
Confidence 6667666643
No 56
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.82 E-value=2.2e-17 Score=187.41 Aligned_cols=169 Identities=22% Similarity=0.329 Sum_probs=124.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllD 667 (900)
.+||+||||||||++|+++|..+. .+|+.++++.+.. +|+|..+. ..+....+...+||||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~---~~~~~l~~~~l~~------------~~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQ---LPLLRLDVGKLFG------------GIVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC---CCEEEEEhHHhcc------------cccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 699999999999999999999984 4999999976432 35565442 223334445567999999
Q ss_pred cccccCH------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 668 EVEKAHI------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 668 Eidk~~~------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
|||++.. .+++.|+..|++. ..++++|+|||.
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~------------------------- 369 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANN------------------------- 369 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCC-------------------------
Confidence 9998633 2456677777642 256889999997
Q ss_pred HHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 736 VRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 736 ~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
...++|+++. |||.++.++.++.++..+|++.++.+.. ....++..++.|+.. +..|...+|++++.
T Consensus 370 -~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~--------~~~~~~~dl~~La~~--T~GfSGAdI~~lv~ 438 (489)
T CHL00195 370 -IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR--------PKSWKKYDIKKLSKL--SNKFSGAEIEQSII 438 (489)
T ss_pred -hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC--------CCcccccCHHHHHhh--cCCCCHHHHHHHHH
Confidence 3568999985 9999999999999999999999998422 011223346667654 34567889998887
Q ss_pred HHHHHHH
Q 046258 814 KKVVTEL 820 (900)
Q Consensus 814 ~~i~~~l 820 (900)
.+.....
T Consensus 439 eA~~~A~ 445 (489)
T CHL00195 439 EAMYIAF 445 (489)
T ss_pred HHHHHHH
Confidence 7665544
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=2.9e-19 Score=177.45 Aligned_cols=187 Identities=18% Similarity=0.316 Sum_probs=123.7
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
+++...+.++||++.+..+.-.++.+.. .+.+..+++|+||||+|||+||+.||+.+.. +|..++...+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANELGV---NFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhccCC---CeEeccchhhhh--
Confidence 4444455689999888887776665532 2445669999999999999999999999954 666555433221
Q ss_pred ccccccCCCCCCcccccccchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeeec--CCC-----ceeecCCeE
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTD--GQG-----RTVDFRNTV 703 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d--~~g-----~~~~~~~~~ 703 (900)
.+.+...+.. .++.|||+|||+++++.+++.|+..||+|.+.- +.| ..++.....
T Consensus 89 -----------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 -----------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -----------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -----------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1223333332 467899999999999999999999999998742 222 345666777
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
+|.+|+. .+.++++|.+||..+..+..|+.+++.+|+++... -..
T Consensus 152 ligATTr--------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~---------~l~ 196 (233)
T PF05496_consen 152 LIGATTR--------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR---------ILN 196 (233)
T ss_dssp EEEEESS--------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH---------CTT
T ss_pred Eeeeecc--------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHHH---------HhC
Confidence 8887776 46789999999977778999999999999887655 235
Q ss_pred cccCHHHHHHHHHcCC
Q 046258 784 LAVTDAALDIVLAESY 799 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~ 799 (900)
+.+++++...|+..+-
T Consensus 197 i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 197 IEIDEDAAEEIARRSR 212 (233)
T ss_dssp -EE-HHHHHHHHHCTT
T ss_pred CCcCHHHHHHHHHhcC
Confidence 7899999999998753
No 58
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=3.2e-20 Score=200.35 Aligned_cols=183 Identities=24% Similarity=0.392 Sum_probs=155.9
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL-------- 246 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l-------- 246 (900)
.+..+||++++++++++.+.. .+..+|||.|++||||..+|++||+.+.+.+.| ||.+||+++
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kP-------fV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKP-------FVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCC-------ceeeeccccchHHHHHH
Confidence 456799999999999998876 677889999999999999999999999988777 999999987
Q ss_pred hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEE
Q 046258 247 VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIG 313 (900)
Q Consensus 247 ~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~ 313 (900)
++|+. +|.|++.+..-.+.++.+++|+ ||+|||..|+.+-|. .|+++|++| .+|+|+
T Consensus 294 LFGHe-KGAFTGA~~~r~GrFElAdGGT-LFLDEIGelPL~lQa--------KLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 294 LFGHE-KGAFTGAINTRRGRFELADGGT-LFLDEIGELPLALQA--------KLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred Hhccc-ccccccchhccCcceeecCCCe-EechhhccCCHHHHH--------HHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 67887 9999999999999999999999 999999888877666 999999876 479999
Q ss_pred ecCHHHHHHHhhccHHHHc----ccceeeecCCChHHHHH----HHHHHHHHHhcccCc---ccChhHHHHHHHHh
Q 046258 314 ATTLEEYRKYVEKDAAFER----RFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHGV---RIQDRALVVAAQLS 378 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~----Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~v---~i~~eal~~l~~~s 378 (900)
|||++-...+ .++.|+. |+.++.+..|+..||.. +.+.+.+++....+. .+++++++.+.++.
T Consensus 364 ATNRDL~~~V--~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 364 ATNRDLEEMV--RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred ccchhHHHHH--HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 9999865544 5666666 88888899999888766 336777777766665 48999999888876
No 59
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.6e-19 Score=195.93 Aligned_cols=175 Identities=24% Similarity=0.387 Sum_probs=145.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEE
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILF 277 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 277 (900)
..+..||||||||||||++|+++|... ++.|+++.+.++.+ +|.|+.|..++.+|..+++.. |+|+|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~s--k~vGeSEr~ir~iF~kAR~~a-P~IiF 532 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELFS--KYVGESERAIREVFRKARQVA-PCIIF 532 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHHH--HhcCchHHHHHHHHHHHhhcC-CeEEe
Confidence 456679999999999999999999998 88899999999987 899999999999999999887 79999
Q ss_pred EcchhhhhhCCCCCCh---hhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHH
Q 046258 278 IDEIHLVLGAGRTEGS---MDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDT 347 (900)
Q Consensus 278 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~ 347 (900)
+||||.+..++.+++. ..+.+.|+..|. .+++.||++||+++. +|+++.| ||+. |+++.|+.+.|
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~-----ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM-----IDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh-----cCHHHcCCcccceeEeecCccHHHH
Confidence 9999999988755332 234556665554 457999999999986 8999999 9986 88999999999
Q ss_pred HHHHHHHHHHHhcccCcccChh-HHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 348 VSILRGLKEKYEGHHGVRIQDR-ALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 348 ~~ilr~l~~~~~~~~~v~i~~e-al~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
.+|++...++ ..++++ .+..++..+.+|-.. +...++.+||-.
T Consensus 608 ~~Ilk~~~kk------mp~~~~vdl~~La~~T~g~SGA-----el~~lCq~A~~~ 651 (693)
T KOG0730|consen 608 LEILKQCAKK------MPFSEDVDLEELAQATEGYSGA-----EIVAVCQEAALL 651 (693)
T ss_pred HHHHHHHHhc------CCCCccccHHHHHHHhccCChH-----HHHHHHHHHHHH
Confidence 9999887765 334433 567788888777654 777888888754
No 60
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=2.6e-18 Score=182.98 Aligned_cols=218 Identities=22% Similarity=0.369 Sum_probs=151.3
Q ss_pred HHHHhcHHHHHHHHH---HHH----HHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC----CCCceeEeccc
Q 046258 557 KERLIGLAEAVNAVA---ESV----LRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD----DENLLVRIDMS 625 (900)
Q Consensus 557 ~~~l~g~~~av~~l~---~~i----~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~~ 625 (900)
...++|++.+.+.|. ..+ .+...|+..+..+ .+++|+||||||||++|+++|+.+.. ...+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 345788875544443 333 2234555544444 48999999999999999999998753 23456666665
Q ss_pred ccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccC--------HHHHHHHHHHhhCCeeecCCCcee
Q 046258 626 EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAH--------ISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 626 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~--------~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
++ .|. |+|... ..+.+.+..+.++|||||||+.+. .+.++.|++.++++.
T Consensus 84 ~l---------~~~---~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~--------- 141 (261)
T TIGR02881 84 DL---------VGE---YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR--------- 141 (261)
T ss_pred Hh---------hhh---hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC---------
Confidence 53 332 444432 334566777778999999999875 457889999998632
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
.++++|++++... +.. ...++|+|.+||+..+.|++|+.+++.+|++.++..
T Consensus 142 --~~~~vila~~~~~--~~~-------------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----- 193 (261)
T TIGR02881 142 --NEFVLILAGYSDE--MDY-------------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----- 193 (261)
T ss_pred --CCEEEEecCCcch--hHH-------------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-----
Confidence 4566777765421 000 234689999999889999999999999999988862
Q ss_pred HhcCCccccCHHHHHHHHHc----CC---CCCCCchHHHHHHHHHHHHHHHHHHHcccC
Q 046258 778 AERGVALAVTDAALDIVLAE----SY---DPIYGARPIRRWLEKKVVTELSRMLVREEI 829 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~----~~---~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~ 829 (900)
. ...++++++.+|... .| +...++|.++++++.++.+...+.+-.+..
T Consensus 194 --~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~~~ 248 (261)
T TIGR02881 194 --R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKSDY 248 (261)
T ss_pred --c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 2 357999999888543 11 112339999999999998887776655543
No 61
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.79 E-value=1.6e-18 Score=200.29 Aligned_cols=228 Identities=17% Similarity=0.225 Sum_probs=178.0
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCC
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGA 639 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~ 639 (900)
++|.+..+..+...+... .....+++++|++||||+.+|++++....+...+|+.+||+.+.+....+.++|+
T Consensus 141 lig~s~~~~~~~~~i~~~-------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALV-------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhc-------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 567777777776666444 1222369999999999999999999999888899999999998776667788998
Q ss_pred CCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhccc
Q 046258 640 PPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM 719 (900)
Q Consensus 640 ~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 719 (900)
..|....... .-.+.+..+.+++||||||+.+++.+|..|+++++++.+....+......++++|+||+.+......
T Consensus 214 ~~~~~~~~~~-~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~-- 290 (441)
T PRK10365 214 EKGAFTGADK-RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN-- 290 (441)
T ss_pred CCCCcCCCCc-CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH--
Confidence 6554321111 1122345567899999999999999999999999999887644433334578899999987655443
Q ss_pred CCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHH
Q 046258 720 MGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLA 796 (900)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 796 (900)
...|+++|+.|+.. .|.++||.+ +|+..++..++.++..+++.. ...+++++++.|..
T Consensus 291 -----------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 351 (441)
T PRK10365 291 -----------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDLLIH 351 (441)
T ss_pred -----------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh
Confidence 56799999999964 667788887 899999999999877654332 35699999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHH
Q 046258 797 ESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 797 ~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
+.||+| +|+|++++++++..
T Consensus 352 ~~wpgN--~reL~~~~~~~~~~ 371 (441)
T PRK10365 352 YDWPGN--IRELENAVERAVVL 371 (441)
T ss_pred CCCCCH--HHHHHHHHHHHHHh
Confidence 999999 99999999987654
No 62
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.1e-19 Score=192.36 Aligned_cols=175 Identities=26% Similarity=0.403 Sum_probs=138.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEE
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILF 277 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 277 (900)
..+..|||+||||||||.+|+++|.+. +..|+++--..|+. +|.|+.|..++.+|..++.+. |||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELlN--kYVGESErAVR~vFqRAR~sa-PCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELLN--KYVGESERAVRQVFQRARASA-PCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHHH--HHhhhHHHHHHHHHHHhhcCC-CeEEE
Confidence 457789999999999999999999987 88899999999987 899999999999999998877 99999
Q ss_pred EcchhhhhhCCCCCC---hhhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHH
Q 046258 278 IDEIHLVLGAGRTEG---SMDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDT 347 (900)
Q Consensus 278 iDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~ 347 (900)
+||+|.|.+.+..++ +..+.|.|+.-|. +..+.||++||+++. +||++.| ||+. +++..|+..||
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi-----IDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI-----IDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc-----cchhhcCCCccCceeeecCCCHHHH
Confidence 999999999876643 3455677776664 557999999999986 8999999 9987 77899999999
Q ss_pred HHHHHHHHHHHhcccCcccC-hhHHHHHHHHhh--hhccCCCChhhHHHHHHHHH
Q 046258 348 VSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSA--RYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 348 ~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~--~~~~~~~~p~~a~~Lld~a~ 399 (900)
.+||+.+.+. ++..++ +--+..++.... +|-. ++...|+.+++
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG-----ADLaaLvreAs 730 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG-----ADLAALVREAS 730 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch-----hhHHHHHHHHH
Confidence 9999988874 233332 223444555443 4433 25555555544
No 63
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=8.2e-20 Score=200.32 Aligned_cols=195 Identities=22% Similarity=0.352 Sum_probs=157.0
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL------- 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l------- 246 (900)
.+|+++||.++++.++++.+.+ ++..+|||.|++||||..+|++||+.+.+.+.| ||.+||+++
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~P-------FIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGP-------FIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCC-------eEEEecccCCHHHHHH
Confidence 5788999999999999998887 678899999999999999999999999998877 999999987
Q ss_pred -hhcccccchHHHHHHH-HHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEE
Q 046258 247 -VAGAKYRGEFEERLKA-VLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRC 311 (900)
Q Consensus 247 -~~g~~~~g~~~~~l~~-~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irv 311 (900)
++|+. .|.|++..+. ..+.++.+++|+ ||||||..|+..-|+ .|+++|+.+ .+|+
T Consensus 315 ELFGye-~GAFTGA~~~GK~GlfE~A~gGT-LFLDEIgempl~LQa--------KLLRVLQEkei~rvG~t~~~~vDVRI 384 (560)
T COG3829 315 ELFGYE-KGAFTGASKGGKPGLFELANGGT-LFLDEIGEMPLPLQA--------KLLRVLQEKEIERVGGTKPIPVDVRI 384 (560)
T ss_pred HHhCcC-CccccccccCCCCcceeeccCCe-EEehhhccCCHHHHH--------HHHHHHhhceEEecCCCCceeeEEEE
Confidence 67887 8999998875 667777888899 999999888766665 999999854 4899
Q ss_pred EEecCHHHHHHHhhccHHHHc----ccceeeecCCChHHHHHH----HHHHHHHHhcccCc--c-cChhHHHHHHHHhhh
Q 046258 312 IGATTLEEYRKYVEKDAAFER----RFQQVYVAEPSVPDTVSI----LRGLKEKYEGHHGV--R-IQDRALVVAAQLSAR 380 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~----Rf~~i~i~~P~~~e~~~i----lr~l~~~~~~~~~v--~-i~~eal~~l~~~s~~ 380 (900)
|+|||++....+ .++.|+. |+.++.+..|+..||.+. .+.+.++|...++- . ++++++..+.++.
T Consensus 385 IAATN~nL~~~i--~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~-- 460 (560)
T COG3829 385 IAATNRNLEKMI--AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYD-- 460 (560)
T ss_pred EeccCcCHHHHH--hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCC--
Confidence 999988765443 3455665 889999999988888774 35666666655553 3 7899988887766
Q ss_pred hccCCCChhhHHHHHHH
Q 046258 381 YITGRHLPDKAIDLVDE 397 (900)
Q Consensus 381 ~~~~~~~p~~a~~Lld~ 397 (900)
+|.+...|-..
T Consensus 461 ------WPGNVRELeNv 471 (560)
T COG3829 461 ------WPGNVRELENV 471 (560)
T ss_pred ------CCchHHHHHHH
Confidence 66555544433
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=3.6e-19 Score=176.77 Aligned_cols=179 Identities=26% Similarity=0.356 Sum_probs=122.2
Q ss_pred CCCCCCCCchHHHHHHHHHHc---c--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVIGRDEEIRRVVRILS---R--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~---~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
.+|++++||+..+..+.-.+. . ..-.|+||+||||+||||+|+.||+.+ +++|..++...+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKITSGPAIEK-- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEEECCC--S--
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEeccchhhhh--
Confidence 678999999998877654443 2 234689999999999999999999998 77788776544321
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc--------------------EE
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ--------------------LR 310 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~--------------------ir 310 (900)
.++ +..++ .+...+.||||||||.|.+..|. .|+++|+++. +.
T Consensus 89 --~~d----l~~il---~~l~~~~ILFIDEIHRlnk~~qe--------~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 --AGD----LAAIL---TNLKEGDILFIDEIHRLNKAQQE--------ILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --CHH----HHHHH---HT--TT-EEEECTCCC--HHHHH--------HHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred --HHH----HHHHH---HhcCCCcEEEEechhhccHHHHH--------HHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 222 22222 23345779999999999887665 9999998764 56
Q ss_pred EEEecCHHHHHHHhhccHHHHccccee-eecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQV-YVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~i-~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||||+... ..+.|++||..+ .+..++.+|...|++.-... .++.+++++...++..+ |..|.
T Consensus 152 ligATTr~g~-----ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rs------rGtPR 216 (233)
T PF05496_consen 152 LIGATTRAGL-----LSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRS------RGTPR 216 (233)
T ss_dssp EEEEESSGCC-----TSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCT------TTSHH
T ss_pred Eeeeeccccc-----cchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhc------CCChH
Confidence 7888887753 788999999975 57888999988887654443 78889999999999988 77788
Q ss_pred hHHHHHHHH
Q 046258 390 KAIDLVDEA 398 (900)
Q Consensus 390 ~a~~Lld~a 398 (900)
-|.+|+..+
T Consensus 217 iAnrll~rv 225 (233)
T PF05496_consen 217 IANRLLRRV 225 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 65
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.78 E-value=7e-19 Score=196.70 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=172.9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCC
Q 046258 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPP 641 (900)
Q Consensus 562 g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~ 641 (900)
+.+..++.+.+.+.+. .....++++.|.|||||..+||+|++... ...||+.+||..+.+....++|||..+
T Consensus 317 ~~d~s~a~l~rk~~rv-------~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 317 LLDPSRATLLRKAERV-------AATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred ccCHHHHHHHHHHHHH-------hhcCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccCc
Confidence 3444455555555554 12233599999999999999999999998 789999999999999999999999765
Q ss_pred CCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCC
Q 046258 642 GYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMG 721 (900)
Q Consensus 642 g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 721 (900)
|..-.....-....+..+.++.+|||||..++-..|..||++|++|.++.-.|.. -.-++.+|.+|+.+...+..
T Consensus 389 GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~---- 463 (606)
T COG3284 389 GAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE---- 463 (606)
T ss_pred cccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH----
Confidence 5322111111233555678899999999999999999999999999999877766 44578899999999988877
Q ss_pred ccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCH-HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCC
Q 046258 722 KVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSH-EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESY 799 (900)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~-e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 799 (900)
.+.|+.+|++|+.. .|..+||++ .|....+.+++.+.. .-.+.++++++..|..+.|
T Consensus 464 ---------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~------~~~~~l~~~~~~~l~~~~W 522 (606)
T COG3284 464 ---------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN------DWRLQLDDDALARLLAYRW 522 (606)
T ss_pred ---------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc------CCCccCCHHHHHHHHhCCC
Confidence 78899999999964 677788888 555555555555333 2358999999999999999
Q ss_pred CCCCCchHHHHHHHHHHH
Q 046258 800 DPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 800 ~~~~g~R~L~~~i~~~i~ 817 (900)
|+| .|+|.++|+.+..
T Consensus 523 PGN--irel~~v~~~~~~ 538 (606)
T COG3284 523 PGN--IRELDNVIERLAA 538 (606)
T ss_pred CCc--HHHHHHHHHHHHH
Confidence 999 9999999976543
No 66
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-18 Score=175.49 Aligned_cols=152 Identities=24% Similarity=0.327 Sum_probs=117.5
Q ss_pred eEEEEccccccC------------HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHH
Q 046258 662 SVVLFDEVEKAH------------ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVAR 729 (900)
Q Consensus 662 ~vlllDEidk~~------------~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~ 729 (900)
+++|||||||.. ..||.-||.+++...+...+| ++...+.+||++.-+....
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sK--------------- 315 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAK--------------- 315 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCC---------------
Confidence 389999999862 238999999999777777666 3555678888887653221
Q ss_pred HHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH----HHHHHHHHHHhcCCccccCHHHHHHHHHcCCC-----
Q 046258 730 DQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL----QMKDVAIRLAERGVALAVTDAALDIVLAESYD----- 800 (900)
Q Consensus 730 ~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~----~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~----- 800 (900)
-+.+-|+|-+||...|.+.+|+.+|+..|+.. .++++...++..|+.+.|++++++.|++.+|.
T Consensus 316 -------PSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ 388 (444)
T COG1220 316 -------PSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKT 388 (444)
T ss_pred -------hhhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccc
Confidence 13467999999999999999999999999954 67788888888999999999999999988764
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 801 PIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 801 ~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
.|.|||.|..++++.+...-.+ ..-.+|.++.|+.+
T Consensus 389 ENIGARRLhTvlErlLediSFe----A~d~~g~~v~Id~~ 424 (444)
T COG1220 389 ENIGARRLHTVLERLLEDISFE----APDMSGQKVTIDAE 424 (444)
T ss_pred cchhHHHHHHHHHHHHHHhCcc----CCcCCCCeEEEcHH
Confidence 6789999999998766543222 12235667776543
No 67
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=4.4e-18 Score=179.71 Aligned_cols=194 Identities=21% Similarity=0.341 Sum_probs=140.0
Q ss_pred ccChhHHHHHhcHHHHH---HHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 551 RLGQNEKERLIGLAEAV---NAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av---~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
++++...+.++||++.+ ..+.+.+.. ....+++||||||||||+||+.||..... .|..++....
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~---~f~~~sAv~~ 84 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNA---AFEALSAVTS 84 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCC---ceEEeccccc
Confidence 45666677788888666 333333322 23347999999999999999999998844 7888876431
Q ss_pred ccccccccccCCCCCCcccccccchhHHH-H---hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAV-R---RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~-~---~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
|..+-+.+.+.. + .....|||+|||+++....|+.||..+|+|. ++
T Consensus 85 -----------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------ii 134 (436)
T COG2256 85 -----------------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------II 134 (436)
T ss_pred -----------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EE
Confidence 111112222222 1 1235899999999999999999999999965 56
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
+|.+|+-++ ...++++|++|+ .++.|.||+.+++.+++++-+....+.+.. ..
T Consensus 135 lIGATTENP------------------------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~--~~ 187 (436)
T COG2256 135 LIGATTENP------------------------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGG--QI 187 (436)
T ss_pred EEeccCCCC------------------------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc--cc
Confidence 888777655 456799999999 999999999999999999866543433332 24
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+.++++++++|+..+ .+. +|..-+.++-++
T Consensus 188 ~~i~~~a~~~l~~~s-~GD--~R~aLN~LE~~~ 217 (436)
T COG2256 188 IVLDEEALDYLVRLS-NGD--ARRALNLLELAA 217 (436)
T ss_pred ccCCHHHHHHHHHhc-Cch--HHHHHHHHHHHH
Confidence 679999999999763 233 787777776433
No 68
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.4e-18 Score=189.59 Aligned_cols=170 Identities=25% Similarity=0.430 Sum_probs=137.6
Q ss_pred CCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 178 LDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.+++-|-++....+.+.+.- +++..||||||||||||.+|+++|.++ ...|+++--.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGPE 740 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPE 740 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCHH
Confidence 35677777777777775542 456789999999999999999999998 77899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCCh----hh-HHHhHhhhhh------cCcEEEEEe
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS----MD-AANLFKPMLA------RGQLRCIGA 314 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~----~~-~~~~L~~~l~------~g~irvI~a 314 (900)
++. +|.|+.|++++.+|..++++. |||||+||+|.|.|.++..|+ +| +..+|+..|. ...+.||||
T Consensus 741 LLN--MYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 741 LLN--MYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HHH--HHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 987 899999999999999999887 999999999999997765333 33 3455555443 346999999
Q ss_pred cCHHHHHHHhhccHHHHc--ccce-eeecCC-ChHHHHHHHHHHHHHHhcccCcc
Q 046258 315 TTLEEYRKYVEKDAAFER--RFQQ-VYVAEP-SVPDTVSILRGLKEKYEGHHGVR 365 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~--Rf~~-i~i~~P-~~~e~~~ilr~l~~~~~~~~~v~ 365 (900)
|||++. +||+|.| ||+. +++..+ +.+.+..+|+.+..+|.-..++.
T Consensus 818 TNRPDL-----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd 867 (953)
T KOG0736|consen 818 TNRPDL-----LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD 867 (953)
T ss_pred CCCccc-----cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC
Confidence 999997 8999999 9998 777665 45566779999999976555553
No 69
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.1e-18 Score=174.74 Aligned_cols=201 Identities=25% Similarity=0.418 Sum_probs=146.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..+.+=|++..++.|.+++... ..|+. |.-.+||+||||||||.|||++|... +..|+++..|++
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~----PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGID----PPKGVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC----CCCceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHH
Confidence 4466888999999999988654 22333 33379999999999999999999888 459999999987
Q ss_pred ccccccccccCCCCCCccccc--ccchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCC
Q 046258 628 MEQHSVSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
.++ |+|... -+.++...+.+..|+||+||||.. +.+||..|+++|..- |+.
T Consensus 222 VqK------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql---DGF- 285 (406)
T COG1222 222 VQK------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL---DGF- 285 (406)
T ss_pred HHH------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc---cCC-
Confidence 654 444332 144666777777899999999974 567999888888631 111
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKD 772 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~ 772 (900)
. ...|+-+|++||. -..++|+|+ +|||..|.|+.++.+...+|++.+..+
T Consensus 286 -D-~~~nvKVI~ATNR--------------------------~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 286 -D-PRGNVKVIMATNR--------------------------PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred -C-CCCCeEEEEecCC--------------------------ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 0 2358999999998 366899999 699999999999999999999988873
Q ss_pred HHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 773 VAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 773 ~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
..+++++ ++.|+.. +..++..+|+.++..+=+-++
T Consensus 338 -----------M~l~~dvd~e~la~~--~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 338 -----------MNLADDVDLELLARL--TEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred -----------ccCccCcCHHHHHHh--cCCCchHHHHHHHHHHhHHHH
Confidence 2334433 4445543 233445678877766555444
No 70
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.75 E-value=9e-16 Score=180.30 Aligned_cols=148 Identities=32% Similarity=0.447 Sum_probs=118.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc------cchhHHHHhCCCeE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG------GQLTEAVRRRPYSV 663 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~------~~l~~~~~~~~~~v 663 (900)
++|+.||+.+|||++...+|+..+. +|+|||-.+. .+..+.+|. |+.-+.| |.|.+++|+ +-+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tgh---kfVRINNHEH---TdlqeYiGT---yvTdd~G~lsFkEGvLVeAlR~--GyW 958 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGH---KFVRINNHEH---TDLQEYIGT---YVTDDDGSLSFKEGVLVEALRR--GYW 958 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCc---cEEEecCccc---chHHHHhhc---eeecCCCceeeehhHHHHHHhc--CcE
Confidence 4999999999999999999999955 9999999874 445677775 5554444 667888884 679
Q ss_pred EEEccccccCHHHHHHHHHHhhCCe-ee--cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDDGR-LT--DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~g~-~~--d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
++|||..-++.+|+.+|.++||+.+ +. ......+.+.+.++.+|-|++.-. ++ ++.+
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Y------gG--------------RK~L 1018 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGY------GG--------------RKGL 1018 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccc------cc--------------hHHH
Confidence 9999999999999999999999764 22 233455677888999999976321 11 5778
Q ss_pred cHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 741 RPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
+.+|++|| .-++|....++++..|+...
T Consensus 1019 SrAFRNRF-lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1019 SRAFRNRF-LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred HHHHHhhh-HhhhcccCcHHHHHHHHhcc
Confidence 99999999 77899999999999998653
No 71
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.75 E-value=1e-16 Score=182.00 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=146.5
Q ss_pred CCCCCCCCchHHHHHHHHHHc----------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 176 GKLDPVIGRDEEIRRVVRILS----------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~----------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.+++++.|.+...+.+.+... -..+.++||+||||||||++|+++|..+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 345667887665554443211 1356679999999999999999999998 67799999998
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCCh----hhHHHhHhhhhh--cCcEEEEEecCHHH
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS----MDAANLFKPMLA--RGQLRCIGATTLEE 319 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~--~g~irvI~att~~~ 319 (900)
+.. +|.|+.+.+++.+|..++... |+||||||||.++...+..++ ....+.++..|. +..+.+|++||+..
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 876 468999999999999877655 899999999998875333222 233344455554 34688889998776
Q ss_pred HHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHH
Q 046258 320 YRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVD 396 (900)
Q Consensus 320 ~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld 396 (900)
. +|+++.| ||+. ++++.|+.++|.+|++.+..++... ...+..+..++..+.+|-.. +...++.
T Consensus 372 ~-----Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfSGA-----dI~~lv~ 438 (489)
T CHL00195 372 L-----LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFSGA-----EIEQSII 438 (489)
T ss_pred h-----CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---cccccCHHHHHhhcCCCCHH-----HHHHHHH
Confidence 4 8999988 9986 7889999999999999888774321 12344467788888777443 6666666
Q ss_pred HHHHH
Q 046258 397 EACAN 401 (900)
Q Consensus 397 ~a~a~ 401 (900)
+|+..
T Consensus 439 eA~~~ 443 (489)
T CHL00195 439 EAMYI 443 (489)
T ss_pred HHHHH
Confidence 66543
No 72
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-17 Score=177.18 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=145.0
Q ss_pred CCCCCCCCchHHH---HHHHHHHcc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEI---RRVVRILSR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i---~~l~~~l~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|+++-|.+++. +.+++.|.. +-+..|||+||||||||.||+++|-+. +++|++..-
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~sG 370 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYASG 370 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEeccc
Confidence 4578889988754 555555542 446789999999999999999999765 555998876
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhH---HHhHhhhhh----cCcEEEEEecC
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDA---ANLFKPMLA----RGQLRCIGATT 316 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~---~~~L~~~l~----~g~irvI~att 316 (900)
+.+.. .|.|.=..+++++|..++... ||||||||||.+-+.+.......+ .|+|+--|. +-.|.||++||
T Consensus 371 SEFdE--m~VGvGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 371 SEFDE--MFVGVGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred cchhh--hhhcccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 66544 566777789999999988765 999999999999877655222222 344443332 45799999999
Q ss_pred HHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 317 LEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
..+. +|++|.| ||+. |.++.|+..-|.+||.....+.-... .+++.+ +++-+.+| --++...
T Consensus 448 fpe~-----LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~--~VD~~i---iARGT~GF-----sGAdLaN 512 (752)
T KOG0734|consen 448 FPEA-----LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDE--DVDPKI---IARGTPGF-----SGADLAN 512 (752)
T ss_pred Chhh-----hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCccc--CCCHhH---hccCCCCC-----chHHHHH
Confidence 9885 8999999 9997 88999999999999988777632221 233332 33333222 3346777
Q ss_pred HHHHHHHHhhhhc
Q 046258 394 LVDEACANVRVQL 406 (900)
Q Consensus 394 Lld~a~a~~~~~~ 406 (900)
|+..|+-+.....
T Consensus 513 lVNqAAlkAa~dg 525 (752)
T KOG0734|consen 513 LVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHHhcC
Confidence 8888776655443
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=8.1e-17 Score=171.49 Aligned_cols=191 Identities=20% Similarity=0.287 Sum_probs=139.7
Q ss_pred CCCCCCchHHHHHHHHHHcc---------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 178 LDPVIGRDEEIRRVVRILSR---------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~---------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
++.++|.+...+++.++... ....|++|+||||||||++|+++|+.+...+. +....++.++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~~ 81 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEVE 81 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEec
Confidence 45688988877666543210 13457899999999999999999998755332 1245689999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHH
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEY 320 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~ 320 (900)
++.+.. .+.|+....++.++..+ . +.||||||+|.|...++.....+..+.|.+.++. +.+++|++++..+.
T Consensus 82 ~~~l~~--~~~g~~~~~~~~~~~~a---~-~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 82 RADLVG--EYIGHTAQKTREVIKKA---L-GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred HHHhhh--hhccchHHHHHHHHHhc---c-CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 988775 46787777777666543 3 4579999999997543332335566778787764 46778888876665
Q ss_pred HHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 321 RKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 321 ~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
..+...+|+|.+||.. +.++.++.+++..|++.++.. .+..++++++..+.....+.
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~ 213 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKV 213 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHH
Confidence 5666789999999964 888888999999999887765 45678899988887765443
No 74
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.73 E-value=6.9e-17 Score=164.55 Aligned_cols=183 Identities=23% Similarity=0.331 Sum_probs=135.7
Q ss_pred CccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC-Cce--eEecc
Q 046258 548 PVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE-NLL--VRIDM 624 (900)
Q Consensus 548 ~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~-~~~--i~i~~ 624 (900)
+++++++-....+.||+..|..+.+++.+. ..| ++||+||||||||+.|+++|+++++.+ .+. ...+.
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~-------~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRR-------ILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhc-------CCc--eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 356778888899999999999999999773 455 699999999999999999999998821 111 11122
Q ss_pred cccccccccccccCCCCCCcccccccc---hhHHH------HhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCc
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQ---LTEAV------RRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGR 695 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~---l~~~~------~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~ 695 (900)
|.. .|-. ++...... ++... ...|+.|++|||.|.|..+.|++|.+.||+
T Consensus 97 Sde---------rGis---vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--------- 155 (346)
T KOG0989|consen 97 SDE---------RGIS---VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--------- 155 (346)
T ss_pred ccc---------cccc---chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc---------
Confidence 221 1110 00000000 11111 123568999999999999999999999996
Q ss_pred eeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHH
Q 046258 696 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAI 775 (900)
Q Consensus 696 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~ 775 (900)
...+++||+.+|. ...+++++.+|| ..+.|.+|..+++...++....
T Consensus 156 --~s~~trFiLIcny--------------------------lsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~---- 202 (346)
T KOG0989|consen 156 --FSRTTRFILICNY--------------------------LSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIAS---- 202 (346)
T ss_pred --cccceEEEEEcCC--------------------------hhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHH----
Confidence 2367899999998 577899999999 8999999999998777766655
Q ss_pred HHHhcCCccccCHHHHHHHHHcC
Q 046258 776 RLAERGVALAVTDAALDIVLAES 798 (900)
Q Consensus 776 ~~~~~~~~~~~~~~a~~~l~~~~ 798 (900)
++ .+.++++++++|+..+
T Consensus 203 ---~E--~v~~d~~al~~I~~~S 220 (346)
T KOG0989|consen 203 ---KE--GVDIDDDALKLIAKIS 220 (346)
T ss_pred ---Hh--CCCCCHHHHHHHHHHc
Confidence 34 3689999999999864
No 75
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.73 E-value=3.7e-16 Score=183.44 Aligned_cols=149 Identities=34% Similarity=0.451 Sum_probs=112.8
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccch-------hHHHHhCCCeE
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQL-------TEAVRRRPYSV 663 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l-------~~~~~~~~~~v 663 (900)
+||.|.||+|||+|..++|+..+. +++|||+|+ +.+.-.|+|+.. ..+++|.+ ..+++ .+.+
T Consensus 1546 ilLEGsPGVGKTSlItaLAr~tG~---kliRINLSe---QTdL~DLfGsd~---Pve~~Gef~w~dapfL~amr--~G~W 1614 (4600)
T COG5271 1546 ILLEGSPGVGKTSLITALARKTGK---KLIRINLSE---QTDLCDLFGSDL---PVEEGGEFRWMDAPFLHAMR--DGGW 1614 (4600)
T ss_pred eeecCCCCccHHHHHHHHHHHhcC---ceEEeeccc---cchHHHHhCCCC---CcccCceeEecccHHHHHhh--cCCE
Confidence 999999999999999999999954 999999999 555677888742 22234432 22333 6789
Q ss_pred EEEccccccCHHHHHHHHHHhhCCe--eecCCCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDDGR--LTDGQGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~g~--~~d~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
++|||+.-++.+|+..|..+||..+ +...-...++. .|.++.+|-|+... ..+ ++.+
T Consensus 1615 VlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q-----ggG---------------RKgL 1674 (4600)
T COG5271 1615 VLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ-----GGG---------------RKGL 1674 (4600)
T ss_pred EEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc-----CCC---------------cccC
Confidence 9999999999999999999999643 22222333333 57888888887421 001 5779
Q ss_pred cHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 741 RPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
|..|++|| .+|....|+.+|+..|+.+...
T Consensus 1675 PkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1675 PKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred CHHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 99999999 8888888999999999987544
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.73 E-value=9.5e-17 Score=179.94 Aligned_cols=198 Identities=25% Similarity=0.345 Sum_probs=146.9
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
.++++.|.+.+++.+.+.+.- ..+.++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeeh
Confidence 345688999999998886531 356789999999999999999999988 666999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-------cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-------RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~irvI~ 313 (900)
+.+.. .|.|+.+..++.+|..+.... ++||||||+|.+.+.+.. +++.+....+..++. .+.+++|+
T Consensus 199 ~~l~~--~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 199 SELVQ--KFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred HHHhH--hhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 98875 567888888888888776644 788999999999865443 223344444444442 35799999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+... .|+++.+ ||+. |.++.|+.++|.+|++.+...+.... +..+..++..+.+| .+.+
T Consensus 276 aTn~~~~-----ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-----~~~~~~la~~t~g~-----sgad 340 (389)
T PRK03992 276 ATNRIDI-----LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-----DVDLEELAELTEGA-----SGAD 340 (389)
T ss_pred ecCChhh-----CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-----cCCHHHHHHHcCCC-----CHHH
Confidence 9988764 7999987 9975 88999999999999987665432111 12345566666555 4447
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
...++.+|+...
T Consensus 341 l~~l~~eA~~~a 352 (389)
T PRK03992 341 LKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHH
Confidence 777888777543
No 77
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.3e-17 Score=164.87 Aligned_cols=184 Identities=21% Similarity=0.351 Sum_probs=143.5
Q ss_pred CCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 178 LDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.+++-|-+.+.+.|.+.+- |...+.+||+|||||||+.||+++|... |..|++++-++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSSD 201 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSD 201 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehHH
Confidence 3567777777777776442 3456789999999999999999999886 77899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhh---------hcCcEEEEEecC
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML---------ARGQLRCIGATT 316 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l---------~~g~irvI~att 316 (900)
|++ +|-|+.+..++.+|..+++.. |.|+||||||.|++++.. +..+++..++..+ .+..+-|+|+||
T Consensus 202 LvS--KWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVS--KWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHH--HHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 997 789999999999999888866 889999999999887654 5556665554322 134689999998
Q ss_pred HHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccC
Q 046258 317 LEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITG 384 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~ 384 (900)
-+-. +|.+++|||+. |+++.|....|..|++-.... ..-.++..-+..+...+.+|-..
T Consensus 278 iPw~-----LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 278 IPWV-----LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred Cchh-----HHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCcC
Confidence 7654 89999999986 999999888777776432211 12336777788888888888554
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.71 E-value=5.6e-16 Score=165.82 Aligned_cols=186 Identities=20% Similarity=0.262 Sum_probs=135.7
Q ss_pred CCCCchHHHHHHHHHHc--------c-------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 180 PVIGRDEEIRRVVRILS--------R-------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~--------~-------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
+++|.+...+++.++.. + ....|++|+||||||||++|+++|+.+...++- .+.+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~---~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI---KKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC---CCCceEEecHH
Confidence 48888877766655432 1 134468999999999999999999987553321 24569999988
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhc--CcEEEEEecCHHHHH
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLAR--GQLRCIGATTLEEYR 321 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~--g~irvI~att~~~~~ 321 (900)
.+.. .+.|+.+.....++.. +. +.||||||+|.|...+.. +.+.++.+.|..+|++ +.+++|++++.....
T Consensus 101 ~l~~--~~~g~~~~~~~~~l~~---a~-ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 101 DLVG--QYIGHTAPKTKEVLKK---AM-GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHH--HHhccchHHHHHHHHH---cc-CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 8765 3566665555555443 44 347999999999653322 3356677888888874 468999999887777
Q ss_pred HHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 322 KYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 322 ~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
.+...+|+|.+||.. |.++.++.+++..|++.++++. +..+++++...+..+.
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i 228 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYI 228 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHH
Confidence 777889999999985 8889999999999998888773 4557777766665543
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.5e-16 Score=177.19 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=144.1
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc---
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE--- 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~--- 626 (900)
.++++...+.++||++++..+...+... +....+||+||+|||||++|+.+|+.+++...+ ....|..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~-~~~pCg~C~s 80 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPI-GNEPCNECTS 80 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhcCccccc-CccccCCCcH
Confidence 3567777889999999999998888654 222248999999999999999999999873211 0111221
Q ss_pred ---cccccc--cccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCcee
Q 046258 627 ---YMEQHS--VSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 627 ---~~~~~~--~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
+..... +-.+-+ ....|.+..+.+.+.+. ...+.|++|||+|+++.+.++.||..|++
T Consensus 81 C~~i~~g~~~dviEIda--as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE----------- 147 (484)
T PRK14956 81 CLEITKGISSDVLEIDA--ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE----------- 147 (484)
T ss_pred HHHHHccCCccceeech--hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------
Confidence 111100 001100 01122222222333333 23567999999999999999999999987
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
...+++||++||. ...+++.+++|| ..+.|.+++.+++.+.+++.+.
T Consensus 148 Pp~~viFILaTte--------------------------~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~------ 194 (484)
T PRK14956 148 PPAHIVFILATTE--------------------------FHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCK------ 194 (484)
T ss_pred CCCceEEEeecCC--------------------------hhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHH------
Confidence 3467889988876 356889999999 8999999999999888777665
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++..|++.+- .+.|...+++++.+
T Consensus 195 -~Eg--i~~e~eAL~~Ia~~S~---Gd~RdAL~lLeq~i 227 (484)
T PRK14956 195 -IEN--VQYDQEGLFWIAKKGD---GSVRDMLSFMEQAI 227 (484)
T ss_pred -HcC--CCCCHHHHHHHHHHcC---ChHHHHHHHHHHHH
Confidence 233 6899999999997643 34888888887654
No 80
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=156.68 Aligned_cols=201 Identities=28% Similarity=0.404 Sum_probs=139.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCC-----CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQ-----QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~-----~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
.+.++||++|-+...-.++-. ..|. .|. ++||+||||||||++|+++|... +.||+.+...+
T Consensus 120 ~ddViGqEeAK~kcrli~~yL----enPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~----- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYL----ENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATE----- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHh----hChHHhcccCcc-eeEEECCCCccHHHHHHHHhccc---CCceEEechHH-----
Confidence 456889997755433222211 1221 244 89999999999999999999887 45888887754
Q ss_pred ccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH------------HHHHHHHHHhhCCeeecCCCcee
Q 046258 632 SVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI------------SVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~------------~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
|+|. |||.... ..+.+..++...||+||||+|.+.- ++.|+||.-||. .-
T Consensus 187 ----liGe---hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i~-------- 250 (368)
T COG1223 187 ----LIGE---HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-IK-------- 250 (368)
T ss_pred ----HHHH---HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-cc--------
Confidence 5554 5553322 3355566666779999999997642 367999999983 21
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
.-..++.|++||.+ ..++|+..+||.+-|.|.-++.++...|++.+++.+
T Consensus 251 eneGVvtIaaTN~p--------------------------~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---- 300 (368)
T COG1223 251 ENEGVVTIAATNRP--------------------------ELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---- 300 (368)
T ss_pred cCCceEEEeecCCh--------------------------hhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----
Confidence 12357889999974 557899999999999999999999999999999833
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVRE 827 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~ 827 (900)
.+.++.. +++++.. +..++.|+++. +.+.++|-++|..+
T Consensus 301 -----Plpv~~~-~~~~~~~--t~g~SgRdike---kvlK~aLh~Ai~ed 339 (368)
T COG1223 301 -----PLPVDAD-LRYLAAK--TKGMSGRDIKE---KVLKTALHRAIAED 339 (368)
T ss_pred -----CCccccC-HHHHHHH--hCCCCchhHHH---HHHHHHHHHHHHhc
Confidence 2344433 5566543 33455777654 44667777777665
No 81
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-16 Score=176.33 Aligned_cols=182 Identities=24% Similarity=0.380 Sum_probs=144.8
Q ss_pred CCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 179 DPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
+++-|..+...-+.+++.- +.+.++||+||||||||.+|.++|... +.+|+.+-...
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKGPE 736 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKGPE 736 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecCHH
Confidence 4555655555555554431 456689999999999999999999988 88899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC--CC-hhhHHHhHhhhhhc----CcEEEEEecCHH
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT--EG-SMDAANLFKPMLAR----GQLRCIGATTLE 318 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~--~~-~~~~~~~L~~~l~~----g~irvI~att~~ 318 (900)
++. +|.|..|+.++.+|..+..+. |||||+||+|.+.|.++. .| ...+.|.|+.-|.. ..+.++++|+++
T Consensus 737 lL~--KyIGaSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 737 LLS--KYIGASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred HHH--HHhcccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 998 889999999999999998776 999999999999998765 22 34577888888763 258899999998
Q ss_pred HHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 319 EYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 319 ~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
++ +||+|.| |++. ++.+.|+..+|.+|+..+...+.... +-.++.++..+++|-.
T Consensus 814 dl-----iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~-----~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 814 DL-----IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT-----DVDLECLAQKTDGFTG 871 (952)
T ss_pred cc-----cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc-----ccchHHHhhhcCCCch
Confidence 87 8999999 9987 77899999999999999988643322 3334556677766643
No 82
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=7.5e-16 Score=155.36 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=141.7
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
+++......+||+...+++.-.++.++ ..+.+..|+||+||||.|||+||..||+.++. ++.......+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAK----KRGEALDHVLLFGPPGLGKTTLAHIIANELGV---NLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHH----hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---CeEecccccccC--
Confidence 455666788999988888887777763 33566779999999999999999999999954 433333222211
Q ss_pred ccccccCCCCCCcccccccchhHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhCCeeec-------CCCceeecCCeE
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTD-------GQGRTVDFRNTV 703 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d-------~~g~~~~~~~~~ 703 (900)
.+.+...+. -.++.|||+|||+.+++.+-+.|+.+||+-++-- .....++.....
T Consensus 91 -----------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 -----------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -----------------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 133444444 3478999999999999999999999999876531 223456777777
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
+|.+|+. .+.+..+|.+||..+..+..|+.+|+..|+.+.-..+ .
T Consensus 154 LIGATTr--------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---------~ 198 (332)
T COG2255 154 LIGATTR--------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---------G 198 (332)
T ss_pred Eeeeccc--------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---------C
Confidence 8877765 4568899999999999999999999999998876522 4
Q ss_pred cccCHHHHHHHHHcC
Q 046258 784 LAVTDAALDIVLAES 798 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~ 798 (900)
+.+++++...|+..+
T Consensus 199 i~i~~~~a~eIA~rS 213 (332)
T COG2255 199 IEIDEEAALEIARRS 213 (332)
T ss_pred CCCChHHHHHHHHhc
Confidence 788999999998764
No 83
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.70 E-value=4.8e-16 Score=173.04 Aligned_cols=198 Identities=19% Similarity=0.253 Sum_probs=144.7
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+++++.|.+..++.+.+.+.- ..+.++||+||||||||++|+++|..+ +..|+.+.+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVG 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 456788988888888775531 346789999999999999999999987 666999988
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-------cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-------RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~irvI~ 313 (900)
+.+.. +|.|+.+..++.+|..+.... |+||||||+|.+...+.. +.+......+..++. .+.+.+|+
T Consensus 213 s~l~~--k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 213 SEFVQ--KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred HHHHH--HhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 87765 567888888999998877654 889999999999865422 223333334443332 35789999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+|++.+. .||++.| ||+. |+++.|+..+|..|++.+..++..... -.+..++..+.+| .+++
T Consensus 290 aTN~~d~-----LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-----vd~~~la~~t~g~-----sgaD 354 (398)
T PTZ00454 290 ATNRADT-----LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-----VDLEDFVSRPEKI-----SAAD 354 (398)
T ss_pred ecCCchh-----CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----cCHHHHHHHcCCC-----CHHH
Confidence 9987764 8999988 9976 889999999999999988765322111 1234555555444 4557
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
...++.+|+...
T Consensus 355 I~~l~~eA~~~A 366 (398)
T PTZ00454 355 IAAICQEAGMQA 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 778888777543
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.69 E-value=3.2e-16 Score=161.87 Aligned_cols=185 Identities=24% Similarity=0.343 Sum_probs=131.2
Q ss_pred cHHHHc--CCCCCCCCchHHHH---HHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 170 DLVEQA--GKLDPVIGRDEEIR---RVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 170 ~l~~~a--~~~~~~iG~~~~i~---~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.|.+.. .++++.+|++..+- -+...+....-++++|+||||||||++|+.|+...... ...|+++ +
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfvel--S 197 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVEL--S 197 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEE--e
Confidence 344444 56777777766542 23333455677889999999999999999999876332 3446666 4
Q ss_pred hhhhcccccchHHHHHHHHHHHHHH----cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHH
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEE----AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEY 320 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~ 320 (900)
+..++.. .++.+|+..++ .+..+||||||||++....|. .+++.+++|.|.+||+||.++.
T Consensus 198 At~a~t~-------dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD--------~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 198 ATNAKTN-------DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD--------TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred ccccchH-------HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh--------cccceeccCceEEEecccCCCc
Confidence 4444332 34455544432 355799999999999998888 9999999999999999987775
Q ss_pred HHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcc----cC-----cccChhHHHHHHHHhhhh
Q 046258 321 RKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGH----HG-----VRIQDRALVVAAQLSARY 381 (900)
Q Consensus 321 ~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~----~~-----v~i~~eal~~l~~~s~~~ 381 (900)
++.+.+|.+|+.++.+...+.++...||+.-...+... .+ +.+++.++++++.++.+.
T Consensus 263 ---Fqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 263 ---FQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred ---cchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 56789999999988887777878888885533322211 11 236778888888888654
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3.1e-16 Score=180.26 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=142.2
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-cc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DM 624 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 624 (900)
.|+++...+.++||++.++.+.+.+... +....+||+||+|||||++|+.|++.+++... ++-.+ +|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 3567778889999999999999887543 22235799999999999999999999986321 11111 12
Q ss_pred cccccccc--cccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 625 SEYMEQHS--VSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 625 ~~~~~~~~--~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
..+..... +-++-+ ....|.++.+.+.+.+.. ..+.|+||||+|+++...+|.||+.||+ .
T Consensus 80 r~I~~G~h~DviEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------P 146 (830)
T PRK07003 80 REIDEGRFVDYVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------P 146 (830)
T ss_pred HHHhcCCCceEEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------c
Confidence 22211110 011111 111222222223332222 3568999999999999999999999997 3
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||++||. ...+.+.+++|| ..+.|.+++.+++.+++...+.
T Consensus 147 P~~v~FILaTtd--------------------------~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~------- 192 (830)
T PRK07003 147 PPHVKFILATTD--------------------------PQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILG------- 192 (830)
T ss_pred CCCeEEEEEECC--------------------------hhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHH-------
Confidence 467899999986 456889999999 9999999999999988887776
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++..|++.+ .+. .|...+++.+.+
T Consensus 193 ~Eg--I~id~eAL~lIA~~A-~Gs--mRdALsLLdQAi 225 (830)
T PRK07003 193 EER--IAFEPQALRLLARAA-QGS--MRDALSLTDQAI 225 (830)
T ss_pred HcC--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHHH
Confidence 233 578999999988764 233 666666655433
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=2.2e-15 Score=161.59 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=136.2
Q ss_pred CCCCchHHHHHHHHHHc--------c-------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 180 PVIGRDEEIRRVVRILS--------R-------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~--------~-------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.++|.+...+++.++.. . ....|++|+||||||||++|+++|+.+...... ...+++.++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~---~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV---RKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc---ccceEEEecHH
Confidence 47888877666655322 0 123479999999999999999999988654321 13469999998
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhc--CcEEEEEecCHHHHH
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLAR--GQLRCIGATTLEEYR 321 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~--g~irvI~att~~~~~ 321 (900)
.+.. .+.|+....++.++.. +. +.+|||||++.|.+..+. ....++.+.|.++|+. +.+++|++++.+...
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~---a~-~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKR---AM-GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhH--hhcccchHHHHHHHHH---cc-CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 8765 4567666555555543 34 356999999998643322 3345667788888874 478999999877777
Q ss_pred HHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 322 KYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 322 ~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
.++..+|+|.+||.. |.++.++.+++..|++.+..++ +..++++++..+..+.
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l 227 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYI 227 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHH
Confidence 777889999999974 8899999999999998888773 4567788877776654
No 87
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=4.1e-16 Score=165.10 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=113.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHH----cCCC
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEE----AEGK 273 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~ 273 (900)
+.+.-++|+||||||||.+|+++|..+ ++.++.++.+++.. +|.|+.+..++.+|..+.. ...+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~s--k~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELES--ENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhc--CcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 455668999999999999999999998 88899999999987 6799999999999998875 2468
Q ss_pred eEEEEcchhhhhhCCCCC-Ch--hhHH-HhHhhhhh----------------cCcEEEEEecCHHHHHHHhhccHHHHc-
Q 046258 274 VILFIDEIHLVLGAGRTE-GS--MDAA-NLFKPMLA----------------RGQLRCIGATTLEEYRKYVEKDAAFER- 332 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~~-~~--~~~~-~~L~~~l~----------------~g~irvI~att~~~~~~~~~~d~al~~- 332 (900)
|||||||||.+.+...+. +. .... ..|+..+. .+.+.||++||+... ++|+|+|
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-----LDpALlRp 288 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-----LYAPLIRD 288 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-----CCHhHcCC
Confidence 999999999999865431 12 1222 34444332 346889999998875 8999999
Q ss_pred -ccceeeecCCChHHHHHHHHHHHHH
Q 046258 333 -RFQQVYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 333 -Rf~~i~i~~P~~~e~~~ilr~l~~~ 357 (900)
||+.. +..|+.++|.+|++.+...
T Consensus 289 GRfDk~-i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 289 GRMEKF-YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred CCCCce-eCCCCHHHHHHHHHHHhcc
Confidence 99874 4589999999999987765
No 88
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-16 Score=164.19 Aligned_cols=184 Identities=26% Similarity=0.394 Sum_probs=144.4
Q ss_pred CCCCCCCchHHHHHHHHHHc----------c----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 177 KLDPVIGRDEEIRRVVRILS----------R----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~----------~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
+++++-|-+..+..+.+.+. + +.+.++||+||||||||.+|+++|++. ++.|+.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 45667777777777666331 1 356789999999999999999999998 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhh-hhh-------cC--cEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKP-MLA-------RG--QLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~-~l~-------~g--~irvI 312 (900)
++.++. +|.|+.++.++.+|..+.... |+|+||||++.+.+.++ .++.++...++. +|. ++ .+.|+
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R~-s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQRR-STDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhcc-cchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 999987 889999999999999887666 89999999999999884 466666555543 332 22 58899
Q ss_pred EecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccC
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITG 384 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~ 384 (900)
||||++.. .|.++.||+.. +.+..|+..+|..||+-++..-... ++--+..++..+.+|-.+
T Consensus 236 gATNRP~D-----lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 236 GATNRPFD-----LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred eCCCCCcc-----HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCCcHH
Confidence 99998863 89999999975 8899999999999999888763222 222345678888888554
No 89
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.68 E-value=1e-15 Score=177.79 Aligned_cols=198 Identities=23% Similarity=0.333 Sum_probs=143.1
Q ss_pred CCCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-++++++|.+....++.+++. ...+.++||+||||||||++|+++|... +.+|+.+++
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccH
Confidence 356678898876665555443 2345689999999999999999999886 666999998
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---Chh---hHHHhHhhhh----hcCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSM---DAANLFKPML----ARGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~---~~~~~L~~~l----~~g~irvI~ 313 (900)
+.+.. .+.|..+..++.+|..+.... |+||||||+|.+...++.. +.. ...+.|+..| .++.+.||+
T Consensus 122 ~~~~~--~~~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 122 SDFVE--MFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 87765 456777788999998887654 7899999999998766541 121 2334444444 345689999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+... +|+++.| ||+. |.++.|+.++|.+|++.+.... ... ++..+..++..+.+| .+.+
T Consensus 199 aTn~~~~-----ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~-----sgad 263 (495)
T TIGR01241 199 ATNRPDV-----LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGF-----SGAD 263 (495)
T ss_pred ecCChhh-----cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCC-----CHHH
Confidence 9988764 8999998 8976 8899999999999998776542 111 233345666666554 4447
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
...++.+++..
T Consensus 264 l~~l~~eA~~~ 274 (495)
T TIGR01241 264 LANLLNEAALL 274 (495)
T ss_pred HHHHHHHHHHH
Confidence 77888877643
No 90
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.7e-16 Score=176.15 Aligned_cols=204 Identities=19% Similarity=0.248 Sum_probs=140.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----C-----ceeE
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----N-----LLVR 621 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~-----~~i~ 621 (900)
++++...+.++||++.++.+.+.+...+ -+ ..+||+||+|||||++|+.||+.+++.. . ++..
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~gR-------Lp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQR-------LH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhCC-------Cc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 4667778899999999999999987652 22 3579999999999999999999998731 1 1111
Q ss_pred e-ccccccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC
Q 046258 622 I-DMSEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 622 i-~~~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
+ +|..+.... ++-++-+ ....|.+..+.+.+.+.. ..+.|+||||+|+++...+|.||+.||+
T Consensus 81 C~sC~~I~aG~hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-------- 150 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-------- 150 (700)
T ss_pred cHHHHHHHcCCCCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc--------
Confidence 1 111111110 0011111 112222332333333332 3468999999999999999999999997
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
...+++||++||. ...+.+.+++|| ..+.|.+++.+++.+.+.+.+.
T Consensus 151 ---PP~~v~FILaTte--------------------------p~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~--- 197 (700)
T PRK12323 151 ---PPEHVKFILATTD--------------------------PQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG--- 197 (700)
T ss_pred ---CCCCceEEEEeCC--------------------------hHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHH---
Confidence 3367888888886 456789999999 9999999999999888887776
Q ss_pred HHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
..| +.+++++++.|+..+- + +.|...+++++
T Consensus 198 ----~Eg--i~~d~eAL~~IA~~A~-G--s~RdALsLLdQ 228 (700)
T PRK12323 198 ----EEG--IAHEVNALRLLAQAAQ-G--SMRDALSLTDQ 228 (700)
T ss_pred ----HcC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHH
Confidence 233 5788888888886532 2 36666665543
No 91
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.67 E-value=9.7e-16 Score=178.59 Aligned_cols=203 Identities=14% Similarity=0.196 Sum_probs=130.5
Q ss_pred HHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC-----------ceeecCCeEEEEccCCCcHHHhcccCCcc
Q 046258 655 AVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG-----------RTVDFRNTVIIMTSNLGAEHLLSGMMGKV 723 (900)
Q Consensus 655 ~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g-----------~~~~~~~~~iI~tsn~~~~~~~~~~~~~~ 723 (900)
.+.++.+++|||||++.+++..|..|+++|+++++....+ .++ ..++++|+++|...
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~i-p~dvrvI~a~~~~l----------- 288 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPV-PCDFIMVAAGNLDA----------- 288 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcce-eeeeEEEEecCcCH-----------
Confidence 4456788999999999999999999999999998765321 111 13678999999842
Q ss_pred chHHHHHHHHHHHHhcccHHHHhccc---ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCC
Q 046258 724 TMQVARDQVLQEVRKHFRPELLNRLD---EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYD 800 (900)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~ll~R~~---~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 800 (900)
...++|+|++||. ..+.|.+-. ++..+....++..+.+++...|-...++++++..|+++ |.
T Consensus 289 -------------l~~~dpdL~~rfk~~~v~v~f~~~~-~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~-~~ 353 (637)
T PRK13765 289 -------------LENMHPALRSRIKGYGYEVYMRDTM-EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIRE-AK 353 (637)
T ss_pred -------------HHhhhHHHHHHhccCeEEEEccccc-CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-HH
Confidence 3446899999995 445555422 34555566677666667666554568999999999976 44
Q ss_pred CCCCchH--------HHHHHHHH--------------------------HHHHHHHHHHcccC------C----C-----
Q 046258 801 PIYGARP--------IRRWLEKK--------------------------VVTELSRMLVREEI------D----E----- 831 (900)
Q Consensus 801 ~~~g~R~--------L~~~i~~~--------------------------i~~~l~~~i~~~~~------~----~----- 831 (900)
+..|.|. |..+++.+ +...+.+.++.+.. . .
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~~~~i~~~~~~~~l~~~~~~~~~~~~g~~vG~v~g 433 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKIARSIEQQLADRYIERRKDYELFVTEGGEVGRVNG 433 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHhhhhhhHHHHHHHhCCccccchhhccccceeEEEE
Confidence 4445544 33333221 11222222332220 0 0
Q ss_pred --------CC--EEEEEecCC--C--CeEEEEEecCCcccccccc-------------ccccccccCCCC--CCCCchhH
Q 046258 832 --------NS--TVYIDASPK--G--DNLVYRVQKNGGFVDAATG-------------RKSDVLIQIPNG--PRTDPSQA 882 (900)
Q Consensus 832 --------~~--~~~v~~~~~--~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~p~~--~~~~~~~~ 882 (900)
|. .|.+++..+ . +.+.+++..++.++++..- ...++|+|+|.| |||||||-
T Consensus 434 lav~g~~~G~v~~Ievev~~~~g~~~g~~~ltG~l~~~~kES~~~v~a~l~~~~g~~~~~~~i~I~~~~~~~~kdG~Sad 513 (637)
T PRK13765 434 LAVMGEDSGIVLPIMAEVTPAQSKEEGKVIATGKLKEIAKEAVQNVSAIIKKFTGKDISNYDIHIQFVQTYEGVEGDSAS 513 (637)
T ss_pred EEEeccCceEEEEEEEEEEecCCCCCCeEEeCCCcHHHHHHHHHHHHHHHHhcccccCCCeEEEEEEcCcccCCCCCcch
Confidence 22 233344432 2 6788888777666665531 356999999987 99999985
Q ss_pred Hh
Q 046258 883 VK 884 (900)
Q Consensus 883 ~~ 884 (900)
-+
T Consensus 514 La 515 (637)
T PRK13765 514 IS 515 (637)
T ss_pred HH
Confidence 43
No 92
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-16 Score=173.67 Aligned_cols=200 Identities=24% Similarity=0.362 Sum_probs=151.6
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhc-CCCCCCCCCcEEEEEechhh-------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVR-GDVPSNLADVRLIALDMGAL------- 246 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~-~~~p~~l~~~~~~~~~~~~l------- 246 (900)
.++.+||.+..++++++.+.+ ....+||++|++||||+.+|+.||....+ .+.| |+.+||+++
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~P-------FI~~NCa~~~en~~~~ 148 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAP-------FIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCC-------EEEEEHHHhCcCHHHH
Confidence 345699999999999999987 56778999999999999999999977666 3455 999999987
Q ss_pred -hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEE
Q 046258 247 -VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCI 312 (900)
Q Consensus 247 -~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI 312 (900)
++|+. +|.|+++.....+.++.+++|+ ||+|||+.|++.+|. .|+++|++| .+|+|
T Consensus 149 eLFG~~-kGaftGa~~~k~Glfe~A~GGt-LfLDEI~~LP~~~Q~--------kLl~~le~g~~~rvG~~~~~~~dVRli 218 (403)
T COG1221 149 ELFGHE-KGAFTGAQGGKAGLFEQANGGT-LFLDEIHRLPPEGQE--------KLLRVLEEGEYRRVGGSQPRPVDVRLI 218 (403)
T ss_pred HHhccc-cceeecccCCcCchheecCCCE-EehhhhhhCCHhHHH--------HHHHHHHcCceEecCCCCCcCCCceee
Confidence 56776 7888888888888888999888 999999999998887 999999865 47899
Q ss_pred EecCHHHHHHHhhccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccCccc---ChhHHHHHHHHhhhhccCC
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHGVRI---QDRALVVAAQLSARYITGR 385 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~v~i---~~eal~~l~~~s~~~~~~~ 385 (900)
+||+.+.-..+..- ..|.+|..++.+..|+..||.+ ++..+...+....+..+ +++++..+..+.
T Consensus 219 ~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~------- 290 (403)
T COG1221 219 CATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD------- 290 (403)
T ss_pred eccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC-------
Confidence 99986655444332 3566667777888898888765 44566666655555442 346677666654
Q ss_pred CChhhHH---HHHHHHHHHh
Q 046258 386 HLPDKAI---DLVDEACANV 402 (900)
Q Consensus 386 ~~p~~a~---~Lld~a~a~~ 402 (900)
+|.+.. .+++.+|+..
T Consensus 291 -~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 291 -WPGNIRELKNLVERAVAQA 309 (403)
T ss_pred -CCCcHHHHHHHHHHHHHHh
Confidence 444443 4456666554
No 93
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.4e-16 Score=176.96 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=145.5
Q ss_pred CCCCCCCCchHHHHHHHH---HHcc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVR---ILSR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~---~l~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|+++-|.+++...|.+ +|.. +-+..+||+||||||||.||+++|.+. +++|+.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 457889998876555555 4432 467789999999999999999999876 666999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCC---C-CChhhH---HHhHhhhhh----cCcEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGR---T-EGSMDA---ANLFKPMLA----RGQLRCI 312 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~---~-~~~~~~---~~~L~~~l~----~g~irvI 312 (900)
+.++.. +.|.-..+++.+|..++... |+|+||||||.+...++ . .+..+. .|+|+.-|+ .+.+.++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 988774 34444678999999887655 99999999999987663 1 333333 345554443 4569999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
++||+.+. +|++|.| ||+. |.++.|+..+|.+|++...... ....++..+..++..+..| -++
T Consensus 455 a~tnr~d~-----ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf-----~ga 520 (774)
T KOG0731|consen 455 AATNRPDI-----LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGF-----SGA 520 (774)
T ss_pred eccCCccc-----cCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCC-----cHH
Confidence 99999886 8999999 9986 8999999999999998777652 2222333333355555433 445
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+++-.
T Consensus 521 dl~n~~neaa~~ 532 (774)
T KOG0731|consen 521 DLANLCNEAALL 532 (774)
T ss_pred HHHhhhhHHHHH
Confidence 777777777744
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=2.2e-16 Score=176.54 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=135.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCC----CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGL----GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~----~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
..+.+.|++..++.+.+.+......- ...-.|..++||+||||||||++|+++|+.+.. +|+++.++++...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~~~v~~~~l~~~- 195 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TFIRVVGSELVRK- 195 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CEEecchHHHHHH-
Confidence 56789999999999988876431110 000122336999999999999999999999854 7888876654321
Q ss_pred ccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceee
Q 046258 632 SVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
|+|.... ..+....+....+||||||||.+ ++.++..|.+++..-.-. ..
T Consensus 196 -----------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------~~ 258 (364)
T TIGR01242 196 -----------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF------DP 258 (364)
T ss_pred -----------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC------CC
Confidence 2332211 12333334445689999999987 345566666666421000 01
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
..+++||+|||.. ..++++++. ||+..+.|++++.++..+|++.++..
T Consensus 259 ~~~v~vI~ttn~~--------------------------~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~---- 308 (364)
T TIGR01242 259 RGNVKVIAATNRP--------------------------DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK---- 308 (364)
T ss_pred CCCEEEEEecCCh--------------------------hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc----
Confidence 2478899999973 457888874 99999999999999999999877652
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
..+.-.++ +..|+.. +..|..++|+.++..+...++.
T Consensus 309 ---~~l~~~~~---~~~la~~--t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 309 ---MKLAEDVD---LEAIAKM--TEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred ---CCCCccCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 11111222 4445543 3346688999888776666544
No 95
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.67 E-value=8.1e-16 Score=172.08 Aligned_cols=198 Identities=21% Similarity=0.278 Sum_probs=142.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
.+++++.|.+.+++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..|+.++
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEe
Confidence 4567788999999888886641 345679999999999999999999987 55689998
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhh-------hcCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPML-------ARGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~g~irvI 312 (900)
.+.+.. +|.|+....++.+|..+... .++||||||||.+...+.. ++..+....+..++ ..+.+.+|
T Consensus 250 ~seL~~--k~~Ge~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 250 GSELIQ--KYLGDGPKLVRELFRVAEEN-APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred cchhhh--hhcchHHHHHHHHHHHHHhC-CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 887764 56788888888888877654 4889999999999865432 33444444443333 24579999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
++||+.+. .|+++.| ||+. |+++.|+..+|.+|++....++.... +..+..++..+.+| .++
T Consensus 327 ~ATNr~d~-----LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-----dvdl~~la~~t~g~-----sgA 391 (438)
T PTZ00361 327 MATNRIES-----LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-----DVDLEEFIMAKDEL-----SGA 391 (438)
T ss_pred EecCChHH-----hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-----CcCHHHHHHhcCCC-----CHH
Confidence 99987764 7899986 8975 88999999999999987766532111 11234455555444 344
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+|+..
T Consensus 392 dI~~i~~eA~~~ 403 (438)
T PTZ00361 392 DIKAICTEAGLL 403 (438)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 96
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.6e-16 Score=160.13 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=146.6
Q ss_pred HHHHhcHHHHHHHHHHHHHH------HhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLR------SRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 630 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~------~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 630 (900)
++.|.|+.+|.+-+.+++.. ...|+. +|--.+|++||||||||.|||++|..... .|+.+.-+.++.
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPGTGKTlLAKAvATEc~t---TFFNVSsstltS- 283 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPGTGKTLLAKAVATECGT---TFFNVSSSTLTS- 283 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCCCcHHHHHHHHHHhhcC---eEEEechhhhhh-
Confidence 34577788888777777653 344555 45456999999999999999999999843 666666655433
Q ss_pred cccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEcccccc------------CHHHHHHHHHHhhCCeeecCCCce
Q 046258 631 HSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKA------------HISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~------------~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
+ |.|.++. +.|++..+....++|||||||.+ +..|-+.||..||.-. ..
T Consensus 284 ----K-------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~------~t 346 (491)
T KOG0738|consen 284 ----K-------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ------GT 346 (491)
T ss_pred ----h-------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc------cc
Confidence 2 5555554 66888888887899999999876 3458899999998311 11
Q ss_pred eec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHH
Q 046258 697 VDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAI 775 (900)
Q Consensus 697 ~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~ 775 (900)
.+. .-++++++||.+.+ ++.+|+.||-..|.++-++.+....+++..|.
T Consensus 347 ~e~~k~VmVLAATN~PWd--------------------------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~---- 396 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWD--------------------------IDEALRRRLEKRIYIPLPDAEARSALIKILLR---- 396 (491)
T ss_pred cccceeEEEEeccCCCcc--------------------------hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc----
Confidence 111 23778889998753 67899999966666666888999999888887
Q ss_pred HHHhcCCccccCHH-HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 776 RLAERGVALAVTDA-ALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 776 ~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
.+..+++ -++.|++.. ..|..-++.++++.+-+..+-+.+.
T Consensus 397 -------~~~~~~~~~~~~lae~~--eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 397 -------SVELDDPVNLEDLAERS--EGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred -------cccCCCCccHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHh
Confidence 2333333 355565441 2344569999998888888877665
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.66 E-value=1.3e-15 Score=162.00 Aligned_cols=168 Identities=27% Similarity=0.307 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~ 644 (900)
..++.+.+.+..+... .+ ++||.||||||||++|+++|+.++ .++++++|.. ....+.++|...+|.
T Consensus 5 ~~~~~l~~~~l~~l~~----g~---~vLL~G~~GtGKT~lA~~la~~lg---~~~~~i~~~~---~~~~~dllg~~~~~~ 71 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS----GY---PVHLRGPAGTGKTTLAMHVARKRD---RPVMLINGDA---ELTTSDLVGSYAGYT 71 (262)
T ss_pred HHHHHHHHHHHHHHhc----CC---eEEEEcCCCCCHHHHHHHHHHHhC---CCEEEEeCCc---cCCHHHHhhhhcccc
Confidence 3455566655554221 22 599999999999999999999874 4999999987 333456777543332
Q ss_pred ccc--------------------cccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC----cee-ec
Q 046258 645 GHE--------------------EGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG----RTV-DF 699 (900)
Q Consensus 645 g~~--------------------~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g----~~~-~~ 699 (900)
... ..+.+..+++ .+.+|+||||+++++++++.|+.+|+++.++-..+ ..+ ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~ 149 (262)
T TIGR02640 72 RKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH 149 (262)
T ss_pred hhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC
Confidence 110 0133444443 45799999999999999999999999998764331 122 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
.++++|+|+|...... ...++++|++|| ..+.+..++.++..+|+...
T Consensus 150 ~~frvIaTsN~~~~~g---------------------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 150 PEFRVIFTSNPVEYAG---------------------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCCEEEEeeCCccccc---------------------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 5778999999752111 234589999999 77888888998888888764
No 98
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=179.35 Aligned_cols=203 Identities=18% Similarity=0.277 Sum_probs=139.2
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++.....++||+.+++.+.+++... +....+||+||+|||||++|+.+|+.+++... ++..+ .|-
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 456677888999999999998888654 22224699999999999999999999987321 11111 111
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.+.. ++-.+-+ ....|.+..+.+.+.+.. .++.|+||||+|+++.+.++.||+.|++ ..
T Consensus 81 ~i~~g~~~DviEidA--as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP 147 (944)
T PRK14949 81 EIAQGRFVDLIEVDA--ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PP 147 (944)
T ss_pred HHhcCCCceEEEecc--ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cC
Confidence 111110 0011111 111222222333333332 3568999999999999999999999997 33
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+. ...+.+.+++|| .++.|.|++.+++...+.+.+..
T Consensus 148 ~~vrFILaTTe--------------------------~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~------- 193 (944)
T PRK14949 148 EHVKFLLATTD--------------------------PQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ------- 193 (944)
T ss_pred CCeEEEEECCC--------------------------chhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------
Confidence 56778887765 244788999999 99999999999999888877762
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
. .+.+++++++.|+..+ .| +.|...++++
T Consensus 194 E--gI~~edeAL~lIA~~S-~G--d~R~ALnLLd 222 (944)
T PRK14949 194 E--QLPFEAEALTLLAKAA-NG--SMRDALSLTD 222 (944)
T ss_pred c--CCCCCHHHHHHHHHHc-CC--CHHHHHHHHH
Confidence 2 3678999999998763 22 2676666654
No 99
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=2.1e-15 Score=165.50 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=137.6
Q ss_pred Cc-cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEecc
Q 046258 548 PV-TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDM 624 (900)
Q Consensus 548 ~~-~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~ 624 (900)
|| +++++.....++|+++++..+...+... +.| +++|+||||||||++|+++|+.+++.. ..++.++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG-------NMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-------CCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 44 6788888999999999888877665321 334 699999999999999999999997643 23444444
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHH------hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR------RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~------~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
++......+.. .+..... ...+.|++|||+|.+....++.|+..++. .
T Consensus 73 sd~~~~~~vr~---------------~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~ 126 (319)
T PLN03025 73 SDDRGIDVVRN---------------KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------Y 126 (319)
T ss_pred cccccHHHHHH---------------HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------c
Confidence 43211000000 0000001 12467999999999999999999999985 1
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
-..++||+++|.. ..+.+++.+|| ..+.|.+++.+++..++...+.
T Consensus 127 ~~~t~~il~~n~~--------------------------~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~------- 172 (319)
T PLN03025 127 SNTTRFALACNTS--------------------------SKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVE------- 172 (319)
T ss_pred cCCceEEEEeCCc--------------------------cccchhHHHhh-hcccCCCCCHHHHHHHHHHHHH-------
Confidence 2356788888863 45678999999 8999999999999888877665
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
..| +.++++++++|+.. ..++ .|.+-+.++
T Consensus 173 ~eg--i~i~~~~l~~i~~~-~~gD--lR~aln~Lq 202 (319)
T PLN03025 173 AEK--VPYVPEGLEAIIFT-ADGD--MRQALNNLQ 202 (319)
T ss_pred HcC--CCCCHHHHHHHHHH-cCCC--HHHHHHHHH
Confidence 344 57899999999976 3344 677777775
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.3e-15 Score=153.72 Aligned_cols=186 Identities=25% Similarity=0.317 Sum_probs=138.6
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
..|++++|+++...++.-.++. ..-.|+||+||||.||||+|..||.++ |+.+-......+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsGp~leK-- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSGPALEK-- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecccccccC--
Confidence 4577899999888777665543 345589999999999999999999999 55555544333321
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--------------------CcEE
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--------------------GQLR 310 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------------g~ir 310 (900)
.| ++...+..-..+-||||||||+|.+.... .|.++|++ ..+.
T Consensus 91 --~g-------DlaaiLt~Le~~DVLFIDEIHrl~~~vEE--------~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 --PG-------DLAAILTNLEEGDVLFIDEIHRLSPAVEE--------VLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --hh-------hHHHHHhcCCcCCeEEEehhhhcChhHHH--------HhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 22 23333333444678999999999875443 88888863 2478
Q ss_pred EEEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||||+.-. +...|+.||.. ..+..++.+|...|+..-... .++.+++++...++..+ |..|.
T Consensus 154 LIGATTr~G~-----lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS------RGTPR 218 (332)
T COG2255 154 LIGATTRAGM-----LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS------RGTPR 218 (332)
T ss_pred Eeeecccccc-----ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc------cCCcH
Confidence 9999998875 67789999986 567888999988887655544 67889999988888888 77898
Q ss_pred hHHHHHHHHHHHhhhh
Q 046258 390 KAIDLVDEACANVRVQ 405 (900)
Q Consensus 390 ~a~~Lld~a~a~~~~~ 405 (900)
-|.+|+...--...+.
T Consensus 219 IAnRLLrRVRDfa~V~ 234 (332)
T COG2255 219 IANRLLRRVRDFAQVK 234 (332)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999988776555443
No 101
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.2e-15 Score=174.46 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=139.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEE
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILF 277 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 277 (900)
+.+..+||+||||||||++|+++|..+ +.+|+.++.+.++. +|.|+++..++.+|..+.... ++|||
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~s--k~vGesek~ir~~F~~A~~~~-p~iiF 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELLS--KWVGESEKNIRELFEKARKLA-PSIIF 340 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHhc--cccchHHHHHHHHHHHHHcCC-CcEEE
Confidence 344569999999999999999999987 78899999998776 789999999999999998655 89999
Q ss_pred EcchhhhhhCCCCCCh---hhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHH
Q 046258 278 IDEIHLVLGAGRTEGS---MDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDT 347 (900)
Q Consensus 278 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~ 347 (900)
|||+|.+.+.+..+.. ..+.+.|+..+. ...+.||++||+... .|+++.| ||+. ++++.|+..+|
T Consensus 341 iDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~-----ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD-----LDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred EEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccc-----cCHhhcccCccceEeecCCCCHHHH
Confidence 9999999988765332 356666666663 346889999998875 8999999 9986 88899999999
Q ss_pred HHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhh
Q 046258 348 VSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVR 403 (900)
Q Consensus 348 ~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~ 403 (900)
.+|++.....+... -..+-.+..++..+.+| ...+...++.+++....
T Consensus 416 ~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~-----sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 416 LEIFKIHLRDKKPP---LAEDVDLEELAEITEGY-----SGADIAALVREAALEAL 463 (494)
T ss_pred HHHHHHHhcccCCc---chhhhhHHHHHHHhcCC-----CHHHHHHHHHHHHHHHH
Confidence 99998877753221 12233445566655554 34477777777775443
No 102
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8e-16 Score=152.04 Aligned_cols=183 Identities=20% Similarity=0.317 Sum_probs=138.9
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
....++-|-++.|+.+++.+- -+.+..+|+|||||||||.+|++.|... +..|..+-
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLA 237 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLA 237 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhc
Confidence 445678889999999998653 1567789999999999999999999876 66677766
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-------cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-------RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~irvI 312 (900)
...+.. .|.|+-...++..|..+++.. |+|+||||++.+-..+-. .|+.++...++.++. +.++.||
T Consensus 238 gPQLVQ--MfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 238 GPQLVQ--MFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred chHHHh--hhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 566654 567777788899999888755 899999999998754422 566666666666553 5689999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
++||+.+. +||+|.| |++. |+++.|+.+.|..|+.....+..-...++ .+.++..++.|
T Consensus 315 AATNRvDi-----LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddF 376 (424)
T KOG0652|consen 315 AATNRVDI-----LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDF 376 (424)
T ss_pred eecccccc-----cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhccccc
Confidence 99999886 8999998 8875 99999999999999887766643333333 24455555444
No 103
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=2.3e-15 Score=183.09 Aligned_cols=195 Identities=22% Similarity=0.327 Sum_probs=147.3
Q ss_pred CCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
.++++.|.+...+.+.+.+. ...+.++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 46678888888777766553 1345679999999999999999999988 677999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCCh----hhHHHhHhhhhh----cCcEEEEEec
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS----MDAANLFKPMLA----RGQLRCIGAT 315 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~----~g~irvI~at 315 (900)
+.+.. +|.|+.+..++.+|..+.... ++||||||+|.|.+.++.... ..+.+.|+..|. .+.+.||++|
T Consensus 521 ~~l~~--~~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 521 PEILS--KWVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred HHHhh--cccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 98876 679999999999999888765 899999999999876654221 234555555553 4679999999
Q ss_pred CHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccC-hhHHHHHHHHhhhhccCCCChhhH
Q 046258 316 TLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
|+.+. +|+++.| ||+. ++++.|+..+|.+||+..... ..++ +..+..++..+.+|- .++.
T Consensus 598 n~~~~-----ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------~~~~~~~~l~~la~~t~g~s-----gadi 661 (733)
T TIGR01243 598 NRPDI-----LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------MPLAEDVDLEELAEMTEGYT-----GADI 661 (733)
T ss_pred CChhh-----CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------CCCCccCCHHHHHHHcCCCC-----HHHH
Confidence 98875 8999998 9986 888999999999999755443 2222 223566777776653 3355
Q ss_pred HHHHHHHHH
Q 046258 392 IDLVDEACA 400 (900)
Q Consensus 392 ~~Lld~a~a 400 (900)
..++.+|+.
T Consensus 662 ~~~~~~A~~ 670 (733)
T TIGR01243 662 EAVCREAAM 670 (733)
T ss_pred HHHHHHHHH
Confidence 555655553
No 104
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.65 E-value=1.6e-15 Score=171.92 Aligned_cols=174 Identities=21% Similarity=0.329 Sum_probs=128.4
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+.+++++.+.+. ...+.++||+||||||||++|+++|..+.....-.......|+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 456788899999988888653 1356789999999999999999999988432110000122345555
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhh----HHHhHhhhhh----cCcEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMD----AANLFKPMLA----RGQLRC 311 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~----~~~~L~~~l~----~g~irv 311 (900)
.+.+.. +|.|+.+..++.+|..+... +.++||||||+|.+...+..+.+.+ ..+.|+..|. .+.+.+
T Consensus 259 ~~eLl~--kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 259 GPELLN--KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred chhhcc--cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 555554 57899999999998877653 3589999999999987665422222 3345555553 367899
Q ss_pred EEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHH
Q 046258 312 IGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKE 356 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~ 356 (900)
|++||+.+. +||++.| ||+. |+++.|+.+++.+|++.+..
T Consensus 337 I~ATN~~d~-----LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 337 IGASNREDM-----IDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EeccCChhh-----CCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 999998875 8999998 9986 89999999999999987654
No 105
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-15 Score=149.12 Aligned_cols=167 Identities=23% Similarity=0.371 Sum_probs=133.5
Q ss_pred CCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh
Q 046258 181 VIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV 247 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~ 247 (900)
+-|-+..++.+.+++.- ..+..+||+||||||||.+|+++|+.. .|.|+.++.+.+.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselv 218 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV 218 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH
Confidence 33456667666665542 356679999999999999999999987 8899999999998
Q ss_pred hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-------cCcEEEEEecCH
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-------RGQLRCIGATTL 317 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~irvI~att~ 317 (900)
. +|.|+-...++.+|-.+++.. |.|+|.||||.+-.++.. +|+.++...++.++. ..++.+|.+||+
T Consensus 219 q--k~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 219 Q--KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred H--HHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 6 678888888899988777755 889999999999765432 556777666666653 568999999999
Q ss_pred HHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcc
Q 046258 318 EEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVR 365 (900)
Q Consensus 318 ~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~ 365 (900)
-+. +||+|.| |++. |+++.|+.+.|.+||+....+.....|++
T Consensus 296 idi-----ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 296 IDI-----LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred ccc-----ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC
Confidence 886 8999999 8875 99999999999999988777755544543
No 106
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.6e-15 Score=171.24 Aligned_cols=206 Identities=18% Similarity=0.260 Sum_probs=140.7
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++.....++||+.+++.+.+++... +....+||+||+|||||++|+++|+.+++... ++-.+ +|.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 456777889999999999999988643 32346899999999999999999999976321 11110 111
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++-.+-++ ...+.+..+.+.+.+. ..++.|++|||+|+++...++.|++.|++ ..
T Consensus 80 ~I~~g~hpDviEIDAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP 146 (702)
T PRK14960 80 AVNEGRFIDLIEIDAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PP 146 (702)
T ss_pred HHhcCCCCceEEeccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CC
Confidence 111110 01111111 1112222122222222 23568999999999999999999999997 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.++.||++|+. ...+++.+++|| .++.|.+++.+++.+.+...+. .
T Consensus 147 ~~v~FILaTtd--------------------------~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~-------k 192 (702)
T PRK14960 147 EHVKFLFATTD--------------------------PQKLPITVISRC-LQFTLRPLAVDEITKHLGAILE-------K 192 (702)
T ss_pred CCcEEEEEECC--------------------------hHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHH-------H
Confidence 56778888765 244678899999 9999999999999998888876 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.| +.++++++..|++.+- .+.|...+.+...+
T Consensus 193 Eg--I~id~eAL~~IA~~S~---GdLRdALnLLDQaI 224 (702)
T PRK14960 193 EQ--IAADQDAIWQIAESAQ---GSLRDALSLTDQAI 224 (702)
T ss_pred cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 33 5899999999987642 33777777765543
No 107
>CHL00176 ftsH cell division protein; Validated
Probab=99.65 E-value=2.7e-15 Score=175.85 Aligned_cols=197 Identities=22% Similarity=0.339 Sum_probs=139.3
Q ss_pred CCCCCCCCchHHHHHHHHHH---cc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRIL---SR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|++++|.++....+.+++ .. ..+.++||+||||||||++|+++|... +.+|+.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 46788999887766665544 22 235679999999999999999999887 566999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhh---HHHhHhhhh----hcCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMD---AANLFKPML----ARGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~---~~~~L~~~l----~~g~irvI~ 313 (900)
+.+.. .+.|....+++.+|..+.... |+||||||+|.+...+.. ++... ..+.|+..+ .+..+.+|+
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 88754 345555667888888776544 889999999999865432 12222 234444433 345789999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+.+. .|+++.| ||+. |.+..|+.++|.+||+.+.... . ..++..+..++..+.+| .+.+
T Consensus 327 aTN~~~~-----LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----~-~~~d~~l~~lA~~t~G~-----sgaD 391 (638)
T CHL00176 327 ATNRVDI-----LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----K-LSPDVSLELIARRTPGF-----SGAD 391 (638)
T ss_pred ecCchHh-----hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----c-cchhHHHHHHHhcCCCC-----CHHH
Confidence 9988764 7899987 8975 8899999999999998877651 1 12344455566555443 4446
Q ss_pred HHHHHHHHHH
Q 046258 391 AIDLVDEACA 400 (900)
Q Consensus 391 a~~Lld~a~a 400 (900)
...++.+++.
T Consensus 392 L~~lvneAal 401 (638)
T CHL00176 392 LANLLNEAAI 401 (638)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-15 Score=172.05 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=142.7
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++...+.++||++.++.+.+++... +-| ..+||+||+|||||++|+.+|+.+++... |+-.+ +|.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~-------~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ-------YLH-HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC-------CCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 456777889999999999999998654 222 35899999999999999999999987321 11111 111
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++-.+-+ .+..|.+..+.+.+.+.. .++.|++|||+|+++++.++.|++.|++ ..
T Consensus 81 ~i~~g~~~d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp 147 (509)
T PRK14958 81 EIDEGRFPDLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PP 147 (509)
T ss_pred HHhcCCCceEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cC
Confidence 111110 1111211 112233222333333332 3568999999999999999999999997 33
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+. ...+++.+++|| ..+.|.+++.+++...+...+. .
T Consensus 148 ~~~~fIlattd--------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~-------~ 193 (509)
T PRK14958 148 SHVKFILATTD--------------------------HHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLK-------E 193 (509)
T ss_pred CCeEEEEEECC--------------------------hHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHH-------H
Confidence 57888888764 345677899999 9999999999999888887776 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.| +.+++++++.|++.+ .+ +.|...+.+++.+
T Consensus 194 eg--i~~~~~al~~ia~~s-~G--slR~al~lLdq~i 225 (509)
T PRK14958 194 EN--VEFENAALDLLARAA-NG--SVRDALSLLDQSI 225 (509)
T ss_pred cC--CCCCHHHHHHHHHHc-CC--cHHHHHHHHHHHH
Confidence 33 578999999998764 23 3777777776543
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.64 E-value=2.8e-15 Score=168.13 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=139.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCC----CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGL----GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~----~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
....+.|.+..++.+.+.+......- ...-.|..++||+||||||||++|+++|+.+.. +|+.++++++...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~~i~v~~~~l~~~- 204 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TFIRVVGSELVQK- 204 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---CEEEeehHHHhHh-
Confidence 45789999999999988875421100 000123347999999999999999999999854 8999998876432
Q ss_pred ccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceee
Q 046258 632 SVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
|+|.... ..++...+....+||||||||.+ ++.++..|++++..-.-. ..
T Consensus 205 -----------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~ 267 (389)
T PRK03992 205 -----------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF------DP 267 (389)
T ss_pred -----------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc------CC
Confidence 3333221 22334444556699999999987 456677777776431100 02
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
..+++||+|||.. ..++++++. |||..|.|++++.++..+|++.++..
T Consensus 268 ~~~v~VI~aTn~~--------------------------~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~---- 317 (389)
T PRK03992 268 RGNVKIIAATNRI--------------------------DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK---- 317 (389)
T ss_pred CCCEEEEEecCCh--------------------------hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc----
Confidence 2478899999973 457888884 99999999999999999999877651
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
..+.-.++ +..|+.. +..|..++|+.++..+...++.
T Consensus 318 ---~~~~~~~~---~~~la~~--t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 318 ---MNLADDVD---LEELAEL--TEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred ---CCCCCcCC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 11111122 4455543 3456688999888776665543
No 110
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.7e-15 Score=162.33 Aligned_cols=195 Identities=22% Similarity=0.370 Sum_probs=150.4
Q ss_pred CCCCCCchHHHHHHHHHH------------ccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 178 LDPVIGRDEEIRRVVRIL------------SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.+++-|-+..-+.+.+.+ .|.....+||.||||+|||+++++||.++ ++.|+.+..++
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~iSass 221 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNISASS 221 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeeccHHH
Confidence 456666554444443322 13455679999999999999999999998 88899999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHH-----HhHhhhh-----hcCcEEEEEec
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAA-----NLFKPML-----ARGQLRCIGAT 315 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~-----~~L~~~l-----~~g~irvI~at 315 (900)
+.. +|.|+.+..++.+|..++... +.|+||||+|.++..+ ++...+.. ..|.+.. .+.++.+||||
T Consensus 222 Lts--K~~Ge~eK~vralf~vAr~~q-PsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 222 LTS--KYVGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred hhh--hccChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 887 789999999999999777655 8889999999999877 33333332 1222222 35589999999
Q ss_pred CHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
|++.- .|.+++|||+. ++++.|+.+.|..+|..+...+ +..+....+..+++++.+|-.+ +..++
T Consensus 298 N~P~e-----~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysgs-----di~~l 363 (428)
T KOG0740|consen 298 NRPWE-----LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSGS-----DITAL 363 (428)
T ss_pred CCchH-----HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCcccc-----cHHHH
Confidence 98863 89999999986 7889999999999999988873 5557788889999999999776 66677
Q ss_pred HHHHHH
Q 046258 395 VDEACA 400 (900)
Q Consensus 395 ld~a~a 400 (900)
+.+++.
T Consensus 364 ~kea~~ 369 (428)
T KOG0740|consen 364 CKEAAM 369 (428)
T ss_pred HHHhhc
Confidence 766653
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.8e-15 Score=169.32 Aligned_cols=207 Identities=21% Similarity=0.322 Sum_probs=139.1
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEec-c
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRID-M 624 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i~-~ 624 (900)
.++++...+.++||++++..+...+... +....+||+||||||||++|+++|+.++.... |+-.++ |
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 4567778889999999988888777543 23335899999999999999999999976321 111110 1
Q ss_pred ccccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 625 SEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 625 ~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
..+.... .+-.+-+ ....|.+..+.+.+.+.. ..+.|+++||+|.+....++.|+..|++ .
T Consensus 78 ~~i~~g~~~dv~el~a--a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p 144 (472)
T PRK14962 78 RSIDEGTFMDVIELDA--ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------P 144 (472)
T ss_pred HHHhcCCCCccEEEeC--cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------C
Confidence 1110000 0111111 011222222223333332 2457999999999999999999999996 2
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||++++. ...+++.+.+|| .++.|.|++.+++..+++..+.
T Consensus 145 ~~~vv~Ilattn--------------------------~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~------- 190 (472)
T PRK14962 145 PSHVVFVLATTN--------------------------LEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAE------- 190 (472)
T ss_pred CCcEEEEEEeCC--------------------------hHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHH-------
Confidence 246777776663 234688999999 7999999999999888877765
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++++|++..- .++|.+.+.++..+
T Consensus 191 ~eg--i~i~~eal~~Ia~~s~---GdlR~aln~Le~l~ 223 (472)
T PRK14962 191 AEG--IEIDREALSFIAKRAS---GGLRDALTMLEQVW 223 (472)
T ss_pred HcC--CCCCHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 233 5899999999998642 34787777776533
No 112
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=3.3e-15 Score=169.59 Aligned_cols=187 Identities=29% Similarity=0.400 Sum_probs=140.6
Q ss_pred CCCCCCCCchHHHHH---HHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 176 GKLDPVIGRDEEIRR---VVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~---l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
.++++++|++..+.. +..++......+++|+||||||||++|+.|++.+ +..|+.+++... +
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~--~--- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAVTS--G--- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecccc--c---
Confidence 457789999998766 8888887777899999999999999999999987 556888876532 1
Q ss_pred cchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 253 RGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
...++.++..+.. .+.+.||||||+|.+.... .+.|++.++++.+.+|++|+.+.. ...+++
T Consensus 74 ----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~--------q~~LL~~le~~~iilI~att~n~~---~~l~~a 138 (413)
T PRK13342 74 ----VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ--------QDALLPHVEDGTITLIGATTENPS---FEVNPA 138 (413)
T ss_pred ----HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH--------HHHHHHHhhcCcEEEEEeCCCChh---hhccHH
Confidence 1123334443321 2356789999999986543 348889999999999999876544 346899
Q ss_pred HHcccceeeecCCChHHHHHHHHHHHHHHhcccCc-ccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGV-RIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v-~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
+.+|+..+.+..++.++...+++......+. ++ .++++++..++..+.+. +..+..+++.++.
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999988999888998988888877665432 44 78899999998877433 4467777776654
No 113
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=5.4e-15 Score=167.80 Aligned_cols=191 Identities=20% Similarity=0.336 Sum_probs=139.8
Q ss_pred cccChhHHHHHhcHHHHHHH---HHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 550 TRLGQNEKERLIGLAEAVNA---VAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~---l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++++...+.++||++.+.. +.+.+... ++ .+++|+||||||||++|+.||+.+.. .|+.++++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~--------~~-~~ilL~GppGtGKTtLA~~ia~~~~~---~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG--------RL-SSMILWGPPGTGKTTLARIIAGATDA---PFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcC--------CC-ceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeccc
Confidence 35666777889999988766 66665322 22 37999999999999999999998854 788887753
Q ss_pred cccccccccccCCCCCCcccccccchhHHH----HhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCe
Q 046258 627 YMEQHSVSRLIGAPPGYVGHEEGGQLTEAV----RRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNT 702 (900)
Q Consensus 627 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~----~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~ 702 (900)
... . ....+.+.. ....+.|||||||+.+....++.|+..+++|. +
T Consensus 72 ~~~----~-------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------i 121 (413)
T PRK13342 72 SGV----K-------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------I 121 (413)
T ss_pred ccH----H-------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------E
Confidence 210 0 001111111 12256899999999999999999999998743 4
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
++|.+|+..+ ...+.+++++|| .++.|.|++.+++..++.+.+.... .++
T Consensus 122 ilI~att~n~------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~ 171 (413)
T PRK13342 122 TLIGATTENP------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL 171 (413)
T ss_pred EEEEeCCCCh------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC
Confidence 5665554332 345789999999 8999999999999999998876432 233
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+.+++++++.|++.+ .++ .|.+.+.++..+
T Consensus 172 -i~i~~~al~~l~~~s-~Gd--~R~aln~Le~~~ 201 (413)
T PRK13342 172 -VELDDEALDALARLA-NGD--ARRALNLLELAA 201 (413)
T ss_pred -CCCCHHHHHHHHHhC-CCC--HHHHHHHHHHHH
Confidence 589999999999876 555 899988887763
No 114
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-15 Score=150.12 Aligned_cols=145 Identities=23% Similarity=0.351 Sum_probs=120.7
Q ss_pred cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEE
Q 046258 197 RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVIL 276 (900)
Q Consensus 197 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL 276 (900)
-..+..+||+||||||||++|+++|+.. ...|+.+..+.+.. +|.|+-...++++|..+++.. |.|+
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefvq--kylgegprmvrdvfrlakena-psii 252 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFVQ--KYLGEGPRMVRDVFRLAKENA-PSII 252 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHHH--HHhccCcHHHHHHHHHHhccC-CcEE
Confidence 3577889999999999999999999876 55699999888876 788888889999999888765 8899
Q ss_pred EEcchhhhhhCC---CCCChhhHHHhHhhhhh-------cCcEEEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCC
Q 046258 277 FIDEIHLVLGAG---RTEGSMDAANLFKPMLA-------RGQLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPS 343 (900)
Q Consensus 277 ~iDEi~~l~~~~---~~~~~~~~~~~L~~~l~-------~g~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~ 343 (900)
|||||+.+...+ |++.+.++...|..++. .-++.||.+||+++. +||+|.| |++. |+++.|+
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt-----ldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT-----LDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc-----cCHhhcCCccccccccCCCCc
Confidence 999999998643 44667777777777764 347999999999885 8999999 8875 9999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 046258 344 VPDTVSILRGLKEKYE 359 (900)
Q Consensus 344 ~~e~~~ilr~l~~~~~ 359 (900)
..++.-++..+..+..
T Consensus 328 rrqkrlvf~titskm~ 343 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMN 343 (408)
T ss_pred hhhhhhhHHhhhhccc
Confidence 8888878888777643
No 115
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=1.2e-14 Score=160.25 Aligned_cols=200 Identities=18% Similarity=0.239 Sum_probs=142.1
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 630 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 630 (900)
++++.....++|++..++.+...+..++. +..|..+++|+||||||||++|+++|+.+.. .+..++...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~----~~~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKK----RGEALDHVLLYGPPGLGKTTLANIIANEMGV---NIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHh----cCCCCCcEEEECCCCccHHHHHHHHHHHhCC---CeEEEecccccC-
Confidence 45566678899999999988888766532 1344458999999999999999999999854 444444332211
Q ss_pred cccccccCCCCCCcccccccchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeee---cC-C-Cc--eeecCCe
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT---DG-Q-GR--TVDFRNT 702 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~---d~-~-g~--~~~~~~~ 702 (900)
.+.+...+.. ..++|||||||+.+++..++.|+..+++..+. +. . .. ......+
T Consensus 90 ------------------~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 ------------------PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ------------------hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 1122333332 35789999999999999999999999876532 11 1 11 1123456
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
.+|++||. ...++++|.+||+..+.|.+|+.+++.+|+...+.. .
T Consensus 152 ~li~at~~--------------------------~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~-- 196 (328)
T PRK00080 152 TLIGATTR--------------------------AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------L-- 196 (328)
T ss_pred eEEeecCC--------------------------cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--
Confidence 77777776 245788999999888999999999999999877662 2
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
.+.++++++++|+..+- +. .|.+.+.+++
T Consensus 197 ~~~~~~~~~~~ia~~~~-G~--pR~a~~~l~~ 225 (328)
T PRK00080 197 GVEIDEEGALEIARRSR-GT--PRIANRLLRR 225 (328)
T ss_pred CCCcCHHHHHHHHHHcC-CC--chHHHHHHHH
Confidence 46899999999997643 33 5666666654
No 116
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.63 E-value=1.3e-15 Score=166.44 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=134.9
Q ss_pred CCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------hcc
Q 046258 181 VIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV--------AGA 250 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~--------~g~ 250 (900)
+||+++.++++++.+.+ ....+|||+|++||||+++|++||....+.+.| |+.+||+.+. +|+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~p-------fv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGP-------LVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCC-------eEEEeCCCCChHHHHHHHhcc
Confidence 58999999999998877 567789999999999999999999988766556 9999998652 233
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEEEEecCH
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRCIGATTL 317 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irvI~att~ 317 (900)
. .|.|++......+.+..+++|+ ||||||+.|....|. .|..+++.+. +|+|++|+.
T Consensus 74 ~-~g~~~ga~~~~~G~~~~a~gGt-L~Ldei~~L~~~~Q~--------~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 E-AGAFTGAQKRHQGRFERADGGT-LFLDELATASLLVQE--------KLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred c-cccccCcccccCCchhhCCCCE-EEeCChHhCCHHHHH--------HHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 2 2333333222333455667677 999999999876665 8888886543 699999976
Q ss_pred HHHHHHh--hccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhcccC----cccChhHHHHHHHHhhhhccCCCC
Q 046258 318 EEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHHG----VRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 318 ~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~~----v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
+...... ...+.|..||..+.+..|+..+|.+-+ +.+..++...++ ..++++++..+..+. +
T Consensus 144 ~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~--------W 215 (329)
T TIGR02974 144 DLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH--------W 215 (329)
T ss_pred hHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC--------C
Confidence 5422111 123556778888888889988887744 444444433222 358899998888876 6
Q ss_pred hhhHHHHHH
Q 046258 388 PDKAIDLVD 396 (900)
Q Consensus 388 p~~a~~Lld 396 (900)
|.+...|-.
T Consensus 216 PGNvrEL~n 224 (329)
T TIGR02974 216 PGNVRELKN 224 (329)
T ss_pred CchHHHHHH
Confidence 666655543
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.4e-15 Score=168.65 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=144.3
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCc----eeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENL----LVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~----~i~i-~~~ 625 (900)
++++...+.++||+..++.+.+++... +...++||+||+|||||++|+.+|+.+++...+ +-.+ +|-
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 466777889999999999888887543 222379999999999999999999998753222 1111 111
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++-++-+ .+..|.+..+.+.+.+.. ..+.|++|||+|.++...++.|++.|++ ..
T Consensus 78 ~i~~~~~~Dv~eida--as~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp 144 (491)
T PRK14964 78 SIKNSNHPDVIEIDA--ASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PA 144 (491)
T ss_pred HHhccCCCCEEEEec--ccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CC
Confidence 111111 1111111 122333333334444433 3467999999999999999999999997 33
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+. ...+.+.+.+|| ..+.|.+++.+++...+...+. .
T Consensus 145 ~~v~fIlatte--------------------------~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~-------~ 190 (491)
T PRK14964 145 PHVKFILATTE--------------------------VKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAK-------K 190 (491)
T ss_pred CCeEEEEEeCC--------------------------hHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHH-------H
Confidence 56788888864 345788999999 9999999999999888887776 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.| +.+++++++.|++.+- + +.|.+.+.+++.+
T Consensus 191 Eg--i~i~~eAL~lIa~~s~-G--slR~alslLdqli 222 (491)
T PRK14964 191 EN--IEHDEESLKLIAENSS-G--SMRNALFLLEQAA 222 (491)
T ss_pred cC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHHHH
Confidence 33 5899999999997642 3 4787777776654
No 118
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.6e-15 Score=150.29 Aligned_cols=163 Identities=25% Similarity=0.379 Sum_probs=132.9
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+..++-|..++|.++.+++.- ..+..+|||||||||||.+|+++|.+. +..|+.+--
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 445678888999999887752 356789999999999999999999887 888999988
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhh-------hcCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPML-------ARGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~g~irvI~ 313 (900)
+.+.. +|.|+-...++.+|..++. ..-||+|+|||+.+-+++-. +|+.++...++.++ ++|++.|+.
T Consensus 245 selvq--kyvgegarmvrelf~mart-kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELVQ--KYVGEGARMVRELFEMART-KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHHH--HHhhhhHHHHHHHHHHhcc-cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 88876 7889888889999987664 44899999999999876533 45666666555554 589999999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHH
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~ 357 (900)
+||++.. +||+|.| |++. +++..|+.+.|..|++.....
T Consensus 322 atnrpdt-----ldpallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 322 ATNRPDT-----LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred ecCCCCC-----cCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 9998875 8999999 8875 999999999998888755443
No 119
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.63 E-value=7.6e-15 Score=172.26 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=90.2
Q ss_pred HHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCc------e----eecCCeEEEEccCCCcHHHhcccCCcc
Q 046258 654 EAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGR------T----VDFRNTVIIMTSNLGAEHLLSGMMGKV 723 (900)
Q Consensus 654 ~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~------~----~~~~~~~iI~tsn~~~~~~~~~~~~~~ 723 (900)
+.+.++.+++|||||++.+++..|..|+++|+++++....+. . .-..++++|+++|...
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~----------- 279 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD----------- 279 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH-----------
Confidence 345567789999999999999999999999999987653321 1 1123788999998631
Q ss_pred chHHHHHHHHHHHHhcccHHHHhccc---ceeecCC---CCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHc
Q 046258 724 TMQVARDQVLQEVRKHFRPELLNRLD---EIVVFDP---LSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~ll~R~~---~~i~f~p---l~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
...++|+|++||+ ..+.|.+ .+.+...++++ ++. ++++..|....++++++..|+++
T Consensus 280 -------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-~i~---~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 280 -------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-FVA---QEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred -------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-HHH---HHHHHhCCCCcCCHHHHHHHHHH
Confidence 3458999999998 5566654 45566555544 332 23334554568999999999864
Q ss_pred CCCCC--------CCchHHHHHHHHH
Q 046258 798 SYDPI--------YGARPIRRWLEKK 815 (900)
Q Consensus 798 ~~~~~--------~g~R~L~~~i~~~ 815 (900)
. .+. ...|.|.++++.+
T Consensus 343 ~-~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 343 A-QRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred H-HHHHhcccccCCCHHHHHHHHHHH
Confidence 2 111 1257777777544
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=1.9e-13 Score=165.67 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=119.9
Q ss_pred CCCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-
Q 046258 179 DPVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~- 248 (900)
..++|++..++.+...+.+. ...++||+||||||||.+|++||+.+ +..++.+||+....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~ 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEK 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhc
Confidence 35899999999998887641 12347999999999999999999988 55689999887532
Q ss_pred -------c--ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-----------
Q 046258 249 -------G--AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ----------- 308 (900)
Q Consensus 249 -------g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------- 308 (900)
| ..|.|.-+. ..+...+.. .+..||||||++.+.+ ++.+.|++++++|.
T Consensus 524 ~~~~~lig~~~gyvg~~~~--~~l~~~~~~-~p~~VvllDEieka~~--------~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 524 HTVSRLIGAPPGYVGFEQG--GLLTEAVRK-HPHCVLLLDEIEKAHP--------DIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred ccHHHHhcCCCCCcccchh--hHHHHHHHh-CCCeEEEEechhhcCH--------HHHHHHHHhhccCeeecCCCcccCC
Confidence 1 112331111 112233333 3467899999987743 56679999998663
Q ss_pred --EEEEEecCHHH--HH----------------HH--hhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhc---cc
Q 046258 309 --LRCIGATTLEE--YR----------------KY--VEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEG---HH 362 (900)
Q Consensus 309 --irvI~att~~~--~~----------------~~--~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~---~~ 362 (900)
..+|.++|... .. .. ....|.|..|++. |.+...+.++...|++....++.. ..
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 34677665421 00 00 0136788999975 666677888999888766654322 22
Q ss_pred --CcccChhHHHHHHHHh
Q 046258 363 --GVRIQDRALVVAAQLS 378 (900)
Q Consensus 363 --~v~i~~eal~~l~~~s 378 (900)
.+.++++++..++...
T Consensus 673 ~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKG 690 (731)
T ss_pred CCeEEeCHHHHHHHHHhC
Confidence 3568899999988853
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=4.7e-15 Score=172.26 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=138.0
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~~ 625 (900)
++++...+.++||+.+++.+.+.+... +-| ..+||+||+|||||++|+.+|+.+++.. .++..+ .|.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~-------rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG-------RLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC-------CCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 456677888999999999999888654 222 2479999999999999999999998732 121111 011
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++-.+-+ ....+.+..+.+.+.+.. .++.|+||||+|+++...+|.||+.||+ ..
T Consensus 81 ~i~~g~~~D~ieida--as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp 147 (647)
T PRK07994 81 EIEQGRFVDLIEIDA--ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PP 147 (647)
T ss_pred HHHcCCCCCceeecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CC
Confidence 111110 0011111 111222222333333332 3568999999999999999999999997 34
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+. ...+.+.+++|| ..+.|.+++.+++...+...+..
T Consensus 148 ~~v~FIL~Tt~--------------------------~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~------- 193 (647)
T PRK07994 148 EHVKFLLATTD--------------------------PQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA------- 193 (647)
T ss_pred CCeEEEEecCC--------------------------ccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------
Confidence 57888888775 345788999999 99999999999998888887762
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
.| +.++++++..|+..+- +. .|...++++
T Consensus 194 e~--i~~e~~aL~~Ia~~s~-Gs--~R~Al~lld 222 (647)
T PRK07994 194 EQ--IPFEPRALQLLARAAD-GS--MRDALSLTD 222 (647)
T ss_pred cC--CCCCHHHHHHHHHHcC-CC--HHHHHHHHH
Confidence 23 5788899988886532 22 565555553
No 122
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.62 E-value=5.8e-15 Score=175.16 Aligned_cols=199 Identities=19% Similarity=0.299 Sum_probs=141.0
Q ss_pred cccChhHHHHHhcHHHHHH---HHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 550 TRLGQNEKERLIGLAEAVN---AVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~---~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++++...+.++||++.+. .+.+.+.. ....+++|+||||||||++|+++|+.+. .+|+.+++..
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f~~lna~~ 87 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTR---AHFSSLNAVL 87 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhc---Ccceeehhhh
Confidence 3566667778999998875 34344321 1223799999999999999999999874 3777777653
Q ss_pred cccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 627 YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 627 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
.... .....+ ......+. ...+.+|||||||.+....++.|+..+++|. +++|
T Consensus 88 ~~i~-dir~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI 141 (725)
T PRK13341 88 AGVK-DLRAEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLI 141 (725)
T ss_pred hhhH-HHHHHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEE
Confidence 1100 000000 00111111 1245799999999999999999999998743 4566
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
.+|+..+ ...+.+++++|+ .++.|+||+.+++..|+++.+......++.. .+.
T Consensus 142 ~aTTenp------------------------~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~--~v~ 194 (725)
T PRK13341 142 GATTENP------------------------YFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR--KVD 194 (725)
T ss_pred EecCCCh------------------------HhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc--ccC
Confidence 6555432 234678999998 7899999999999999999988655444333 468
Q ss_pred cCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 786 VTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 786 ~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
++++++++|++++ +++ +|.+.+.++.++
T Consensus 195 I~deaL~~La~~s-~GD--~R~lln~Le~a~ 222 (725)
T PRK13341 195 LEPEAEKHLVDVA-NGD--ARSLLNALELAV 222 (725)
T ss_pred CCHHHHHHHHHhC-CCC--HHHHHHHHHHHH
Confidence 9999999999886 566 999999998765
No 123
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.4e-15 Score=169.44 Aligned_cols=206 Identities=18% Similarity=0.283 Sum_probs=140.0
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~~ 625 (900)
++++...+.++||+.+++.+...+... +....+||+||+|||||++|+.+|+.+++.. .++-.+ .|.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 456777888999999999999888643 2223589999999999999999999997621 121111 111
Q ss_pred ccccccccccccC-CCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecC
Q 046258 626 EYMEQHSVSRLIG-APPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 626 ~~~~~~~~~~l~G-~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
.+.... ...++. ......|.+..+.+.+.+.. ..+.|++|||+|+++...++.|+..|++. ..
T Consensus 81 ~i~~~~-~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-----------p~ 148 (546)
T PRK14957 81 AINNNS-FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-----------PE 148 (546)
T ss_pred HHhcCC-CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-----------CC
Confidence 111100 001100 00122333333334343332 35689999999999999999999999972 25
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
.++||++|+. ...+.+.+++|| .++.|.+++.+++...+...+.. .
T Consensus 149 ~v~fIL~Ttd--------------------------~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------e 194 (546)
T PRK14957 149 YVKFILATTD--------------------------YHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------E 194 (546)
T ss_pred CceEEEEECC--------------------------hhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------c
Confidence 6777776654 344667799999 99999999999998888877762 3
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
| +.+++++++.|+..+ .+. .|.+.+.++..
T Consensus 195 g--i~~e~~Al~~Ia~~s-~Gd--lR~alnlLek~ 224 (546)
T PRK14957 195 N--INSDEQSLEYIAYHA-KGS--LRDALSLLDQA 224 (546)
T ss_pred C--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHH
Confidence 3 578999999999764 233 77777776643
No 124
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=168.53 Aligned_cols=206 Identities=18% Similarity=0.264 Sum_probs=142.2
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-cc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DM 624 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 624 (900)
.++++...+.++||+.+++.+.+.+... +....+||+||+|||||++|+.+|+.+++... ++-.+ +|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 4677788899999999999999988643 22224799999999999999999999986321 22111 12
Q ss_pred cccccc----cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCce
Q 046258 625 SEYMEQ----HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 625 ~~~~~~----~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
-.+... .++-.+-+. ...|.+..+.+.+.+.. ..+.|++|||+|.++...+|.||..|++
T Consensus 77 ~~i~~~~~~~~dvieidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE---------- 144 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE---------- 144 (584)
T ss_pred HHhhcccCCCceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc----------
Confidence 221110 011111111 11222222333333332 4578999999999999999999999997
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
...+++||++|+. ...+.+.+.+|+ ..+.|.+++.+++.+.+...+.
T Consensus 145 -pp~~~~fIL~tte--------------------------~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~----- 191 (584)
T PRK14952 145 -PPEHLIFIFATTE--------------------------PEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICE----- 191 (584)
T ss_pred -CCCCeEEEEEeCC--------------------------hHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHH-----
Confidence 3457888888865 245788999999 8999999999999888877776
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
..| +.++++++.+|+..+- .+.|...+.++..
T Consensus 192 --~eg--i~i~~~al~~Ia~~s~---GdlR~aln~Ldql 223 (584)
T PRK14952 192 --QEG--VVVDDAVYPLVIRAGG---GSPRDTLSVLDQL 223 (584)
T ss_pred --HcC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 333 5789999999887543 2366666666553
No 125
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.62 E-value=8e-15 Score=163.96 Aligned_cols=198 Identities=24% Similarity=0.360 Sum_probs=140.5
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
.++++.|.+.+++++.+.+.. ..+.++||+||||||||++|+++|..+ +..|+.+.+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecch
Confidence 345689999999999887642 235569999999999999999999987 556888877
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhh---h----cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPML---A----RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l---~----~g~irvI~ 313 (900)
+.+.. .+.|+....++.++..+.... ++||||||+|.+...... +++......+..++ . .+.+++|+
T Consensus 190 ~~l~~--~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 190 SELVR--KYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred HHHHH--HhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 77654 467777777888887766544 788999999999765432 22333333333333 2 45799999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+... .++++.+ ||+. |.++.|+..+|.+|++.+........ +..+..++..+.+| .+++
T Consensus 267 ttn~~~~-----ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-----~~~~~~la~~t~g~-----sg~d 331 (364)
T TIGR01242 267 ATNRPDI-----LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-----DVDLEAIAKMTEGA-----SGAD 331 (364)
T ss_pred ecCChhh-----CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-----cCCHHHHHHHcCCC-----CHHH
Confidence 9987764 7899987 8875 88999999999999987665422111 12345566666554 3446
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
...++.+|+...
T Consensus 332 l~~l~~~A~~~a 343 (364)
T TIGR01242 332 LKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHH
Confidence 667777766544
No 126
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.8e-15 Score=170.70 Aligned_cols=204 Identities=17% Similarity=0.241 Sum_probs=138.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---------ceeE
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---------LLVR 621 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---------~~i~ 621 (900)
++++...+.++||+..++.+.+.+... +-| ..+||+||+|||||++|+.+|+.+++... ++-.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~-------rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ-------RLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-------CCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 456777888999999999999988654 223 25799999999999999999999986321 1111
Q ss_pred e-ccccccccc--ccccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC
Q 046258 622 I-DMSEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 622 i-~~~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
+ +|..+.... ++-.+-+ ....|.+..+.+.+.+... .+.|++|||+|+++...+|.|++.|++
T Consensus 81 C~~C~~i~~g~h~D~~elda--as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-------- 150 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDA--ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-------- 150 (618)
T ss_pred cHHHHHHHcCCCCceeecCc--ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc--------
Confidence 1 122221111 0001111 1112222222233333332 468999999999999999999999997
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
...+++||++|+.. ..+.+.+++|| .++.|.+++.+++...+...+.
T Consensus 151 ---PP~~~~fIL~Ttd~--------------------------~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~--- 197 (618)
T PRK14951 151 ---PPEYLKFVLATTDP--------------------------QKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLA--- 197 (618)
T ss_pred ---CCCCeEEEEEECCc--------------------------hhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHH---
Confidence 23567788877642 34667899999 9999999999999888887776
Q ss_pred HHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
..| +.++++++++|+..+- + +.|.+.+++++
T Consensus 198 ----~eg--i~ie~~AL~~La~~s~-G--slR~al~lLdq 228 (618)
T PRK14951 198 ----AEN--VPAEPQALRLLARAAR-G--SMRDALSLTDQ 228 (618)
T ss_pred ----HcC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHH
Confidence 333 5789999999987532 3 37777776654
No 127
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.3e-15 Score=163.39 Aligned_cols=195 Identities=19% Similarity=0.207 Sum_probs=142.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.|...+......| +||+||+|||||++|+.+|+.+.....+.. .....++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 467889999999999999888766555 799999999999999999999854321100 00112444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| ...++.+...+.. .+...|+||||+|.|.. ++.|.|+..++. +.+++|.+|
T Consensus 95 Idaas~------~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 95 IDAASN------RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------QSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred echhhc------cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------HHHHHHHHHhhcCCCceEEEeec
Confidence 443211 11 1223444443332 23456899999999954 356688888886 678888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
|... .+.+.+++|++.+.+..++..+....++.++.. .++.++++++..++..+++. +.+|..++
T Consensus 159 te~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd------~RdAL~lL 223 (484)
T PRK14956 159 TEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS------VRDMLSFM 223 (484)
T ss_pred CChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh------HHHHHHHH
Confidence 7643 367999999999999888888888888877765 57889999999999999666 44899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.+.+.
T Consensus 224 eq~i~~ 229 (484)
T PRK14956 224 EQAIVF 229 (484)
T ss_pred HHHHHh
Confidence 987753
No 128
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.4e-15 Score=163.21 Aligned_cols=207 Identities=19% Similarity=0.245 Sum_probs=137.9
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeE-eccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVR-IDMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~-i~~~ 625 (900)
++++...+.++||+.+++.+.+++... +....++|+||+|||||++|+++|+.+++.. .|+.. ..|.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 456677788999999999998888543 2223579999999999999999999997522 11110 1122
Q ss_pred ccccccccccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 626 EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 626 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
++.......-+...+....+.+.-..+.+.+... .+.|++|||+|+++...++.|++.+++ ...+
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~ 149 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQH 149 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCC
Confidence 2211110000000001111111112222333222 357999999999999999999999997 2346
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
+.||++|+. ...+.+.+.+|+ ..+.|.|++.+++.+++...+. ..|
T Consensus 150 ~~fIl~t~~--------------------------~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~-------~~g 195 (363)
T PRK14961 150 IKFILATTD--------------------------VEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILI-------KES 195 (363)
T ss_pred eEEEEEcCC--------------------------hHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHH-------HcC
Confidence 778887764 234778999999 8999999999999988887776 233
Q ss_pred CccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 782 VALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
+.+++++++.|+..+ .+ +.|...+.++..
T Consensus 196 --~~i~~~al~~ia~~s-~G--~~R~al~~l~~~ 224 (363)
T PRK14961 196 --IDTDEYALKLIAYHA-HG--SMRDALNLLEHA 224 (363)
T ss_pred --CCCCHHHHHHHHHHc-CC--CHHHHHHHHHHH
Confidence 578999999999764 23 377777777654
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=5.5e-15 Score=170.44 Aligned_cols=206 Identities=18% Similarity=0.244 Sum_probs=142.5
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc----
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE---- 626 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~---- 626 (900)
++++.....++||+.+++.+.+.+... +....+||+||+|||||++|+.+|+.+++... .....|+.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sC 79 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSC 79 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHH
Confidence 466777889999999999999988643 22336899999999999999999999987422 11111221
Q ss_pred --ccccc--ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 627 --YMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 627 --~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
+.... ++-.+-+ ....|.+..+.+.+.+. ...+.|+||||+++++...++.|++.|++ .
T Consensus 80 r~i~~g~~~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------P 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------P 146 (709)
T ss_pred HHHhccCccceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------C
Confidence 11110 0011111 11112111122222222 13468999999999999999999999996 2
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||++||. ...+.+.+++|| ..+.|.+++.+++..++...+.
T Consensus 147 p~~v~fILaTtd--------------------------~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~------- 192 (709)
T PRK08691 147 PEHVKFILATTD--------------------------PHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLD------- 192 (709)
T ss_pred CCCcEEEEEeCC--------------------------ccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHH-------
Confidence 356788888875 345678899999 8899999999999998887776
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
..| +.++++++..|++.+ .++ .|.+.+.+++.+.
T Consensus 193 kEg--i~id~eAL~~Ia~~A-~Gs--lRdAlnLLDqaia 226 (709)
T PRK08691 193 SEK--IAYEPPALQLLGRAA-AGS--MRDALSLLDQAIA 226 (709)
T ss_pred HcC--CCcCHHHHHHHHHHh-CCC--HHHHHHHHHHHHH
Confidence 333 578999999999775 333 8888888866543
No 130
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.2e-13 Score=156.26 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=120.7
Q ss_pred CCCCCchHHHHHHHHHHcc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-
Q 046258 179 DPVIGRDEEIRRVVRILSR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~- 248 (900)
..++|++.++..+.+.+.+ ++..+.||.||+|||||.+|++||..+..+... ++.+|||....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~a-------liR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQA-------LIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcc-------ceeechHHHHHH
Confidence 3589999999999998875 222357899999999999999999999776554 99999998743
Q ss_pred --------------cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc------
Q 046258 249 --------------GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ------ 308 (900)
Q Consensus 249 --------------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~------ 308 (900)
|+..-|.+++.+ ..++.+|+++|||+. ...++.|+|+++|++|.
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaV--------Rr~PySViLlDEIEK--------AHpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAV--------RRKPYSVILLDEIEK--------AHPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhh--------hcCCCeEEEechhhh--------cCHHHHHHHHHHhcCCeeecCCC
Confidence 222223333333 235578999999944 56789999999998764
Q ss_pred -------EEEEEecCHHH--HH---------------HHh------hccHHHHcccce-eeecCCChHHHHHHHHHHHHH
Q 046258 309 -------LRCIGATTLEE--YR---------------KYV------EKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 309 -------irvI~att~~~--~~---------------~~~------~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~ 357 (900)
..+|.|+|-.. .. ..+ .-.|.|..|++. |.|...+.+....|+.....+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 34555554210 00 000 124788889985 666666777777776554443
Q ss_pred ----Hhc-ccCcccChhHHHHHHHHh
Q 046258 358 ----YEG-HHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 358 ----~~~-~~~v~i~~eal~~l~~~s 378 (900)
+.. ...+.+++++...++...
T Consensus 708 l~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 708 LAKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HHHHHHhCCceEEECHHHHHHHHHhc
Confidence 332 333558888888877654
No 131
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=5.9e-15 Score=175.10 Aligned_cols=193 Identities=23% Similarity=0.325 Sum_probs=140.3
Q ss_pred CCCCCCCCchHHHH---HHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 176 GKLDPVIGRDEEIR---RVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i~---~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
.+|++++|++..+. .+...+......|++|+||||||||++|+++|+.+ +.+|+.+|+.. .+.+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~~--~~i~- 91 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAVL--AGVK- 91 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhhh--hhhH-
Confidence 56778999998874 56667777777799999999999999999999887 45577777642 1111
Q ss_pred cchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHc
Q 046258 253 RGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFER 332 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~ 332 (900)
+....+..........+.+.+|||||+|.+....+ +.|++.++++.+.+|++|+.+.+. ..++++.+
T Consensus 92 --dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ--------daLL~~lE~g~IiLI~aTTenp~~---~l~~aL~S 158 (725)
T PRK13341 92 --DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ--------DALLPWVENGTITLIGATTENPYF---EVNKALVS 158 (725)
T ss_pred --HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH--------HHHHHHhcCceEEEEEecCCChHh---hhhhHhhc
Confidence 11122222212222223467899999999865443 378899999999999999876653 35789999
Q ss_pred ccceeeecCCChHHHHHHHHHHHHHHhc---ccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 333 RFQQVYVAEPSVPDTVSILRGLKEKYEG---HHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 333 Rf~~i~i~~P~~~e~~~ilr~l~~~~~~---~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
|+..+.++.++.++...+++.....+.. ..++.++++++..++..+.+.+. .+..+++.++.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R------~lln~Le~a~~ 223 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR------SLLNALELAVE 223 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Confidence 9988889888999999999887775433 23577999999999998754433 66677776653
No 132
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.1e-14 Score=174.88 Aligned_cols=207 Identities=19% Similarity=0.242 Sum_probs=142.7
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-cc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DM 624 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 624 (900)
.+++...+..|+||+.+++.|.+.+... +....+||+||+|||||++|+.||+.|++... +|-.+ +|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5677788899999999999999888653 22224899999999999999999999986322 11111 11
Q ss_pred cccccc----cccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCce
Q 046258 625 SEYMEQ----HSVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 625 ~~~~~~----~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
-.+... .++..+-+. ...|.+..+.+.+.+. ...+.|+||||+|+++...+|.||++|++
T Consensus 79 ~~~~~g~~~~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---------- 146 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---------- 146 (824)
T ss_pred HHHHcCCCCCCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC----------
Confidence 111100 111112111 1112222222322222 24678999999999999999999999997
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
.-.+++|||+|+. ...+.+.+.+|| .++.|.+++.+++.+++...+.
T Consensus 147 -pP~~~~fIl~tt~--------------------------~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~----- 193 (824)
T PRK07764 147 -PPEHLKFIFATTE--------------------------PDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICA----- 193 (824)
T ss_pred -CCCCeEEEEEeCC--------------------------hhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHH-----
Confidence 3357888888764 234678899999 9999999999999998887776
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++.+|++.+- + ..|.+.+.+++++
T Consensus 194 --~EG--v~id~eal~lLa~~sg-G--dlR~Al~eLEKLi 226 (824)
T PRK07764 194 --QEG--VPVEPGVLPLVIRAGG-G--SVRDSLSVLDQLL 226 (824)
T ss_pred --HcC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHHHH
Confidence 344 5789999999987643 2 3677777776644
No 133
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.60 E-value=1.4e-14 Score=178.16 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=127.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc--------------------------
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK-------------------------- 251 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~-------------------------- 251 (900)
..+..|||+||||||||.+|+++|... +++|+.++++.++.+..
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456689999999999999999999987 66699999999875320
Q ss_pred -------------ccchHHH--HHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-------cCcE
Q 046258 252 -------------YRGEFEE--RLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-------RGQL 309 (900)
Q Consensus 252 -------------~~g~~~~--~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~g~i 309 (900)
+.+.-++ +++.+|+.++... ||||||||||.+...... .-..+.|+..|. ...+
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S-PCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMS-PCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC-CeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCCCCCE
Confidence 0011122 3778899888766 999999999999765211 111345555553 2368
Q ss_pred EEEEecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChh--HHHHHHHHhhhhccC
Q 046258 310 RCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDR--ALVVAAQLSARYITG 384 (900)
Q Consensus 310 rvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~e--al~~l~~~s~~~~~~ 384 (900)
.|||||++++. +||||.| ||+. |.+..|+..+|.+++..+... .++.+.++ .+..++..+.+|-
T Consensus 1774 IVIAATNRPD~-----LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfS-- 1842 (2281)
T CHL00206 1774 LVIASTHIPQK-----VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSN-- 1842 (2281)
T ss_pred EEEEeCCCccc-----CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCC--
Confidence 99999998875 8999999 9986 889999988999888765422 12222221 2566777776664
Q ss_pred CCChhhHHHHHHHHHHHhhh
Q 046258 385 RHLPDKAIDLVDEACANVRV 404 (900)
Q Consensus 385 ~~~p~~a~~Lld~a~a~~~~ 404 (900)
.++...|+.+|+.....
T Consensus 1843 ---GADLanLvNEAaliAir 1859 (2281)
T CHL00206 1843 ---ARDLVALTNEALSISIT 1859 (2281)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 44888889998865443
No 134
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=146.94 Aligned_cols=223 Identities=24% Similarity=0.360 Sum_probs=149.2
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEeccc--cc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMS--EY 627 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~--~~ 627 (900)
+..+....+.||.-+.+.|.++++.....-. |.+|. ++-|.|+|||||..+++.||+.+++.+. ++|..=.+ .|
T Consensus 76 Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 76 LEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHF 153 (344)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccC
Confidence 4566778899999999999999998876644 88897 6779999999999999999999987432 22211111 11
Q ss_pred ccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEc
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMT 707 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~t 707 (900)
.....+.. |.. .-...+.+-++.++.++++|||+||+|+.+++.|-..||.....+ .++|.++|||+-
T Consensus 154 P~~~~ie~-------Yk~-eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~----gv~frkaIFIfL 221 (344)
T KOG2170|consen 154 PHASKIED-------YKE-ELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVS----GVDFRKAIFIFL 221 (344)
T ss_pred CChHHHHH-------HHH-HHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccc----cccccceEEEEE
Confidence 11100000 000 001345556667899999999999999999999999999533222 358999999999
Q ss_pred cCCCcHHHhccc----CC-----ccchHHHHHHHHHHHHh----cc-cHHHH--hcccceeecCCCCHHHHHHHHHHHHH
Q 046258 708 SNLGAEHLLSGM----MG-----KVTMQVARDQVLQEVRK----HF-RPELL--NRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 708 sn~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~----~~-~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
||.+.+.+.+.. .. +.........++....+ .+ ...+. +++|.+|+|.|++..++..+++..+.
T Consensus 222 SN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~ 301 (344)
T KOG2170|consen 222 SNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELR 301 (344)
T ss_pred cCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHH
Confidence 999998776311 01 11122222233322211 11 22222 57899999999999999999998887
Q ss_pred HHHHHHHhcCCccccCHHHHHHHHHc
Q 046258 772 DVAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
.+| +..+.+.++.+++.
T Consensus 302 -------~rg--~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 302 -------KRG--LAPDQDFVERVANS 318 (344)
T ss_pred -------hcc--cccchHHHHHHHHh
Confidence 344 45666666666543
No 135
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-15 Score=159.75 Aligned_cols=171 Identities=20% Similarity=0.308 Sum_probs=124.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
.+||+||||||||.|||++|-.- +.||+....++|.+. +.| +|...-+.|+.+.+++..||||||||
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdEm-----~VG-----vGArRVRdLF~aAk~~APcIIFIDEi 405 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDEM-----FVG-----VGARRVRDLFAAAKARAPCIIFIDEI 405 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhhh-----hhc-----ccHHHHHHHHHHHHhcCCeEEEEech
Confidence 69999999999999999999766 569999999988653 222 23333356777777777799999999
Q ss_pred cccCH-----------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHh
Q 046258 670 EKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRK 738 (900)
Q Consensus 670 dk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (900)
|.... ..+|.||--||.-. ....+|||.+||.+ +
T Consensus 406 DavG~kR~~~~~~y~kqTlNQLLvEmDGF~---------qNeGiIvigATNfp--------------------------e 450 (752)
T KOG0734|consen 406 DAVGGKRNPSDQHYAKQTLNQLLVEMDGFK---------QNEGIIVIGATNFP--------------------------E 450 (752)
T ss_pred hhhcccCCccHHHHHHHHHHHHHHHhcCcC---------cCCceEEEeccCCh--------------------------h
Confidence 97632 24577777777311 11357899999984 4
Q ss_pred cccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 739 HFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 739 ~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.++++|. +|||..|.++.++-.-..+|++.++. .+.+++++--.++..+.++- ...+|.+++..+.
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~-----------ki~~~~~VD~~iiARGT~GF-sGAdLaNlVNqAA 518 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS-----------KIPLDEDVDPKIIARGTPGF-SGADLANLVNQAA 518 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh-----------cCCcccCCCHhHhccCCCCC-chHHHHHHHHHHH
Confidence 4677887 69999999999999999999999998 34445444334455666554 4458999887766
Q ss_pred HHHH
Q 046258 817 VTEL 820 (900)
Q Consensus 817 ~~~l 820 (900)
..+.
T Consensus 519 lkAa 522 (752)
T KOG0734|consen 519 LKAA 522 (752)
T ss_pred HHHH
Confidence 5543
No 136
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=1.2e-14 Score=159.17 Aligned_cols=181 Identities=24% Similarity=0.287 Sum_probs=127.1
Q ss_pred CCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
+|++++|++..++++..++.. ...++++|+||||||||++|+.+|+.+ +..+..++.+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~~--- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALEK--- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhcC---
Confidence 467799999999999887762 345679999999999999999999987 34455544332221
Q ss_pred ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------------cEEE
Q 046258 252 YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------------QLRC 311 (900)
Q Consensus 252 ~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------------~irv 311 (900)
.+.+. . .+.....+.||||||+|.+.+..+ +.|..++++. .+.+
T Consensus 69 -~~~l~----~---~l~~~~~~~vl~iDEi~~l~~~~~--------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGDLA----A---ILTNLEEGDVLFIDEIHRLSPAVE--------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chhHH----H---HHHhcccCCEEEEehHhhhCHHHH--------HHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12222 2 222233467899999999875422 2444444322 2677
Q ss_pred EEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
|++|++... .++++++||.. +.+..|+.++..++++..... .++.++++++..++..+.++ |..
T Consensus 133 i~~t~~~~~-----l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~------pR~ 197 (305)
T TIGR00635 133 VGATTRAGM-----LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT------PRI 197 (305)
T ss_pred EEecCCccc-----cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC------cch
Confidence 888876642 67889999965 678888999999999876664 46789999999999988554 456
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
+..+++.+...
T Consensus 198 ~~~ll~~~~~~ 208 (305)
T TIGR00635 198 ANRLLRRVRDF 208 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777765533
No 137
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.6e-14 Score=164.66 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=143.8
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--------ce-e
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--------LL-V 620 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--------~~-i 620 (900)
.++++.....++||+.+++.+..++... +....+||+||+|||||++|+.+|+.+++... ++ .
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~~--------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILND--------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 3567777889999999999988887653 22247999999999999999999999976321 11 1
Q ss_pred Eeccccccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC
Q 046258 621 RIDMSEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 621 ~i~~~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
.-+|..+.+.. ++-.+-+. ...|.+.-+.+.+.... ..+.|++|||++.++...++.|+..|++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-------- 154 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-------- 154 (507)
T ss_pred ChHHHHHhcCCCCcEEEeecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh--------
Confidence 11222222111 11111111 11222222223333332 3468999999999999999999999996
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
...+++||++|+. ...+.+.+.+|| ..+.|.+++.+++..++...+.
T Consensus 155 ---pp~~~vfI~aTte--------------------------~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~--- 201 (507)
T PRK06645 155 ---PPPHIIFIFATTE--------------------------VQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITK--- 201 (507)
T ss_pred ---cCCCEEEEEEeCC--------------------------hHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHH---
Confidence 2356788887764 345788999999 8899999999999999988887
Q ss_pred HHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.+++++++.|+..+ .+ +.|.+.+.+++++
T Consensus 202 ----~eg--i~ie~eAL~~Ia~~s-~G--slR~al~~Ldkai 234 (507)
T PRK06645 202 ----QEN--LKTDIEALRIIAYKS-EG--SARDAVSILDQAA 234 (507)
T ss_pred ----HcC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHHHH
Confidence 233 578999999998753 23 3788877776654
No 138
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=3.9e-14 Score=155.18 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=135.7
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
...++||++.++.+...+...... ..+..+++|+||||||||++|+++|+.+.. .+..++.+....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~~~~~~~~~~~------- 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEMGV---NLKITSGPALEK------- 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeccchhcC-------
Confidence 457899999999988888655321 222347999999999999999999998854 444443322110
Q ss_pred cCCCCCCcccccccchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeee---cC-C---CceeecCCeEEEEcc
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT---DG-Q---GRTVDFRNTVIIMTS 708 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~---d~-~---g~~~~~~~~~iI~ts 708 (900)
.+.+...+.. ..+.+||||||+.+++..++.|+.++++.... +. . ........+.+|.+|
T Consensus 69 ------------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 69 ------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred ------------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 1123333332 35689999999999999999999999876532 11 0 111233446777777
Q ss_pred CCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Q 046258 709 NLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTD 788 (900)
Q Consensus 709 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 788 (900)
|.. ..+.+++.+||..++.|.||+.+++.+++...+.. . .+.+++
T Consensus 137 ~~~--------------------------~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~--~~~~~~ 181 (305)
T TIGR00635 137 TRA--------------------------GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------L--NVEIEP 181 (305)
T ss_pred CCc--------------------------cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------h--CCCcCH
Confidence 763 34788999999888999999999999999876651 2 458999
Q ss_pred HHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 789 AALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 789 ~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
+++++|++.+. +. .|.+.++++.
T Consensus 182 ~al~~ia~~~~-G~--pR~~~~ll~~ 204 (305)
T TIGR00635 182 EAALEIARRSR-GT--PRIANRLLRR 204 (305)
T ss_pred HHHHHHHHHhC-CC--cchHHHHHHH
Confidence 99999998633 33 5666666654
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=1.2e-12 Score=160.55 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=117.6
Q ss_pred CCCCCchHHHHHHHHHHcc-------CC--CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-
Q 046258 179 DPVIGRDEEIRRVVRILSR-------RT--KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~-------~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~- 248 (900)
..++|++.+++.+...+.+ +. ..++||+||+|||||++|+.||+.+..... .++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~-------~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED-------AMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc-------ceEEEEchhcccc
Confidence 4589999999999887763 11 124789999999999999999999865433 388999876532
Q ss_pred -------c--ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-----------
Q 046258 249 -------G--AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ----------- 308 (900)
Q Consensus 249 -------g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------- 308 (900)
| ..|.|.-+. ..+...+.. .+..|++|||++.+. .++.+.|+++++.|.
T Consensus 582 ~~~~~l~g~~~gyvg~~~~--~~l~~~~~~-~p~~VvllDeieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEG--GQLTEAVRK-KPYTVVLFDEIEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCcc--chHHHHHHh-CCCeEEEECChhhCC--------HHHHHHHHHHhccCceecCCCcEEec
Confidence 1 112221110 112233333 336789999998764 456779999998653
Q ss_pred --EEEEEecCHHHH-----------------------HHH---h------hccHHHHcccce-eeecCCChHHHHHHHHH
Q 046258 309 --LRCIGATTLEEY-----------------------RKY---V------EKDAAFERRFQQ-VYVAEPSVPDTVSILRG 353 (900)
Q Consensus 309 --irvI~att~~~~-----------------------~~~---~------~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~ 353 (900)
..+|.++|...- ... + .-.|.|.+|++. |.+...+.++...|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 456666653210 000 0 024788999954 66777788888888765
Q ss_pred HHHHHh---cccC--cccChhHHHHHHHH
Q 046258 354 LKEKYE---GHHG--VRIQDRALVVAAQL 377 (900)
Q Consensus 354 l~~~~~---~~~~--v~i~~eal~~l~~~ 377 (900)
....+. ...+ +.+++++...++..
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence 554332 1223 45889999988885
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.59 E-value=9.8e-15 Score=149.00 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=145.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
.++++++|++..++.|...+.++..+|.|||||||||||+.|+++|+.+.. +.+..+.+.++|.+... |-....+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSder-Gisvvr~ 107 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDER-GISVVRE 107 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccc-cccchhh
Confidence 578889999999999999999988889999999999999999999999955 23445666666655432 2111111
Q ss_pred HHHHHHHHHHHHH-----HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccH
Q 046258 256 FEERLKAVLKEVE-----EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 256 ~~~~l~~~~~~~~-----~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~ 328 (900)
-...+..+..... .+...-|++|||+|.|..+.|. .|++.|++ ...|+|..||+... +.+
T Consensus 108 Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~--------aLrr~mE~~s~~trFiLIcnylsr-----ii~ 174 (346)
T KOG0989|consen 108 KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQA--------ALRRTMEDFSRTTRFILICNYLSR-----IIR 174 (346)
T ss_pred hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHH--------HHHHHHhccccceEEEEEcCChhh-----CCh
Confidence 0011111111110 0122258999999999765554 99999985 57888888887653 678
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
.+.+|++.+.|.....+.....|+.++.+ .++.++++++..++..+.+.+. +|+-.|+.++-
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdLR------~Ait~Lqsls~ 236 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDLR------RAITTLQSLSL 236 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHhhc
Confidence 89999999998777777888888888887 7899999999999999987766 67777766553
No 141
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.59 E-value=5.3e-15 Score=162.01 Aligned_cols=195 Identities=22% Similarity=0.258 Sum_probs=135.0
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------ 248 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------ 248 (900)
.++.++|.++.++++++.+.+ ....+|+|+|++||||+++|++||....+.+.| |+.+||+.+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~p-------fv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGP-------FISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCC-------eEEEeCCCCCHHHHHHH
Confidence 356799999999999998887 567789999999999999999999887655555 99999997631
Q ss_pred --cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEE
Q 046258 249 --GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIG 313 (900)
Q Consensus 249 --g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~ 313 (900)
|+. .|.+.+......+.+..+.+|+ ||||||+.|....|. .|..+++.+ .+|+|+
T Consensus 77 lfg~~-~~~~~g~~~~~~g~l~~a~gGt-L~l~~i~~L~~~~Q~--------~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 146 (326)
T PRK11608 77 LFGHE-AGAFTGAQKRHPGRFERADGGT-LFLDELATAPMLVQE--------KLLRVIEYGELERVGGSQPLQVNVRLVC 146 (326)
T ss_pred Hcccc-ccccCCcccccCCchhccCCCe-EEeCChhhCCHHHHH--------HHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 221 1222221112233445667677 999999999876665 777777643 379999
Q ss_pred ecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhcccC----cccChhHHHHHHHHhhhhcc
Q 046258 314 ATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHHG----VRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 314 att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~~----v~i~~eal~~l~~~s~~~~~ 383 (900)
+|+.+..... -...+.|..||..+.+..|+..+|.+-+ +.+..++...++ ..++++++..+..+.
T Consensus 147 ~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~----- 221 (326)
T PRK11608 147 ATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR----- 221 (326)
T ss_pred eCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC-----
Confidence 9876542211 1123567778888888899988887744 444444433333 347899988888766
Q ss_pred CCCChhhHHHHHH
Q 046258 384 GRHLPDKAIDLVD 396 (900)
Q Consensus 384 ~~~~p~~a~~Lld 396 (900)
+|.+...|-.
T Consensus 222 ---WPGNvrEL~~ 231 (326)
T PRK11608 222 ---WPGNIRELKN 231 (326)
T ss_pred ---CCcHHHHHHH
Confidence 6666655543
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=5.5e-15 Score=165.98 Aligned_cols=208 Identities=20% Similarity=0.318 Sum_probs=155.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEec-cc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRID-MS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i~-~~ 625 (900)
++++...+.++||+..++.+..++...+. ...+||+||-|||||++||.+|+.+++.. .||..+. |-
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri--------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRI--------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcc--------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 35667778899999999999999987632 23599999999999999999999998853 3333221 22
Q ss_pred cccccccc--ccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQHSV--SRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~~~--~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
++.....+ -++=+ ....|-++.+.+.+.+... .+.|++|||++.++...+|+||+.|++ ..
T Consensus 81 ~I~~g~~~DviEiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP 147 (515)
T COG2812 81 EINEGSLIDVIEIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PP 147 (515)
T ss_pred hhhcCCcccchhhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------Cc
Confidence 23222111 11111 2233555555666666543 468999999999999999999999998 67
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+- ...+++..++|| ..+.|..++.+++..-+...+. +
T Consensus 148 ~hV~FIlATTe--------------------------~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~-------~ 193 (515)
T COG2812 148 SHVKFILATTE--------------------------PQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILD-------K 193 (515)
T ss_pred cCeEEEEecCC--------------------------cCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHH-------h
Confidence 89999998876 467999999999 9999999999999888887777 3
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
. .+.++++++..|++.+- .|.|+..+++.+++.-
T Consensus 194 E--~I~~e~~aL~~ia~~a~---Gs~RDalslLDq~i~~ 227 (515)
T COG2812 194 E--GINIEEDALSLIARAAE---GSLRDALSLLDQAIAF 227 (515)
T ss_pred c--CCccCHHHHHHHHHHcC---CChhhHHHHHHHHHHc
Confidence 4 46899999999997643 4578887777665544
No 143
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.59 E-value=2.9e-15 Score=172.30 Aligned_cols=181 Identities=21% Similarity=0.281 Sum_probs=130.0
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL------- 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l------- 246 (900)
..|++++|.++.++++.+.+.+ ....+|||+||+||||+++|++||....+.+.| |+.+||+.+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~p-------fv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFP-------FVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCC-------EEEeccccCChhHHHH
Confidence 4577899999999999998875 567899999999999999999999988666556 999999876
Q ss_pred -hhcccccchHHHHHH-HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEE
Q 046258 247 -VAGAKYRGEFEERLK-AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRC 311 (900)
Q Consensus 247 -~~g~~~~g~~~~~l~-~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irv 311 (900)
++|+. .|.|++..+ ...+.++.+++|+ ||||||+.|+...|. .|.++++++. +|+
T Consensus 282 eLFG~~-~gaftga~~~~~~Gl~e~A~gGT-LfLdeI~~Lp~~~Q~--------~Ll~~L~~~~~~r~g~~~~~~~dvRi 351 (526)
T TIGR02329 282 ELFGYE-EGAFTGARRGGRTGLIEAAHRGT-LFLDEIGEMPLPLQT--------RLLRVLEEREVVRVGGTEPVPVDVRV 351 (526)
T ss_pred HhcCCc-ccccccccccccccchhhcCCce-EEecChHhCCHHHHH--------HHHHHHhcCcEEecCCCceeeecceE
Confidence 33443 344444322 1234455667677 999999999877666 8888887553 489
Q ss_pred EEecCHHHHHHHh--hccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhcccCcccChhHHHH
Q 046258 312 IGATTLEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHHGVRIQDRALVV 373 (900)
Q Consensus 312 I~att~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~~v~i~~eal~~ 373 (900)
|++|+.+...... .....|..|+..+.+..|+..+|.+-+ +.+..++....++.++++++..
T Consensus 352 Iaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 352 VAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred EeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999765432220 112334457888888899998887744 4445554444456678887766
No 144
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.59 E-value=3.4e-14 Score=158.18 Aligned_cols=204 Identities=19% Similarity=0.341 Sum_probs=141.5
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEeccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDMSEY 627 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~ 627 (900)
.++++.....++|++.+++.+...+... ..| +++|+||||||||++|+++++.+.+.. .+++.++++++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP-------NLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC-------CCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 5667777888999999888888776421 223 699999999999999999999997643 46788998876
Q ss_pred ccccccccccCCCCCC---ccc------ccccchhHHHH--------hCCCeEEEEccccccCHHHHHHHHHHhhCCeee
Q 046258 628 MEQHSVSRLIGAPPGY---VGH------EEGGQLTEAVR--------RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT 690 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~---~g~------~~~~~l~~~~~--------~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~ 690 (900)
..... . .++..+.+ .+. .....+...++ ..+..+|+|||++.+++..++.|+..+++.
T Consensus 78 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~--- 152 (337)
T PRK12402 78 FDQGK-K-YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY--- 152 (337)
T ss_pred hhcch-h-hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc---
Confidence 42211 0 11111111 010 00111222211 134579999999999999999999999852
Q ss_pred cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 691 DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 691 d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
..++.||++++.. ..+.+.|.+|+ ..+.|.|++.+++..++...+
T Consensus 153 --------~~~~~~Il~~~~~--------------------------~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 153 --------SRTCRFIIATRQP--------------------------SKLIPPIRSRC-LPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred --------cCCCeEEEEeCCh--------------------------hhCchhhcCCc-eEEEecCCCHHHHHHHHHHHH
Confidence 1346677777642 23567788998 789999999999988888776
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
. ..| +.+++++++.|+.+. +++ .|.+.+.++.
T Consensus 198 ~-------~~~--~~~~~~al~~l~~~~-~gd--lr~l~~~l~~ 229 (337)
T PRK12402 198 E-------AEG--VDYDDDGLELIAYYA-GGD--LRKAILTLQT 229 (337)
T ss_pred H-------HcC--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHH
Confidence 5 344 469999999999875 555 7777766654
No 145
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.4e-14 Score=167.00 Aligned_cols=207 Identities=20% Similarity=0.316 Sum_probs=142.6
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc-
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME- 629 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~- 629 (900)
++++.....++||+.+++.+..++... +....+||+||+|||||++|+.+|+.+.+.......-.|+....
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 456777889999999999999998653 22235899999999999999999999987432111111222110
Q ss_pred -ccccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEE
Q 046258 630 -QHSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVI 704 (900)
Q Consensus 630 -~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~i 704 (900)
......+.+...+..|.+..+.+.+.+.. .++.|++|||+|.+....++.|+..|++ ....++|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tif 151 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIF 151 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEE
Confidence 00001111111222333333445455543 3468999999999999999999999997 3356778
Q ss_pred EEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 046258 705 IMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVAL 784 (900)
Q Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~ 784 (900)
|++|+. ...+.+.+++|| ..+.|.|++.+++..++...+. ..| +
T Consensus 152 ILaTte--------------------------~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~-------keg--I 195 (725)
T PRK07133 152 ILATTE--------------------------VHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILE-------KEN--I 195 (725)
T ss_pred EEEcCC--------------------------hhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHH-------HcC--C
Confidence 887764 345788999999 7999999999999988887666 233 5
Q ss_pred ccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 785 AVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 785 ~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.+++++++.|+..+- + +.|.+.+.+++.
T Consensus 196 ~id~eAl~~LA~lS~-G--slR~AlslLekl 223 (725)
T PRK07133 196 SYEKNALKLIAKLSS-G--SLRDALSIAEQV 223 (725)
T ss_pred CCCHHHHHHHHHHcC-C--CHHHHHHHHHHH
Confidence 788899998886643 2 367666666543
No 146
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.58 E-value=5.6e-15 Score=169.61 Aligned_cols=180 Identities=18% Similarity=0.242 Sum_probs=125.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHH--------HhcCCCCCCCCCcEEEEEechh
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQR--------IVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~--------l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
..+++++|.++.++++.+.+.+ .+..+|||+||+||||+++|++||.. +.+.+.| |+.+||++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~p-------fv~inCaa 288 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHP-------FVAVNCGA 288 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCC-------eEEeeccc
Confidence 3577899999999999998875 66789999999999999999999998 4444444 99999997
Q ss_pred h--------hhcccccchHHHHHH-HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc--------
Q 046258 246 L--------VAGAKYRGEFEERLK-AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------- 308 (900)
Q Consensus 246 l--------~~g~~~~g~~~~~l~-~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------- 308 (900)
+ ++|+. .|.|++..+ ...+.++.+++|+ ||||||+.|....|. .|+++++++.
T Consensus 289 l~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGT-LfLdeI~~Lp~~~Q~--------kLl~~L~e~~~~r~G~~~ 358 (538)
T PRK15424 289 IAESLLEAELFGYE-EGAFTGSRRGGRAGLFEIAHGGT-LFLDEIGEMPLPLQT--------RLLRVLEEKEVTRVGGHQ 358 (538)
T ss_pred CChhhHHHHhcCCc-cccccCccccccCCchhccCCCE-EEEcChHhCCHHHHH--------HHHhhhhcCeEEecCCCc
Confidence 6 34443 344444322 1223455667777 999999999877666 8888887543
Q ss_pred -----EEEEEecCHHHHHHHhh--ccHHHHcccceeeecCCChHHHHHHHHH----HHHHHhcccCcccChhHHH
Q 046258 309 -----LRCIGATTLEEYRKYVE--KDAAFERRFQQVYVAEPSVPDTVSILRG----LKEKYEGHHGVRIQDRALV 372 (900)
Q Consensus 309 -----irvI~att~~~~~~~~~--~d~al~~Rf~~i~i~~P~~~e~~~ilr~----l~~~~~~~~~v~i~~eal~ 372 (900)
+|+|++|+.+......+ -.+.|..|+..+.+..|+..||.+-+.. +..++....+..++++++.
T Consensus 359 ~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 359 PVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred eeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999997654322200 1223445888888999999888775444 4444333344456666653
No 147
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.4e-14 Score=169.27 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=155.2
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-.|+.+-|-+..+.++.+++.- ..++.+|++||||||||..|+++|..+.+++- ...|+.-+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-----kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-----KISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-----ccchhhhc
Confidence 5677888888888888775531 24566999999999999999999998866542 33355555
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh----cCcEEEEEec
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA----RGQLRCIGAT 315 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~----~g~irvI~at 315 (900)
.++.++ +|.|+.+..++.+|.+++... +.|+|+|||+-|.+.+.+ .-...+...|+.+|. +|.+++||||
T Consensus 337 gaD~ls--kwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLS--KWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred Cchhhc--cccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 555554 789999999999999998766 899999999999887644 122344566777775 7999999999
Q ss_pred CHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHH
Q 046258 316 TLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
|+.++ .||+++| ||+. ++++.|+...|..|+......+ .-.++...+..++..+.+|... +..
T Consensus 414 nRpda-----~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~ga-----Dlk 479 (1080)
T KOG0732|consen 414 NRPDA-----IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGGA-----DLK 479 (1080)
T ss_pred CCccc-----cchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccchH-----HHH
Confidence 99886 8999998 8975 8899999999999987655542 3447778888888888888664 555
Q ss_pred HHHHHHH
Q 046258 393 DLVDEAC 399 (900)
Q Consensus 393 ~Lld~a~ 399 (900)
.|+-+|+
T Consensus 480 aLCTeAa 486 (1080)
T KOG0732|consen 480 ALCTEAA 486 (1080)
T ss_pred HHHHHHh
Confidence 5555554
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=1.5e-12 Score=155.48 Aligned_cols=178 Identities=19% Similarity=0.280 Sum_probs=118.5
Q ss_pred CCCCchHHHHHHHHHHcc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh--
Q 046258 180 PVIGRDEEIRRVVRILSR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-- 248 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-- 248 (900)
.++|++.+++.+...+.+ ++..++||+||||||||.+|+.+|+.+ +.+++.+||+....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 489999999999998863 123468999999999999999999998 45599999887532
Q ss_pred ------cc--cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc------------
Q 046258 249 ------GA--KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ------------ 308 (900)
Q Consensus 249 ------g~--~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~------------ 308 (900)
|. .|.|.-.. ..+...+.. .+.+||||||++.+.+ ++.+.|+++|++|.
T Consensus 529 ~~~~LiG~~~gyvg~~~~--g~L~~~v~~-~p~sVlllDEieka~~--------~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQG--GLLTDAVIK-HPHAVLLLDEIEKAHP--------DVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCccccccc--chHHHHHHh-CCCcEEEeccHhhhhH--------HHHHHHHHHHhcCeeecCCCceecCC
Confidence 21 12221110 112222333 3467899999998854 46679999988653
Q ss_pred -EEEEEecCHHH--HHH------------------HhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhc-----c
Q 046258 309 -LRCIGATTLEE--YRK------------------YVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEG-----H 361 (900)
Q Consensus 309 -irvI~att~~~--~~~------------------~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~-----~ 361 (900)
+.+|.+||... ..+ .....|.|..|++. |.+...+.++...|++....++.. .
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33777777221 000 01135889999985 566677888888887655443322 1
Q ss_pred cCcccChhHHHHHHHHh
Q 046258 362 HGVRIQDRALVVAAQLS 378 (900)
Q Consensus 362 ~~v~i~~eal~~l~~~s 378 (900)
..+.++++++..++...
T Consensus 678 i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 678 VSLEVSQEARDWLAEKG 694 (758)
T ss_pred CCceECHHHHHHHHHhC
Confidence 33558899999888643
No 149
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.58 E-value=6.4e-14 Score=148.67 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=123.8
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHH-----h
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVR-----R 658 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~-----~ 658 (900)
+|...++|+||||||||.+|+++|..+.- +++.++.+++.. +|+|..+. +.++...+ +
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~---~~i~vsa~eL~s------------k~vGEsEk~IR~~F~~A~~~a~~~ 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI---EPIVMSAGELES------------ENAGEPGKLIRQRYREAADIIKKK 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC---CeEEEEHHHhhc------------CcCCcHHHHHHHHHHHHHHHhhcc
Confidence 33347999999999999999999999954 899999987643 36665543 12222222 2
Q ss_pred CCCeEEEEccccccCHH------------HHHHHHHHhhCCeee--cCC-CceeecCCeEEEEccCCCcHHHhcccCCcc
Q 046258 659 RPYSVVLFDEVEKAHIS------------VFNTLLQVLDDGRLT--DGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKV 723 (900)
Q Consensus 659 ~~~~vlllDEidk~~~~------------~~~~Ll~~ld~g~~~--d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~ 723 (900)
...|||||||||...+. +...|+.++|+-... ++. ...-....+.||+|||.+
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp------------ 278 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF------------ 278 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc------------
Confidence 34699999999976432 235788888741100 000 000123568999999984
Q ss_pred chHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCC
Q 046258 724 TMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDP 801 (900)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 801 (900)
..++|+|++ |||..+ ..++.++..+|++.+++ ...++...+..|+.. +++
T Consensus 279 --------------d~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r-----------~~~l~~~dv~~Lv~~-f~g 330 (413)
T PLN00020 279 --------------STLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFR-----------DDGVSREDVVKLVDT-FPG 330 (413)
T ss_pred --------------ccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhc-----------cCCCCHHHHHHHHHc-CCC
Confidence 568999997 998865 36889999999998887 234566777777754 443
Q ss_pred C----CCc-------hHHHHHHHHHHHHHHHHHHHc
Q 046258 802 I----YGA-------RPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 802 ~----~g~-------R~L~~~i~~~i~~~l~~~i~~ 826 (900)
. ||| +.++.||.+.=...+++.++.
T Consensus 331 q~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~ 366 (413)
T PLN00020 331 QPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVN 366 (413)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 2 343 355666666555556655554
No 150
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.1e-14 Score=165.35 Aligned_cols=195 Identities=21% Similarity=0.265 Sum_probs=141.6
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~ 240 (900)
.+|+++||++..++.|...+......|. ||+||+|||||++|+.|++.+........ . ....+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4678899999999999999987665665 89999999999999999999854221100 0 0113555
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- +| .+.++.+++.+.. ..+..|+||||+|.|.. ...|.|+..|+. ..+++|.+|
T Consensus 93 IDAas~------rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 93 MDAASN------RG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred eccccc------cc--HHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------HHHHHHHHHHHhcCCCeEEEEEE
Confidence 544321 11 1224444444332 13356899999999954 345688888875 468888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
|.... +.+.+++||..+.|..++.++....|+.++.. .++.++++++..++..+.+.+. +++.++
T Consensus 157 td~~K-----Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~GsmR------dALsLL 221 (830)
T PRK07003 157 TDPQK-----IPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSMR------DALSLT 221 (830)
T ss_pred CChhh-----ccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHH
Confidence 76542 56889999999999888888888888777765 5788999999999999966654 899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+.++
T Consensus 222 dQAia~ 227 (830)
T PRK07003 222 DQAIAY 227 (830)
T ss_pred HHHHHh
Confidence 988754
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.5e-14 Score=161.82 Aligned_cols=206 Identities=17% Similarity=0.282 Sum_probs=141.3
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-cc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DM 624 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~ 624 (900)
.++++...+.++||+.+++.+...+... +-| ..+||+||+|+|||++|+++++.+.+... ++..+ +|
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g-------rl~-hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN-------RLA-HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-------CCC-eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3567777889999999999999888643 222 35799999999999999999999975322 11111 12
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHHh-------CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCcee
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-------RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
..+.+......+.+......|.+ .+.+.+.. .++.|++|||+|+++.+.++.|+..|++
T Consensus 78 ~~~~~~~h~dv~eldaas~~gId---~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE----------- 143 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGID---DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE----------- 143 (535)
T ss_pred HHHhhcCCCeEEEeccccccCHH---HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------
Confidence 11111111111111111111222 23333222 3467999999999999999999999997
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
...+++||++++. ...+.+.+.+|+ ..+.|.|++.+++...+...+.
T Consensus 144 pp~~t~FIL~ttd--------------------------~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~------ 190 (535)
T PRK08451 144 PPSYVKFILATTD--------------------------PLKLPATILSRT-QHFRFKQIPQNSIISHLKTILE------ 190 (535)
T ss_pred cCCceEEEEEECC--------------------------hhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHH------
Confidence 3456888888865 345788999999 8999999999999888877766
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++++|+..+- + +.|.+.+.+++++
T Consensus 191 -~EG--i~i~~~Al~~Ia~~s~-G--dlR~alnlLdqai 223 (535)
T PRK08451 191 -KEG--VSYEPEALEILARSGN-G--SLRDTLTLLDQAI 223 (535)
T ss_pred -HcC--CCCCHHHHHHHHHHcC-C--cHHHHHHHHHHHH
Confidence 344 5789999999997643 2 3777777776544
No 152
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.5e-14 Score=161.95 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=139.5
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---ceeE-eccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---LLVR-IDMS 625 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---~~i~-i~~~ 625 (900)
.++++...+.++||++++..+.+.+... +....+||+||||||||++|+++|+.+.+.+. ++.. -+|.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 4677778889999999999998888654 22224699999999999999999999975221 1110 0111
Q ss_pred ccccc--cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQ--HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~--~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+... .++-.+-+ .+..+.+..+.+.+.+.. ..+.|++|||++.+....++.|+..|++ ..
T Consensus 78 ~i~~~~h~dv~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~ 144 (504)
T PRK14963 78 AVRRGAHPDVLEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PP 144 (504)
T ss_pred HHhcCCCCceEEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CC
Confidence 11100 01111111 111222222223333332 3457999999999999999999999997 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||+++|. ...+.+.+.+|+ ..+.|.|++.+++..++...+. .
T Consensus 145 ~~t~~Il~t~~--------------------------~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~-------~ 190 (504)
T PRK14963 145 EHVIFILATTE--------------------------PEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLE-------A 190 (504)
T ss_pred CCEEEEEEcCC--------------------------hhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHH-------H
Confidence 56788888775 345788999999 7899999999999999888876 3
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.| +.++++++++|+..+- +. .|.+.+.++..
T Consensus 191 eg--i~i~~~Al~~ia~~s~-Gd--lR~aln~Lekl 221 (504)
T PRK14963 191 EG--REAEPEALQLVARLAD-GA--MRDAESLLERL 221 (504)
T ss_pred cC--CCCCHHHHHHHHHHcC-CC--HHHHHHHHHHH
Confidence 44 4679999999986632 33 66666666553
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=167.69 Aligned_cols=204 Identities=23% Similarity=0.319 Sum_probs=141.2
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++...+.++||+++++.+.+.+... +....+||+||+|||||++|+.+|+.+++... ++-.+ .|.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 456677889999999999999888643 22335799999999999999999999986322 11111 122
Q ss_pred ccccccc--cccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQHS--VSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~~--~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
++..... +-.+-| .+..|.+..+.+.+.+.. ..+.|++|||+|+++...+|.|++.||+ ..
T Consensus 81 ~i~~g~~~d~~eid~--~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp 147 (576)
T PRK14965 81 EITEGRSVDVFEIDG--ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PP 147 (576)
T ss_pred HHhcCCCCCeeeeec--cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CC
Confidence 2211111 111222 112233333344444443 3467999999999999999999999997 34
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++||. ...+.+.+++|| ..+.|.+++.+++...+...+. .
T Consensus 148 ~~~~fIl~t~~--------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~-------~ 193 (576)
T PRK14965 148 PHVKFIFATTE--------------------------PHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIAD-------Q 193 (576)
T ss_pred CCeEEEEEeCC--------------------------hhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHH-------H
Confidence 57888888875 345788999999 8999999999999888877776 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
.| +.++++++..|++.+- + +.|...+.+++
T Consensus 194 eg--i~i~~~al~~la~~a~-G--~lr~al~~Ldq 223 (576)
T PRK14965 194 EG--ISISDAALALVARKGD-G--SMRDSLSTLDQ 223 (576)
T ss_pred hC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHH
Confidence 33 5788999998887643 2 36666555543
No 154
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3e-14 Score=163.97 Aligned_cols=203 Identities=20% Similarity=0.294 Sum_probs=137.4
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i-~~~ 625 (900)
++++...+.|+||+.+++.+.+.+... +-+ ..+||+||+|||||++|+.+|+.+++.. .++-.+ .|.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~-------ri~-ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN-------RVA-PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC-------CCC-ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 456777888999999988888888643 112 2699999999999999999999998632 111111 011
Q ss_pred ccccc--cccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQ--HSVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~--~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+... .++..+-|. ...|.+..+.+.+.+. ...+.||||||+|+++...++.|++.|++ ..
T Consensus 81 ~i~~g~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~ 147 (624)
T PRK14959 81 KVTQGMHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PP 147 (624)
T ss_pred HHhcCCCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cC
Confidence 11100 011122121 1122222233333333 23568999999999999999999999996 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++||. ...+.+.+.+|| .++.|.+++.+++..++...+. .
T Consensus 148 ~~~ifILaTt~--------------------------~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~-------~ 193 (624)
T PRK14959 148 ARVTFVLATTE--------------------------PHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLG-------R 193 (624)
T ss_pred CCEEEEEecCC--------------------------hhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHH-------H
Confidence 56788888875 345677899999 7889999999999988887665 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
.| +.+++++++.|+..+- + ++|...+.++
T Consensus 194 eg--i~id~eal~lIA~~s~-G--dlR~Al~lLe 222 (624)
T PRK14959 194 EG--VDYDPAAVRLIARRAA-G--SVRDSMSLLG 222 (624)
T ss_pred cC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHH
Confidence 33 5789999999997643 2 2666666654
No 155
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.7e-14 Score=165.13 Aligned_cols=207 Identities=22% Similarity=0.284 Sum_probs=142.2
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---------ceeE
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---------LLVR 621 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---------~~i~ 621 (900)
++++.....++||+..++.+.+.+... +....+||+||+|||||++|+.+|+.+++... ++-.
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g--------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG--------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 466777889999999999999988654 22236999999999999999999999976321 1100
Q ss_pred -ecccccccccccccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCce
Q 046258 622 -IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 622 -i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
-+|..+.+......+.-.+.+..|.+..+.+.+.++.. .+.|++|||+|.++...++.|++.|++
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe---------- 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE---------- 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh----------
Confidence 11211211111111111112233433334444444433 468999999999999999999999997
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
...+++||++++. ...+.+.+.+|| ..+.|.+++.+++..++...+.
T Consensus 159 -Pp~~~~fIl~tte--------------------------~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~----- 205 (598)
T PRK09111 159 -PPPHVKFIFATTE--------------------------IRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAA----- 205 (598)
T ss_pred -CCCCeEEEEEeCC--------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHH-----
Confidence 3356788887764 234667899999 8999999999999999888776
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
..| +.++++++++|+..+- + ..|.+.+.+++.
T Consensus 206 --keg--i~i~~eAl~lIa~~a~-G--dlr~al~~Ldkl 237 (598)
T PRK09111 206 --KEG--VEVEDEALALIARAAE-G--SVRDGLSLLDQA 237 (598)
T ss_pred --HcC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHHH
Confidence 233 5788899988887642 2 366666666554
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=6.6e-14 Score=163.30 Aligned_cols=205 Identities=20% Similarity=0.301 Sum_probs=141.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++...+.++||++.++.+.+++... +....+||+||+|||||++|+.+|+.+++... |+-.+ +|-
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 456777889999999999999988753 22335899999999999999999999976321 11111 121
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.+.. ++-.+-+ .+..|.+..+.+.+.+.. ..+.|++|||+|++....++.|++.|++ ..
T Consensus 81 ~i~~g~~~dv~eida--as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp 147 (559)
T PRK05563 81 AITNGSLMDVIEIDA--ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PP 147 (559)
T ss_pred HHhcCCCCCeEEeec--cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CC
Confidence 111110 1111111 112232323334444443 3468999999999999999999999997 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++|+. ...+++.+.+|| ..+.|.+++.+++..++...+. .
T Consensus 148 ~~~ifIlatt~--------------------------~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~-------~ 193 (559)
T PRK05563 148 AHVIFILATTE--------------------------PHKIPATILSRC-QRFDFKRISVEDIVERLKYILD-------K 193 (559)
T ss_pred CCeEEEEEeCC--------------------------hhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHH-------H
Confidence 57888887764 245788999999 7899999999999988877776 3
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.| +.++++++..|+..+- .+.|...+.+++.
T Consensus 194 eg--i~i~~~al~~ia~~s~---G~~R~al~~Ldq~ 224 (559)
T PRK05563 194 EG--IEYEDEALRLIARAAE---GGMRDALSILDQA 224 (559)
T ss_pred cC--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 33 5788999999887542 2477777766544
No 157
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.56 E-value=1.5e-14 Score=167.95 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=138.2
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCC-CCCCCCCcEEEEEechhhhh------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGD-VPSNLADVRLIALDMGALVA------ 248 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~-~p~~l~~~~~~~~~~~~l~~------ 248 (900)
.+|++++|++..++.+...+......|+||+||||||||++|+++++...+.. .| .-.+.+|+.+||+....
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~-~~~~~~fi~id~~~~~~~~~~~~ 140 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP-FKEGAAFVEIDATTARFDERGIA 140 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC-cCCCCCEEEEccccccCCccccc
Confidence 45677999999999999888777788999999999999999999998764321 11 11146799999874210
Q ss_pred ----ccc----ccch--H--HHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC---------
Q 046258 249 ----GAK----YRGE--F--EERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------- 307 (900)
Q Consensus 249 ----g~~----~~g~--~--~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------- 307 (900)
+.. +.|. + .+......+.+..++++ +|||||++.|.+..|. .|+++|+++
T Consensus 141 ~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG-~L~IdEI~~L~~~~q~--------~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 141 DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGG-VLFIDEIGELHPVQMN--------KLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred hhhcCCcccchhccccccccCCcccccCchhhccCCc-EEEEechhhCCHHHHH--------HHHHHHHhCeeeeccccc
Confidence 000 0000 0 00001112234455545 5999999999765444 666666532
Q ss_pred ---------------------cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCccc
Q 046258 308 ---------------------QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRI 366 (900)
Q Consensus 308 ---------------------~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i 366 (900)
.+++|++|+.... ..+|++++|+..+.+..++.++...+++..+++ .++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k----~~i~i 283 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK----IGINL 283 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH----cCCCc
Confidence 3588888876542 478999999998888888888888899887776 45779
Q ss_pred ChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 367 QDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 367 ~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
+++++..+..++. --..+..+++.++..
T Consensus 284 s~~al~~I~~y~~-------n~Rel~nll~~Aa~~ 311 (531)
T TIGR02902 284 EKHALELIVKYAS-------NGREAVNIVQLAAGI 311 (531)
T ss_pred CHHHHHHHHHhhh-------hHHHHHHHHHHHHHH
Confidence 9999987776552 124677777776643
No 158
>PHA02244 ATPase-like protein
Probab=99.56 E-value=1.7e-13 Score=147.15 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=114.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
++||+||||||||++|++||..+.. +|++++. +.+ ...+.|... ..|.-..+.+..++ ..+++++||||
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~---pfv~In~--l~d---~~~L~G~i~-~~g~~~dgpLl~A~--~~GgvLiLDEI 189 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDL---DFYFMNA--IMD---EFELKGFID-ANGKFHETPFYEAF--KKGGLFFIDEI 189 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC---CEEEEec--ChH---HHhhccccc-ccccccchHHHHHh--hcCCEEEEeCc
Confidence 4999999999999999999999854 8998873 221 223444211 11111123344444 36789999999
Q ss_pred cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc
Q 046258 670 EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD 749 (900)
Q Consensus 670 dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~ 749 (900)
+.++++++..|..+++++.+....+......++++|+|+|.........+.+ .+.+++++++||
T Consensus 190 d~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G---------------~k~L~~AllDRF- 253 (383)
T PHA02244 190 DASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVA---------------RNKIDGATLDRF- 253 (383)
T ss_pred CcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCC---------------CcccCHHHHhhc-
Confidence 9999999999999999887765555544557899999999843211110000 356899999999
Q ss_pred ceeecCCCCHHHHHHHHH--HHHHHHHHH----HHhcCCccccCHHHHHHHH
Q 046258 750 EIVVFDPLSHEQLRKVAR--LQMKDVAIR----LAERGVALAVTDAALDIVL 795 (900)
Q Consensus 750 ~~i~f~pl~~e~~~~I~~--~~l~~~~~~----~~~~~~~~~~~~~a~~~l~ 795 (900)
..|.|..+++.+. .|+. ..|.++... +..+|+...++...+-+.+
T Consensus 254 v~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a 304 (383)
T PHA02244 254 APIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGK 304 (383)
T ss_pred EEeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 7888888775333 2221 222222222 2335555566655444433
No 159
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.4e-14 Score=163.56 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=137.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEec-cc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRID-MS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i~-~~ 625 (900)
++++.....++||+.+++.+.+.+... +....+||+||+|||||++|+.+|+.+++.. .++-.++ |.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 355667788999999999999888653 2223479999999999999999999997632 1211110 11
Q ss_pred ccccccccccccC-CCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecC
Q 046258 626 EYMEQHSVSRLIG-APPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 626 ~~~~~~~~~~l~G-~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
.+..... ..++. ...+..+.+..+.+.+.+.. .++.|++|||+|+++...+|.|++.|++ ...
T Consensus 81 ~i~~~~~-~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~ 148 (527)
T PRK14969 81 EIDSGRF-VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPE 148 (527)
T ss_pred HHhcCCC-CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCC
Confidence 1110000 01110 00111222222223333332 2457999999999999999999999997 235
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
+++||++|+. ...+.+.+++|| ..+.|.+++.+++.+.+...+. ..
T Consensus 149 ~~~fIL~t~d--------------------------~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~-------~e 194 (527)
T PRK14969 149 HVKFILATTD--------------------------PQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILE-------QE 194 (527)
T ss_pred CEEEEEEeCC--------------------------hhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHH-------Hc
Confidence 6778887764 234667799999 9999999999999888877776 23
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
| +.++++++..|+..+- +. .|...+.++++
T Consensus 195 g--i~~~~~al~~la~~s~-Gs--lr~al~lldqa 224 (527)
T PRK14969 195 N--IPFDATALQLLARAAA-GS--MRDALSLLDQA 224 (527)
T ss_pred C--CCCCHHHHHHHHHHcC-CC--HHHHHHHHHHH
Confidence 4 5789999999987642 23 77777776543
No 160
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=4.8e-14 Score=155.50 Aligned_cols=182 Identities=25% Similarity=0.319 Sum_probs=127.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
..+++++|++..++.+...+.. ....+++|+||||||||++|+.+|+.+ +..+...+...+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~~~~~-- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGPALEK-- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecccccC--
Confidence 3567799999999988777652 345689999999999999999999998 44455554432211
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--------------------CcEE
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--------------------GQLR 310 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------------g~ir 310 (900)
.+ .+..++. ....+.||||||+|.+....+ +.|...++. ..+.
T Consensus 90 --~~----~l~~~l~---~l~~~~vl~IDEi~~l~~~~~--------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 --PG----DLAAILT---NLEEGDVLFIDEIHRLSPVVE--------EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred --hH----HHHHHHH---hcccCCEEEEecHhhcchHHH--------HHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 11 1222222 233467899999999864322 234443332 2356
Q ss_pred EEEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|++|++... .++.|++||.. +.+..|+.++..++++..... .++.++++++..++..+.+ .|.
T Consensus 153 li~at~~~~~-----l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G------~pR 217 (328)
T PRK00080 153 LIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRG------TPR 217 (328)
T ss_pred EEeecCCccc-----CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCC------Cch
Confidence 7888876542 67889999964 788889999999999876665 5788999999999998844 456
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
.+..+++.+...
T Consensus 218 ~a~~~l~~~~~~ 229 (328)
T PRK00080 218 IANRLLRRVRDF 229 (328)
T ss_pred HHHHHHHHHHHH
Confidence 777777765543
No 161
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.8e-14 Score=161.45 Aligned_cols=205 Identities=19% Similarity=0.277 Sum_probs=140.9
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCce--eEecccc-
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLL--VRIDMSE- 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~--i~i~~~~- 626 (900)
.++++.....++||+.+++.+.+++... +.| ..+||+||+|||||++|+.+|+.+.+....- ..-.|..
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~-------rl~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNN-------KLT-HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-------CCC-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3567777889999999999998887543 222 3699999999999999999999997633110 0111211
Q ss_pred --cccc--cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 627 --YMEQ--HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 627 --~~~~--~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
+... .+.-.+-+ .+..|.+..+.+.+.+.. .++.|++|||+|.++...++.|+..|++ .
T Consensus 80 r~i~~~~h~DiieIda--as~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------P 146 (605)
T PRK05896 80 ESINTNQSVDIVELDA--ASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------P 146 (605)
T ss_pred HHHHcCCCCceEEecc--ccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------C
Confidence 0000 01111111 112232222333333333 2457999999999999999999999997 2
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||++|+. ...+.+.+.+|| ..+.|.+++.+++..++...+.
T Consensus 147 p~~tvfIL~Tt~--------------------------~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~------- 192 (605)
T PRK05896 147 PKHVVFIFATTE--------------------------FQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAK------- 192 (605)
T ss_pred CCcEEEEEECCC--------------------------hHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHH-------
Confidence 356888887764 345788999999 7999999999999988887776
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
..| +.++++++..|+..+. + +.|.+.+.++.
T Consensus 193 keg--i~Is~eal~~La~lS~-G--dlR~AlnlLek 223 (605)
T PRK05896 193 KEK--IKIEDNAIDKIADLAD-G--SLRDGLSILDQ 223 (605)
T ss_pred HcC--CCCCHHHHHHHHHHcC-C--cHHHHHHHHHH
Confidence 233 5789999999987643 2 37777777765
No 162
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=1.1e-13 Score=152.41 Aligned_cols=194 Identities=18% Similarity=0.207 Sum_probs=142.7
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.++++...+.++|++.....+...+... ..| ..++|+||||+|||++|+++++.+.. +++.++++. ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~-------~~~-~~lll~G~~G~GKT~la~~l~~~~~~---~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG-------RIP-NMLLHSPSPGTGKTTVAKALCNEVGA---EVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC-------CCC-eEEEeeCcCCCCHHHHHHHHHHHhCc---cceEeccCc-cc
Confidence 6788888899999999888888877532 223 35667999999999999999998743 677888765 11
Q ss_pred ccccccccCCCCCCcccccccchhHHHH----hCCCeEEEEcccccc-CHHHHHHHHHHhhCCeeecCCCceeecCCeEE
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKA-HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVI 704 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~-~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~i 704 (900)
...+. ..+.+... ..++.||+|||+|.+ ..+.++.|..+++.. ..++.|
T Consensus 81 ---~~~i~------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-----------~~~~~~ 134 (316)
T PHA02544 81 ---IDFVR------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-----------SKNCSF 134 (316)
T ss_pred ---HHHHH------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-----------CCCceE
Confidence 00000 01111111 135689999999999 777888888888852 256789
Q ss_pred EEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 046258 705 IMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVAL 784 (900)
Q Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~ 784 (900)
|+|+|. ...+.+.+.+|| ..+.|++++.++...|+...+.+....+...| +
T Consensus 135 Ilt~n~--------------------------~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~ 185 (316)
T PHA02544 135 IITANN--------------------------KNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--V 185 (316)
T ss_pred EEEcCC--------------------------hhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--C
Confidence 999986 345789999999 78899999999999999888877766665564 4
Q ss_pred ccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 785 AVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 785 ~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
.++++++.++++.+|+. .|.+.+.++
T Consensus 186 ~i~~~al~~l~~~~~~d---~r~~l~~l~ 211 (316)
T PHA02544 186 EVDMKVLAALVKKNFPD---FRRTINELQ 211 (316)
T ss_pred CCCHHHHHHHHHhcCCC---HHHHHHHHH
Confidence 77999999999988743 455554454
No 163
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=9.2e-14 Score=154.88 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=135.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHh--------cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSR--------AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~--------~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+..+.|++...+.+.+.+.... .|+. |...+||+||||||||++|+++|..+.. +|+.+.++++
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~----~pkgvLL~GppGTGKT~LAkalA~~l~~---~fi~i~~s~l 215 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID----PPRGVLLYGPPGTGKTMLAKAVAHHTTA---TFIRVVGSEF 215 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC----CCceEEEECCCCCCHHHHHHHHHHhcCC---CEEEEehHHH
Confidence 56779999999988888876432 1222 3347999999999999999999998844 8888887665
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCC
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g 694 (900)
.. . |+|.... ..++...+....+||||||||.+. ..++..+.+++..-. +.
T Consensus 216 ~~-----k-------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld---~~- 279 (398)
T PTZ00454 216 VQ-----K-------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD---GF- 279 (398)
T ss_pred HH-----H-------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh---cc-
Confidence 32 1 3333221 223344455567999999999762 344445555443200 00
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKD 772 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~ 772 (900)
-...+++||+|||.. ..++|+++. |||..|.|++++.++...|++.++..
T Consensus 280 --~~~~~v~VI~aTN~~--------------------------d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 280 --DQTTNVKVIMATNRA--------------------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred --CCCCCEEEEEecCCc--------------------------hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 012468899999973 567899985 99999999999999999999877762
Q ss_pred HHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 773 VAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 773 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
.++.-.++ +..++.. +..|..++|+.++..+...++.
T Consensus 332 -------~~l~~dvd---~~~la~~--t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 332 -------MNLSEEVD---LEDFVSR--PEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred -------CCCCcccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 22222222 3444432 3456678898888877666553
No 164
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.6e-14 Score=161.17 Aligned_cols=197 Identities=21% Similarity=0.315 Sum_probs=141.1
Q ss_pred CCCCCCCCchHHHHHHHHHH---cc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRIL---SR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|.++.|.+++...+.+++ .. +-+..++|+||||||||.+|+++|-.. +++|++++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 45778899887766665544 32 456789999999999999999999765 555999988
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhh---HHHhHhhhhh----cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMD---AANLFKPMLA----RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~---~~~~L~~~l~----~g~irvI~ 313 (900)
++.+. .+.|-=..+++.+|..++... |||+||||||.+...+.. +|..+ ..|+|+-.|+ +..+.+|+
T Consensus 217 S~FVe--mfVGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFVE--MFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhhh--hhcCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 88765 445555568899999888766 799999999999876643 22222 2455555554 23699999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+.+. .||+|.| ||+. |.++.|+...|++|++..... ......++- ..++..+.+|... +
T Consensus 294 aTNRpdV-----lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl---~~iAr~tpGfsGA-----d 358 (596)
T COG0465 294 ATNRPDV-----LDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDL---KKIARGTPGFSGA-----D 358 (596)
T ss_pred cCCCccc-----chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCH---HHHhhhCCCcccc-----h
Confidence 9999986 8999999 9986 888999999999999855543 111212222 2255555555443 6
Q ss_pred HHHHHHHHHH
Q 046258 391 AIDLVDEACA 400 (900)
Q Consensus 391 a~~Lld~a~a 400 (900)
...++.+++-
T Consensus 359 L~nl~NEAal 368 (596)
T COG0465 359 LANLLNEAAL 368 (596)
T ss_pred HhhhHHHHHH
Confidence 6677776663
No 165
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.8e-14 Score=160.43 Aligned_cols=195 Identities=21% Similarity=0.225 Sum_probs=141.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.|...+.+....+ +||+||+|||||++|+.+|+.+.....+.. -....++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 467889999999999999998765555 599999999999999999999854221100 01123555
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.++- .+ .+.++.++..+.. .++..|+||||+|.|... +.|.|+..+++ +.+.+|.+|
T Consensus 92 IDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--------A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 92 IDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--------SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred eccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH--------HHHHHHHHHhcCCCCcEEEEEE
Confidence 554321 11 2234444444322 234568999999999643 45688888886 567888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+.... ..+.+++|+..+.+..++..+....++.++.+ .++.++++++..++..+.+. ..++..++
T Consensus 156 td~~k-----Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd------LRdALnLL 220 (702)
T PRK14960 156 TDPQK-----LPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS------LRDALSLT 220 (702)
T ss_pred CChHh-----hhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 65442 45778899999999999998988888887766 57889999999999998554 44888999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.++++
T Consensus 221 DQaIay 226 (702)
T PRK14960 221 DQAIAY 226 (702)
T ss_pred HHHHHh
Confidence 988764
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.55 E-value=1e-13 Score=157.15 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=111.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-----CCceeEec
Q 046258 557 KERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-----ENLLVRID 623 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~i~i~ 623 (900)
...|.|++..++.+.+++... ..|+. |...+||+||||||||++|+++|+.+... ......++
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~----~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLK----PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC----CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 345667888888888877542 12322 23369999999999999999999998542 11122222
Q ss_pred ccccccccccccccCCCCCCcccccc--cchhHHHHh----CCCeEEEEccccccCH------------HHHHHHHHHhh
Q 046258 624 MSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRR----RPYSVVLFDEVEKAHI------------SVFNTLLQVLD 685 (900)
Q Consensus 624 ~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~----~~~~vlllDEidk~~~------------~~~~~Ll~~ld 685 (900)
+.. +.+++ .|+|..+. ..++...+. ...+||||||||.+.. .+.+.|+..||
T Consensus 257 v~~-------~eLl~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKG-------PELLN---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ccc-------hhhcc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 221 11222 24444332 223333332 2468999999997621 24567888887
Q ss_pred CCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHH
Q 046258 686 DGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLR 763 (900)
Q Consensus 686 ~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~ 763 (900)
.-. ...++++|+|||. ...++|+|++ |||..|.|++++.++..
T Consensus 327 gl~---------~~~~ViVI~ATN~--------------------------~d~LDpALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 327 GVE---------SLDNVIVIGASNR--------------------------EDMIDPAILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred ccc---------cCCceEEEeccCC--------------------------hhhCCHhhcCccccceEEEeCCCCHHHHH
Confidence 411 2357899999998 3568999996 99999999999999999
Q ss_pred HHHHHHHH
Q 046258 764 KVARLQMK 771 (900)
Q Consensus 764 ~I~~~~l~ 771 (900)
+|++.++.
T Consensus 372 ~Il~~~l~ 379 (512)
T TIGR03689 372 DIFSKYLT 379 (512)
T ss_pred HHHHHHhh
Confidence 99999886
No 167
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-14 Score=139.88 Aligned_cols=172 Identities=26% Similarity=0.396 Sum_probs=117.7
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEE
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVV 664 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vl 664 (900)
|...+|++||||||||.||+++|+.. ...|+++..|+|..+ |.|..+. +.++...+.+..+++
T Consensus 188 pprgvllygppg~gktml~kava~~t---~a~firvvgsefvqk------------ylgegprmvrdvfrlakenapsii 252 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK------------YLGEGPRMVRDVFRLAKENAPSII 252 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH------------HhccCcHHHHHHHHHHhccCCcEE
Confidence 33469999999999999999999887 448999999998754 3333221 334555666777999
Q ss_pred EEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 665 LFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 665 llDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
|+||||.. +.++|..|+++|..- |+.. ...|+-+||+||.
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqm---dgfd---q~~nvkvimatnr----------------------- 303 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQM---DGFD---QTTNVKVIMATNR----------------------- 303 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCcC---cccceEEEEecCc-----------------------
Confidence 99999863 567888888877521 1111 1258889999998
Q ss_pred HHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHH
Q 046258 734 QEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRR 810 (900)
Q Consensus 734 ~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~ 810 (900)
...++|+|+ +|+|..|.|+-++..+.+-++..... +..+++++ ++.++. .+...+..++..
T Consensus 304 ---adtldpallrpgrldrkiefplpdrrqkrlvf~tits-----------km~ls~~vdle~~v~--rpdkis~adi~a 367 (408)
T KOG0727|consen 304 ---ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS-----------KMNLSDEVDLEDLVA--RPDKISGADINA 367 (408)
T ss_pred ---ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh-----------cccCCcccCHHHHhc--CccccchhhHHH
Confidence 577899999 69999999998887777666655444 22333333 232321 333444556666
Q ss_pred HHHHHHHH
Q 046258 811 WLEKKVVT 818 (900)
Q Consensus 811 ~i~~~i~~ 818 (900)
+++.+=+.
T Consensus 368 icqeagm~ 375 (408)
T KOG0727|consen 368 ICQEAGML 375 (408)
T ss_pred HHHHHhHH
Confidence 66554443
No 168
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.1e-14 Score=159.36 Aligned_cols=205 Identities=22% Similarity=0.331 Sum_probs=140.8
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeE-eccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVR-IDMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~-i~~~ 625 (900)
++++.....++||+.+++.+.+++... +....+||+||+|+|||++|+.+|+.+++.. .|+-. .+|.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 456667788999999999999888653 2223578999999999999999999997521 12211 1222
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++-.+-+ ....|.+..+.+.+.+... .+.|+++||+|+++...++.|+..|++ ..
T Consensus 81 ~i~~g~~~d~~eida--as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp 147 (486)
T PRK14953 81 EIDKGSFPDLIEIDA--ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PP 147 (486)
T ss_pred HHhcCCCCcEEEEeC--ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CC
Confidence 221111 1111111 1122333333444555433 357999999999999999999999997 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++++. ...+.+.+.+|+ ..+.|.|++.+++..++...+. .
T Consensus 148 ~~~v~Il~tt~--------------------------~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k-------~ 193 (486)
T PRK14953 148 PRTIFILCTTE--------------------------YDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICN-------E 193 (486)
T ss_pred CCeEEEEEECC--------------------------HHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHH-------H
Confidence 45677776653 234677899999 7899999999999998887776 3
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.| +.++++++..|+... .+ +.|.+.+.++..
T Consensus 194 eg--i~id~~al~~La~~s-~G--~lr~al~~Ldkl 224 (486)
T PRK14953 194 EK--IEYEEKALDLLAQAS-EG--GMRDAASLLDQA 224 (486)
T ss_pred cC--CCCCHHHHHHHHHHc-CC--CHHHHHHHHHHH
Confidence 34 578999999998753 23 377777777654
No 169
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=5.5e-14 Score=160.15 Aligned_cols=195 Identities=23% Similarity=0.268 Sum_probs=140.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCC-----CCC--CC------------CC
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGD-----VPS--NL------------AD 235 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~-----~p~--~l------------~~ 235 (900)
.+|+++||++..++.|.+.+......|. ||+||+|||||++|+.|++.+.... .+. .. ..
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 4677899999999999999988766665 8899999999999999999985421 000 00 01
Q ss_pred cEEEEEechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEE
Q 046258 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLR 310 (900)
Q Consensus 236 ~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~ir 310 (900)
..++++|.+.- .| .+.++.+++.+.. .++..|+||||+|.|.. ...|.|+..|+. +.++
T Consensus 93 pDviEIdAas~------~g--VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------~AaNALLKTLEEPP~~v~ 156 (700)
T PRK12323 93 VDYIEMDAASN------RG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPEHVK 156 (700)
T ss_pred CcceEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------HHHHHHHHhhccCCCCce
Confidence 13455544321 11 1234444444332 23456899999999954 356788888876 5688
Q ss_pred EEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+|.+||.... +.+.+++|+..+.+..++.++....++.++.. .++.++++++..++..+++. +.+
T Consensus 157 FILaTtep~k-----LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs------~Rd 221 (700)
T PRK12323 157 FILATTDPQK-----IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS------MRD 221 (700)
T ss_pred EEEEeCChHh-----hhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHH
Confidence 8888875543 56899999999999998988888888777654 46788999999999988544 458
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
+..++|.+.+.
T Consensus 222 ALsLLdQaia~ 232 (700)
T PRK12323 222 ALSLTDQAIAY 232 (700)
T ss_pred HHHHHHHHHHh
Confidence 89999887653
No 170
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-14 Score=145.75 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=129.8
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
.++.++-|-+..++.+.+.+.- +.+..|+|||+||||||.+|+++|+.. .+.|+.+-
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvv 251 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVV 251 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhh
Confidence 5566778888899988886642 466789999999999999999999876 66688887
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-------cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-------RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~g~irvI 312 (900)
-+.++. +|.|+-...++.+|..+.... |.|+|||||+.+-..+.. +|..++...++.+|. +|.+.||
T Consensus 252 GseLiQ--kylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvi 328 (440)
T KOG0726|consen 252 GSELIQ--KYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328 (440)
T ss_pred hHHHHH--HHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEE
Confidence 788876 678888888999999887765 889999999999765533 556666666666653 7899999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHH
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGL 354 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l 354 (900)
.+||+-+. +||+|.| |++. |+++.|+...+..|+...
T Consensus 329 mATnrie~-----LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 329 MATNRIET-----LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred Eecccccc-----cCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 99998774 8999999 8875 999999988777776433
No 171
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.54 E-value=9.1e-14 Score=148.00 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=112.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc--ccc----cccchhHHHHhCCCeE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV--GHE----EGGQLTEAVRRRPYSV 663 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~--g~~----~~~~l~~~~~~~~~~v 663 (900)
++||.||||||||++|+.+|+.+.. ++++++|+.-. +..+++|...-.+ |.. ..|.+..+.+ .+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~---~~~rV~~~~~l---~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW---PCVRVNLDSHV---SRIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC---CeEEEEecCCC---ChhhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 5999999999999999999999955 99999998843 3456777642111 110 1134444444 4678
Q ss_pred EEEccccccCHHHHHHHHHHhhC-Ceeec-CCCceee-cCCeEEEEccCCCc-HHHhcccCCccchHHHHHHHHHHHHhc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDD-GRLTD-GQGRTVD-FRNTVIIMTSNLGA-EHLLSGMMGKVTMQVARDQVLQEVRKH 739 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~-g~~~d-~~g~~~~-~~~~~iI~tsn~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (900)
+|||||+.++|++++.|..+||. |.++- ..++.+. ..++++|+|+|... ..- .+...+ ...
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~-~G~y~G--------------t~~ 202 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDT-TGLYHG--------------TQQ 202 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCC-Ccceee--------------eec
Confidence 99999999999999999999994 56654 4466663 44889999999731 000 000000 345
Q ss_pred ccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 740 FRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 740 ~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
++.++++||-.++.+..++.++-.+|+...
T Consensus 203 l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 203 INQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred CCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 799999999555678889998888887654
No 172
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.54 E-value=2.3e-14 Score=166.91 Aligned_cols=194 Identities=23% Similarity=0.310 Sum_probs=138.8
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------- 247 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------- 247 (900)
....+||+++.++++.+.+.+ ....+|||+|++||||+++|++||....+.+.| |+.+||+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p-------~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKP-------LVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCC-------eEEEEcccCChHHHHHH
Confidence 466799999999999998887 667789999999999999999999988666555 9999998763
Q ss_pred -hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEE
Q 046258 248 -AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIG 313 (900)
Q Consensus 248 -~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~ 313 (900)
+|+. +|.|.+......+.++.+++|+ ||||||+.|....|. .|.++++.+ .+|+|+
T Consensus 258 lfG~~-~g~~~ga~~~~~g~~~~a~gGt-L~ldeI~~L~~~~Q~--------~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 258 LFGHV-KGAFTGAISNRSGKFELADGGT-LFLDEIGELPLALQA--------KLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred hcCcc-ccccCCCcccCCcchhhcCCCE-EEecChhhCCHHHHH--------HHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 3332 3333333322233455667677 999999999876655 777777654 469999
Q ss_pred ecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHHH----HHHHHHHHhcccC---cccChhHHHHHHHHhhhhccC
Q 046258 314 ATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVSI----LRGLKEKYEGHHG---VRIQDRALVVAAQLSARYITG 384 (900)
Q Consensus 314 att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~i----lr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~ 384 (900)
+|+.+..... -.....|..|+..+.+..|+..+|.+- ++.+..++...++ +.++++++..+..+.
T Consensus 328 ~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~------ 401 (509)
T PRK05022 328 ATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD------ 401 (509)
T ss_pred ecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC------
Confidence 9976543221 112455666888888889998888763 3455555544333 558999999888876
Q ss_pred CCChhhHHHHH
Q 046258 385 RHLPDKAIDLV 395 (900)
Q Consensus 385 ~~~p~~a~~Ll 395 (900)
+|.+...|-
T Consensus 402 --WPGNvrEL~ 410 (509)
T PRK05022 402 --WPGNVRELE 410 (509)
T ss_pred --CCCcHHHHH
Confidence 665655543
No 173
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.54 E-value=7e-14 Score=155.27 Aligned_cols=201 Identities=16% Similarity=0.224 Sum_probs=132.1
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 554 QNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 554 ~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
....+.++|+++.|+.+..++.. .+++||.||||||||++|++||..+.+.. +|..+.+.-.+ .
T Consensus 16 ~~l~~~i~gre~vI~lll~aala-----------g~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ftt----p 79 (498)
T PRK13531 16 SALEKGLYERSHAIRLCLLAALS-----------GESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFST----P 79 (498)
T ss_pred HHHhhhccCcHHHHHHHHHHHcc-----------CCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecC----c
Confidence 34456789999999888888732 24799999999999999999999886533 66666654211 2
Q ss_pred ccccCCCCCCcccccccchhHHHHhC---CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 634 SRLIGAPPGYVGHEEGGQLTEAVRRR---PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~~~l~~~~~~~---~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
++++|...-+..... +.+... ... ...++|+|||.++++.+|+.||++|+++.|+. .|+......-+|+++||.
T Consensus 80 ~DLfG~l~i~~~~~~-g~f~r~-~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 80 EEVFGPLSIQALKDE-GRYQRL-TSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMRLLVTASNE 156 (498)
T ss_pred HHhcCcHHHhhhhhc-Cchhhh-cCCccccccEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCcEEEEECCC
Confidence 467774211111111 112110 111 12389999999999999999999999999986 455566555566666674
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC-HHHHHHHHHHHHH---------------HHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS-HEQLRKVARLQMK---------------DVA 774 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~-~e~~~~I~~~~l~---------------~~~ 774 (900)
-++ .+.|.+++++||-..+..+|++ .++...|+...-. ++
T Consensus 157 LPE-----------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel- 212 (498)
T PRK13531 157 LPE-----------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEY- 212 (498)
T ss_pred Ccc-----------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHH-
Confidence 321 3567889999996678888887 4665667654211 10
Q ss_pred HHHHhcCCccccCHHHHHHHHHc
Q 046258 775 IRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
..+...--.+.+++.+++++.+.
T Consensus 213 ~~lq~~v~~V~v~d~v~eyI~~L 235 (498)
T PRK13531 213 QQWQKEIGKITLPDHVFELIFQL 235 (498)
T ss_pred HHHHHHhcceeCCHHHHHHHHHH
Confidence 11111112478889988888755
No 174
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.2e-13 Score=157.07 Aligned_cols=194 Identities=21% Similarity=0.270 Sum_probs=134.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.+...+......| +||+|||||||||+|+.+|+.+.....+.. -....++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 467889999999999988887765555 799999999999999999998854221100 00113555
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| ...++.+.+.+.. .+...|+||||+|.|... ..+.|+..+++ +.+.+|++|
T Consensus 91 l~aa~~------~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 91 LDAASN------RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------AFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred EeCccc------CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH--------HHHHHHHHHHhCCCcEEEEEEe
Confidence 554321 11 1223344333332 233568999999999542 34578888876 678888777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+++.+|+..+.+..++..+...+++..... .++.++++++..++..+.+.++ .++.++
T Consensus 155 tn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~GdlR------~aln~L 219 (472)
T PRK14962 155 TNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGLR------DALTML 219 (472)
T ss_pred CChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH------HHHHHH
Confidence 6432 257899999999999889988888888776654 5788999999999987754433 567777
Q ss_pred HHHHH
Q 046258 396 DEACA 400 (900)
Q Consensus 396 d~a~a 400 (900)
+.++.
T Consensus 220 e~l~~ 224 (472)
T PRK14962 220 EQVWK 224 (472)
T ss_pred HHHHH
Confidence 76554
No 175
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=9.6e-14 Score=157.92 Aligned_cols=205 Identities=20% Similarity=0.269 Sum_probs=141.7
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-----cee-Eecc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-----LLV-RIDM 624 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-----~~i-~i~~ 624 (900)
++++...+.++||+.++..+.+.++.. +....+||+||+|+|||++|+.+|+.+.+... ++. ..+|
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 456667788999999999888888643 22236899999999999999999999976321 111 1122
Q ss_pred ccccccc--ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 625 SEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 625 ~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
..+.... ..-.+-|. ...|.+..+.+.+.+. ...+.|++|||+|++....++.|++.|++ .
T Consensus 82 ~~i~~~~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p 148 (451)
T PRK06305 82 KEISSGTSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------P 148 (451)
T ss_pred HHHhcCCCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------C
Confidence 2222111 11222221 1233333233333332 24678999999999999999999999997 2
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||+++|. ...+.+.+.+|| ..+.|.+++.+++..++...+.
T Consensus 149 ~~~~~~Il~t~~--------------------------~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~------- 194 (451)
T PRK06305 149 PQHVKFFLATTE--------------------------IHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAK------- 194 (451)
T ss_pred CCCceEEEEeCC--------------------------hHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHH-------
Confidence 246778888764 345778999999 8899999999999988877765
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
..| +.+++++++.|+..+ .++ .|.+.+.++..
T Consensus 195 ~eg--~~i~~~al~~L~~~s-~gd--lr~a~~~Lekl 226 (451)
T PRK06305 195 QEG--IETSREALLPIARAA-QGS--LRDAESLYDYV 226 (451)
T ss_pred HcC--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHH
Confidence 233 578999999999764 333 67776666553
No 176
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.53 E-value=1.1e-13 Score=155.02 Aligned_cols=205 Identities=20% Similarity=0.345 Sum_probs=133.3
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHHHhcCC---C-CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 554 QNEKERLIGLAEAVNAVAESVLRSRAGL---G-RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 554 ~~~~~~l~g~~~av~~l~~~i~~~~~g~---~-~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
......|.|++..++.+.+.+......- . ..-.|...+||+||||||||++|+++|..+.. +|+.++.+++..
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~fi~V~~seL~~ 255 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA---TFLRVVGSELIQ 255 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CEEEEecchhhh
Confidence 3456778999999999998886431100 0 00123347999999999999999999998844 788888776532
Q ss_pred ccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhC--CeeecCCC
Q 046258 630 QHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDD--GRLTDGQG 694 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~--g~~~d~~g 694 (900)
. |+|.... ..++...+....+||||||||.+. .+++..++++|.. |. .
T Consensus 256 k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~-~---- 318 (438)
T PTZ00361 256 K------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF-D---- 318 (438)
T ss_pred h------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh-c----
Confidence 1 3333221 223334444556899999999763 2345555555431 11 0
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKD 772 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~ 772 (900)
...++.||+|||. ...++|+++ +|||..|.|++++.++..+|++.++..
T Consensus 319 ---~~~~V~VI~ATNr--------------------------~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 ---SRGDVKVIMATNR--------------------------IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ---ccCCeEEEEecCC--------------------------hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1246889999997 355788887 599999999999999999999987762
Q ss_pred HHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 773 VAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 773 ~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
..+++++ +..++.. +..+.+.+++.++..+...++
T Consensus 370 -----------~~l~~dvdl~~la~~--t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 370 -----------MTLAEDVDLEEFIMA--KDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred -----------CCCCcCcCHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 1222222 3344432 233557778877766555444
No 177
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.53 E-value=1.7e-14 Score=169.63 Aligned_cols=195 Identities=25% Similarity=0.372 Sum_probs=136.3
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------ 247 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------ 247 (900)
+.++.++|+++.++++++.+.+ ....+|||+||+|||||++|++||....+.+.| |+.+||+.+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p-------fv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRP-------FVKVNCAALSETLLES 265 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCC-------eEEeecCCCCHHHHHH
Confidence 4677899999999999998876 567799999999999999999999988666555 9999998752
Q ss_pred --hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEE
Q 046258 248 --AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCI 312 (900)
Q Consensus 248 --~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI 312 (900)
+|+. +|.|.+......+.+..+++|+ ||||||+.|....|. .|..+++.+ .+|+|
T Consensus 266 ~lfg~~-~~~~~~~~~~~~g~~~~a~~Gt-L~ldei~~L~~~~Q~--------~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 266 ELFGHE-KGAFTGAIAQRKGRFELADGGT-LFLDEIGEISPAFQA--------KLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHcCCC-CCccCCCCcCCCCcccccCCCe-EEEechhhCCHHHHH--------HHHHHHhcCcEEECCCCceEeecEEEE
Confidence 2322 2333322222222344556566 999999999876665 788887654 37999
Q ss_pred EecCHHHHHHHh--hccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC--cccChhHHHHHHHHhhhhccC
Q 046258 313 GATTLEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG--VRIQDRALVVAAQLSARYITG 384 (900)
Q Consensus 313 ~att~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~--v~i~~eal~~l~~~s~~~~~~ 384 (900)
++|+.+...... ...+.|..|+..+.+..|+..+|.+ +++.+..++...++ +.++++++..+..+.
T Consensus 336 ~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~------ 409 (534)
T TIGR01817 336 AATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK------ 409 (534)
T ss_pred EeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC------
Confidence 999765432211 1235566788888888888877655 44555555543333 568999988888765
Q ss_pred CCChhhHHHHH
Q 046258 385 RHLPDKAIDLV 395 (900)
Q Consensus 385 ~~~p~~a~~Ll 395 (900)
+|.+...|-
T Consensus 410 --WPGNvrEL~ 418 (534)
T TIGR01817 410 --WPGNVRELE 418 (534)
T ss_pred --CCChHHHHH
Confidence 565665543
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=99.53 E-value=7.3e-14 Score=153.30 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
.++++++|++..+..+..++.....+|+||+||||||||++|+++|+.+..... ...++.+|.+.... ..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~~----~~- 79 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDRG----ID- 79 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeeccccccc----HH-
Confidence 457789999999999998888777788999999999999999999999854322 12366666554211 11
Q ss_pred HHHHHHHHHHHHHHc------CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhcc
Q 046258 256 FEERLKAVLKEVEEA------EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKD 327 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~------~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d 327 (900)
.++..+..+.+. ....|++|||+|.|.... .+.|++.++. +..++|.+++... ...
T Consensus 80 ---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a--------q~aL~~~lE~~~~~t~~il~~n~~~-----~i~ 143 (319)
T PLN03025 80 ---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA--------QQALRRTMEIYSNTTRFALACNTSS-----KII 143 (319)
T ss_pred ---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH--------HHHHHHHHhcccCCceEEEEeCCcc-----ccc
Confidence 223333222211 234689999999996543 3477777764 4566777776433 246
Q ss_pred HHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHH
Q 046258 328 AAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVD 396 (900)
Q Consensus 328 ~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld 396 (900)
+.+++|+..+.+..|+.++....++.++++ .++.++++++..++..+.+.+. .++..++
T Consensus 144 ~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDlR------~aln~Lq 202 (319)
T PLN03025 144 EPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDMR------QALNNLQ 202 (319)
T ss_pred hhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHH
Confidence 889999998999999998988888877765 5888999999999998865543 6777776
No 179
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.53 E-value=5.9e-15 Score=144.93 Aligned_cols=122 Identities=25% Similarity=0.405 Sum_probs=88.5
Q ss_pred CCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--------hhcc
Q 046258 181 VIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL--------VAGA 250 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l--------~~g~ 250 (900)
+||.++.++++++.+.+ ..+.||||+|++||||+.+|++||..+.+.+.| |+.+||+.+ ++|.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p-------fi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGP-------FISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS--------EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCC-------eEEEehhhhhcchhhhhhhcc
Confidence 58999999999998877 677899999999999999999999988776666 999999876 3343
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEecCH
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGATTL 317 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~att~ 317 (900)
. .|.+.+.-....+.++.+++|+ ||||||+.|++..|. .|.++++.+ ++|+|++|+.
T Consensus 74 ~-~~~~~~~~~~~~G~l~~A~~Gt-L~Ld~I~~L~~~~Q~--------~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 E-KGAFTGARSDKKGLLEQANGGT-LFLDEIEDLPPELQA--------KLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp C-SSSSTTTSSEBEHHHHHTTTSE-EEEETGGGS-HHHHH--------HHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred c-cccccccccccCCceeeccceE-EeecchhhhHHHHHH--------HHHHHHhhchhccccccccccccceEEeecCc
Confidence 2 2222222111225567778788 999999999876665 888888743 5899999986
Q ss_pred HH
Q 046258 318 EE 319 (900)
Q Consensus 318 ~~ 319 (900)
+.
T Consensus 144 ~l 145 (168)
T PF00158_consen 144 DL 145 (168)
T ss_dssp -H
T ss_pred CH
Confidence 54
No 180
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.8e-14 Score=163.10 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=140.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCC--------------CCCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPS--------------NLADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~--------------~l~~~~~~~ 240 (900)
.+|+++||++..++.|...+....-.|. ||+||+|||||++|+.||+.+....... ......++.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 4678899999999999999988766775 8999999999999999999985432110 000112233
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+. ..+ ...++.+...+.. .++..|+||||+|.|.. ++.|.|++.|+. +.+++|.+|
T Consensus 93 idAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~--------eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 93 VDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR--------SSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH--------HHHHHHHHHHhccCCCeEEEEEC
Confidence 33221 011 1223444433332 23456899999999954 456699999986 678899888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
|.... +.+.+++|+..+.+..++..+....|+.++.. .++.++++++..++..+.+. +++++.++
T Consensus 157 Te~~k-----Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd------~R~ALnLL 221 (944)
T PRK14949 157 TDPQK-----LPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS------MRDALSLT 221 (944)
T ss_pred CCchh-----chHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 76553 56789999999999888898888888777765 46889999999999998554 45899999
Q ss_pred HHHHH
Q 046258 396 DEACA 400 (900)
Q Consensus 396 d~a~a 400 (900)
+.+.+
T Consensus 222 dQala 226 (944)
T PRK14949 222 DQAIA 226 (944)
T ss_pred HHHHH
Confidence 88774
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=1.7e-13 Score=160.73 Aligned_cols=169 Identities=22% Similarity=0.367 Sum_probs=113.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.++||+||||||||++|+++|..+. .+|+.++++++.+. ..|. +...-..++...+....+||||||
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~---~p~i~is~s~f~~~-----~~g~-----~~~~vr~lF~~A~~~~P~ILfIDE 283 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAE---VPFFSISGSEFVEM-----FVGV-----GAARVRDLFKKAKENSPCIVFIDE 283 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CCeeeccHHHHHHH-----hhhh-----hHHHHHHHHHHHhcCCCcEEEEec
Confidence 3799999999999999999999884 49999999886432 1111 111112233444455669999999
Q ss_pred ccccC-----------HH---HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHH
Q 046258 669 VEKAH-----------IS---VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQ 734 (900)
Q Consensus 669 idk~~-----------~~---~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (900)
||.+. .. +++.|+..+|.-. .-.++++|+|||..
T Consensus 284 ID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~---------~~~~ViVIaaTN~~----------------------- 331 (638)
T CHL00176 284 IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK---------GNKGVIVIAATNRV----------------------- 331 (638)
T ss_pred chhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------CCCCeeEEEecCch-----------------------
Confidence 99873 22 3455555555210 12468899999973
Q ss_pred HHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 735 EVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 735 ~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
..++|+|++ |||..+.|.+++.++..+|++.++... . ..++..+..|+.. + +.|..++|++++
T Consensus 332 ---~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-------~---~~~d~~l~~lA~~-t-~G~sgaDL~~lv 396 (638)
T CHL00176 332 ---DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-------K---LSPDVSLELIARR-T-PGFSGADLANLL 396 (638)
T ss_pred ---HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-------c---cchhHHHHHHHhc-C-CCCCHHHHHHHH
Confidence 446788884 999999999999999999999988731 0 1223345555543 2 234466777777
Q ss_pred HHHHH
Q 046258 813 EKKVV 817 (900)
Q Consensus 813 ~~~i~ 817 (900)
.++..
T Consensus 397 neAal 401 (638)
T CHL00176 397 NEAAI 401 (638)
T ss_pred HHHHH
Confidence 65543
No 182
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.2e-14 Score=137.59 Aligned_cols=174 Identities=27% Similarity=0.450 Sum_probs=125.3
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
.++..+..+-+-|++..++.|.+.+... ..|+. +|. .+||+||||||||.||+++|....+ .|++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa---QPK-GvlLygppgtGktLlaraVahht~c---~fir 211 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA---QPK-GVLLYGPPGTGKTLLARAVAHHTDC---TFIR 211 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCC---CCc-ceEEecCCCCchhHHHHHHHhhcce---EEEE
Confidence 3444455566777888888888877542 23444 344 6999999999999999999998855 8999
Q ss_pred ecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeee
Q 046258 622 IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLT 690 (900)
Q Consensus 622 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~ 690 (900)
++.+++.+ +++|. |..--+.|+-..+....+++|.||||.. +.++|..+|++|..-
T Consensus 212 vsgselvq-----k~ige-----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql--- 278 (404)
T KOG0728|consen 212 VSGSELVQ-----KYIGE-----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL--- 278 (404)
T ss_pred echHHHHH-----HHhhh-----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc---
Confidence 99988754 33442 1111134555566667799999999986 456888777776520
Q ss_pred cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHH
Q 046258 691 DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 691 d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
| |.. ...|.-+|++||. ..-++|+|+ +|+|..|.|+|++++...+|++.
T Consensus 279 d--gfe-atknikvimatnr--------------------------idild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 279 D--GFE-ATKNIKVIMATNR--------------------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred c--ccc-cccceEEEEeccc--------------------------cccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 0 100 2357889999997 456789998 69999999999999999999887
Q ss_pred HHHH
Q 046258 769 QMKD 772 (900)
Q Consensus 769 ~l~~ 772 (900)
+-++
T Consensus 330 hsrk 333 (404)
T KOG0728|consen 330 HSRK 333 (404)
T ss_pred hhhh
Confidence 6653
No 183
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.52 E-value=3.7e-14 Score=164.99 Aligned_cols=194 Identities=19% Similarity=0.270 Sum_probs=135.6
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------ 247 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------ 247 (900)
..|+.++|.++.++++++.+.+ ....+|+|+|++||||+++|+++|....+...| |+.+||+.+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~p-------fv~inca~~~~~~~e~ 273 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKP-------FLALNCASIPDDVVES 273 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCC-------eEEeccccCCHHHHHH
Confidence 6789999999999999998875 567789999999999999999999988666556 9999998763
Q ss_pred --hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEE
Q 046258 248 --AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCI 312 (900)
Q Consensus 248 --~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI 312 (900)
+|+. .|.+.+......+.++.+++|+ ||||||+.|++..|. .|.++++++ .+|+|
T Consensus 274 elFG~~-~~~~~~~~~~~~g~~e~a~~Gt-L~LdeI~~L~~~~Q~--------~Ll~~l~~~~~~~~g~~~~~~~~vRiI 343 (520)
T PRK10820 274 ELFGHA-PGAYPNALEGKKGFFEQANGGS-VLLDEIGEMSPRMQA--------KLLRFLNDGTFRRVGEDHEVHVDVRVI 343 (520)
T ss_pred HhcCCC-CCCcCCcccCCCChhhhcCCCE-EEEeChhhCCHHHHH--------HHHHHHhcCCcccCCCCcceeeeeEEE
Confidence 2322 2222221111223345566677 999999999876665 777777654 46899
Q ss_pred EecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHHH----HHHHHHHHhcccC---cccChhHHHHHHHHhhhhcc
Q 046258 313 GATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVSI----LRGLKEKYEGHHG---VRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 313 ~att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~i----lr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~ 383 (900)
++|+.+..... -...+.|..|+..+.+..|+..+|.+- ++.+..++...++ ..++++++..+..+.
T Consensus 344 ~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~----- 418 (520)
T PRK10820 344 CATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG----- 418 (520)
T ss_pred EecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC-----
Confidence 98865432111 112355777888888888988887763 3445555544443 358888888777654
Q ss_pred CCCChhhHHHH
Q 046258 384 GRHLPDKAIDL 394 (900)
Q Consensus 384 ~~~~p~~a~~L 394 (900)
+|.+...|
T Consensus 419 ---WPGNvreL 426 (520)
T PRK10820 419 ---WPGNVRQL 426 (520)
T ss_pred ---CCCHHHHH
Confidence 56555544
No 184
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.51 E-value=4.4e-13 Score=140.09 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=120.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+||+|||||+||+++++.+...+.+++.+++....... .....+.+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF------------------------DFDPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH------------------------hhcccCCEEEEeCh
Confidence 699999999999999999999987767789999987753210 00113579999999
Q ss_pred cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcc-
Q 046258 670 EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRL- 748 (900)
Q Consensus 670 dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~- 748 (900)
+.+++..+..|+.+++... .....++|+|++.++. ...+.++|.+||
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~-----------------------~~~l~~~L~sr~~ 147 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL-----------------------ALPLREDLRTRLG 147 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH-----------------------hCCCCHHHHHHHh
Confidence 9999999999999986411 1123456777765421 233678999998
Q ss_pred -cceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 749 -DEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 749 -~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
...+.++||+.++...++..... .. .+.++++++++|++ .|++| .|.|.++++..
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~-------~~--~v~l~~~al~~L~~-~~~gn--~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAA-------ER--GLQLADEVPDYLLT-HFRRD--MPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHHHHH-hccCC--HHHHHHHHHHH
Confidence 46899999999877776664433 23 37899999999998 79999 99999999874
No 185
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.2e-13 Score=158.80 Aligned_cols=203 Identities=18% Similarity=0.285 Sum_probs=135.0
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---c-e---eEec
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---L-L---VRID 623 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---~-~---i~i~ 623 (900)
++++...+.++||+.+++.+.+++... +-...+||+||+|||||++|+.+|+.+++... + + ..-.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 466777889999999999988887543 22235999999999999999999999977320 0 0 0011
Q ss_pred cccc------cccc--ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeec
Q 046258 624 MSEY------MEQH--SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTD 691 (900)
Q Consensus 624 ~~~~------~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d 691 (900)
|+.. .... .+..+-|. +..|.+....+.+.+. ...+.|+++||+|++....++.|+..|++
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe----- 153 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE----- 153 (620)
T ss_pred CccCHHHHHHhccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----
Confidence 2221 1110 11111111 1112222222333332 23568999999999999999999999997
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
....++||++++. ...+.+.+.+|+ .++.|.+++.+++...+...+.
T Consensus 154 ------Pp~~tv~IL~t~~--------------------------~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 154 ------PPPHAIFIFATTE--------------------------LHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred ------CCCCeEEEEEeCC--------------------------hhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHH
Confidence 2346777777754 345778899999 9999999999999888877666
Q ss_pred HHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 772 DVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
..| +.++++++++|+..+- ++ .|.+.+.++
T Consensus 201 -------~eg--i~I~~eal~~La~~s~-Gd--lr~al~eLe 230 (620)
T PRK14954 201 -------AEG--IQIDADALQLIARKAQ-GS--MRDAQSILD 230 (620)
T ss_pred -------HcC--CCCCHHHHHHHHHHhC-CC--HHHHHHHHH
Confidence 233 5789999999886632 22 555555444
No 186
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2e-13 Score=153.99 Aligned_cols=205 Identities=18% Similarity=0.247 Sum_probs=136.0
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---c----eeEe
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---L----LVRI 622 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---~----~i~i 622 (900)
.++++...+.++||+.+++.+...+... +....+||+||+|||||++|+++|+.+++... + -..-
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~--------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC--------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 3466777888999999999888887643 22235999999999999999999999977310 0 0001
Q ss_pred ccccc------ccc--cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeee
Q 046258 623 DMSEY------MEQ--HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT 690 (900)
Q Consensus 623 ~~~~~------~~~--~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~ 690 (900)
.|+.. ... .....+-|. +..|.+....+.+.+.. .++.|+++||+|+++...++.|+..|++
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~--~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe---- 153 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAA--SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE---- 153 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccc--ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc----
Confidence 12211 100 001111111 11111111222233322 3467999999999999999999999996
Q ss_pred cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 691 DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 691 d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
....++||++++. ...+.+.+.+|+ .++.|.|++.+++..++...+
T Consensus 154 -------p~~~t~~Il~t~~--------------------------~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 154 -------PPPHAIFIFATTE--------------------------LHKIPATIASRC-QRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred -------CCCCeEEEEEeCC--------------------------hHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH
Confidence 2346677777653 245668899999 799999999999988888777
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
. .. .+.++++++++|+..+- ++ .|.+.+.+++
T Consensus 200 ~-------~~--g~~i~~~al~~l~~~s~-g~--lr~a~~~L~k 231 (397)
T PRK14955 200 E-------AE--GISVDADALQLIGRKAQ-GS--MRDAQSILDQ 231 (397)
T ss_pred H-------Hc--CCCCCHHHHHHHHHHcC-CC--HHHHHHHHHH
Confidence 6 23 35799999999987642 33 6666666554
No 187
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.51 E-value=1e-13 Score=143.59 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=137.3
Q ss_pred cCCc-cccChhHHHHHhcHHHHHHH---HHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 546 GIPV-TRLGQNEKERLIGLAEAVNA---VAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 546 ~~~~-~~~~~~~~~~l~g~~~av~~---l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
+.|. +++++...+..+||++.+.+ +...+... .-| +++||||||||||+||+.|+.........||.
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~-------~ip--SmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQN-------RIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcC-------CCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 4453 56777777778888866644 22222222 334 69999999999999999999888665445666
Q ss_pred ecccccccccccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCcee
Q 046258 622 IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 622 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
+....-.. .++ .+.+..+.+ .+...|||+|||++.....|+.||..+++|.
T Consensus 196 lSAt~a~t----~dv------------R~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~--------- 250 (554)
T KOG2028|consen 196 LSATNAKT----NDV------------RDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGD--------- 250 (554)
T ss_pred Eeccccch----HHH------------HHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCc---------
Confidence 65543111 111 112222221 2345899999999999999999999999865
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
+++|.+|+-++ ...+..+|++|| .++.+.+|..+.+..|+.+-+..+.+.-
T Consensus 251 ----I~lIGATTENP------------------------SFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dse 301 (554)
T KOG2028|consen 251 ----ITLIGATTENP------------------------SFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSE 301 (554)
T ss_pred ----eEEEecccCCC------------------------ccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhcccc
Confidence 45777666544 456789999999 9999999999999999998777554321
Q ss_pred Hh-cCC---ccccCHHHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 778 AE-RGV---ALAVTDAALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 778 ~~-~~~---~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
+. .++ .+.+++.++++|+..+ ++. +|---+.++
T Consensus 302 r~~~~l~n~s~~ve~siidyla~ls-dGD--aR~aLN~Le 338 (554)
T KOG2028|consen 302 RPTDPLPNSSMFVEDSIIDYLAYLS-DGD--ARAALNALE 338 (554)
T ss_pred ccCCCCCCcchhhhHHHHHHHHHhc-Cch--HHHHHHHHH
Confidence 11 022 2468999999999653 333 665555553
No 188
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=3.5e-13 Score=140.91 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=120.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||+|||||++|+++++.+.....+++.++|+.+.... ..+ ...+. ..++|+|||
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~----------------~~~~~--~~~lLvIDd 98 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--PEV----------------LEGLE--QADLVCLDD 98 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--HHH----------------Hhhcc--cCCEEEEeC
Confidence 3799999999999999999999987666789999998865321 011 11111 236999999
Q ss_pred ccccCHH--HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAHIS--VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~~~--~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
++.++.. .+..|..+++... ..+..+|+|++..+..+ ....+.|.+
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~----------------------~~~~~~L~~ 146 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL----------------------PLRLPDLRT 146 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC----------------------CcccHHHHH
Confidence 9999874 4888888886421 02235778888654221 122378888
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 747 RLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 747 R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
|+. ..+.++||+.+++..+++.++. .. .+.++++++++|+. .|++| .|+|.++++..-
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~-------~~--~~~~~~~~l~~L~~-~~~gn--~r~L~~~l~~~~ 206 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAA-------RR--GLQLPDEVADYLLR-HGSRD--MGSLMALLDALD 206 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHHHHH-hccCC--HHHHHHHHHHHH
Confidence 884 5889999999999998876554 22 36799999999998 59999 999999997633
No 189
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.5e-13 Score=158.04 Aligned_cols=195 Identities=21% Similarity=0.245 Sum_probs=140.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~ 240 (900)
.+|+++||++..++.|...+......|. ||+||+|||||++|+.+|+.+........ . ....++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 4688899999999999999988666674 89999999999999999999855321100 0 0012444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .+ .+.++.+.+.+.. .++..|+||||+|.|.. .+.|.|+..|+. +.+++|.+|
T Consensus 93 idaas~------~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------~a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 93 IDAASR------TK--VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred eccccc------CC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------HHHHHHHHHHHcCCCCeEEEEec
Confidence 443210 11 1234444444332 23456899999999964 356789999986 678888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
|... .+.+.+++|+..+.+..++.++....|+.+... .++.++++++..++..+.+. +.++..++
T Consensus 157 t~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs------~R~Al~ll 221 (647)
T PRK07994 157 TDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS------MRDALSLT 221 (647)
T ss_pred CCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 7554 256789999998999888888888888777655 36788999999999988555 45899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.+.+.
T Consensus 222 dqaia~ 227 (647)
T PRK07994 222 DQAIAS 227 (647)
T ss_pred HHHHHh
Confidence 887654
No 190
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4e-13 Score=155.95 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=138.5
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMS 625 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~ 625 (900)
++++.....++||+.++..+...+... +....+||+||+|+|||++|+++|+.+.+... ++-.+ +|-
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 456677888999999999999998653 22235999999999999999999999976321 21111 111
Q ss_pred cccccc--ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 626 EYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 626 ~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.... ++..+-|.. ..+.+....+.+.+. ..++.|+++||+++++...++.|+..|++ ..
T Consensus 81 ~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp 147 (563)
T PRK06647 81 SIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PP 147 (563)
T ss_pred HHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CC
Confidence 111110 111111110 011111112222222 24568999999999999999999999996 33
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++++. ...+.+.+.+|| ..+.|.+++.+++.+++...+. .
T Consensus 148 ~~~vfI~~tte--------------------------~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~-------~ 193 (563)
T PRK06647 148 PYIVFIFATTE--------------------------VHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCL-------E 193 (563)
T ss_pred CCEEEEEecCC--------------------------hHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHH-------H
Confidence 57888887754 234778999999 7899999999999888876665 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.| +.++++++.+|++.. .+. .|.+.+.+++.
T Consensus 194 eg--i~id~eAl~lLa~~s-~Gd--lR~alslLdkl 224 (563)
T PRK06647 194 DQ--IKYEDEALKWIAYKS-TGS--VRDAYTLFDQV 224 (563)
T ss_pred cC--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHH
Confidence 33 578999999999753 333 77777777643
No 191
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=3.2e-13 Score=140.13 Aligned_cols=102 Identities=26% Similarity=0.462 Sum_probs=82.7
Q ss_pred eEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
+|||+||++.++-+.+..|.+.|++ ++. .++|++||.|...+-..... + -..+|
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEs-----------e~a-PIii~AtNRG~~kiRGTd~~--s------------PhGIP 346 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALES-----------ELA-PIIILATNRGMTKIRGTDIE--S------------PHGIP 346 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhc-----------ccC-cEEEEEcCCceeeecccCCc--C------------CCCCC
Confidence 3899999999999999999999996 333 67899999986544321100 0 24689
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCC
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESY 799 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 799 (900)
.+|++|+ .+|...||+.++++.|++.... +. .+.++++|+++|...+-
T Consensus 347 ~DlLDRl-lII~t~py~~~EireIi~iRa~-------ee--~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 347 LDLLDRL-LIISTRPYSREEIREIIRIRAK-------EE--DIELSDDALEYLTDIGE 394 (450)
T ss_pred Hhhhhhe-eEEecCCCCHHHHHHHHHHhhh-------hh--ccccCHHHHHHHHhhch
Confidence 9999999 9999999999999999998776 33 47999999999998765
No 192
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=3.9e-13 Score=155.68 Aligned_cols=193 Identities=24% Similarity=0.308 Sum_probs=138.8
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.++++.....++|++.++..+...+..+..| +|..++||+||||||||++|+++|+.+. ..++.+|++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEccccccc
Confidence 6778888889999999999999999887533 2234799999999999999999999994 4788999887654
Q ss_pred ccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCH----HHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHI----SVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~----~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
...+..+++....+ ..+. ..++.||+|||+|.++. ..++.|+..++. .++.||
T Consensus 78 ~~~i~~~i~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-------------~~~~iI 134 (482)
T PRK04195 78 ADVIERVAGEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKK-------------AKQPII 134 (482)
T ss_pred HHHHHHHHHHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHc-------------CCCCEE
Confidence 33333333321110 0111 02568999999999876 568889999985 234577
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccH-HHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP-ELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVAL 784 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~ 784 (900)
+++|.. ..+.+ .+.+|+ ..|.|.+++.+++..++...+. ..| +
T Consensus 135 li~n~~--------------------------~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~-------~eg--i 178 (482)
T PRK04195 135 LTANDP--------------------------YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICR-------KEG--I 178 (482)
T ss_pred EeccCc--------------------------cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHH-------HcC--C
Confidence 788763 12334 677888 8899999999999998887776 333 5
Q ss_pred ccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 785 AVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 785 ~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
.+++++++.|+..+- ++ .|.+.+.+
T Consensus 179 ~i~~eaL~~Ia~~s~-GD--lR~ain~L 203 (482)
T PRK04195 179 ECDDEALKEIAERSG-GD--LRSAINDL 203 (482)
T ss_pred CCCHHHHHHHHHHcC-CC--HHHHHHHH
Confidence 789999999997642 22 44444444
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.50 E-value=2.9e-13 Score=157.42 Aligned_cols=166 Identities=25% Similarity=0.326 Sum_probs=113.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCC---CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGL---GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~---~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
..+.+.|++.+...+.+.+...+... .....+..++||+||||||||++|++||..+. .+|+.++++++.+.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~~~-- 127 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VPFFSISGSDFVEM-- 127 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CCeeeccHHHHHHH--
Confidence 34567888876666665544221100 00122233699999999999999999999884 48999998876432
Q ss_pred cccccCCCCCCccccc--ccchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecCCCce
Q 046258 633 VSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
|+|... -..++...+....+||||||||.+.+ .+++.|+..||.-.
T Consensus 128 ----------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-------- 189 (495)
T TIGR01241 128 ----------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------- 189 (495)
T ss_pred ----------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc--------
Confidence 222211 12233444445568999999988632 24566777776311
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
...+++||+|||.+ ..++|+|++ |||..|.+++++.++..+|++.++.
T Consensus 190 -~~~~v~vI~aTn~~--------------------------~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 190 -TNTGVIVIAATNRP--------------------------DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred -CCCCeEEEEecCCh--------------------------hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 12458899999983 557889985 9999999999999999999998876
No 194
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.49 E-value=7e-14 Score=134.20 Aligned_cols=128 Identities=34% Similarity=0.538 Sum_probs=88.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCC---CCcccccccchhHHHHhCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPP---GYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~---g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
++||+||||||||++|+.+|+.+ ..+++.+.|+..++. .+|+|... +...+.. +.+..+++ .+.+++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeeccccccccc-cccccccc--ceeEEEE
Confidence 48999999999999999999999 459999999885443 45555422 1111111 33444444 5789999
Q ss_pred ccccccCHHHHHHHHHHhhCCeeecCC-CceeecC-------CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHh
Q 046258 667 DEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDFR-------NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRK 738 (900)
Q Consensus 667 DEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~~-------~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (900)
|||+++++++++.|+++++++++.-.. +...... +.+||+|+|... .. ..
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---~~-------------------~~ 129 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---KG-------------------RK 129 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST------------------------TT
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---CC-------------------cC
Confidence 999999999999999999998876333 3333332 489999999864 11 45
Q ss_pred cccHHHHhcc
Q 046258 739 HFRPELLNRL 748 (900)
Q Consensus 739 ~~~~~ll~R~ 748 (900)
.++++|++||
T Consensus 130 ~l~~al~~Rf 139 (139)
T PF07728_consen 130 ELSPALLDRF 139 (139)
T ss_dssp TTCHHHHTT-
T ss_pred cCCHHHHhhC
Confidence 7899999997
No 195
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.2e-13 Score=150.40 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=143.7
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCC-CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKN-NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|+++||++..++.+...+...... +.||+||+||||||+|+.+|+.+.....|.. -.+..+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 46888999999999998888765444 6999999999999999999998855433321 12345677
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.++-. | .+.++.+++.+... ....|++|||+|.|.. .+.|.|+..+++ +.+++|.+|
T Consensus 90 idaas~~------~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 90 IDAASNT------S--VDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred EecccCC------C--HHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------HHHHHHHHHHhCCCCCeEEEEEe
Confidence 7664321 1 22355555554422 3356899999999854 356788888885 567778777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+.... ..+.+.+|+..+.+..++..+....++.+..+ .++.++++++..++..+.+. +..+..++
T Consensus 154 te~~K-----l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gs------lR~alslL 218 (491)
T PRK14964 154 TEVKK-----IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGS------MRNALFLL 218 (491)
T ss_pred CChHH-----HHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 64332 45789999999999888888888888777766 57889999999999988544 34788899
Q ss_pred HHHHHHh
Q 046258 396 DEACANV 402 (900)
Q Consensus 396 d~a~a~~ 402 (900)
+.++.+.
T Consensus 219 dqli~y~ 225 (491)
T PRK14964 219 EQAAIYS 225 (491)
T ss_pred HHHHHhc
Confidence 8888654
No 196
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.49 E-value=2.6e-13 Score=128.76 Aligned_cols=120 Identities=26% Similarity=0.470 Sum_probs=95.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchh
Q 046258 203 PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIH 282 (900)
Q Consensus 203 vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~ 282 (900)
+||+||||||||++|+.+|+.+ +.+++.++++.+.. .+.++....+..++..+.....++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELIS--SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHHT--SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------cccccccccccccc--ccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 77899999999884 45788899999999988766547899999999
Q ss_pred hhhhCCCCCC---hhhHHHhHhhhhh-----cCcEEEEEecCHHHHHHHhhccHHHH-cccce-eee
Q 046258 283 LVLGAGRTEG---SMDAANLFKPMLA-----RGQLRCIGATTLEEYRKYVEKDAAFE-RRFQQ-VYV 339 (900)
Q Consensus 283 ~l~~~~~~~~---~~~~~~~L~~~l~-----~g~irvI~att~~~~~~~~~~d~al~-~Rf~~-i~i 339 (900)
.+.+..+... .....+.|...+. .+.+.+|++|+..+ ..++.+. +||+. +++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEc
Confidence 9998762212 2334556655554 24689999998744 4899999 99985 554
No 197
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.1e-14 Score=141.94 Aligned_cols=162 Identities=25% Similarity=0.384 Sum_probs=127.1
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+++.+-|-...++.+.+.+.- ..+..++||||||+|||.+|+++|..+ ++.|+.+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeH
Confidence 456677777888888886642 344458999999999999999999998 888999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC---hhhHHHhHhhhh-------hcCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG---SMDAANLFKPML-------ARGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l-------~~g~irvI~ 313 (900)
+++.. +|.|+....++..+..+.+.- +||||+||||.+.+..-+.+ +..+...|-.++ ..+++.+|.
T Consensus 200 s~lv~--kyiGEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 200 SALVD--KYIGESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred hhhhh--hhcccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 99987 578999999999999988765 79999999999987654422 333443443333 357899999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHH
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKE 356 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~ 356 (900)
|||+... ++|+|.| |++. ++++.|+...+..|++....
T Consensus 277 atNrpdt-----LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 277 ATNRPDT-----LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred ecCCccc-----cchhhcCCccccceeccCCcchhhceeeEeeccc
Confidence 9998875 8999999 8876 77888888777776654333
No 198
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.9e-13 Score=150.98 Aligned_cols=183 Identities=20% Similarity=0.328 Sum_probs=135.1
Q ss_pred CCCCchHHHHHHHHHHcc-----C-CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-----hh
Q 046258 180 PVIGRDEEIRRVVRILSR-----R-TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL-----VA 248 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~-----~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l-----~~ 248 (900)
+-.|-++...|+++.|.- . .++=+||+||||||||+++++||+.+ |.+|+.+.++.+ +.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 468899999999998752 2 22336889999999999999999999 788999998876 45
Q ss_pred ccc--ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh---c--------------CcE
Q 046258 249 GAK--YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA---R--------------GQL 309 (900)
Q Consensus 249 g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~--------------g~i 309 (900)
|++ |.|...+++-.-+..+...+ |+ ++|||||.|..+-++ |-+..|+.+|. + ..+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N-Pv-~LLDEIDKm~ss~rG----DPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN-PV-FLLDEIDKMGSSFRG----DPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC-Ce-EEeechhhccCCCCC----ChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 665 77888887766666555433 55 999999999776544 22335555553 1 247
Q ss_pred EEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHH-HHHHHHhcccC-----cccChhHHHHHHHHhhhhcc
Q 046258 310 RCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILR-GLKEKYEGHHG-----VRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 310 rvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr-~l~~~~~~~~~-----v~i~~eal~~l~~~s~~~~~ 383 (900)
-+|+|.|.-+. +...|+.|+++|++.-++..|..+|.+ .+..+.-+.++ +.++++++..+.+...|-..
T Consensus 468 mFiaTANsl~t-----IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 468 MFIATANSLDT-----IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred EEEeecCcccc-----CChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 78887775542 789999999999999999999999884 45555444455 44889999888876644433
No 199
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.48 E-value=5e-13 Score=158.94 Aligned_cols=198 Identities=23% Similarity=0.330 Sum_probs=139.0
Q ss_pred CCCCCCCchHHHHHHHHHHc---c---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILS---R---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.++++.|.+....++.+++. . ..+.+++|+||||||||++|++++..+ +.+|+.++++
T Consensus 150 ~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~ 219 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGS 219 (644)
T ss_pred cHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehH
Confidence 44556777666655555432 1 235679999999999999999999987 6669999988
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChh---hHHHhHhhhhh----cCcEEEEEe
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSM---DAANLFKPMLA----RGQLRCIGA 314 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~---~~~~~L~~~l~----~g~irvI~a 314 (900)
.+.. .+.|.....++.++..+.... |+||||||+|.+...+.. ++.. ...|.|+..|+ +..+.+|++
T Consensus 220 ~~~~--~~~g~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 220 DFVE--MFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HhHH--hhhcccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 7765 356666778888888776554 889999999999865543 1222 23344444343 446899999
Q ss_pred cCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhH
Q 046258 315 TTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
||+.+. +|+++.| ||+. |.++.|+..+|.+||+.+..+...... + .+..++..+.+| .+++.
T Consensus 297 TN~p~~-----lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~--~---d~~~la~~t~G~-----sgadl 361 (644)
T PRK10733 297 TNRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--I---DAAIIARGTPGF-----SGADL 361 (644)
T ss_pred cCChhh-----cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc--C---CHHHHHhhCCCC-----CHHHH
Confidence 998875 8999998 9975 889999999999999887765321111 1 123455555444 45588
Q ss_pred HHHHHHHHHHh
Q 046258 392 IDLVDEACANV 402 (900)
Q Consensus 392 ~~Lld~a~a~~ 402 (900)
..++.+|+...
T Consensus 362 ~~l~~eAa~~a 372 (644)
T PRK10733 362 ANLVNEAALFA 372 (644)
T ss_pred HHHHHHHHHHH
Confidence 88888877543
No 200
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=5.7e-13 Score=148.17 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=112.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCC-CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc------cc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQ-PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY------ME 629 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~-p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~------~~ 629 (900)
++.|+||+.+++.+.+.+...+........ ....+||+||+|+|||++|+.+|+.+.+.... .-.|+.. ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 467999999999999999876432221112 22469999999999999999999999774321 0122221 10
Q ss_pred c-cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEE
Q 046258 630 Q-HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVI 704 (900)
Q Consensus 630 ~-~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~i 704 (900)
. |.--.++......++.+..+.+.+.+.. .++.|+||||+|++.+..+|.|++.|++. ..+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep-----------~~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP-----------PPRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC-----------CCCCeE
Confidence 0 0000011110011222222333343333 34579999999999999999999999972 245666
Q ss_pred EEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHH
Q 046258 705 IMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR 767 (900)
Q Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~ 767 (900)
|++|+. ...+.|.+++|| ..+.|.|++.+++.+++.
T Consensus 151 IL~a~~--------------------------~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 151 LLCAPS--------------------------PEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEECC--------------------------hHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 666665 245789999999 899999999999877665
No 201
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.48 E-value=1.3e-12 Score=141.81 Aligned_cols=232 Identities=19% Similarity=0.166 Sum_probs=136.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC------CCCceeEeccc----c
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD------DENLLVRIDMS----E 626 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~----~ 626 (900)
...++||+.+++.+.-++... ..+++||.||||||||++|++++..+.. ..-.+.++.+. +
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 467899999888777554211 2358999999999999999999999842 00011111110 0
Q ss_pred ---------------cccccccccccCCCCCCccc-cccc--chhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCe
Q 046258 627 ---------------YMEQHSVSRLIGAPPGYVGH-EEGG--QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGR 688 (900)
Q Consensus 627 ---------------~~~~~~~~~l~G~~~g~~g~-~~~~--~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~ 688 (900)
+....+...++|... +-.. ..|+ .-.+.+..+.+++||+|||+.+++.+|+.|+++|++|.
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d-~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALD-IERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchh-hhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 000011122444200 0000 0000 11122334566899999999999999999999999987
Q ss_pred eec-CCCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH-HHHHHH
Q 046258 689 LTD-GQGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH-EQLRKV 765 (900)
Q Consensus 689 ~~d-~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~-e~~~~I 765 (900)
++- ..|....+ ..+++|+|+|.. ...++++|++||...+.+.+++. ++..+|
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~-------------------------e~~l~~aLldRF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPE-------------------------EGELRPQLLDRFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCcc-------------------------cCCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 431 12222222 467888888863 34589999999988888877666 777777
Q ss_pred HHHHHHH------HH-----------HHH---HhcCCccccCHHHHHHHHHcCCC-CCCCchHHHHHHHHHHHHHHHHHH
Q 046258 766 ARLQMKD------VA-----------IRL---AERGVALAVTDAALDIVLAESYD-PIYGARPIRRWLEKKVVTELSRML 824 (900)
Q Consensus 766 ~~~~l~~------~~-----------~~~---~~~~~~~~~~~~a~~~l~~~~~~-~~~g~R~L~~~i~~~i~~~l~~~i 824 (900)
+.+.... +. .++ .+.=-.+.+++++++++++.... +.-|.|.-.. .+...-+.++
T Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~----l~~aA~a~A~ 287 (334)
T PRK13407 212 IRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT----LLRAARALAA 287 (334)
T ss_pred HHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH----HHHHHHHHHH
Confidence 7764321 00 111 11111378999999999876432 2224444333 3334444455
Q ss_pred Hcc
Q 046258 825 VRE 827 (900)
Q Consensus 825 ~~~ 827 (900)
+.|
T Consensus 288 l~G 290 (334)
T PRK13407 288 FEG 290 (334)
T ss_pred HcC
Confidence 554
No 202
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.48 E-value=1.2e-12 Score=136.71 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCCCCC-C-chHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccc
Q 046258 177 KLDPVI-G-RDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRG 254 (900)
Q Consensus 177 ~~~~~i-G-~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g 254 (900)
+|++++ | ....+..+.++.......+++|+||||||||++++++++..... +..+.++++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----- 87 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAWF----- 87 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhhh-----
Confidence 345554 4 44556666665555566789999999999999999999987543 344666666543221
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHccc
Q 046258 255 EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRF 334 (900)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf 334 (900)
...+.+.+.+. .+|+|||++.+.+..+ ....+.+.+....++|..++|++++.... ......|.|++|+
T Consensus 88 -----~~~~~~~~~~~---dlliiDdi~~~~~~~~--~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl 156 (235)
T PRK08084 88 -----VPEVLEGMEQL---SLVCIDNIECIAGDEL--WEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRL 156 (235)
T ss_pred -----hHHHHHHhhhC---CEEEEeChhhhcCCHH--HHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHH
Confidence 11222333332 3699999999864322 23345667777888888788888864432 2222579999999
Q ss_pred ---ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 335 ---QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 335 ---~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
..+.+..|+.+++.++++..... .++.++++++.+++....+.+.
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREMR 204 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCHH
Confidence 46888899999999998765543 4788999999999998865543
No 203
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.48 E-value=5e-13 Score=162.90 Aligned_cols=178 Identities=20% Similarity=0.324 Sum_probs=125.5
Q ss_pred CCCCchHHHHHHHHHHcc------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-----h
Q 046258 180 PVIGRDEEIRRVVRILSR------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-----A 248 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-----~ 248 (900)
.++|++...+++.+.+.. ..+.++||+||||||||++|++||..+ +.+++.++++... .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 488999999998886642 134469999999999999999999998 6668888776432 1
Q ss_pred c--ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc-----------------CcE
Q 046258 249 G--AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR-----------------GQL 309 (900)
Q Consensus 249 g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------g~i 309 (900)
| ..|.|...+++...+..+.. ..+ |+||||||.+.+..+. +..+.|+++++. +.+
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~-~~~-villDEidk~~~~~~~----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKT-KNP-LFLLDEIDKIGSSFRG----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCc-CCC-EEEEechhhcCCccCC----CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 1 23556555666555554432 224 6999999999864332 223455554431 357
Q ss_pred EEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHH-HHHhccc-----CcccChhHHHHHHHHh
Q 046258 310 RCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLK-EKYEGHH-----GVRIQDRALVVAAQLS 378 (900)
Q Consensus 310 rvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~-~~~~~~~-----~v~i~~eal~~l~~~s 378 (900)
.+|+|||... ..+++|++||.+|.++.|+.+++.+|++... .+....+ ++.++++++..++...
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYY 534 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhc
Confidence 8888888754 3799999999989999999999999996543 3332222 3568999998887743
No 204
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.48 E-value=5.3e-13 Score=161.40 Aligned_cols=196 Identities=18% Similarity=0.300 Sum_probs=137.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------ 247 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------ 247 (900)
..+++++|+++.++++++.+.+ ....||||+||+|||||++|++||....+.+.| |+.+||..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~-------~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRR-------MVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCC-------eEEEecccCChhHhhh
Confidence 4677899999999999888875 566789999999999999999999988665555 9999998763
Q ss_pred --hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEE
Q 046258 248 --AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCI 312 (900)
Q Consensus 248 --~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI 312 (900)
+|+. .|.+.+......+.++.+++|+ ||||||+.|....|. .|..+++.+ .+|+|
T Consensus 446 ~lfg~~-~~~~~g~~~~~~g~le~a~~Gt-L~Ldei~~L~~~~Q~--------~L~~~l~~~~~~~~g~~~~~~~~~RiI 515 (686)
T PRK15429 446 DLFGHE-RGAFTGASAQRIGRFELADKSS-LFLDEVGDMPLELQP--------KLLRVLQEQEFERLGSNKIIQTDVRLI 515 (686)
T ss_pred hhcCcc-cccccccccchhhHHHhcCCCe-EEEechhhCCHHHHH--------HHHHHHHhCCEEeCCCCCcccceEEEE
Confidence 2332 2333333333344556667676 999999999776655 777777543 46999
Q ss_pred EecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhcccC--c-ccChhHHHHHHHHhhhhcc
Q 046258 313 GATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHHG--V-RIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 313 ~att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~~--v-~i~~eal~~l~~~s~~~~~ 383 (900)
++|+.+..... -.....|..|+..+.+..|+..+|.+-+ +.+..++...++ + .++++++..+..+.
T Consensus 516 ~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~----- 590 (686)
T PRK15429 516 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNME----- 590 (686)
T ss_pred EeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC-----
Confidence 99976542221 1123446668888889999998887744 455555544333 2 37899988887765
Q ss_pred CCCChhhHHHHHH
Q 046258 384 GRHLPDKAIDLVD 396 (900)
Q Consensus 384 ~~~~p~~a~~Lld 396 (900)
+|.+...|-.
T Consensus 591 ---WPGNvrEL~~ 600 (686)
T PRK15429 591 ---WPGNVRELEN 600 (686)
T ss_pred ---CCCcHHHHHH
Confidence 5656655443
No 205
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.47 E-value=6.7e-14 Score=133.88 Aligned_cols=137 Identities=22% Similarity=0.342 Sum_probs=104.6
Q ss_pred hcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCC
Q 046258 561 IGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAP 640 (900)
Q Consensus 561 ~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~ 640 (900)
+|.+.+++.+.+.+.+.. ....+++|+|++||||+++|++|+........+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a-------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHh-------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 467788999999998883 2223599999999999999999999988877889999987642
Q ss_pred CCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccC
Q 046258 641 PGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM 720 (900)
Q Consensus 641 ~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 720 (900)
.+.+....+++|+|+|||.++++.|..|++.|+... -.++++|+||+.+.+.+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh---
Confidence 234445578999999999999999999999998521 2567999999998876655
Q ss_pred CccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCC
Q 046258 721 GKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPL 757 (900)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl 757 (900)
...|.++|+.||+. .|.++||
T Consensus 117 ----------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 ----------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp ----------------HSTHHHHHHHHCSTCEEEE---
T ss_pred ----------------ccchhHHHHHHhCCCEEeCCCC
Confidence 67899999999975 4555554
No 206
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=4e-13 Score=154.57 Aligned_cols=195 Identities=21% Similarity=0.227 Sum_probs=139.5
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--------------~~~~~~~ 240 (900)
.+|++++|++..++.+...+......| .||+||+|||||++|+.+|+.+.....+... ....+++
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 467889999999999999998866666 5899999999999999999998543222100 1123566
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.++- .| .+.++.+++.+.. .+...|+||||+|.|.. ++.|.|+..|+. ..+++|.+|
T Consensus 93 idaas~------~~--v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 93 VDAASR------TK--VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------HSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred Eccccc------CC--HHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------HHHHHHHHHHhccCCCeEEEEEE
Confidence 654321 11 1224444444332 13346899999999964 346688888886 467788777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+.... +.+.+.+|+..+.+..++..+....++.+... .++.++++++..++..+.+. +.++..++
T Consensus 157 td~~k-----l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs------lR~al~lL 221 (509)
T PRK14958 157 TDHHK-----LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS------VRDALSLL 221 (509)
T ss_pred CChHh-----chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHHHH
Confidence 64432 45679999998888888888877777777765 57889999999999888543 55899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.++++
T Consensus 222 dq~ia~ 227 (509)
T PRK14958 222 DQSIAY 227 (509)
T ss_pred HHHHhc
Confidence 988765
No 207
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=1.3e-12 Score=144.16 Aligned_cols=191 Identities=23% Similarity=0.383 Sum_probs=135.8
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEeccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMSEY 627 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~ 627 (900)
+++++...+.++|++.+++.+...+... ..| +++|+||||||||++|+.+++.+.+... .++.++++..
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------NMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------CCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 6778888888999999999888887532 233 5899999999999999999999876432 3444443321
Q ss_pred ccccccccccCCCCCCcccccccchhHHHHh-----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCe
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNT 702 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~ 702 (900)
...... ...+.+.... .+..||+|||++.++.+.++.|++.++.. ..++
T Consensus 80 ~~~~~~---------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-----------~~~~ 133 (319)
T PRK00440 80 RGIDVI---------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQNT 133 (319)
T ss_pred cchHHH---------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-----------CCCC
Confidence 100000 0111122221 23569999999999999999999999852 2356
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
.+|+++|.. ..+.+++.+|+ ..+.|.|++.+++..++...+. ..|
T Consensus 134 ~lIl~~~~~--------------------------~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~-------~~~- 178 (319)
T PRK00440 134 RFILSCNYS--------------------------SKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAE-------NEG- 178 (319)
T ss_pred eEEEEeCCc--------------------------cccchhHHHHh-heeeeCCCCHHHHHHHHHHHHH-------HcC-
Confidence 788888753 34567788999 6799999999999999888776 233
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
+.++++++++|+..+ .++ .|.+.+.++.
T Consensus 179 -~~i~~~al~~l~~~~-~gd--~r~~~~~l~~ 206 (319)
T PRK00440 179 -IEITDDALEAIYYVS-EGD--MRKAINALQA 206 (319)
T ss_pred -CCCCHHHHHHHHHHc-CCC--HHHHHHHHHH
Confidence 578999999999763 333 6666666654
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.47 E-value=3.3e-14 Score=141.01 Aligned_cols=183 Identities=26% Similarity=0.325 Sum_probs=77.3
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccc---
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR--- 635 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~--- 635 (900)
.|+||+.+.+.+.-+. +|. .++||+||||||||++|+.++..|-. +-.-.+-+...-.+++.
T Consensus 4 dI~GQe~aKrAL~iAA----aG~-------h~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAA----AGG-------HHLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CSSSTHHHHHHHHHHH----HCC---------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---S-
T ss_pred hhcCcHHHHHHHHHHH----cCC-------CCeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhccccccccCCC
Confidence 3678886666555444 331 37999999999999999999988732 11111111111111110
Q ss_pred ---ccCCCC-----------CCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCC-Cceee-c
Q 046258 636 ---LIGAPP-----------GYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVD-F 699 (900)
Q Consensus 636 ---l~G~~~-----------g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~-~ 699 (900)
++..+| +.+|... ....+.+..+.++||||||+..+++.+++.|++.|++|+++-.. |..+. .
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~P 147 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYP 147 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEe
Confidence 111110 0001000 11223455678899999999999999999999999999876433 44443 3
Q ss_pred CCeEEEEccCCCcHHHhcccCC-ccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMG-KVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQ 761 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~ 761 (900)
.++++|+|+|..+.-. .+ ....+.+...-...+.++++.+|++|||..+..++++.++
T Consensus 148 a~f~lv~a~NPcpCG~----~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 148 ARFLLVAAMNPCPCGY----YGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp --EEEEEEE-S----------------------------------------------------
T ss_pred cccEEEEEeccccccc----cccccccccccccccccccccccccccccccccccccccccCC
Confidence 5899999999976322 22 2345667777777888999999999999999988877653
No 209
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.6e-13 Score=151.04 Aligned_cols=195 Identities=21% Similarity=0.247 Sum_probs=138.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~ 240 (900)
..|++++|++..++.+...+......| +||+||+|||||++|+.+|+.+........ . ....++.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 467889999999999999998766556 789999999999999999998854211100 0 0123455
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| .+.++.+++.+. ..++..|+||||+|.|.. .+.|.|+..|++ +.+.+|.+|
T Consensus 93 idaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 93 IDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred eecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------HHHHHHHHHHhcCCCCceEEEEE
Confidence 543221 11 112334444333 223456899999999854 355689999987 467788777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... .+.+.+++|+..+.+..++..+....++.+..+ .++.++++++..++..+.+. ..++..++
T Consensus 157 td~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd------lR~alnlL 221 (546)
T PRK14957 157 TDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS------LRDALSLL 221 (546)
T ss_pred CChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 6432 245679999999999999888888777777666 46889999999999998544 34888999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+++.
T Consensus 222 ek~i~~ 227 (546)
T PRK14957 222 DQAISF 227 (546)
T ss_pred HHHHHh
Confidence 988765
No 210
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.47 E-value=1.2e-12 Score=141.98 Aligned_cols=221 Identities=16% Similarity=0.157 Sum_probs=134.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC----Ccee------------
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLV------------ 620 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i------------ 620 (900)
...++||+++...+..++.. ...+.+||.||+|||||++||.+++.+...+ .+|.
T Consensus 16 f~~ivGq~~~k~al~~~~~~---------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~ 86 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVID---------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDE 86 (350)
T ss_pred HHHHhChHHHHHHHHHhccC---------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchh
Confidence 56799999888777776532 2346899999999999999999999986421 2232
Q ss_pred ----------------EecccccccccccccccCCC---CCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHH
Q 046258 621 ----------------RIDMSEYMEQHSVSRLIGAP---PGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLL 681 (900)
Q Consensus 621 ----------------~i~~~~~~~~~~~~~l~G~~---~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll 681 (900)
.+.|..+.......+++|.- ....+. ....-.+.+.++.+++||+|||+.+++.+|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g-~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 87 VREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEG-VKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcC-cccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 00000111111122333310 000000 0000112334556799999999999999999999
Q ss_pred HHhhCCeeec-CCCceee-cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC-
Q 046258 682 QVLDDGRLTD-GQGRTVD-FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS- 758 (900)
Q Consensus 682 ~~ld~g~~~d-~~g~~~~-~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~- 758 (900)
++|++|..+- ..|.... ..++++|+|.|.. ...|+++|++||...+.+.+++
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~-------------------------eg~l~~~LldRf~l~i~l~~~~~ 220 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPE-------------------------EGELRPQLLDRFGMHAEIRTVKD 220 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-------------------------cCCCCHHHHHHhCceeecCCCCC
Confidence 9999875431 1122222 2367788888864 3469999999999888898876
Q ss_pred HHHHHHHHHHHHHHH-----------------HHHH---HhcCCccccCHHHHHHHHHcCCC-CCCCchHHHHHH
Q 046258 759 HEQLRKVARLQMKDV-----------------AIRL---AERGVALAVTDAALDIVLAESYD-PIYGARPIRRWL 812 (900)
Q Consensus 759 ~e~~~~I~~~~l~~~-----------------~~~~---~~~~~~~~~~~~a~~~l~~~~~~-~~~g~R~L~~~i 812 (900)
.++-.+|+++..... ...+ .+.=-.+.+++++++++++.+.. +.-|-|.-..++
T Consensus 221 ~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ 295 (350)
T CHL00081 221 PELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTN 295 (350)
T ss_pred hHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHH
Confidence 477777877643210 0111 11111478999999999876432 223444443333
No 211
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.47 E-value=9.6e-13 Score=147.56 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=136.0
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc---
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY--- 627 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~--- 627 (900)
+.++.....++|++.+++.+...+... +....+||+||||+|||++|+.+++.+.+.... ..-.|+..
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~-~~~~c~~c~~c 77 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP-DGEPCNECESC 77 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCHHH
Confidence 456667788999999999999888543 222368999999999999999999999763211 00112111
Q ss_pred ---ccc--cccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 628 ---MEQ--HSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 628 ---~~~--~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
... ..+..+-|. +..+.+....+.+.+.. .++.|+++||+|.++...++.|+..+++ .
T Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~ 144 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAA--SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------P 144 (355)
T ss_pred HHHhcCCCCCEEEeecc--ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------C
Confidence 000 000111110 01111111123333332 2457999999999999999999999986 2
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
..+++||+++|. ...+.+.+.+|+ ..+.|.|++.+++..++...+.
T Consensus 145 ~~~~~lIl~~~~--------------------------~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~------- 190 (355)
T TIGR02397 145 PEHVVFILATTE--------------------------PHKIPATILSRC-QRFDFKRIPLEDIVERLKKILD------- 190 (355)
T ss_pred ccceeEEEEeCC--------------------------HHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHH-------
Confidence 246778887764 234567889999 7899999999999999888876
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
..| +.++++++.+|+... .++ .|.+.+.+++..
T Consensus 191 ~~g--~~i~~~a~~~l~~~~-~g~--~~~a~~~lekl~ 223 (355)
T TIGR02397 191 KEG--IKIEDEALELIARAA-DGS--LRDALSLLDQLI 223 (355)
T ss_pred HcC--CCCCHHHHHHHHHHc-CCC--hHHHHHHHHHHH
Confidence 334 478999999999763 233 666766665543
No 212
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1e-12 Score=154.47 Aligned_cols=205 Identities=20% Similarity=0.337 Sum_probs=138.6
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-----ceeEe-c
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-----LLVRI-D 623 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-----~~i~i-~ 623 (900)
.++++...+.++||+.+++.+...+... +....+||+||+|+|||++|+.+|+.+.+... ++-.+ +
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 3566777889999999999999888643 22235899999999999999999999975211 11100 1
Q ss_pred cccccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCcee
Q 046258 624 MSEYMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 624 ~~~~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
|..+.+.. .+..+-|. +..+.+....+.+.+.. ..+.|++|||++.++...++.|+..|++
T Consensus 81 C~~~~~~~~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe----------- 147 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE----------- 147 (614)
T ss_pred HHHHhcCCCCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------
Confidence 11121111 11112111 11111111112222222 2467999999999999999999999997
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
...+++||++|+. ...+.+.+.+|| .++.|.+++.+++..++...+.
T Consensus 148 pp~~tifIL~tt~--------------------------~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~------ 194 (614)
T PRK14971 148 PPSYAIFILATTE--------------------------KHKILPTILSRC-QIFDFNRIQVADIVNHLQYVAS------ 194 (614)
T ss_pred CCCCeEEEEEeCC--------------------------chhchHHHHhhh-heeecCCCCHHHHHHHHHHHHH------
Confidence 2356788888864 456788999999 8899999999999988877666
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
..| +.++++++++|+..+ .+. .|.+.+.++.
T Consensus 195 -~eg--i~i~~~al~~La~~s-~gd--lr~al~~Lek 225 (614)
T PRK14971 195 -KEG--ITAEPEALNVIAQKA-DGG--MRDALSIFDQ 225 (614)
T ss_pred -HcC--CCCCHHHHHHHHHHc-CCC--HHHHHHHHHH
Confidence 344 578999999998764 233 6666665544
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.46 E-value=9.9e-14 Score=125.83 Aligned_cols=126 Identities=30% Similarity=0.403 Sum_probs=73.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC--CCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR--PYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~--~~~vlllD 667 (900)
|+||.|+||+|||++|+++|+.+.. .|.+|.|.. ....++++|.+- |. ... +.+ . ++.. -..|+|+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~---~f~RIq~tp---dllPsDi~G~~v-~~-~~~-~~f-~-~~~GPif~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL---SFKRIQFTP---DLLPSDILGFPV-YD-QET-GEF-E-FRPGPIFTNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-----EEEEE--T---T--HHHHHEEEE-EE-TTT-TEE-E-EEE-TT-SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC---ceeEEEecC---CCCcccceeeee-ec-cCC-Cee-E-eecChhhhceeeec
Confidence 6899999999999999999999965 788998753 344466777531 11 100 110 0 0011 13699999
Q ss_pred cccccCHHHHHHHHHHhhCCeeecCCCceeecCC-eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 668 EVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRN-TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 668 Eidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~-~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
||++++|.+|++||++|++++++-. |..+.+.+ .++|+|.|.-. .- . ...++.++++
T Consensus 70 EiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp~e-~~-G-------------------ty~Lpea~~D 127 (131)
T PF07726_consen 70 EINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNPVE-QE-G-------------------TYPLPEAQLD 127 (131)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-TT---S--------------------------HHHHT
T ss_pred ccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCccc-cC-c-------------------eecCCHHHhc
Confidence 9999999999999999999988743 44445554 67888888631 10 0 3457889999
Q ss_pred cc
Q 046258 747 RL 748 (900)
Q Consensus 747 R~ 748 (900)
||
T Consensus 128 RF 129 (131)
T PF07726_consen 128 RF 129 (131)
T ss_dssp TS
T ss_pred cc
Confidence 98
No 214
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.45 E-value=9.5e-13 Score=144.97 Aligned_cols=175 Identities=16% Similarity=0.257 Sum_probs=123.7
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEE-EcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVL-IGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL-~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
++++++|++.....+...+.+...+|++| +||||+|||++|+++++.+ +..++.++++. . . ...
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~--~--~-~~~ 83 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD--C--R-IDF 83 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc--c--c-HHH
Confidence 56779999999999999988766566666 8999999999999999987 44578888765 1 1 112
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~al~~R 333 (900)
....+...........++.||||||+|.+.. .++.+.|+.+++. +..++|.+++... ...+.+++|
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~-----~l~~~l~sR 151 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN-----GIIEPLRSR 151 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh-----hchHHHHhh
Confidence 2222222222221123466899999988721 1233466666663 5678888886543 367899999
Q ss_pred cceeeecCCChHHHHHHHHHHHHHHhc---ccCcccChhHHHHHHHHh
Q 046258 334 FQQVYVAEPSVPDTVSILRGLKEKYEG---HHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 334 f~~i~i~~P~~~e~~~ilr~l~~~~~~---~~~v~i~~eal~~l~~~s 378 (900)
|..+.++.|+..++.++++.+..++.. ..++.++++++..++..+
T Consensus 152 ~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~ 199 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKN 199 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc
Confidence 998999899999999888776665532 356778999988888765
No 215
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.45 E-value=1.5e-12 Score=154.82 Aligned_cols=214 Identities=18% Similarity=0.187 Sum_probs=135.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhc------------------------
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLF------------------------ 613 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~------------------------ 613 (900)
..|+||+.++..+.-++.. + ..+++||.||+|||||++|++|+..+.
T Consensus 4 ~~ivGq~~~~~al~~~av~-------~--~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~ 74 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVD-------P--RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEEC 74 (633)
T ss_pred chhcChHHHHHHHHHHhhC-------C--CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhh
Confidence 4689999887666544421 1 236799999999999999999999982
Q ss_pred --------CCCCceeEecccccccccccccccCCCCC----CcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHH
Q 046258 614 --------DDENLLVRIDMSEYMEQHSVSRLIGAPPG----YVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLL 681 (900)
Q Consensus 614 --------~~~~~~i~i~~~~~~~~~~~~~l~G~~~g----~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll 681 (900)
....+|+.+.++. ....|+|.-.- ..|.. ..-.+.+..+.++|||||||+++++.+|+.|+
T Consensus 75 ~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll 147 (633)
T TIGR02442 75 RRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL 147 (633)
T ss_pred hhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHHH
Confidence 1124566655543 12345553100 00000 00122344557789999999999999999999
Q ss_pred HHhhCCeee--cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC-
Q 046258 682 QVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS- 758 (900)
Q Consensus 682 ~~ld~g~~~--d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~- 758 (900)
++|++|.++ ..........++++|+|+|.. ...|+++|++||+..|...++.
T Consensus 148 ~~le~g~~~v~r~g~~~~~~~~~~lIat~np~-------------------------eg~l~~~L~dR~~l~i~v~~~~~ 202 (633)
T TIGR02442 148 DAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-------------------------EGDLRPQLLDRFGLCVDVAAPRD 202 (633)
T ss_pred HHHhcCCEEEEECCceeeecCCeEEEEecCCC-------------------------CCCCCHHHHhhcceEEEccCCCc
Confidence 999999543 222222222578999999963 3458999999998777777754
Q ss_pred HHHHHHHHHHHHH----------HH-------HHHH---HhcCCccccCHHHHHHHHHcCCCCCC-CchHHHHHH
Q 046258 759 HEQLRKVARLQMK----------DV-------AIRL---AERGVALAVTDAALDIVLAESYDPIY-GARPIRRWL 812 (900)
Q Consensus 759 ~e~~~~I~~~~l~----------~~-------~~~~---~~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~L~~~i 812 (900)
.++..+|+.+.+. .+ ...+ ...--.+.++++++++|+..+...+. |.|....++
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~ 277 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMA 277 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 4666666655332 00 0110 01111368899999999987655443 455554444
No 216
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=145.85 Aligned_cols=202 Identities=20% Similarity=0.349 Sum_probs=135.7
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.++++...+.++|++.+++.+.+.+... +...++||+||||+|||++|+++++.+.+.... -.+..+.
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~---~~~~~~~- 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYD---DPNEDFS- 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---CCCCCCC-
Confidence 3566677788999999999988888643 222379999999999999999999998752110 0000000
Q ss_pred ccccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
...-++ ...+..+.+....+.+.+.. .++.||++||++.++...++.|+..+++ ...+++||
T Consensus 77 -~~~~~l--~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~I 142 (367)
T PRK14970 77 -FNIFEL--DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIFI 142 (367)
T ss_pred -cceEEe--ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEEE
Confidence 000000 00001111111112222221 2457999999999999999999999986 22457788
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
++++. ...+.+++.+|+ .++.|.+++++++..++...+. ..| +.
T Consensus 143 l~~~~--------------------------~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~-------~~g--~~ 186 (367)
T PRK14970 143 LATTE--------------------------KHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAV-------KEG--IK 186 (367)
T ss_pred EEeCC--------------------------cccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHH-------HcC--CC
Confidence 77764 355778999999 7899999999999988887776 343 57
Q ss_pred cCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 786 VTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 786 ~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
++++++++|+... .+ +.|.+.+.++..+
T Consensus 187 i~~~al~~l~~~~-~g--dlr~~~~~lekl~ 214 (367)
T PRK14970 187 FEDDALHIIAQKA-DG--ALRDALSIFDRVV 214 (367)
T ss_pred CCHHHHHHHHHhC-CC--CHHHHHHHHHHHH
Confidence 8999999999763 23 3777777776543
No 217
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=9.7e-13 Score=155.21 Aligned_cols=207 Identities=20% Similarity=0.294 Sum_probs=135.6
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-----ceeEec-
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-----LLVRID- 623 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-----~~i~i~- 623 (900)
.++++...+.++||+.+++.+...+... +....+||+||+|+|||++|+.+|+.+++... ++-.++
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 4567777889999999999998888653 22235799999999999999999999975221 111000
Q ss_pred ccccccccccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 624 MSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 624 ~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
|..+........+.-...+..+.+..+.+.+.+.. ..+.|++|||+|+++.+.++.|+..|++- .
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-----------p 148 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------P 148 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-----------C
Confidence 11111110000000000011222222223333332 34689999999999999999999999972 2
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||++++. ...+.+.+.+|+ ..+.|.+++..++..++...+. .
T Consensus 149 ~~tv~Il~t~~--------------------------~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~-------~ 194 (585)
T PRK14950 149 PHAIFILATTE--------------------------VHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAA-------A 194 (585)
T ss_pred CCeEEEEEeCC--------------------------hhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHH-------H
Confidence 46777777754 234667889999 7899999999999888877665 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
.| +.++++++..|+...- ++ .|.+.+.+++
T Consensus 195 eg--l~i~~eal~~La~~s~-Gd--lr~al~~Lek 224 (585)
T PRK14950 195 EG--INLEPGALEAIARAAT-GS--MRDAENLLQQ 224 (585)
T ss_pred cC--CCCCHHHHHHHHHHcC-CC--HHHHHHHHHH
Confidence 33 4688999998886532 33 6666666654
No 218
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.45 E-value=4.4e-11 Score=147.26 Aligned_cols=182 Identities=20% Similarity=0.309 Sum_probs=116.8
Q ss_pred CCCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc
Q 046258 179 DPVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g 249 (900)
..++|++.+++.+...+.+. +..++||+||||||||++|++||..+.....+ ++.+||+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~-------~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDA-------MVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------EEEEechhhccc
Confidence 45899999999999988751 12348899999999999999999998665444 899999875321
Q ss_pred c----------cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc----------E
Q 046258 250 A----------KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ----------L 309 (900)
Q Consensus 250 ~----------~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------i 309 (900)
+ .|.|.-+. ..+...+.. .+..|||||||+.+. .++.+.|+++++.|. +
T Consensus 638 ~~~~~l~g~~~g~~g~~~~--g~l~~~v~~-~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEG--GQLTEAVRR-KPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccc--cHHHHHHHc-CCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 1 11111110 112222333 346789999998664 445669999997663 3
Q ss_pred E---EEEecCHHHH--HH-------------H-----hhccHHHHcccceee-ecCCChHHHHHHHHHHHHH----Hhc-
Q 046258 310 R---CIGATTLEEY--RK-------------Y-----VEKDAAFERRFQQVY-VAEPSVPDTVSILRGLKEK----YEG- 360 (900)
Q Consensus 310 r---vI~att~~~~--~~-------------~-----~~~d~al~~Rf~~i~-i~~P~~~e~~~ilr~l~~~----~~~- 360 (900)
+ +|.+||...- .. + -.-.|.|..|++.|. +.+++.++...|+...... +..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 7888765211 00 0 012477888997655 4555666777776554443 222
Q ss_pred ccCcccChhHHHHHHHHh
Q 046258 361 HHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 361 ~~~v~i~~eal~~l~~~s 378 (900)
...+.++++++..++...
T Consensus 787 ~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 787 KITLELSDAALDFLAEAG 804 (852)
T ss_pred CCeecCCHHHHHHHHHhC
Confidence 123568899999888753
No 219
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.7e-12 Score=148.30 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccC-CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCC----CC--------------CCCCc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRR-TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDV----PS--------------NLADV 236 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~~----p~--------------~l~~~ 236 (900)
.+|++++|++..++.+...+... ...++||+||+|||||++|+.+|+.+..... |. .....
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 46788999999999998866653 4557899999999999999999999854321 00 00112
Q ss_pred EEEEEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEE
Q 046258 237 RLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRC 311 (900)
Q Consensus 237 ~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irv 311 (900)
.++++|.++- . ....++.+++.+... +...|+||||+|.|.. .+.+.|+..+++ ..+++
T Consensus 98 Dv~eidaas~------~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 98 DIIEIDAASK------T--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------GAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred cEEEeeccCC------C--CHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------HHHHHHHHHHhhcCCCEEE
Confidence 3444443221 1 123455555555432 3356899999999853 345678888875 46777
Q ss_pred EEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhH
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
|.+|+.... ..+.+.+|+..+.+..++..+...+++.+.++ .++.++++++..++..+.+. +.++
T Consensus 162 I~aTte~~k-----I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gs------lR~a 226 (507)
T PRK06645 162 IFATTEVQK-----IPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGS------ARDA 226 (507)
T ss_pred EEEeCChHH-----hhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHH
Confidence 777765432 56789999998999889999988888877775 57889999999999988544 4589
Q ss_pred HHHHHHHHHHh
Q 046258 392 IDLVDEACANV 402 (900)
Q Consensus 392 ~~Lld~a~a~~ 402 (900)
..++|.+++..
T Consensus 227 l~~Ldkai~~~ 237 (507)
T PRK06645 227 VSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 220
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.45 E-value=3.3e-13 Score=148.79 Aligned_cols=159 Identities=31% Similarity=0.372 Sum_probs=107.5
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCC
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGA 639 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~ 639 (900)
++|.+..+..+..++... +++||.||||||||++|+.+|+.+.. +|+++.|...... ++++|.
T Consensus 26 ~~g~~~~~~~~l~a~~~~-----------~~vll~G~PG~gKT~la~~lA~~l~~---~~~~i~~t~~l~p---~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLAG-----------GHVLLEGPPGVGKTLLARALARALGL---PFVRIQCTPDLLP---SDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHcC-----------CCEEEECCCCccHHHHHHHHHHHhCC---CeEEEecCCCCCH---HHhcCc
Confidence 455555555555555322 36999999999999999999999964 9999999875443 556664
Q ss_pred CCCC--------cccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecC-CeEEEEccCC
Q 046258 640 PPGY--------VGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFR-NTVIIMTSNL 710 (900)
Q Consensus 640 ~~g~--------~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~-~~~iI~tsn~ 710 (900)
..-. .-+.. |.++...+ +++|+|||+++++.+++.|+++|++++++...-.++... ..++|+|+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~-gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 89 YAYAALLLEPGEFRFVP-GPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred hhHhhhhccCCeEEEec-CCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc
Confidence 2111 11111 22222222 699999999999999999999999998886442213333 4677888885
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQ 761 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~ 761 (900)
....- ...++.++++||...+.+.++..++
T Consensus 164 ~e~~g---------------------~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 164 GEYEG---------------------TYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred cccCC---------------------CcCCCHHHHhhEEEEEecCCCCchH
Confidence 32110 3557999999997666777763433
No 221
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.1e-12 Score=149.71 Aligned_cols=195 Identities=18% Similarity=0.234 Sum_probs=140.9
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC----------------CCCcEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN----------------LADVRL 238 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~----------------l~~~~~ 238 (900)
.+|++++|++..++.|...+......| .||+||+|||||++|+.+|+.+.....+.. -....+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 467889999999999999998877777 589999999999999999998864322210 012345
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEE
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIG 313 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~ 313 (900)
+.+|.++.. | ...++.+.+.+.. .....|+||||+|.|.. .+.|.|+..|+. +.+++|.
T Consensus 90 ieidaas~~------g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------~A~NALLK~LEEpp~~~~fIL 153 (584)
T PRK14952 90 VELDAASHG------G--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------AGFNALLKIVEEPPEHLIFIF 153 (584)
T ss_pred EEecccccc------C--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------HHHHHHHHHHhcCCCCeEEEE
Confidence 555543211 1 1223333333322 23356899999999954 366789999986 5788888
Q ss_pred ecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 314 ATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+|+... ...+.+++|++.+.+..++..+....++.+++. .++.++++++..++..+.+. +.++..
T Consensus 154 ~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gd------lR~aln 218 (584)
T PRK14952 154 ATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGS------PRDTLS 218 (584)
T ss_pred EeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 876553 256889999999999888888888788777765 47789999999998887443 447889
Q ss_pred HHHHHHHH
Q 046258 394 LVDEACAN 401 (900)
Q Consensus 394 Lld~a~a~ 401 (900)
++|..++.
T Consensus 219 ~Ldql~~~ 226 (584)
T PRK14952 219 VLDQLLAG 226 (584)
T ss_pred HHHHHHhc
Confidence 99987764
No 222
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9e-13 Score=147.68 Aligned_cols=179 Identities=19% Similarity=0.352 Sum_probs=130.9
Q ss_pred CCCCCchHHHHHHHHHHcc----C--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-----h
Q 046258 179 DPVIGRDEEIRRVVRILSR----R--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL-----V 247 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l-----~ 247 (900)
++-.|.++..+++++.+.- . .+.=++|+||||+|||+++++||+.+ |.+|+.++.+.+ +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 4578999999999998863 1 22237889999999999999999999 888999998876 3
Q ss_pred hccc--ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-----------------cCc
Q 046258 248 AGAK--YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-----------------RGQ 308 (900)
Q Consensus 248 ~g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~g~ 308 (900)
.|++ |.|...+++-+.++.+...+ |. ++|||||.+-..-++ |-+..|+.+|. =.+
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~N-Pl-iLiDEvDKlG~g~qG----DPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTEN-PL-ILIDEVDKLGSGHQG----DPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCC-ce-EEeehhhhhCCCCCC----ChHHHHHHhcChhhccchhhhccccccchhh
Confidence 4555 77888877777666665433 55 999999999733332 22335555542 125
Q ss_pred EEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHH-HHHHHHhcccC-----cccChhHHHHHHHHh
Q 046258 309 LRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILR-GLKEKYEGHHG-----VRIQDRALVVAAQLS 378 (900)
Q Consensus 309 irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr-~l~~~~~~~~~-----v~i~~eal~~l~~~s 378 (900)
+-+|++.|.-+. +.+.|+.|+++|++.-+..+|...|-+ .+..+-...++ +.++++++..+....
T Consensus 555 VLFicTAN~idt-----IP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 555 VLFICTANVIDT-----IPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred eEEEEecccccc-----CChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 778888876654 789999999999999999999999884 44555444555 447777776665543
No 223
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.2e-12 Score=145.91 Aligned_cols=195 Identities=21% Similarity=0.212 Sum_probs=136.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~ 240 (900)
.+|++++|++..++.+...+......| +||+||+|||||++|+.+|+.+.....+.. . ....++.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 467889999999999999888765556 589999999999999999998853211100 0 0012344
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
++.+.- .....++.+...+... +...|+||||+|.+.. .+.|.|+..++. +.+++|.+|
T Consensus 93 ~~~~~~--------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 93 IDAASR--------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred eccccc--------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------HHHHHHHHHHhcCCCCeEEEEEc
Confidence 432210 0112344554444322 2345899999998853 345577777774 567777777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|+..+.+..++.++...+++...+. .++.++++++..++..+.+ -+..+..++
T Consensus 157 ~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G------~~R~al~~l 221 (363)
T PRK14961 157 TDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHG------SMRDALNLL 221 (363)
T ss_pred CChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHH
Confidence 5443 256789999998999999999988888877766 4678999999999988843 355788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+++.
T Consensus 222 ~~~~~~ 227 (363)
T PRK14961 222 EHAINL 227 (363)
T ss_pred HHHHHh
Confidence 887754
No 224
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.4e-12 Score=153.26 Aligned_cols=205 Identities=19% Similarity=0.293 Sum_probs=134.6
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCc-eeEecccc--
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENL-LVRIDMSE-- 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~-~i~i~~~~-- 626 (900)
.++++.....++|++.++..+...+...+ -+ .++||+||+|+|||++|+++|+.+++.... ...-.|+.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~r-------l~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNR-------IA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCC-------CC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 34566677889999999999888886531 11 269999999999999999999999873210 00011221
Q ss_pred ----ccccc--ccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCce
Q 046258 627 ----YMEQH--SVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 627 ----~~~~~--~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
+.... ++-.+-+ ....+.+..+.+.+.+.. ..+.|++|||+|+++...++.||..|++
T Consensus 80 ~C~~i~~g~h~D~~ei~~--~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe---------- 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA--ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE---------- 147 (620)
T ss_pred HHHHHhcCCCccEEEEec--cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc----------
Confidence 10000 0000100 011122111222222222 3468999999999999999999999996
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
...+++||++|+. ...+.+.+.+|| ..+.|.+++.+++...+...+.
T Consensus 148 -Pp~~tvfIL~t~~--------------------------~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~----- 194 (620)
T PRK14948 148 -PPPRVVFVLATTD--------------------------PQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAE----- 194 (620)
T ss_pred -CCcCeEEEEEeCC--------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHH-----
Confidence 3356788887764 234678999999 8899999999988777666554
Q ss_pred HHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 777 LAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 777 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
+.| +.++++++..|+...- + +.|...+.++.
T Consensus 195 --keg--i~is~~al~~La~~s~-G--~lr~A~~lLek 225 (620)
T PRK14948 195 --KES--IEIEPEALTLVAQRSQ-G--GLRDAESLLDQ 225 (620)
T ss_pred --HhC--CCCCHHHHHHHHHHcC-C--CHHHHHHHHHH
Confidence 222 4688899888887642 2 35666666654
No 225
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1e-12 Score=152.72 Aligned_cols=195 Identities=21% Similarity=0.256 Sum_probs=137.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCC---------CC----------CCCC
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDV---------PS----------NLAD 235 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~---------p~----------~l~~ 235 (900)
.+|+++||++..++.|...+......|. ||+||+|||||++|+.+|+.+..... |- .-..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 4678899999999999999988766665 89999999999999999999854210 00 0001
Q ss_pred cEEEEEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEE
Q 046258 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLR 310 (900)
Q Consensus 236 ~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~ir 310 (900)
..++.+|.+.- .| .+.++.+++.+... ++..|+||||+|.|... ..|.|+..+++ +.+.
T Consensus 93 ~D~~eldaas~------~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 93 VDYTELDAASN------RG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------AFNAMLKTLEEPPEYLK 156 (618)
T ss_pred CceeecCcccc------cC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------HHHHHHHhcccCCCCeE
Confidence 13444443211 11 12344444443321 23468999999998643 45688888875 4577
Q ss_pred EEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+|.+|+.... +.+.+++|+..+.+..++.++....++.+..+ .++.++++++..++..+.+. +.+
T Consensus 157 fIL~Ttd~~k-----il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gs------lR~ 221 (618)
T PRK14951 157 FVLATTDPQK-----VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGS------MRD 221 (618)
T ss_pred EEEEECCchh-----hhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHH
Confidence 7777764432 45679999999999888888888888776665 57889999999999988554 447
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
+..++|.++++
T Consensus 222 al~lLdq~ia~ 232 (618)
T PRK14951 222 ALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHHh
Confidence 88888887765
No 226
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.44 E-value=8e-13 Score=162.94 Aligned_cols=191 Identities=15% Similarity=0.210 Sum_probs=121.2
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc----cccc-cC----------------------
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS----VSRL-IG---------------------- 638 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~----~~~l-~G---------------------- 638 (900)
+|...+||+||||||||.|||++|...+ .||+.++++++.+... ...+ +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~---VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY---VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC---CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 3445799999999999999999999984 4999999998874320 0000 01
Q ss_pred --CCCCCcccccc----cchhHHHHhCCCeEEEEccccccCHH-----HHHHHHHHhhCCeeecCCCceeecCCeEEEEc
Q 046258 639 --APPGYVGHEEG----GQLTEAVRRRPYSVVLFDEVEKAHIS-----VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMT 707 (900)
Q Consensus 639 --~~~g~~g~~~~----~~l~~~~~~~~~~vlllDEidk~~~~-----~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~t 707 (900)
...++.+..++ +.+.+.+++...|||+|||||.+... .++.|+..|+..... ....+++||+|
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAA 1778 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIAS 1778 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEe
Confidence 01122233222 22455666667799999999998753 367788888742100 12357899999
Q ss_pred cCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 708 SNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 708 sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
||.+ ..++|+|+. |||..|.+..++..+..+++...+. ..|+.+.
T Consensus 1779 TNRP--------------------------D~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~-------tkg~~L~ 1825 (2281)
T CHL00206 1779 THIP--------------------------QKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY-------TRGFHLE 1825 (2281)
T ss_pred CCCc--------------------------ccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHh-------hcCCCCC
Confidence 9985 568999995 9999999988877666666654332 1222221
Q ss_pred cCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 786 VTDAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 786 ~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
-+..-++.+++. ++.|.+++|..++..++.-++
T Consensus 1826 ~~~vdl~~LA~~--T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1826 KKMFHTNGFGSI--TMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred cccccHHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 111113444432 345556777777765554433
No 227
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=4.8e-12 Score=152.27 Aligned_cols=195 Identities=17% Similarity=0.218 Sum_probs=137.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC----------------CCcEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL----------------ADVRL 238 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l----------------~~~~~ 238 (900)
.+|+++||++..++.|...+.....+| +||+||+|||||++|+.||+.+.....+... .+..|
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 467789999999999999998877777 6899999999999999999998643222100 12334
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEE
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIG 313 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~ 313 (900)
+.+|..... | .+.++.+...+. ......|+||||+|.|.. ...|.|+.+|++ ..+++|.
T Consensus 92 ~eidaas~~------~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 92 TEIDAASHG------G--VDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------QGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred EEecccccC------C--HHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------HHHHHHHHHHhCCCCCeEEEE
Confidence 555432211 1 122333333222 123456899999999964 456799999986 5677787
Q ss_pred ecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 314 ATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+|+..+. +-+.+++|+..+.|..++..+...+|+.++.. .++.++++++..++..+.+.+ ..+..
T Consensus 156 ~tt~~~k-----Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdl------R~Al~ 220 (824)
T PRK07764 156 ATTEPDK-----VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSV------RDSLS 220 (824)
T ss_pred EeCChhh-----hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 7765432 45789999999999888888877777766655 578899999999988885443 37778
Q ss_pred HHHHHHHH
Q 046258 394 LVDEACAN 401 (900)
Q Consensus 394 Lld~a~a~ 401 (900)
++|..++.
T Consensus 221 eLEKLia~ 228 (824)
T PRK07764 221 VLDQLLAG 228 (824)
T ss_pred HHHHHHhh
Confidence 88877644
No 228
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=1e-12 Score=139.76 Aligned_cols=170 Identities=18% Similarity=0.293 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH----H
Q 046258 185 DEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE----E 258 (900)
Q Consensus 185 ~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~----~ 258 (900)
++.++++++.+.+ ....+++|+||||||||++|+.+|+.+ +.+++.++|..-.......|.+. .
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchh
Confidence 3445555554433 356799999999999999999999876 56699988764321111111110 0
Q ss_pred -HHHHHH----------------HH-HHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------
Q 046258 259 -RLKAVL----------------KE-VEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------------- 307 (900)
Q Consensus 259 -~l~~~~----------------~~-~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 307 (900)
.+.... +. ......|.+|+|||++.+.++ ..+.|+.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~--------~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPE--------TNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHH--------HHHHHHHHhcCCeEEccCCCCCCce
Confidence 000000 00 111122457999999887654 344777777532
Q ss_pred -----cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 308 -----QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 308 -----~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
.+++|+++|+..+....+.+++|.+||..+.++.|+.++..+|++... .++++....++.+....
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~ 215 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREF 215 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHH
Confidence 468999999876655555689999999889999999888888876421 24566666666665443
No 229
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-12 Score=151.43 Aligned_cols=166 Identities=23% Similarity=0.359 Sum_probs=118.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCC---CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGL---GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~---~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 634 (900)
..+-|.++|.+.|.+-+.-..... ....++...+||+||||||||.|||++|-+. +-||+.++.++|.+..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE~~--- 384 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVEMF--- 384 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHHHh---
Confidence 345566666655555544321100 0012333479999999999999999999877 5599999999987631
Q ss_pred cccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCH---------------HHHHHHHHHhhCCeeecCCCceeec
Q 046258 635 RLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHI---------------SVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~---------------~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.| +|....+.++...+....|++|+||||.... ..+|.||.-||. .. ..
T Consensus 385 --~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-f~-------~~- 448 (774)
T KOG0731|consen 385 --VG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-FE-------TS- 448 (774)
T ss_pred --cc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-Cc-------CC-
Confidence 11 2333335567777777779999999986532 256777777773 21 12
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
.+++|+++||.+ +-++++|+ +|||..|....++.....+|++.++.
T Consensus 449 ~~vi~~a~tnr~--------------------------d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 449 KGVIVLAATNRP--------------------------DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLR 496 (774)
T ss_pred CcEEEEeccCCc--------------------------cccCHHhcCCCccccceeccCCchhhhHHHHHHHhh
Confidence 579999999984 55789998 69999999999999999999999887
No 230
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.43 E-value=5.6e-12 Score=144.16 Aligned_cols=247 Identities=19% Similarity=0.196 Sum_probs=144.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc----
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS---- 632 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~---- 632 (900)
...++||+.+++.+.-++ .+..+++|.||||||||++|+.++..+.... .-..+++..+.....
T Consensus 191 ~~dv~Gq~~~~~al~~aa-----------~~g~~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAA-----------AGGHNLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWSLVGKLID 258 (499)
T ss_pred HHHhcCcHHHHhhhhhhc-----------cCCCEEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEeccccccchhhhcc
Confidence 355788887765554443 1223799999999999999999998764321 112233222211000
Q ss_pred ccccc----------CCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeee--cCCCceeecC
Q 046258 633 VSRLI----------GAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT--DGQGRTVDFR 700 (900)
Q Consensus 633 ~~~l~----------G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~--d~~g~~~~~~ 700 (900)
...+. ....+.+|.. ...-.+.+..+.++||||||++.+++.+++.|++.|+++.++ ...+......
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred ccccccCCccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 00000 0000111100 001233556678899999999999999999999999999865 2222223335
Q ss_pred CeEEEEccCCCcHHHhcccCCc-cchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHH---------HHHHHH
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGK-VTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRK---------VARLQM 770 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~---------I~~~~l 770 (900)
++.+|+++|..+. +.++. ...+.+...-...+...++.+|++|||.++.+++++.+++.+ +-++..
T Consensus 338 ~frlIaa~Npcpc----g~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~ 413 (499)
T TIGR00368 338 RFQLVAAMNPCPC----GHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVI 413 (499)
T ss_pred CeEEEEecCCccc----CcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHH
Confidence 8899999998642 11111 223444444445667889999999999999999987765422 222221
Q ss_pred H---HHHHHHHhc---CCc-----------cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHH
Q 046258 771 K---DVAIRLAER---GVA-----------LAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSR 822 (900)
Q Consensus 771 ~---~~~~~~~~~---~~~-----------~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~ 822 (900)
. ...+++... .+. ..+++++.+.|....-..+.++|...++++ +.+.+++
T Consensus 414 ~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAd 480 (499)
T TIGR00368 414 KAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIAD 480 (499)
T ss_pred HHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHh
Confidence 1 111222211 011 245677777766554445678999998884 4444554
No 231
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.3e-12 Score=148.58 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=133.7
Q ss_pred CCCCCCCCchHHHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.|...+.... ...+||+||+|||||++|+.||+.+.....+.. -....++.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 467889999999999988887644 566889999999999999999999854221100 00122445
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHH
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLE 318 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~ 318 (900)
+|...-. .... ...+...+..........|+||||+|.|.. +..|.|+..|+. +.+++|.+|+..
T Consensus 93 Id~a~~~----~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 93 IDGASNR----GIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------EAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred Eeccccc----CHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCH--------HHHHHHHHHhhccCCCEEEEEecCCh
Confidence 5432110 0111 112222222222223456899999999953 345688888875 577888877654
Q ss_pred HHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
.. ..+.+.+|+..+.+..++..+...+|+.++.+ .++.++++++..++.++.+. ..+++.+++.+
T Consensus 160 ~k-----ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gd------lR~Al~lLeql 224 (624)
T PRK14959 160 HK-----FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGS------VRDSMSLLGQV 224 (624)
T ss_pred hh-----hhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 32 34678999998999888888888888776654 57789999999999988544 34788888866
Q ss_pred H
Q 046258 399 C 399 (900)
Q Consensus 399 ~ 399 (900)
+
T Consensus 225 l 225 (624)
T PRK14959 225 L 225 (624)
T ss_pred H
Confidence 4
No 232
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-12 Score=137.57 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=115.8
Q ss_pred CCCCCCCCchHHHHHHHHHHc--c------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh
Q 046258 176 GKLDPVIGRDEEIRRVVRILS--R------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV 247 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~--~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~ 247 (900)
..|+.+|=.-.--+++.++.. . ..-.|||||||||||||++|+.||+.+ |..+-.+-.+++.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA 421 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA 421 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc
Confidence 446666655444444444332 1 223579999999999999999999987 4444333222211
Q ss_pred hcccccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHH-HhHhhhh-----hcCcEEEEEecCHHHH
Q 046258 248 AGAKYRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAA-NLFKPML-----ARGQLRCIGATTLEEY 320 (900)
Q Consensus 248 ~g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~-~~L~~~l-----~~g~irvI~att~~~~ 320 (900)
..| +-...++.+|+.++.+..|.+|||||+|.++-.+...+-.++. ..|..+| +...+.++.+||++..
T Consensus 422 ----PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 422 ----PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred ----ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 112 3445788999999999999999999999998766553332222 2222222 3457888899988764
Q ss_pred HHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhc
Q 046258 321 RKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEG 360 (900)
Q Consensus 321 ~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~ 360 (900)
.|.+...|++. |+|+.|..+||..+|+.+.++|..
T Consensus 498 -----lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 498 -----LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred -----hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 79999999975 889999999999999988888753
No 233
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.43 E-value=6.4e-13 Score=156.82 Aligned_cols=201 Identities=21% Similarity=0.282 Sum_probs=133.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc-----
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA----- 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~----- 250 (900)
.+|++++|++..++++++.+......+++|+||||||||++|+.++...........-.+.+|+.+||..+....
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 678899999999999998887777778999999999999999999987643221111124569999987652100
Q ss_pred cccchHH----HHHHHH----------HHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC---------
Q 046258 251 KYRGEFE----ERLKAV----------LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------- 307 (900)
Q Consensus 251 ~~~g~~~----~~l~~~----------~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------- 307 (900)
...|... ...+.. .+.+....+| +|||||++.|....|. .|..+++++
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG-vL~LDEi~~Ld~~~Q~--------~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG-VLFIDEIGELDPLLQN--------KLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCC-eEEEeccccCCHHHHH--------HHHHHHhhCeEEeeccee
Confidence 0011100 000110 1112233444 5999999988665443 555555432
Q ss_pred ---------------------cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCccc
Q 046258 308 ---------------------QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRI 366 (900)
Q Consensus 308 ---------------------~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i 366 (900)
.+++|++|++... ..+++|++||..+.+..++.++...|++..+.+ .++.+
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~----~~v~l 373 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK----INVHL 373 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH----cCCCC
Confidence 3677777766442 368899999998888778888999999887765 35668
Q ss_pred ChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 367 QDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 367 ~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
+++++..+..++. +. .+++..+..++.
T Consensus 374 s~eal~~L~~ys~---~g----Rraln~L~~~~~ 400 (615)
T TIGR02903 374 AAGVEELIARYTI---EG----RKAVNILADVYG 400 (615)
T ss_pred CHHHHHHHHHCCC---cH----HHHHHHHHHHHH
Confidence 8988888887652 11 255555555543
No 234
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.43 E-value=1e-12 Score=139.36 Aligned_cols=102 Identities=25% Similarity=0.467 Sum_probs=71.1
Q ss_pred eEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
+|||+||++.++.+.+..|.++|+. ++ -.++|++||.+...+.... ..+ -..+|
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs-----------~~-sPiiIlATNRg~~~irGt~--~~s------------phGiP 333 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALES-----------EL-SPIIILATNRGITKIRGTD--IIS------------PHGIP 333 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTS-----------TT---EEEEEES-SEEE-BTTS---EE------------ETT--
T ss_pred ceEEecchhhccHHHHHHHHHHhcC-----------CC-CcEEEEecCceeeeccCcc--CcC------------CCCCC
Confidence 4899999999999999999999996 33 3678899998764432210 000 24689
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCC
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESY 799 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 799 (900)
.+|++|+ .+|...||+.+|+.+|++..++ .. .+.+++++++.|...+.
T Consensus 334 ~DlLDRl-lII~t~py~~~ei~~Il~iR~~-------~E--~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 334 LDLLDRL-LIIRTKPYSEEEIKQILKIRAK-------EE--DVEISEDALDLLTKIGV 381 (398)
T ss_dssp HHHHTTE-EEEEE----HHHHHHHHHHHHH-------HC--T--B-HHHHHHHHHHHH
T ss_pred cchHhhc-EEEECCCCCHHHHHHHHHhhhh-------hh--cCcCCHHHHHHHHHHhh
Confidence 9999999 9999999999999999998887 34 47999999999997654
No 235
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.42 E-value=4.8e-13 Score=160.93 Aligned_cols=197 Identities=18% Similarity=0.258 Sum_probs=133.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc---c
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG---A 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g---~ 250 (900)
..|+.++|.++.++++++.+.+ ....+|||+||+||||+++|++||..+.+.+.| |+.+||+.+... .
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~p-------fv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGP-------YIAVNCQLYPDEALAE 394 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCC-------eEEEECCCCChHHHHH
Confidence 3688899999999999998876 567789999999999999999999988766556 999999876320 0
Q ss_pred cccchHH-HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEecC
Q 046258 251 KYRGEFE-ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGATT 316 (900)
Q Consensus 251 ~~~g~~~-~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~att 316 (900)
...|... ..-....+.++.+++|+ ||||||+.|....|. .|.++++.+ .+|+|++|+
T Consensus 395 elfg~~~~~~~~~~~g~~~~a~~Gt-L~ldei~~l~~~~Q~--------~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFELAHGGT-LFLEKVEYLSPELQS--------ALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (638)
T ss_pred HhcCCCCcCccCCCCCceeECCCCE-EEEcChhhCCHHHHH--------HHHHHHhcCcEEeCCCCceEEeeEEEEEecc
Confidence 0111000 00001112244456666 999999999876665 888887654 478999997
Q ss_pred HHHHHHHh--hccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhccc--CcccChhHHHHHHHHhhhhccCCCCh
Q 046258 317 LEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHH--GVRIQDRALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 317 ~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~--~v~i~~eal~~l~~~s~~~~~~~~~p 388 (900)
.+...... ...+.|..|+..+.+..|+..+|.+-+ +.+..++...+ .+.++++++..+..+. +|
T Consensus 466 ~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~--------WP 537 (638)
T PRK11388 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR--------WP 537 (638)
T ss_pred CCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC--------CC
Confidence 65422111 113445668888889999998886633 44444443322 2458899988888766 56
Q ss_pred hhHHHHHH
Q 046258 389 DKAIDLVD 396 (900)
Q Consensus 389 ~~a~~Lld 396 (900)
.+...|-.
T Consensus 538 GNvreL~~ 545 (638)
T PRK11388 538 GNDFELRS 545 (638)
T ss_pred ChHHHHHH
Confidence 55554443
No 236
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=1.4e-12 Score=151.12 Aligned_cols=176 Identities=19% Similarity=0.285 Sum_probs=127.1
Q ss_pred CCCCCCCchHHHHHHHHHHccC----CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 177 KLDPVIGRDEEIRRVVRILSRR----TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~----~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
++++++|++..+.++..++... ...++||+||||||||++|+++|+.+ +..++.+|++....
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~r~---- 77 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQRT---- 77 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEccccccc----
Confidence 5667999999999999988752 25679999999999999999999998 66689988765321
Q ss_pred cchHHHHHHHHHHHHHHc-----CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhcc
Q 046258 253 RGEFEERLKAVLKEVEEA-----EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKD 327 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~~-----~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d 327 (900)
. ..+..+...+... ..+.||+|||+|.|.... +....+.|..++......+|.+++... ...
T Consensus 78 ~----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~~~-----~~~ 144 (482)
T PRK04195 78 A----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTANDPY-----DPS 144 (482)
T ss_pred H----HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccCcc-----ccc
Confidence 1 1233333332221 146789999999986532 223345666777766666777765432 233
Q ss_pred H-HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 328 A-AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 328 ~-al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
+ .+++|+..|.+..|+..+...+++.++.. .++.++++++..++..+.+.+.
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGDLR 197 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH
Confidence 4 78889988999999998888888877765 5788999999999998755433
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=99.41 E-value=4e-12 Score=132.47 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=115.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDE 668 (900)
.++|+||||||||+|++++++.+.........+++...... ..+.+. .....+|+|||
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~---------------------~~~~~~~~~~~dlLilDD 99 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF---------------------SPAVLENLEQQDLVCLDD 99 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh---------------------hHHHHhhcccCCEEEEeC
Confidence 48999999999999999999988655555666666431100 001111 12457999999
Q ss_pred ccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
|+... +..+..|+.+++... .-...++|+|+|..+..+ ....|.|.+
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l----------------------~~~~~~L~s 148 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHAL----------------------SIKLPDLAS 148 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHc----------------------cccchhHHH
Confidence 99874 445567777776421 112346778888876543 224589999
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 747 RLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 747 R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
|+. .++.+.+++.+++..|+++.+. .+ .+.++++++++|++. +++. +|.|...+++.
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~-------~~--~l~l~~~v~~~L~~~-~~~d--~r~l~~~l~~l 207 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAY-------QR--GIELSDEVANFLLKR-LDRD--MHTLFDALDLL 207 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHH-------Hc--CCCCCHHHHHHHHHh-ccCC--HHHHHHHHHHH
Confidence 983 4888999999999999988775 23 379999999999976 5555 89999999765
No 238
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.41 E-value=4.9e-12 Score=146.23 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=134.6
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCCCe-EEEcCCCCcHHHHHHHHHHHHhc----CCCCCCCCCcEEEEEechhhh--
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKNNP-VLIGEPGVGKTAVVEGLAQRIVR----GDVPSNLADVRLIALDMGALV-- 247 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~~v-lL~G~~GtGKT~la~~la~~l~~----~~~p~~l~~~~~~~~~~~~l~-- 247 (900)
+.+.||+.++++|..+|.. ..++++ +|+|+||||||++++.+.+.+.. ..+| .+.++++||..+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp----~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLP----SFNVFEINGMNVVHP 830 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCC----CceEEEEeCCccCCH
Confidence 5689999999999998864 344455 59999999999999999988743 2333 6789999995431
Q ss_pred -----------hccc-ccc-hHHHHHHHHHHHHHHc-CCCeEEEEcchhhhhhCCCCCChhhHHHhHh-hhhhcCcEEEE
Q 046258 248 -----------AGAK-YRG-EFEERLKAVLKEVEEA-EGKVILFIDEIHLVLGAGRTEGSMDAANLFK-PMLARGQLRCI 312 (900)
Q Consensus 248 -----------~g~~-~~g-~~~~~l~~~~~~~~~~-~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~-~~l~~g~irvI 312 (900)
.+.. ..| .....+..++..+... ...+||+|||||.|....+. .+.+++. .....+.+.+|
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QD----VLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQK----VLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHH----HHHHHHHHhhccCCeEEEE
Confidence 1111 111 2234555666655332 33458999999999764321 1222222 11235678899
Q ss_pred EecCHHHHHHHhhccHHHHcccce--eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQ--VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~--i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
|.++...+.. ..+|.+.+||.. +.+.+++.+++.+||+.-++.. ...++++++..++......-.+ -..
T Consensus 907 GISNdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---ARK 977 (1164)
T PTZ00112 907 AISNTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IRK 977 (1164)
T ss_pred EecCchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HHH
Confidence 9997544332 257889998864 6777889999999997766642 2348899999998855422111 226
Q ss_pred HHHHHHHHHH
Q 046258 391 AIDLVDEACA 400 (900)
Q Consensus 391 a~~Lld~a~a 400 (900)
|+++|..|+.
T Consensus 978 ALDILRrAgE 987 (1164)
T PTZ00112 978 ALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHh
Confidence 6777776664
No 239
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.8e-13 Score=133.67 Aligned_cols=207 Identities=18% Similarity=0.284 Sum_probs=141.7
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhc---CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRA---GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~---g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
+..+-|++.|-+.+.+++..-.. -..-.++|...|||+|||||||++||+++|...+ ..|+.++-|++.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---STFFSvSSSDLv----- 203 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSDLV----- 203 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---CceEEeehHHHH-----
Confidence 45577888888888887643210 0111246777899999999999999999998874 478888776654
Q ss_pred ccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCceeecC
Q 046258 634 SRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
++..| .++. ..|++..+....++||+||||.+. ..+-..||-.|. | .-.|-.
T Consensus 204 SKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-G-------VG~d~~ 268 (439)
T KOG0739|consen 204 SKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-G-------VGNDND 268 (439)
T ss_pred HHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-c-------cccCCC
Confidence 34444 3332 568888888888999999999763 224455666665 2 223446
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
.++++.+||.+. .++.++..||+..|.++-+.......+++.++-
T Consensus 269 gvLVLgATNiPw--------------------------~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG--------- 313 (439)
T KOG0739|consen 269 GVLVLGATNIPW--------------------------VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG--------- 313 (439)
T ss_pred ceEEEecCCCch--------------------------hHHHHHHHHhhcceeccCCcHHHhhhhheeccC---------
Confidence 688999999863 357888999976666655665655555555543
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRM 823 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~ 823 (900)
.....+++.-++.|... +..|+.-++.-+++..++.++-+.
T Consensus 314 ~tp~~LT~~d~~eL~~k--TeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 314 DTPHVLTEQDFKELARK--TEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred CCccccchhhHHHHHhh--cCCCCcCceEEEehhhhhhhHHHh
Confidence 23467889999999864 333445567667777777776654
No 240
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.41 E-value=1.3e-12 Score=135.36 Aligned_cols=189 Identities=19% Similarity=0.301 Sum_probs=137.2
Q ss_pred CCCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL------- 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l------- 246 (900)
..|+.+++.+..++.+++...+ .-..++||.|++||||..+|++.|..+.+...| |+.+||+++
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~p-------FlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKP-------FLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCC-------eeEeecCCCchhHhHH
Confidence 6678899999999999998887 456789999999999999999999999888777 999999987
Q ss_pred -hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEE
Q 046258 247 -VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCI 312 (900)
Q Consensus 247 -~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI 312 (900)
++|+. .| -....+.++.+.+|+ +|+|||..+++.-|. .|++++.+| .+|||
T Consensus 274 ElFG~a-pg-----~~gk~GffE~AngGT-VlLDeIgEmSp~lQa--------KLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 274 ELFGHA-PG-----DEGKKGFFEQANGGT-VLLDEIGEMSPRLQA--------KLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HHhcCC-CC-----CCCccchhhhccCCe-EEeehhhhcCHHHHH--------HHHHHhcCCceeecCCcceEEEEEEEE
Confidence 33433 22 122344566778888 999999888877665 899999876 47899
Q ss_pred EecCHHHHHHHhhccHHHH----cccceeeecCCChHHHHHH----HHHHHHHHhcccCcc---cChhHHHHHHHHhhhh
Q 046258 313 GATTLEEYRKYVEKDAAFE----RRFQQVYVAEPSVPDTVSI----LRGLKEKYEGHHGVR---IQDRALVVAAQLSARY 381 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~----~Rf~~i~i~~P~~~e~~~i----lr~l~~~~~~~~~v~---i~~eal~~l~~~s~~~ 381 (900)
++|..+-. .+.+ .+.|+ -|+.++.+..|+..||..- .+.+..++....++. ++++.+..+.++.
T Consensus 339 catq~nL~-~lv~-~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~--- 413 (511)
T COG3283 339 CATQVNLV-ELVQ-KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYA--- 413 (511)
T ss_pred ecccccHH-HHHh-cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcC---
Confidence 99854432 2222 23333 3888899999988888763 355555555444543 6777777666654
Q ss_pred ccCCCChhhHHHHHH
Q 046258 382 ITGRHLPDKAIDLVD 396 (900)
Q Consensus 382 ~~~~~~p~~a~~Lld 396 (900)
+|.+..+|-.
T Consensus 414 -----WpGNVRqL~N 423 (511)
T COG3283 414 -----WPGNVRQLKN 423 (511)
T ss_pred -----CCccHHHHHH
Confidence 5655555543
No 241
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=2.2e-12 Score=149.15 Aligned_cols=195 Identities=21% Similarity=0.267 Sum_probs=138.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCC-CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKN-NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--------------~~~~~~~ 240 (900)
.+|++++|++..++.|...+...... .+||+||+|||||++|+.+++.+.....+... ....++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 46788999999999999988875544 47999999999999999999987543211000 0112344
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| .+.++.++..+.. .....|+||||+|.|.. .+.|.|+..|+. +.+++|.+|
T Consensus 93 idaAs~------~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 93 IDAASN------TG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--------SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred Eecccc------CC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccCH--------HHHHHHHHHHHhCCCCcEEEEEe
Confidence 443221 11 2345555544322 23356899999998743 345688888874 567788887
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... .+.+.+++|+..+.+..++..+....|+.++.. .++.++++++..++..+.+. +.+++.++
T Consensus 157 td~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gs------lRdAlnLL 221 (709)
T PRK08691 157 TDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGS------MRDALSLL 221 (709)
T ss_pred CCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCC------HHHHHHHH
Confidence 6443 255778899988888888998888888877766 57889999999999998544 44899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.++++
T Consensus 222 Dqaia~ 227 (709)
T PRK08691 222 DQAIAL 227 (709)
T ss_pred HHHHHh
Confidence 988764
No 242
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.2e-10 Score=116.95 Aligned_cols=161 Identities=21% Similarity=0.278 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~ 644 (900)
.+++.=.+.+...-+.-+....|-.++||+||||||||.+|+.||+..+- .+..+..+++ + |.|.-
T Consensus 361 psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl---DYA~mTGGDV------A-----PlG~q 426 (630)
T KOG0742|consen 361 PSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL---DYAIMTGGDV------A-----PLGAQ 426 (630)
T ss_pred HHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC---ceehhcCCCc------c-----ccchH
Confidence 34444444444444444555678789999999999999999999998854 2222222221 1 22222
Q ss_pred ccccccchhHHHHhC-CCeEEEEcccccc---------CHHHHHHHHHHh-hCCeeecCCCceeecCCeEEEEccCCCcH
Q 046258 645 GHEEGGQLTEAVRRR-PYSVVLFDEVEKA---------HISVFNTLLQVL-DDGRLTDGQGRTVDFRNTVIIMTSNLGAE 713 (900)
Q Consensus 645 g~~~~~~l~~~~~~~-~~~vlllDEidk~---------~~~~~~~Ll~~l-d~g~~~d~~g~~~~~~~~~iI~tsn~~~~ 713 (900)
+......+++..++. .+-+|||||.|.. +.+....|..+| ..|. .-.+.+++++||.+
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLvlAtNrp-- 495 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLVLATNRP-- 495 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEEeccCCc--
Confidence 222233456655554 5567899999853 444444454444 2332 12467889999985
Q ss_pred HHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 714 HLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
+.|+.+.-+|||++|.|+-+-+++..+++..||+++.
T Consensus 496 ------------------------gdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 496 ------------------------GDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ------------------------cchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 4588899999999999999999999999999998776
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=3e-12 Score=142.54 Aligned_cols=182 Identities=21% Similarity=0.341 Sum_probs=124.7
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc----
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK---- 251 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~---- 251 (900)
.+++.++|++..++++.+.+.....++++|+||||||||++|+++++.+.... + +.+++.+|+..+.....
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~----~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-W----ENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-c----ccceEEechhhhhhcchhhhh
Confidence 35678999999999999988876666899999999999999999999885332 1 23477888876532110
Q ss_pred -------ccch-------HHHHHHHHHHHHHHc----CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEE
Q 046258 252 -------YRGE-------FEERLKAVLKEVEEA----EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRC 311 (900)
Q Consensus 252 -------~~g~-------~~~~l~~~~~~~~~~----~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irv 311 (900)
+.+. ....++.+....... ....+|||||++.+... ..+.|..+++. +..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--------~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--------AQQALRRIMEQYSRTCRF 158 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------HHHHHHHHHHhccCCCeE
Confidence 0000 112233333333221 22457999999988532 23466666652 34566
Q ss_pred EEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhh
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSA 379 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~ 379 (900)
|.+++... ...+.+.+|+..+.+..|+..+...+++....+ .++.++++++..++..+.
T Consensus 159 Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 159 IIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAG 217 (337)
T ss_pred EEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC
Confidence 66665332 145778999988888888888888888777665 577799999999998773
No 244
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=1.2e-11 Score=139.36 Aligned_cols=211 Identities=22% Similarity=0.323 Sum_probs=137.4
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh------
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------ 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------ 248 (900)
+.++||+.+++.+...+.. ..+.+++|+||||||||++++.+++.+.+....... ...++++||.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~-~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCHHHHHH
Confidence 4689999999999998864 455789999999999999999999887431100000 25688999865311
Q ss_pred ---------ccc--ccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhh-----hhcCcEEE
Q 046258 249 ---------GAK--YRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPM-----LARGQLRC 311 (900)
Q Consensus 249 ---------g~~--~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~-----l~~g~irv 311 (900)
|.. ..| ...+.+..+++.+...+.++||+|||+|.|....+ +....|.++ ++...+.+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~-----~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD-----DLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc-----HHHHhHhccccccCCCCCeEEE
Confidence 111 111 23344555566555555578999999999973222 222233333 22357888
Q ss_pred EEecCHHHHHHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
|+.++...... ..++.+.+||. .+.+++++.++..+|++...+. ......++++++..++....+.- .-+.
T Consensus 169 I~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~---Gd~R 241 (365)
T TIGR02928 169 IGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK--AFYDGVLDDGVIPLCAALAAQEH---GDAR 241 (365)
T ss_pred EEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh--hccCCCCChhHHHHHHHHHHHhc---CCHH
Confidence 99887654422 36788888985 4778888999999999766542 11223477888877776654322 2356
Q ss_pred hHHHHHHHHHHHh
Q 046258 390 KAIDLVDEACANV 402 (900)
Q Consensus 390 ~a~~Lld~a~a~~ 402 (900)
.+.+++..++...
T Consensus 242 ~al~~l~~a~~~a 254 (365)
T TIGR02928 242 KAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888776443
No 245
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=4.6e-12 Score=145.45 Aligned_cols=194 Identities=22% Similarity=0.258 Sum_probs=137.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCC-CCC------------CCCCcEEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGD-VPS------------NLADVRLIAL 241 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~-~p~------------~l~~~~~~~~ 241 (900)
.+|++++|++..++.|...+......|. ||+|||||||||+|+++|+.+...+ .+. ......++.+
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3577899999999999999988766666 9999999999999999999985321 110 0112235555
Q ss_pred echhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecC
Q 046258 242 DMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATT 316 (900)
Q Consensus 242 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att 316 (900)
|.+.- .+ ...++.+...+.. .....|+||||+|.+.. +..+.|+..++. ..+++|.+++
T Consensus 91 ~~~~~------~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~--------~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 91 DAASN------NS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK--------SAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred ccccc------CC--HHHHHHHHHHHhhccccCCCeEEEEECccccCH--------HHHHHHHHHHHhCCCCEEEEEEcC
Confidence 54311 11 1223444333332 23456899999987742 345677888875 4567777775
Q ss_pred HHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHH
Q 046258 317 LEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVD 396 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld 396 (900)
... ...+.+.+|+..+.+..++..+....++.++.+ .++.++++++..++..+.+.+ .++..+++
T Consensus 155 ~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl------R~aln~Le 219 (504)
T PRK14963 155 EPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM------RDAESLLE 219 (504)
T ss_pred Chh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 443 267889999999999999999988888877765 578899999999999986554 37888888
Q ss_pred HHHH
Q 046258 397 EACA 400 (900)
Q Consensus 397 ~a~a 400 (900)
..+.
T Consensus 220 kl~~ 223 (504)
T PRK14963 220 RLLA 223 (504)
T ss_pred HHHh
Confidence 7654
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=7.2e-12 Score=130.98 Aligned_cols=163 Identities=19% Similarity=0.248 Sum_probs=112.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+||+|||||+|++++++.+...+..+..+++...... . ..+.+.+. ...+|+||||
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-------------~-----~~~~~~~~--~~dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-------------V-----PEVLEGME--QLSLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-------------h-----HHHHHHhh--hCCEEEEeCh
Confidence 69999999999999999999987654455566665442110 0 01112222 2368999999
Q ss_pred cccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhc
Q 046258 670 EKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNR 747 (900)
Q Consensus 670 dk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R 747 (900)
+.+. +..+..|+.++.... +..++.+|+||+.++..+ ..+.|+|.+|
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l----------------------~~~~~~L~SR 155 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQL----------------------NLGLPDLASR 155 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHc----------------------CcccHHHHHH
Confidence 9875 444555555554210 012345778888765443 3357999999
Q ss_pred cc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 748 LD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 748 ~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
+. .++.+.|++.+++..++++... .+| +.++++++++|+.. ++++ +|.+...+++.
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~-------~~~--~~l~~~v~~~L~~~-~~~d--~r~l~~~l~~l 213 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRAR-------LRG--FELPEDVGRFLLKR-LDRE--MRTLFMTLDQL 213 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHh-hcCC--HHHHHHHHHHH
Confidence 95 6899999999999999876444 233 68999999999976 5556 99999999874
No 247
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.39 E-value=5.5e-12 Score=137.18 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=134.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC------------CCc-eeEecc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD------------ENL-LVRIDM 624 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~------------~~~-~i~i~~ 624 (900)
..++||++++..+.-++. ....++++|.|+||+|||+++++++..+... ..| ++.-+|
T Consensus 4 ~~ivgq~~~~~al~~~~~---------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI---------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred cccccHHHHHHHHHHHhc---------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 357899988877765542 1125689999999999999999999888210 011 111122
Q ss_pred ccc-------------------ccccccccccCCCCCCccc-ccccc--hhHHHHhCCCeEEEEccccccCHHHHHHHHH
Q 046258 625 SEY-------------------MEQHSVSRLIGAPPGYVGH-EEGGQ--LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQ 682 (900)
Q Consensus 625 ~~~-------------------~~~~~~~~l~G~~~g~~g~-~~~~~--l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~ 682 (900)
... .......+++|... +-.. ..|.. -.+.+.++.+++||+|||+.+++.+|+.|++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d-~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~ 153 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD-IERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLD 153 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCCCCcccceecchh-HhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHH
Confidence 210 00011123333210 0000 00000 1123345667999999999999999999999
Q ss_pred HhhCCee--ecCCCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH
Q 046258 683 VLDDGRL--TDGQGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH 759 (900)
Q Consensus 683 ~ld~g~~--~d~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~ 759 (900)
+|++|.+ +.. |....+ .++++|+|+|.. .+.|+++|++||...+.+.+++.
T Consensus 154 ~l~~g~~~v~r~-G~~~~~~~r~iviat~np~-------------------------eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 154 VAASGWNVVERE-GISIRHPARFVLVGSGNPE-------------------------EGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred HHHhCCeEEEEC-CEEEEcCCCEEEEeccccc-------------------------cCCCCHHHHhhcceEEECCCCCC
Confidence 9998863 222 222222 367788888763 34699999999988888888765
Q ss_pred -HHHHHHHHHHHHH----------H-------HHHH---HhcCCccccCHHHHHHHHHcCCC-CCCCchHHHHHHHHHHH
Q 046258 760 -EQLRKVARLQMKD----------V-------AIRL---AERGVALAVTDAALDIVLAESYD-PIYGARPIRRWLEKKVV 817 (900)
Q Consensus 760 -e~~~~I~~~~l~~----------~-------~~~~---~~~~~~~~~~~~a~~~l~~~~~~-~~~g~R~L~~~i~~~i~ 817 (900)
++..+|+++.... + .+.+ .+.=-.+.+++++++++++.+.. +.-|-|....++ .
T Consensus 208 ~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~----r 283 (337)
T TIGR02030 208 VELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLN----R 283 (337)
T ss_pred HHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHH----H
Confidence 7777777763221 1 1111 11112478999999999875432 222445443333 3
Q ss_pred HHHHHHHHcc
Q 046258 818 TELSRMLVRE 827 (900)
Q Consensus 818 ~~l~~~i~~~ 827 (900)
.+-+.+.+.|
T Consensus 284 aArA~Aal~G 293 (337)
T TIGR02030 284 AAKALAAFEG 293 (337)
T ss_pred HHHHHHHHcC
Confidence 3334444444
No 248
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.39 E-value=2.4e-12 Score=125.86 Aligned_cols=176 Identities=18% Similarity=0.304 Sum_probs=128.0
Q ss_pred ccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEecccc
Q 046258 549 VTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDMSE 626 (900)
Q Consensus 549 ~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~ 626 (900)
++++++.....|+|.++.|..+.--.+.. +-| +++|.||||||||+-+.+||+.+.++. ..+..+|.|+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~g-------nmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEG-------NMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcC-------CCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 36778888889999999998887766543 566 699999999999999999999998732 3355555554
Q ss_pred cccccccccccCCCCCCcccccc-cchhHHHHh------CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 627 YMEQHSVSRLIGAPPGYVGHEEG-GQLTEAVRR------RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 627 ~~~~~~~~~l~G~~~g~~g~~~~-~~l~~~~~~------~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
+. |-+.- ..+..+.++ ..+.+++|||+|.+....|.+|.+.|+= ..
T Consensus 89 ---eR-------------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS 141 (333)
T KOG0991|consen 89 ---ER-------------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YS 141 (333)
T ss_pred ---cc-------------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hc
Confidence 11 11110 111111111 2357999999999999999999999983 33
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
+.++|.+++|. ...+-.++-+|| .++.|..|++.++..-+....+ .
T Consensus 142 ~ttRFalaCN~--------------------------s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k-------~ 187 (333)
T KOG0991|consen 142 NTTRFALACNQ--------------------------SEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAK-------A 187 (333)
T ss_pred ccchhhhhhcc--------------------------hhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHH-------H
Confidence 56889999997 466778899999 8999999999876433332222 2
Q ss_pred cCCccccCHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLA 796 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~ 796 (900)
. .+.++++.++.++-
T Consensus 188 E--kv~yt~dgLeaiif 202 (333)
T KOG0991|consen 188 E--KVNYTDDGLEAIIF 202 (333)
T ss_pred h--CCCCCcchHHHhhh
Confidence 3 57899999998884
No 249
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=7.5e-12 Score=142.92 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=139.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCC--------------CCCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPS--------------NLADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~--------------~l~~~~~~~ 240 (900)
.+|++++|++..++.+...+....-.|+ ||+||+|+|||++|+.+++.+.....+. ...+..++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 4678899999999999999987666665 8999999999999999999985433221 011233444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| ...++.+....... ....|++|||+|.|.. ++.|.|+..|+. ..+++|.+|
T Consensus 91 ldaas~------~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~--------~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 91 MDAASN------RG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK--------EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred eccccc------cC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------HHHHHHHHHHhhcCCceEEEEEE
Confidence 442211 11 12344444332211 3346899999998854 456688988875 457777777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... .+.+.+++|+..+++..++..+....++.++.. .++.++++++..++..+.+. +.++..++
T Consensus 155 td~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gd------lR~alnlL 219 (535)
T PRK08451 155 TDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGS------LRDTLTLL 219 (535)
T ss_pred CChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHHHH
Confidence 5532 256889999999999888888888877777665 57889999999999988544 45888999
Q ss_pred HHHHHHh
Q 046258 396 DEACANV 402 (900)
Q Consensus 396 d~a~a~~ 402 (900)
|.++++.
T Consensus 220 dqai~~~ 226 (535)
T PRK08451 220 DQAIIYC 226 (535)
T ss_pred HHHHHhc
Confidence 9887654
No 250
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.7e-12 Score=147.63 Aligned_cols=195 Identities=23% Similarity=0.272 Sum_probs=138.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCC--CC------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPS--NL------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~--~l------------~~~~~~~ 240 (900)
.+|++++|++..++.+...+......| .||+||+|||||++|+.+|+.+.....+. .. ....++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 467789999999999999988766666 48999999999999999999985422110 00 0113444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .+ ...++.+++.+... +...|+||||+|.|.. .+.|.|+..+++ +.+.+|.+|
T Consensus 93 i~~~~~------~~--vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 93 VDAASN------TQ--VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eecccc------CC--HHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------HHHHHHHHHHhCCCCCEEEEEEe
Confidence 443211 11 22345555544322 3346899999998854 356688888876 567888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+.... ..+.+++|+..+.+..++..+....+..+..+ .++.++++++..++..+.+. +.++..++
T Consensus 157 ~d~~k-----il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gs------lr~al~ll 221 (527)
T PRK14969 157 TDPQK-----IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGS------MRDALSLL 221 (527)
T ss_pred CChhh-----CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 65442 44568999999999888888887777666654 46788999999999988543 45899999
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
|.++++
T Consensus 222 dqai~~ 227 (527)
T PRK14969 222 DQAIAY 227 (527)
T ss_pred HHHHHh
Confidence 988765
No 251
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.38 E-value=5.6e-12 Score=148.14 Aligned_cols=184 Identities=22% Similarity=0.213 Sum_probs=123.8
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccccc--chhHHHHhCCCeEEE
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGG--QLTEAVRRRPYSVVL 665 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~--~l~~~~~~~~~~vll 665 (900)
+|++||.|+||||||++|++||..+.+ ..+|+++.++. + ...|+|.-.-+-....+. .-.+.+.++.+++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-t----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-T----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-c----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 789999999999999999999998865 44799988632 1 244555421000000000 011123345779999
Q ss_pred EccccccCHHHHHHHHHHhhCCeeecC-CCceee-cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHH
Q 046258 666 FDEVEKAHISVFNTLLQVLDDGRLTDG-QGRTVD-FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPE 743 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g~~~d~-~g~~~~-~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (900)
+|||+.+++.+|+.|+++|++|.++-. .|.... ..++++|+|+|... . ...|+++
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e----~-------------------~g~L~~~ 146 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE----G-------------------GGGLPDH 146 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc----c-------------------cCCCCHH
Confidence 999999999999999999999985432 132222 24788999999742 0 3579999
Q ss_pred HHhcccceeecCCC-CHHHHHHHHHHHHHHHH-----------H---HHHhcCCccccCHHHHHHHHHcCCC
Q 046258 744 LLNRLDEIVVFDPL-SHEQLRKVARLQMKDVA-----------I---RLAERGVALAVTDAALDIVLAESYD 800 (900)
Q Consensus 744 ll~R~~~~i~f~pl-~~e~~~~I~~~~l~~~~-----------~---~~~~~~~~~~~~~~a~~~l~~~~~~ 800 (900)
|++||+..+...++ ..++..+|+++.+..+. + ...+.--.+.++++++++|+..+..
T Consensus 147 LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~ 218 (589)
T TIGR02031 147 LLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAAS 218 (589)
T ss_pred HHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHH
Confidence 99999887766664 44666788877653221 0 1111222478999999999987654
No 252
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.38 E-value=6e-12 Score=138.94 Aligned_cols=149 Identities=25% Similarity=0.394 Sum_probs=105.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc-CCCCCCcccccc-cchhHHHH---hC--CCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI-GAPPGYVGHEEG-GQLTEAVR---RR--PYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~-G~~~g~~g~~~~-~~l~~~~~---~~--~~~ 662 (900)
+++|+||||||||++|+.+|..+.+ ...+.++++..+....+...++ |.+|+++|+... |.+.+++. .. .+.
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 6999999999999999999999876 3456677777777777777766 777888887653 44444333 22 358
Q ss_pred EEEEccccccCHH-HHHHHHHHhhCCe------ee----cCCC-ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHH
Q 046258 663 VVLFDEVEKAHIS-VFNTLLQVLDDGR------LT----DGQG-RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARD 730 (900)
Q Consensus 663 vlllDEidk~~~~-~~~~Ll~~ld~g~------~~----d~~g-~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~ 730 (900)
||+||||++++.+ ++..|+++||.+. +. ...+ .-.-..|+.||+|+|..-..
T Consensus 275 vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs---------------- 338 (459)
T PRK11331 275 VFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS---------------- 338 (459)
T ss_pred EEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc----------------
Confidence 9999999999966 6899999998531 11 1111 12234699999999985211
Q ss_pred HHHHHHHhcccHHHHhcccceeecCC-CCHHHH
Q 046258 731 QVLQEVRKHFRPELLNRLDEIVVFDP-LSHEQL 762 (900)
Q Consensus 731 ~~~~~~~~~~~~~ll~R~~~~i~f~p-l~~e~~ 762 (900)
...++.+|++|| ..|.+.| ++...+
T Consensus 339 ------~~~lD~AlrRRF-~fi~i~p~~~~~~~ 364 (459)
T PRK11331 339 ------LAVVDYALRRRF-SFIDIEPGFDTPQF 364 (459)
T ss_pred ------hhhccHHHHhhh-heEEecCCCChHHH
Confidence 124799999999 6677776 665433
No 253
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.38 E-value=1.1e-12 Score=124.54 Aligned_cols=115 Identities=33% Similarity=0.536 Sum_probs=85.4
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchh---HHHHhCC-CeEEEE
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLT---EAVRRRP-YSVVLF 666 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~---~~~~~~~-~~vlll 666 (900)
+||+||||||||++|+.+|+.+. .+++.++++.+... +.+... ..+. ....... .+||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~~~------------~~~~~~-~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELISS------------YAGDSE-QKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHHTS------------STTHHH-HHHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cccccccccccccc------------cccccc-cccccccccccccccceeeee
Confidence 68999999999999999999994 48999999886532 111111 1222 2233333 699999
Q ss_pred ccccccCHHH-----------HHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 667 DEVEKAHISV-----------FNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 667 DEidk~~~~~-----------~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
||+|.+.+.. ++.|+..+++..- ..++++||+|||.
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~------------------------- 111 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNS------------------------- 111 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESS-------------------------
T ss_pred ccchhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCC-------------------------
Confidence 9999987765 8899999986321 1246899999998
Q ss_pred HHhcccHHHH-hcccceeecC
Q 046258 736 VRKHFRPELL-NRLDEIVVFD 755 (900)
Q Consensus 736 ~~~~~~~~ll-~R~~~~i~f~ 755 (900)
...+++.|+ +||+..+.|+
T Consensus 112 -~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 112 -PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -GGGSCHHHHSTTSEEEEEE-
T ss_pred -hhhCCHhHHhCCCcEEEEcC
Confidence 467899999 9998887764
No 254
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=6.4e-12 Score=144.12 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=135.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCC--C------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPS--N------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~--~------------l~~~~~~~ 240 (900)
..|++++|++..++.+...+......| +||+||+|||||++|+.+|+.+....... . .....++.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 467789999999999999887754444 88999999999999999999985422110 0 00123455
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.. .| .+.++.+...+... .+.-|++|||+|.|.. .+.+.|+..|+. +.+.+|.+|
T Consensus 93 Idaas~------ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 93 LDAASN------NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------SAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred eccccc------cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------HHHHHHHHHHHhCCCcEEEEEEC
Confidence 543221 11 12244444433321 2345799999999853 245688888875 456777777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+++|++.+.+..++..+....++....+ .++.++++++..++..+.+. +..+..++
T Consensus 157 t~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd------lR~AlnlL 221 (605)
T PRK05896 157 TEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS------LRDGLSIL 221 (605)
T ss_pred CChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHHHH
Confidence 5432 256889999999999999988888888777765 47789999999999988543 44788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+..+..
T Consensus 222 ekL~~y 227 (605)
T PRK05896 222 DQLSTF 227 (605)
T ss_pred HHHHhh
Confidence 876654
No 255
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.5e-12 Score=130.70 Aligned_cols=145 Identities=23% Similarity=0.366 Sum_probs=108.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc---CCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHc----CCCeE
Q 046258 203 PVLIGEPGVGKTAVVEGLAQRIVR---GDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA----EGKVI 275 (900)
Q Consensus 203 vlL~G~~GtGKT~la~~la~~l~~---~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~----~~~~i 275 (900)
+||.||||||||++++++|+.+.- +.++ ...++++|+.++.+ +|.++..+.+..+|+.+.+. +.-+.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~----~~~liEinshsLFS--KWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYY----KGQLIEINSHSLFS--KWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccc----cceEEEEehhHHHH--HHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 688899999999999999998833 2233 56799999999987 78888888887777766542 22346
Q ss_pred EEEcchhhhhhCCCC----CC---hhhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHcccce-eeecCCC
Q 046258 276 LFIDEIHLVLGAGRT----EG---SMDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPS 343 (900)
Q Consensus 276 L~iDEi~~l~~~~~~----~~---~~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~ 343 (900)
++|||++.|..++.+ .. ...+.|.++.-+. ..++.+++++|-.+. +|-+|..|-+. .++..|+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s-----iD~AfVDRADi~~yVG~Pt 328 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS-----IDVAFVDRADIVFYVGPPT 328 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH-----HHHHhhhHhhheeecCCcc
Confidence 889999999866532 12 2345666665554 455666666676654 79999999986 6689999
Q ss_pred hHHHHHHHHHHHHHH
Q 046258 344 VPDTVSILRGLKEKY 358 (900)
Q Consensus 344 ~~e~~~ilr~l~~~~ 358 (900)
...+.+|++...+..
T Consensus 329 ~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 329 AEAIYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877764
No 256
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=9.6e-12 Score=145.25 Aligned_cols=195 Identities=21% Similarity=0.283 Sum_probs=138.6
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.+...+......| .||+||+|||||++|+.+|+.+.....+.. .....++.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 467889999999999999998765566 678999999999999999999854332110 01223455
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|.+.- .| ...++.+.+.+.. .....|+||||+|.|.. .+.|.|+..++. ..+.+|.+|
T Consensus 93 idaas~------~~--vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 93 IDAASN------NG--VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------GAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred eecccc------CC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------HHHHHHHHHhcCCCCCeEEEEEe
Confidence 543211 11 2234555555442 23356899999999853 356788888875 356667666
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|++.+.+..|+..+....++.+.++ .++.++++++..++..+.+. +.++..++
T Consensus 157 t~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~------~R~al~~L 221 (559)
T PRK05563 157 TEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGG------MRDALSIL 221 (559)
T ss_pred CChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 5443 257889999999999888888888888777765 57889999999999887533 44788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+.+.
T Consensus 222 dq~~~~ 227 (559)
T PRK05563 222 DQAISF 227 (559)
T ss_pred HHHHHh
Confidence 887664
No 257
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.36 E-value=9.5e-12 Score=149.98 Aligned_cols=186 Identities=19% Similarity=0.314 Sum_probs=127.2
Q ss_pred cHHHHcCCCCC-CCCchHHHHHHHHHHcc------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 170 DLVEQAGKLDP-VIGRDEEIRRVVRILSR------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 170 ~l~~~a~~~~~-~iG~~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
|+......|+. .+|.+...+++++.+.. .....++|+||||||||++++.++..+ +.+++.++
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~ 381 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMA 381 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEE
Confidence 33333355554 89999999999987762 234568999999999999999999988 55688888
Q ss_pred chhh-----hhcc--cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---------
Q 046258 243 MGAL-----VAGA--KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--------- 306 (900)
Q Consensus 243 ~~~l-----~~g~--~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------- 306 (900)
++.. +.|+ .|.|...+++...+..+.. .++ |+||||+|.+.+..+. +..+.|+++++.
T Consensus 382 ~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~-~~~-villDEidk~~~~~~g----~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 382 LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV-KNP-LFLLDEIDKMSSDMRG----DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred cCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC-CCC-EEEEEChhhcccccCC----CHHHHHHHHhccccEEEEecc
Confidence 7654 2222 2445554554443332221 224 6999999999765432 234466666643
Q ss_pred --------CcEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHH-HH-hcc----cCcccChhHHH
Q 046258 307 --------GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKE-KY-EGH----HGVRIQDRALV 372 (900)
Q Consensus 307 --------g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~-~~-~~~----~~v~i~~eal~ 372 (900)
+.+.+|+|+|.- .++++|++||..|.+..++.++...|.+.... +. .+. ..+.++++++.
T Consensus 456 ~~~~~~dls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~ 529 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAII 529 (784)
T ss_pred cccccccCCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHH
Confidence 567788876542 38999999999999999999999998865442 22 211 23568999998
Q ss_pred HHHHH
Q 046258 373 VAAQL 377 (900)
Q Consensus 373 ~l~~~ 377 (900)
.++..
T Consensus 530 ~ii~~ 534 (784)
T PRK10787 530 GIIRY 534 (784)
T ss_pred HHHHh
Confidence 88863
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=99.35 E-value=2.9e-11 Score=126.30 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=117.8
Q ss_pred CCCCCC-CchHHHHHHHHHH-cc---CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVI-GRDEEIRRVVRIL-SR---RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~i-G~~~~i~~l~~~l-~~---~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
+|+.++ |...+....++.+ .. ...++++|+||+|||||++++++++.+... +..+++++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--
Confidence 455555 5544444443332 21 223678899999999999999999887433 445788887776531
Q ss_pred ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHH
Q 046258 252 YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFE 331 (900)
Q Consensus 252 ~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~ 331 (900)
...+.+.+...+ +|+||+++.+.+..+ ......+.+..+.++|...++++++.+... ....|.|.
T Consensus 88 --------~~~~~~~~~~~d---~LiiDDi~~~~~~~~--~~~~Lf~l~n~~~~~g~~ilits~~~p~~l--~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE---LVCLDDLDVIAGKAD--WEEALFHLFNRLRDSGRRLLLAASKSPREL--PIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC---EEEEechhhhcCChH--HHHHHHHHHHHHHhcCCEEEEeCCCCHHHc--CccCccHH
Confidence 122333344332 699999998854322 234456666666677877777777554432 12478999
Q ss_pred ccc---ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhc
Q 046258 332 RRF---QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYI 382 (900)
Q Consensus 332 ~Rf---~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~ 382 (900)
+|| ..+.+..|+.+++.++++..... .++.++++++.+++....+.+
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH
Confidence 999 45778888999999998754433 368899999999998875543
No 259
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=4.9e-11 Score=120.83 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=129.0
Q ss_pred CCCCCCchHHHHHHHH----HHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccccc
Q 046258 178 LDPVIGRDEEIRRVVR----ILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYR 253 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~----~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~ 253 (900)
+++++|-+.+.+.|++ ++...+.+|+||+|++|||||++++++....... +.++|++.-..+..
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~~----- 93 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLGD----- 93 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhcc-----
Confidence 5568998888777766 4555788999999999999999999999988554 67799997666542
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC------cEEEEEecCHHHHHH-H---
Q 046258 254 GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------QLRCIGATTLEEYRK-Y--- 323 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------~irvI~att~~~~~~-~--- 323 (900)
+..++..+.......|||+|++. ..........|+.+|+.| ++.+.+|+|+-.... .
T Consensus 94 ------l~~l~~~l~~~~~kFIlf~DDLs-------Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 94 ------LPELLDLLRDRPYKFILFCDDLS-------FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred ------HHHHHHHHhcCCCCEEEEecCCC-------CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 55666666766668999999972 122333457888888754 567777777643211 1
Q ss_pred --------------hhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChh-HHHHHHHHhhhhccCCCC
Q 046258 324 --------------VEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDR-ALVVAAQLSARYITGRHL 387 (900)
Q Consensus 324 --------------~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~e-al~~l~~~s~~~~~~~~~ 387 (900)
++..-+|..||.. +.+..|+.++-.+|++.++++ .++.++++ ....+...+.+. +..-
T Consensus 161 ~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~r--g~RS 234 (249)
T PF05673_consen 161 REDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALRR--GGRS 234 (249)
T ss_pred ccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHc--CCCC
Confidence 1112367779986 888999999999999999887 47777743 333333333222 1223
Q ss_pred hhhHHHHHHHH
Q 046258 388 PDKAIDLVDEA 398 (900)
Q Consensus 388 p~~a~~Lld~a 398 (900)
+..|.++++..
T Consensus 235 GRtA~QF~~~l 245 (249)
T PF05673_consen 235 GRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 260
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=2.9e-11 Score=135.22 Aligned_cols=186 Identities=27% Similarity=0.361 Sum_probs=119.7
Q ss_pred CCCchHHHHHHHHHHc----c------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 181 VIGRDEEIRRVVRILS----R------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~----~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
++|++.+++.+...+. + ..+.|+||+||||||||++|+.||..+ +.+|+.+|++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 8999999888855441 1 135789999999999999999999988 5669999998
Q ss_pred hhhhcccccch-HHHHHHHHHHH----HHHcCCCeEEEEcchhhhhhCCCC------CChhhHHHhHhhhhhcCc-----
Q 046258 245 ALVAGAKYRGE-FEERLKAVLKE----VEEAEGKVILFIDEIHLVLGAGRT------EGSMDAANLFKPMLARGQ----- 308 (900)
Q Consensus 245 ~l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~~iL~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~~g~----- 308 (900)
.+.. ..|.|. .+..+..++.. +..+. +.||||||||.+...+.. .+...+.+.|+++|+...
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~-~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQ-RGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcC-CcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 7653 235564 33333333321 23334 567999999999875322 112246678888886321
Q ss_pred ----------EEEEEecCH---------------------------------------HHHHHH--------hhccHHHH
Q 046258 309 ----------LRCIGATTL---------------------------------------EEYRKY--------VEKDAAFE 331 (900)
Q Consensus 309 ----------irvI~att~---------------------------------------~~~~~~--------~~~d~al~ 331 (900)
.++|.++|. ....+. +-..|.|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 223333222 000000 01268888
Q ss_pred cccce-eeecCCChHHHHHHHH----HHHHHHhc---ccC--cccChhHHHHHHHHh
Q 046258 332 RRFQQ-VYVAEPSVPDTVSILR----GLKEKYEG---HHG--VRIQDRALVVAAQLS 378 (900)
Q Consensus 332 ~Rf~~-i~i~~P~~~e~~~ilr----~l~~~~~~---~~~--v~i~~eal~~l~~~s 378 (900)
.|+.. +.+...+.++...|+. .+.++|.. ..+ +.++++++..++..+
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 99987 4556678888888886 45554432 233 458999999999864
No 261
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=7.6e-11 Score=134.16 Aligned_cols=207 Identities=21% Similarity=0.281 Sum_probs=135.9
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------- 247 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------- 247 (900)
+.++||+.+++++...+.. ..+.+++|+||||||||++++.+++.+.... + +..++++||....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~----~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-V----KVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-C----CcEEEEEECCcCCCHHHHHH
Confidence 4689999999999988743 3456799999999999999999999875433 2 5679999986431
Q ss_pred ------hcc--cccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh---cCcEEEEEec
Q 046258 248 ------AGA--KYRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA---RGQLRCIGAT 315 (900)
Q Consensus 248 ------~g~--~~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~irvI~at 315 (900)
.+. ...| .+.+.+..+.+.+...+.++||+|||+|.+.... + .+....|...+. ...+.+|+.+
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---~-~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---G-NDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---C-chHHHHHHHhhhccCCCeEEEEEEE
Confidence 110 0112 2344455555555555557899999999997211 1 122223333332 2367788888
Q ss_pred CHHHHHHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+....... .++.+.+||. .|.++.++.++..++++..... ......++++++..++..+.+... -...+.+
T Consensus 181 ~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~G---d~r~a~~ 253 (394)
T PRK00411 181 SDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTAREHG---DARVAID 253 (394)
T ss_pred CCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHhcC---cHHHHHH
Confidence 65544332 5788888874 4777888888999988765542 122335789999988887754321 2346777
Q ss_pred HHHHHHHH
Q 046258 394 LVDEACAN 401 (900)
Q Consensus 394 Lld~a~a~ 401 (900)
++..++..
T Consensus 254 ll~~a~~~ 261 (394)
T PRK00411 254 LLRRAGLI 261 (394)
T ss_pred HHHHHHHH
Confidence 77766543
No 262
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-12 Score=129.59 Aligned_cols=167 Identities=26% Similarity=0.380 Sum_probs=118.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc--ccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllD 667 (900)
.+|++||||||||.+||++|+.. +.-|+++=.|++.+. |+|... -+.|++..+.+.-|++|||
T Consensus 213 gvllygppgtgktl~aravanrt---dacfirvigselvqk------------yvgegarmvrelf~martkkaciiffd 277 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQK------------YVGEGARMVRELFEMARTKKACIIFFD 277 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHHH------------HhhhhHHHHHHHHHHhcccceEEEEee
Confidence 69999999999999999999765 568999988876553 555332 2456677777788999999
Q ss_pred ccccc-----------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHH
Q 046258 668 EVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV 736 (900)
Q Consensus 668 Eidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (900)
|||.. +.+||..+|+++..-.-.|. -.|.-++|+||.+
T Consensus 278 eidaiggarfddg~ggdnevqrtmleli~qldgfdp------rgnikvlmatnrp------------------------- 326 (435)
T KOG0729|consen 278 EIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP------RGNIKVLMATNRP------------------------- 326 (435)
T ss_pred ccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC------CCCeEEEeecCCC-------------------------
Confidence 99875 45688888887752111111 2477899999985
Q ss_pred HhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHH-HHHHHcCCCCCCCchHHHHHHH
Q 046258 737 RKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAAL-DIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 737 ~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~-~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
..++|+|+ +|+|..|.|.-++-+-...|++.+.+ +..++.+.. +.|++.+ +|....+|++++.
T Consensus 327 -dtldpallrpgrldrkvef~lpdlegrt~i~kihak-----------smsverdir~ellarlc--pnstgaeirsvct 392 (435)
T KOG0729|consen 327 -DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK-----------SMSVERDIRFELLARLC--PNSTGAEIRSVCT 392 (435)
T ss_pred -CCcCHhhcCCcccccceeccCCcccccceeEEEecc-----------ccccccchhHHHHHhhC--CCCcchHHHHHHH
Confidence 56889998 59999999999988888777776655 334444443 3344332 3333557777665
Q ss_pred HHH
Q 046258 814 KKV 816 (900)
Q Consensus 814 ~~i 816 (900)
.+=
T Consensus 393 eag 395 (435)
T KOG0729|consen 393 EAG 395 (435)
T ss_pred Hhh
Confidence 443
No 263
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.7e-11 Score=143.04 Aligned_cols=195 Identities=22% Similarity=0.298 Sum_probs=138.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCC-CeEEEcCCCCcHHHHHHHHHHHHhcCC-----CCC--------------CCCC
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKN-NPVLIGEPGVGKTAVVEGLAQRIVRGD-----VPS--------------NLAD 235 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l~~~~-----~p~--------------~l~~ 235 (900)
.+|+++||++..++.|...+...... .+||+||+|||||++|+.+|+.+.... .|. .-..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 57888999999999999988875544 589999999999999999999985321 110 0001
Q ss_pred cEEEEEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEE
Q 046258 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLR 310 (900)
Q Consensus 236 ~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~ir 310 (900)
..++.+|.++. .| .+.++.+++.+... ....|+||||+|.|.. .+.|.|+..|++ +.+.
T Consensus 101 ~Dv~e~~a~s~------~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------~a~naLLKtLEePp~~~~ 164 (598)
T PRK09111 101 VDVLEMDAASH------TG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------AAFNALLKTLEEPPPHVK 164 (598)
T ss_pred CceEEeccccc------CC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------HHHHHHHHHHHhCCCCeE
Confidence 12334433211 11 23455555554422 3356899999999853 356788888875 4677
Q ss_pred EEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+|.+|+.... +-+.+++|++.+.+..++..+....++..+.+ .++.++++++..++..+.++ +..
T Consensus 165 fIl~tte~~k-----ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd------lr~ 229 (598)
T PRK09111 165 FIFATTEIRK-----VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS------VRD 229 (598)
T ss_pred EEEEeCChhh-----hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHH
Confidence 7777754331 44678999999999999988888888777765 57889999999999988554 447
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
+..+++.++++
T Consensus 230 al~~Ldkli~~ 240 (598)
T PRK09111 230 GLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHhh
Confidence 88888887654
No 264
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=1.3e-11 Score=128.76 Aligned_cols=164 Identities=20% Similarity=0.307 Sum_probs=118.4
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||+|||||+|++++++.+......++.+++.++... ...+.+.++ ...+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~--~~d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLE--QYELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhh--hCCEEEEec
Confidence 359999999999999999999887655567788887665421 011222233 346999999
Q ss_pred ccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
++... +..+..|+.+++.-. -++..+|+|++..+..+ ..+.|+|.+
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~----------~~g~~ilits~~~p~~l----------------------~~~~~~L~S 153 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLR----------DSGRRLLLAASKSPREL----------------------PIKLPDLKS 153 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHH----------hcCCEEEEeCCCCHHHc----------------------CccCccHHH
Confidence 99764 456677888886311 12345788888765433 235789999
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 747 RLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 747 R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
||. .++.+.+++.+++..+++.... ..| +.++++++++|++. +++. +|.|...++...
T Consensus 154 Rl~~gl~~~l~~~~~e~~~~il~~ka~-------~~~--~~l~~ev~~~L~~~-~~~d--~r~l~~~l~~l~ 213 (234)
T PRK05642 154 RLTLALVFQMRGLSDEDKLRALQLRAS-------RRG--LHLTDEVGHFILTR-GTRS--MSALFDLLERLD 213 (234)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHH
Confidence 994 5777899999999999886543 233 68999999999976 5556 899999997664
No 265
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=1.6e-11 Score=142.11 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=140.7
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC-------CCCceeEeccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD-------DENLLVRIDMSEYMEQH 631 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~~~~ 631 (900)
.|.+.+.-++.|...+..+..+ ..|...++++|+||||||.+++.+.+.+.. ..-.++.|||..+....
T Consensus 756 ~LPhREeEIeeLasfL~paIkg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 5778889999999999877544 223334679999999999999999887732 11357899997765543
Q ss_pred cc-----ccccCCCCCCcccccccchhHHHHh-----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 632 SV-----SRLIGAPPGYVGHEEGGQLTEAVRR-----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 632 ~~-----~~l~G~~~g~~g~~~~~~l~~~~~~-----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
.+ ..|.|..|. .|......+...+.. ....||+|||||.+....+..|+.+++.... .-..
T Consensus 832 sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s~SK 902 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------INSK 902 (1164)
T ss_pred HHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------cCCe
Confidence 32 234454331 222111222222221 2246899999999987778888888874221 1245
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
++||+++|.-. +...+.|.+.+||.. .+.|.||+.+++.+|+...+...
T Consensus 903 LiLIGISNdlD-----------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A------- 952 (1164)
T PTZ00112 903 LVLIAISNTMD-----------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC------- 952 (1164)
T ss_pred EEEEEecCchh-----------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-------
Confidence 78889998410 023456778888853 58999999999999999888732
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.-.++++|++++++........+|..-.+++.++
T Consensus 953 --~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 953 --KEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred --CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1358999999999754322223776666665444
No 266
>PRK08727 hypothetical protein; Validated
Probab=99.34 E-value=2.2e-11 Score=127.20 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=116.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDE 668 (900)
+++|+||+|||||+|+++++..+...+...+.+++.++.. .+.+.+. -....+|+|||
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~---------------------~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG---------------------RLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh---------------------hHHHHHHHHhcCCEEEEeC
Confidence 5999999999999999999998876555666776654221 1112222 12446999999
Q ss_pred ccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
|+.+. +..+..|+.+++... -....+|+|||.++..+ ..+.|+|.+
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l----------------------~~~~~dL~S 149 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGL----------------------ALVLPDLRS 149 (233)
T ss_pred cccccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhh----------------------hhhhHHHHH
Confidence 99885 445667777776421 02345888998876554 336799999
Q ss_pred cc--cceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 747 RL--DEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 747 R~--~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
|| ..++.|+|++.+++..|+++.... + .+.++++++++|++. .++. .|.+.+.++...
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~--~l~l~~e~~~~La~~-~~rd--~r~~l~~L~~l~ 209 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQR-------R--GLALDEAAIDWLLTH-GERE--LAGLVALLDRLD 209 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-CCCC--HHHHHHHHHHHH
Confidence 96 368899999999999999986652 2 368999999999986 4344 777777776544
No 267
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.4e-11 Score=142.13 Aligned_cols=195 Identities=21% Similarity=0.285 Sum_probs=136.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC---C--------CCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN---L--------ADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~---l--------~~~~~~~~~~ 243 (900)
..+++++|++..++.+...+......| .||+||+|||||++|+.+|+.+.....+.. . .+..++.++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 356779999999999999998766556 589999999999999999998854321100 0 0112333322
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHH
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLE 318 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~ 318 (900)
++ ..| ...++.+...+... +...|++|||+|.|.. .+.+.|+..|+. +.+.+|.+|+..
T Consensus 95 as------n~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 95 AS------NNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------SAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cc------cCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------HHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 11 011 22355555554432 3456899999999854 356788888875 357777777543
Q ss_pred HHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
. .+.+.+++|++.+.+..++..+....++..+.+ .++.++++++..++..+.+. +..|..+++..
T Consensus 159 ~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gs------lR~AlslLekl 223 (725)
T PRK07133 159 H-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGS------LRDALSIAEQV 223 (725)
T ss_pred h-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 3 256789999999999888888888888776665 46788999999999988543 34788888876
Q ss_pred HHH
Q 046258 399 CAN 401 (900)
Q Consensus 399 ~a~ 401 (900)
++.
T Consensus 224 ~~y 226 (725)
T PRK07133 224 SIF 226 (725)
T ss_pred HHh
Confidence 643
No 268
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.4e-11 Score=135.41 Aligned_cols=197 Identities=20% Similarity=0.280 Sum_probs=128.0
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeE-eccccc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVR-IDMSEY 627 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~-i~~~~~ 627 (900)
.+.....++|++.++..+..++... +-| ..+||+||+|+|||++|+.+|+.+.+... +... ..|...
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-------rl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-------KLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-------CCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC
Confidence 3455678999999999999998654 223 35999999999999999999999987321 1110 111110
Q ss_pred cccccccc-ccCCCCCC-----------------cccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhh
Q 046258 628 MEQHSVSR-LIGAPPGY-----------------VGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLD 685 (900)
Q Consensus 628 ~~~~~~~~-l~G~~~g~-----------------~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld 685 (900)
. .... .-|..|.+ ++.+..+.+.+.+.. ..+.|++|||+|.+++..+|.||..|+
T Consensus 90 ~---~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 90 P---VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred H---HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0 0000 01111111 111111223333332 356799999999999999999999999
Q ss_pred CCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHH
Q 046258 686 DGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKV 765 (900)
Q Consensus 686 ~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I 765 (900)
+ ...+++||+.|+.+ ..+.|.+.+|| ..+.|.||+.+++..+
T Consensus 167 E-----------pp~~~~fiLit~~~--------------------------~~llptIrSRc-~~i~l~pl~~~~~~~~ 208 (351)
T PRK09112 167 E-----------PPARALFILISHSS--------------------------GRLLPTIRSRC-QPISLKPLDDDELKKA 208 (351)
T ss_pred c-----------CCCCceEEEEECCh--------------------------hhccHHHHhhc-cEEEecCCCHHHHHHH
Confidence 7 23566777777652 34579999999 8999999999999888
Q ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 766 ARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 766 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
+.... ....++++++..+++.+- ++ .|...+++
T Consensus 209 L~~~~-----------~~~~~~~~~~~~i~~~s~-G~--pr~Al~ll 241 (351)
T PRK09112 209 LSHLG-----------SSQGSDGEITEALLQRSK-GS--VRKALLLL 241 (351)
T ss_pred HHHhh-----------cccCCCHHHHHHHHHHcC-CC--HHHHHHHH
Confidence 87621 112377888887776532 22 44444444
No 269
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.7e-12 Score=131.57 Aligned_cols=143 Identities=29% Similarity=0.400 Sum_probs=102.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC------CCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCe-
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD------DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYS- 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~- 662 (900)
-+|++||||||||+|.|++|+.+-- ....++.+|+..+ .++.|+.+...+... -..+.+.+.. +++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL-----FSKWFsESgKlV~km-F~kI~ELv~d-~~~l 251 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL-----FSKWFSESGKLVAKM-FQKIQELVED-RGNL 251 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH-----HHHHHhhhhhHHHHH-HHHHHHHHhC-CCcE
Confidence 3999999999999999999998832 1334666666543 244444321111110 0123333333 333
Q ss_pred -EEEEccccccCH---------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchH
Q 046258 663 -VVLFDEVEKAHI---------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQ 726 (900)
Q Consensus 663 -vlllDEidk~~~---------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~ 726 (900)
.+++||+|.+.. .+.|+||..||.=+ .+.|+++++|||.
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl---------------- 306 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNL---------------- 306 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccch----------------
Confidence 478999997632 27899999999522 4679999999998
Q ss_pred HHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 727 VARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 727 ~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
...++-+|.+|-|......|++.+.+.+|++..+.++-
T Consensus 307 ----------~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 307 ----------TDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred ----------HHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999888665
No 270
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.5e-11 Score=144.37 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=138.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
.+|++++|++..++.|...+......| .||+||+|||||++|+.+|+.+.....+.. -....+++
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 467889999999999999988766556 589999999999999999999854322100 00112444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
+|..+- .| .+.++.+...+... ...-|+||||+|.|.. .+.|.|+..|++ +.+.+|.+|
T Consensus 93 id~~s~------~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 93 IDGASN------TG--VDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred eeccCc------cC--HHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------HHHHHHHHHHHcCCCCeEEEEEe
Confidence 433221 11 22344554444322 2345899999999854 356799999985 467777777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... .+.+.+++|+..+.+..++..+....++.+..+ .++.++++++..++..+.+.+ .++..++
T Consensus 157 ~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l------r~al~~L 221 (576)
T PRK14965 157 TEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM------RDSLSTL 221 (576)
T ss_pred CChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH------HHHHHHH
Confidence 6543 256789999999999888888877777766665 578899999999999886543 3788899
Q ss_pred HHHHHHh
Q 046258 396 DEACANV 402 (900)
Q Consensus 396 d~a~a~~ 402 (900)
|.+.++.
T Consensus 222 dqliay~ 228 (576)
T PRK14965 222 DQVLAFC 228 (576)
T ss_pred HHHHHhc
Confidence 8887664
No 271
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=2.9e-11 Score=125.94 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=109.9
Q ss_pred CCCCCCCCchHH--HHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccccc
Q 046258 176 GKLDPVIGRDEE--IRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYR 253 (900)
Q Consensus 176 ~~~~~~iG~~~~--i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~ 253 (900)
.+|+.++|.+.. +..+.+.......+.++|+||||||||++++++++.....+. + ..++++.....
T Consensus 13 ~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-----~--~~y~~~~~~~~----- 80 (229)
T PRK06893 13 ETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-----T--AIYIPLSKSQY----- 80 (229)
T ss_pred ccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----C--eEEeeHHHhhh-----
Confidence 457777765432 122222222222223689999999999999999998755432 2 44554432211
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEE-ecCHHHHHHHhhccHHHHc
Q 046258 254 GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIG-ATTLEEYRKYVEKDAAFER 332 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~-att~~~~~~~~~~d~al~~ 332 (900)
....++..+. ...+|+|||++.+.+... ......+.+....+++...+|. +++.+.... ...+.|.+
T Consensus 81 -----~~~~~~~~~~---~~dlLilDDi~~~~~~~~--~~~~l~~l~n~~~~~~~~illits~~~p~~l~--~~~~~L~s 148 (229)
T PRK06893 81 -----FSPAVLENLE---QQDLVCLDDLQAVIGNEE--WELAIFDLFNRIKEQGKTLLLISADCSPHALS--IKLPDLAS 148 (229)
T ss_pred -----hhHHHHhhcc---cCCEEEEeChhhhcCChH--HHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc--ccchhHHH
Confidence 0112222232 244799999998864322 1223445555555556544444 444333222 14588999
Q ss_pred ccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhc
Q 046258 333 RFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYI 382 (900)
Q Consensus 333 Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~ 382 (900)
|+. .+.+..|+.+++.++++..+.. .++.++++++.+++....+.+
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH
Confidence 986 5778999999999999877664 478899999999998875543
No 272
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.32 E-value=1.5e-11 Score=146.51 Aligned_cols=133 Identities=25% Similarity=0.399 Sum_probs=99.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc--ccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllD 667 (900)
+++|+||||||||++|++++..+.. +|+.++++++.+. |+|... -..+....+....+|||||
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~---~f~~is~~~~~~~------------~~g~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFVEM------------FVGVGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCC---CEEEEehHHhHHh------------hhcccHHHHHHHHHHHHhcCCcEEEeh
Confidence 5999999999999999999998844 8999999876532 222211 1223344455566999999
Q ss_pred cccccCH--------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 668 EVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 668 Eidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
|||.+.. .+++.||..||.- . +...+++|+|||.+
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~--~-------~~~~vivIaaTN~p---------------------- 300 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E-------GNEGIIVIAATNRP---------------------- 300 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--c-------CCCCeeEEEecCCh----------------------
Confidence 9998732 2566777777631 1 12468999999983
Q ss_pred HHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHH
Q 046258 734 QEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKD 772 (900)
Q Consensus 734 ~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~ 772 (900)
..++|+++. |||..+.|+.++.++..+|++.++.+
T Consensus 301 ----~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 301 ----DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ----hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 567899984 99999999999999999999988873
No 273
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.6e-11 Score=138.54 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=131.9
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCC---CCC------------------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVP---SNL------------------ 233 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p---~~l------------------ 233 (900)
.++++++|++..++.+...+......| +||+||||||||++|+.+|+.+.....+ ...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 467889999999999999888765555 8899999999999999999998542110 000
Q ss_pred -CCcEEEEEechhhhhcccccchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--C
Q 046258 234 -ADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--G 307 (900)
Q Consensus 234 -~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 307 (900)
.+..++.++.+.. .+ .+.++.+...+. ......|+||||+|.+... ..+.|+..+++ +
T Consensus 93 ~~~~n~~~~~~~~~------~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------~~~~LLk~LEep~~ 156 (397)
T PRK14955 93 GTSLNISEFDAASN------NS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------AFNAFLKTLEEPPP 156 (397)
T ss_pred CCCCCeEeeccccc------CC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------HHHHHHHHHhcCCC
Confidence 0112333322110 11 233444444442 1233568999999998542 34577888875 3
Q ss_pred cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCC
Q 046258 308 QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 308 ~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
...+|.+++... ..-+.+.+|+..+.+..++..+....++..... .++.++++++..++..+.+.
T Consensus 157 ~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s~g~------ 221 (397)
T PRK14955 157 HAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKAQGS------ 221 (397)
T ss_pred CeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------
Confidence 566666664322 245788999998888888887777777666554 57889999999999998544
Q ss_pred hhhHHHHHHHHHHHh
Q 046258 388 PDKAIDLVDEACANV 402 (900)
Q Consensus 388 p~~a~~Lld~a~a~~ 402 (900)
+..+...++..+.+.
T Consensus 222 lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 222 MRDAQSILDQVIAFS 236 (397)
T ss_pred HHHHHHHHHHHHHhc
Confidence 347777777766553
No 274
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.32 E-value=1.5e-11 Score=135.67 Aligned_cols=192 Identities=19% Similarity=0.269 Sum_probs=128.1
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchH
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEF 256 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~ 256 (900)
++++++|++..+..+...+.....++++|+||||||||++++.+++.+..... ...++.++++.... ...+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~~~----~~~~ 85 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDERG----IDVI 85 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccccc----hHHH
Confidence 46679999999999999998877778999999999999999999998854322 22356665443211 0111
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh--cCcEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 257 EERLKAVLKEVEEA-EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA--RGQLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 257 ~~~l~~~~~~~~~~-~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~irvI~att~~~~~~~~~~d~al~~R 333 (900)
...+.......... ....+++|||+|.+.... .+.|..+++ ....++|.+++... ...+.+.+|
T Consensus 86 ~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~--------~~~L~~~le~~~~~~~lIl~~~~~~-----~l~~~l~sr 152 (319)
T PRK00440 86 RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA--------QQALRRTMEMYSQNTRFILSCNYSS-----KIIDPIQSR 152 (319)
T ss_pred HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH--------HHHHHHHHhcCCCCCeEEEEeCCcc-----ccchhHHHH
Confidence 11222111111011 224579999999885432 235666665 23456666664332 134668889
Q ss_pred cceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 334 FQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 334 f~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
+..+.+..++..+...+++....+ .++.++++++..++..+.+. +..+...++.++.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~~ 209 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGD------MRKAINALQAAAA 209 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 998899888888888888776665 57889999999999887443 4467777776654
No 275
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3e-12 Score=129.04 Aligned_cols=170 Identities=25% Similarity=0.378 Sum_probs=121.7
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHh--------cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSR--------AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~--------~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
..+....+=|.+..++.|.+++.... .|+ +|.-.++|+|+||||||.||+++|+.. ...|+++-.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvG 252 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVG 252 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhhh
Confidence 33455667888999999999886431 122 343478999999999999999999776 447888887
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCC
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQ 693 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~ 693 (900)
+++.+. ..|.-|. --++++........+++|+||||... .++|..+|++|..--=.|
T Consensus 253 seLiQk-----ylGdGpk-----lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd-- 320 (440)
T KOG0726|consen 253 SELIQK-----YLGDGPK-----LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-- 320 (440)
T ss_pred HHHHHH-----HhccchH-----HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc--
Confidence 776443 3332111 11455666666667999999999763 457877777775211011
Q ss_pred CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHH
Q 046258 694 GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 694 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+-.++-+|++||. ...++|+|+ +|+|..|.|+-+++....+|+..+-.
T Consensus 321 ----srgDvKvimATnr--------------------------ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 321 ----SRGDVKVIMATNR--------------------------IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred ----ccCCeEEEEeccc--------------------------ccccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 1247889999997 577899998 59999999999999999998876554
No 276
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-11 Score=122.88 Aligned_cols=165 Identities=22% Similarity=0.373 Sum_probs=111.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHh--------cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSR--------AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~--------~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..+.+-|.+..++.+.+++-... .|+ +|.-.+|++||||||||.+||+.|..... .|..+-...
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmARAcAaqT~a---TFLKLAgPQ- 240 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMARACAAQTNA---TFLKLAGPQ- 240 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHHHHHHhccc---hHHHhcchH-
Confidence 34567888888888888875331 232 34447999999999999999999977632 444443332
Q ss_pred ccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhC--CeeecCCC
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDD--GRLTDGQG 694 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~--g~~~d~~g 694 (900)
.+..++|... .--+.-+...+.+..+++|+||+|.. +.+||..+|++|.. |.-
T Consensus 241 ----LVQMfIGdGA-----kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs----- 306 (424)
T KOG0652|consen 241 ----LVQMFIGDGA-----KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS----- 306 (424)
T ss_pred ----HHhhhhcchH-----HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-----
Confidence 2334444211 00011122333455699999999865 45688877777652 211
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+-.++-+|++||. ..-++|+|+ +|+|..|.|+-++++...+|++.+-+
T Consensus 307 ---s~~~vKviAATNR--------------------------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 307 ---SDDRVKVIAATNR--------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred ---CccceEEEeeccc--------------------------ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhh
Confidence 1135779999997 456789998 59999999999999999988877665
No 277
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.6e-11 Score=140.98 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=135.9
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
..|++++|++..++.+...+......| .||+||+|+|||++|+.+|+.+.....+.. .....++.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 357789999999999999998765555 789999999999999999999854322210 00112333
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
++.+. ..+ ...++.+...+.. ..+..|++|||+|.|.. .+.|.|+..+++ +.+.+|.+|
T Consensus 93 idgas------~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~--------~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 93 IDGAS------NTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN--------SAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred ecCcc------cCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH--------HHHHHHHHhhccCCCCEEEEEec
Confidence 32211 011 1233344433322 23456899999999853 356688888875 567777777
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|++.+.+..++.++....++..... .++.++++++..++..+.+. +..+..++
T Consensus 157 te~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gd------lR~alslL 221 (563)
T PRK06647 157 TEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGS------VRDAYTLF 221 (563)
T ss_pred CChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 5432 256889999999999888888887777766655 57889999999999988543 44788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+++.
T Consensus 222 dklis~ 227 (563)
T PRK06647 222 DQVVSF 227 (563)
T ss_pred HHHHhh
Confidence 877654
No 278
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.32 E-value=7.5e-11 Score=123.28 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCCCC--CchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 178 LDPVI--GRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 178 ~~~~i--G~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
|++++ +.+..+..+.+++......+++|+||+|||||++|+.+++..... +.++++++|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~------ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA------ 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh------
Confidence 45555 355677888877666677899999999999999999999988543 345889999887531
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccc
Q 046258 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~ 335 (900)
...++..+. +..+|+|||+|.+..... ........+......+. ++|.+++.... ......+.|.+|+.
T Consensus 81 ----~~~~~~~~~---~~~lLvIDdi~~l~~~~~--~~~~L~~~l~~~~~~~~-~iIits~~~~~-~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 81 ----DPEVLEGLE---QADLVCLDDVEAIAGQPE--WQEALFHLYNRVREAGG-RLLIAGRAAPA-QLPLRLPDLRTRLA 149 (226)
T ss_pred ----HHHHHhhcc---cCCEEEEeChhhhcCChH--HHHHHHHHHHHHHHcCC-eEEEECCCChH-HCCcccHHHHHHHh
Confidence 112222222 233699999999854320 01122233333333343 56666543221 11112377888874
Q ss_pred ---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 336 ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 336 ---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
.+.++.|+.+++..+++....+ .++.++++++..+..... ..+..+..+++.+..
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~------gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGS------RDMGSLMALLDALDR 207 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcc------CCHHHHHHHHHHHHH
Confidence 4778888888888888765544 467799999988887542 234456666655443
No 279
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-11 Score=129.51 Aligned_cols=182 Identities=20% Similarity=0.303 Sum_probs=128.0
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeE
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSV 663 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~v 663 (900)
+|.-.+||+||||||||.+|+++|+.... +|+.++++.++++ .+| ..+. ..++....+-.+++
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga---~fInv~~s~lt~K-----Wfg-------E~eKlv~AvFslAsKl~P~i 189 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGA---NFINVSVSNLTSK-----WFG-------EAQKLVKAVFSLASKLQPSI 189 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcCC---Ccceeeccccchh-----hHH-------HHHHHHHHHHhhhhhcCcce
Confidence 35557999999999999999999999854 9999999987763 333 2221 12222333445699
Q ss_pred EEEccccccC-------HH----HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHH
Q 046258 664 VLFDEVEKAH-------IS----VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQV 732 (900)
Q Consensus 664 lllDEidk~~-------~~----~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 732 (900)
+|+||||.+- .+ .-+.|....| |-.++. -..++++.+||.+.
T Consensus 190 IFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~------~~rVlVlgATNRP~-------------------- 242 (386)
T KOG0737|consen 190 IFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKD------SERVLVLGATNRPF-------------------- 242 (386)
T ss_pred eehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCC------CceEEEEeCCCCCc--------------------
Confidence 9999999752 22 3355666555 333322 13588889999874
Q ss_pred HHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 733 LQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 733 ~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
.+..++++|+...+.++-++.+...+|++..|+. ..+.-.|+= ..++. .+..|..++|+.++
T Consensus 243 ------DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~-------e~~e~~vD~---~~iA~--~t~GySGSDLkelC 304 (386)
T KOG0737|consen 243 ------DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK-------EKLEDDVDL---DEIAQ--MTEGYSGSDLKELC 304 (386)
T ss_pred ------cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc-------cccCcccCH---HHHHH--hcCCCcHHHHHHHH
Confidence 3678999999998888889999999999999982 222222332 33332 23345678999999
Q ss_pred HHHHHHHHHHHHHcc
Q 046258 813 EKKVVTELSRMLVRE 827 (900)
Q Consensus 813 ~~~i~~~l~~~i~~~ 827 (900)
..+...++-+.+..+
T Consensus 305 ~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 305 RLAALRPIRELLVSE 319 (386)
T ss_pred HHHhHhHHHHHHHhc
Confidence 999999999888876
No 280
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=5.5e-11 Score=135.45 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=132.9
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC---------------CCCcEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN---------------LADVRLI 239 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~---------------l~~~~~~ 239 (900)
.+|++++|++..+..+...+......| .||+||+|+|||++|+.+|+.+........ .....++
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 467889999999999999988755444 789999999999999999999854311000 0011244
Q ss_pred EEechhhhhcccccchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEe
Q 046258 240 ALDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGA 314 (900)
Q Consensus 240 ~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~a 314 (900)
.++... ..| ...++.+...+. ......|+||||+|.+... +.+.|+.++++ +.+.+|.+
T Consensus 94 ~i~g~~------~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 94 EIDGAS------HRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------AFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred Eeeccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--------HHHHHHHHhhcCCCCceEEEE
Confidence 443211 111 112222222222 1234678999999998542 45688888875 46777777
Q ss_pred cCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
++... .+.+.+++|+..+.+..++..+....++...++ .++.++++++..++..+.+.+ ..+..+
T Consensus 158 t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl------r~a~~~ 222 (451)
T PRK06305 158 TTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL------RDAESL 222 (451)
T ss_pred eCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHH
Confidence 75432 256889999999999888888877777766654 578899999999999885433 367777
Q ss_pred HHHHHHH
Q 046258 395 VDEACAN 401 (900)
Q Consensus 395 ld~a~a~ 401 (900)
++..+..
T Consensus 223 Lekl~~~ 229 (451)
T PRK06305 223 YDYVVGL 229 (451)
T ss_pred HHHHHHh
Confidence 7766543
No 281
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.31 E-value=2.9e-12 Score=149.13 Aligned_cols=185 Identities=25% Similarity=0.353 Sum_probs=127.4
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV------- 247 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~------- 247 (900)
.+..++|.+..++++.+.+.+ ....+++|+|++|||||++|++||....+...| |+.+||+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~-------~i~i~c~~~~~~~~~~~ 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAP-------FIALNMAAIPKDLIESE 208 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCC-------eEeeeCCCCCHHHHHHH
Confidence 345689999999998887765 456789999999999999999999988666555 9999998762
Q ss_pred -hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEEEE
Q 046258 248 -AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRCIG 313 (900)
Q Consensus 248 -~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irvI~ 313 (900)
+|+. .|.+.+......+.+..+.+|+ |||||++.|....|. .|.++++.+. +|+|+
T Consensus 209 lfg~~-~g~~~~~~~~~~g~~~~a~~Gt-l~l~~i~~l~~~~q~--------~L~~~l~~~~~~~~~~~~~~~~~~rii~ 278 (469)
T PRK10923 209 LFGHE-KGAFTGANTIRQGRFEQADGGT-LFLDEIGDMPLDVQT--------RLLRVLADGQFYRVGGYAPVKVDVRIIA 278 (469)
T ss_pred hcCCC-CCCCCCCCcCCCCCeeECCCCE-EEEeccccCCHHHHH--------HHHHHHhcCcEEeCCCCCeEEeeEEEEE
Confidence 2322 2222211111122244556677 999999999876665 7888776543 58999
Q ss_pred ecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHh
Q 046258 314 ATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLS 378 (900)
Q Consensus 314 att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s 378 (900)
+|+.+..... -...+.|..||..+.+..|+..+|.+ +++.+..++...++ ..++++++..+..+.
T Consensus 279 ~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 352 (469)
T PRK10923 279 ATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 (469)
T ss_pred eCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9876542211 11235667788888888888887776 44555555544333 247889988887766
No 282
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-11 Score=135.34 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=120.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCc------ee--------
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENL------LV-------- 620 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~------~i-------- 620 (900)
....++||+.|-+.+--+. +|.. ++||+||||||||.+|+.+...|-.- ... +.
T Consensus 177 D~~DV~GQ~~AKrAleiAA----AGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAA----AGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred chhhhcCcHHHHHHHHHHH----hcCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 4567999998776655543 3333 69999999999999999887766210 000 00
Q ss_pred ---Eeccccccccc---ccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCC-
Q 046258 621 ---RIDMSEYMEQH---SVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ- 693 (900)
Q Consensus 621 ---~i~~~~~~~~~---~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~- 693 (900)
.....-|..+| +...|+|. | +......+..+.++||||||.-.....+++.|.+.||+|.++-+.
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aLvGG---G-----~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa 317 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAALVGG---G-----GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRA 317 (490)
T ss_pred cCccceeCCccCCCccchHHHHhCC---C-----CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEc
Confidence 11111222121 11233442 1 122334455678899999999999999999999999999876433
Q ss_pred -CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHH
Q 046258 694 -GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQ 761 (900)
Q Consensus 694 -g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~ 761 (900)
.......++++|+++|+++.-... .....+.+.......+.++++.+|++|||..+..+.++..+
T Consensus 318 ~~~v~ypa~Fqlv~AmNpcpcG~~~---~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 318 GSKVTYPARFQLVAAMNPCPCGNLG---APLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred CCeeEEeeeeEEhhhcCCCCccCCC---CCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 333444588999999997632221 11223445555566678889999999999999998887533
No 283
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.30 E-value=5.7e-11 Score=129.68 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=74.4
Q ss_pred eEEEEcchhhhhhCCCCCC----hhhHHHhHhhhhhc------------CcEEEEEecCHHHHHHHhhccHHHHcccce-
Q 046258 274 VILFIDEIHLVLGAGRTEG----SMDAANLFKPMLAR------------GQLRCIGATTLEEYRKYVEKDAAFERRFQQ- 336 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~~~----~~~~~~~L~~~l~~------------g~irvI~att~~~~~~~~~~d~al~~Rf~~- 336 (900)
.|+||||||.+.....+.+ ...+.+.|+++++. ..+-+|+++..... +-...-|.|..||.+
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPIR 329 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccceE
Confidence 3699999999987643211 12356788888864 45778888742211 111356999999997
Q ss_pred eeecCCChHHHHHHH----HHHHHHHhcc---cCc--ccChhHHHHHHHHhhh
Q 046258 337 VYVAEPSVPDTVSIL----RGLKEKYEGH---HGV--RIQDRALVVAAQLSAR 380 (900)
Q Consensus 337 i~i~~P~~~e~~~il----r~l~~~~~~~---~~v--~i~~eal~~l~~~s~~ 380 (900)
+.+..++.++...|| ..+..+|... .++ .++++++..++..+..
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 667888999999998 4577777653 344 4899999999998854
No 284
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.2e-11 Score=136.40 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=132.5
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~ 240 (900)
..|++++|++..++.+...+......|. ||+||+|+|||++|+.+|+.+........ . ....++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 4577899999999999999988666664 78999999999999999999853211100 0 0112344
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~at 315 (900)
+|.++ ..| ...++.+.+.+.. .+...|++|||+|.|.. ++.|.|+..++.. .+.+|.+|
T Consensus 93 idaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 93 IDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------EAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred EeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------HHHHHHHHHHhcCCCCeEEEEEE
Confidence 43321 111 1123333333332 23356899999998853 3456788888753 45666666
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|++.+.+..++..+....++.++.. .++.++++++..++..+.+. +..+..++
T Consensus 157 t~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~------lr~al~~L 221 (486)
T PRK14953 157 TEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG------MRDAASLL 221 (486)
T ss_pred CCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 4322 145689999999999888888888888777765 46789999999999887543 44788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.++.+
T Consensus 222 dkl~~~ 227 (486)
T PRK14953 222 DQASTY 227 (486)
T ss_pred HHHHHh
Confidence 887654
No 285
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.30 E-value=5e-12 Score=146.21 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=129.1
Q ss_pred CCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------
Q 046258 178 LDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-------- 247 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------- 247 (900)
+..++|.+..++++.+.+.+ ....+++|+|++||||+++|+.+|....+...| |+.+||+.+.
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~-------~v~v~c~~~~~~~~~~~l 210 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKR-------FVAINCAAIPENLLESEL 210 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCC-------eEEEECCCCChHHHHHHh
Confidence 45689999999998887765 456789999999999999999999987655555 9999998762
Q ss_pred hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEe
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGA 314 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~a 314 (900)
+|+. .|.|.+..+...+.+..+++|+ ||||||+.|....|. .|.++++.+ .+|+|++
T Consensus 211 fg~~-~~~~~~~~~~~~g~~~~a~~gt-l~l~~i~~l~~~~q~--------~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 211 FGYE-KGAFTGAVKQTLGKIEYAHGGT-LFLDEIGDLPLNLQA--------KLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred cCCC-CCCcCCCccCCCCceeECCCCE-EEEechhhCCHHHHH--------HHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 3322 3333333333333455566677 999999999876665 777777644 4699999
Q ss_pred cCHHHHHHH--hhccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHh
Q 046258 315 TTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLS 378 (900)
Q Consensus 315 tt~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s 378 (900)
|+.+..... -...+.|..|+..+.+..|+..+|.+ +.+.+..++...++ ..++++++..+..+.
T Consensus 281 ~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred cCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 976542211 11234566788888888998888877 34555555544333 358899988888765
No 286
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.30 E-value=9.3e-12 Score=121.84 Aligned_cols=177 Identities=16% Similarity=0.236 Sum_probs=124.3
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchH
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEF 256 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~ 256 (900)
.+.+++|.++.+.++.-+...+..+|++|.|||||||||.+..||+.+-...+.+. +.++|.+.- +|
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~-----vLELNASde------RG-- 91 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA-----VLELNASDE------RG-- 91 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH-----hhhccCccc------cc--
Confidence 45679999999999999888899999999999999999999999999854333211 566665542 23
Q ss_pred HHHHHHHHHHHHHc------CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh--cCcEEEEEecCHHHHHHHhhccH
Q 046258 257 EERLKAVLKEVEEA------EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA--RGQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 257 ~~~l~~~~~~~~~~------~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~irvI~att~~~~~~~~~~d~ 328 (900)
..-++..++.+.+. +...|+++||+|.+....|. .|++.|+ ....|+..++|..+- +-.
T Consensus 92 IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQ--------AlRRtMEiyS~ttRFalaCN~s~K-----IiE 158 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQ--------ALRRTMEIYSNTTRFALACNQSEK-----IIE 158 (333)
T ss_pred cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHH--------HHHHHHHHHcccchhhhhhcchhh-----hhh
Confidence 11233334433332 22348999999998654443 7888877 567888888865442 345
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
.+.+|+..+.+...+..+...-+..+.+. .+++++++.++++.-.+.+.+.
T Consensus 159 PIQSRCAiLRysklsd~qiL~Rl~~v~k~----Ekv~yt~dgLeaiifta~GDMR 209 (333)
T KOG0991|consen 159 PIQSRCAILRYSKLSDQQILKRLLEVAKA----EKVNYTDDGLEAIIFTAQGDMR 209 (333)
T ss_pred hHHhhhHhhhhcccCHHHHHHHHHHHHHH----hCCCCCcchHHHhhhhccchHH
Confidence 57888887777776665555544444443 6788999999999888866654
No 287
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.5e-11 Score=131.53 Aligned_cols=167 Identities=25% Similarity=0.369 Sum_probs=112.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEecccccccc--cc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMSEYMEQ--HS 632 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~~~--~~ 632 (900)
.+.++||+.+++.+..++... +-| ..+||+||+|+||+++|.++|+.+.+... .+....+.....+ +.
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-------rl~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-------RIA-PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 467999999999999998765 222 36999999999999999999999987441 1111001111000 00
Q ss_pred cc---cccCCC---------------CCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeee
Q 046258 633 VS---RLIGAP---------------PGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT 690 (900)
Q Consensus 633 ~~---~l~G~~---------------~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~ 690 (900)
+. ..-|.. ++.++.+..+.+.+.+.. ..+.|++||++|+++....|+||+.||+
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE---- 150 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE---- 150 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC----
Confidence 00 000110 001111111223333433 3568999999999999999999999997
Q ss_pred cCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 691 DGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 691 d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
. .+++||++|+. .+.+.|.+.+|| .++.|.|++.+++.+++....
T Consensus 151 -------P-p~~~fILi~~~--------------------------~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 151 -------P-GNGTLILIAPS--------------------------PESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred -------C-CCCeEEEEECC--------------------------hHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 2 26778887774 356789999999 999999999999988887653
No 288
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.30 E-value=1.8e-10 Score=132.58 Aligned_cols=187 Identities=16% Similarity=0.322 Sum_probs=120.0
Q ss_pred CCCCCC-CCchH--HHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPV-IGRDE--EIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~-iG~~~--~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
-+|+.+ +|.+. +...+.++.... ..++++|+||||+|||++++++++.+.... | +..++++++..+...
T Consensus 119 ~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~~~- 192 (450)
T PRK00149 119 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFTND- 192 (450)
T ss_pred CcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH-
Confidence 355664 35443 344444444332 235689999999999999999999986532 3 677899988776431
Q ss_pred cccchHHH-HHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 251 KYRGEFEE-RLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 251 ~~~g~~~~-~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
+...+.. ....+...+.. ..+|+|||+|.+.+... ...++...+..+.+.+...+|++........ ..++.
T Consensus 193 -~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~~--~~~~l~~~~n~l~~~~~~iiits~~~p~~l~--~l~~~ 264 (450)
T PRK00149 193 -FVNALRNNTMEEFKEKYRS---VDVLLIDDIQFLAGKER--TQEEFFHTFNALHEAGKQIVLTSDRPPKELP--GLEER 264 (450)
T ss_pred -HHHHHHcCcHHHHHHHHhc---CCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCcEEEECCCCHHHHH--HHHHH
Confidence 1111110 11122222322 44799999999854321 1234556666666777665555554332211 25688
Q ss_pred HHcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 330 FERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 330 l~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
+.+||. .+.+..|+.+++.+|++..... .++.++++++..++....+
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCC
Confidence 999995 4788999999999999887775 4788999999998887643
No 289
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=4.6e-11 Score=120.91 Aligned_cols=155 Identities=26% Similarity=0.385 Sum_probs=101.4
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCC----Ccee-Eecccccccc-c-ccccccCCCCCCcccccccchhHHHHh---
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDE----NLLV-RIDMSEYMEQ-H-SVSRLIGAPPGYVGHEEGGQLTEAVRR--- 658 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i-~i~~~~~~~~-~-~~~~l~G~~~g~~g~~~~~~l~~~~~~--- 658 (900)
..+||+||+|+|||++|+.+++.+.+.. .++. ..+|..+... + +. ..+....+..+.+....+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHHHHHHHHHccCcc
Confidence 4699999999999999999999997631 1110 0011111000 0 00 000000011111111222333332
Q ss_pred -CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHH
Q 046258 659 -RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR 737 (900)
Q Consensus 659 -~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (900)
.++.|++|||+|++..+.++.|+..|++ ...+++||+++|. .
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~--------------------------~ 136 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPS--------------------------P 136 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC--------------------------h
Confidence 3457999999999999999999999987 2356778888774 2
Q ss_pred hcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHc
Q 046258 738 KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 738 ~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
..+.+.+.+|+ .++.|.|++.+++.+++... | +++++++.|+..
T Consensus 137 ~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 137 EKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred HhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 45788999999 79999999999987777553 3 578899888865
No 290
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.30 E-value=6.3e-11 Score=129.25 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=73.9
Q ss_pred eEEEEcchhhhhhCCCCC----ChhhHHHhHhhhhhc------------CcEEEEEecCHHHHHHHhhccHHHHcccce-
Q 046258 274 VILFIDEIHLVLGAGRTE----GSMDAANLFKPMLAR------------GQLRCIGATTLEEYRKYVEKDAAFERRFQQ- 336 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------g~irvI~att~~~~~~~~~~d~al~~Rf~~- 336 (900)
.|+||||||.+...+.+. +...+.+.|+++++. ..+-+|+++..... +-...-|.|..||..
T Consensus 249 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 249 GIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFPIR 327 (441)
T ss_pred CEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccceE
Confidence 469999999998765321 122356788888874 45778888742211 111256999999987
Q ss_pred eeecCCChHHHHHHH----HHHHHHHhc---ccCc--ccChhHHHHHHHHhhh
Q 046258 337 VYVAEPSVPDTVSIL----RGLKEKYEG---HHGV--RIQDRALVVAAQLSAR 380 (900)
Q Consensus 337 i~i~~P~~~e~~~il----r~l~~~~~~---~~~v--~i~~eal~~l~~~s~~ 380 (900)
+.+..++.++...|| ..+..+|.. ..++ .++++++..++..+..
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 667888999999988 457777763 3444 4899999999988753
No 291
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.29 E-value=4.1e-11 Score=139.25 Aligned_cols=211 Identities=14% Similarity=0.131 Sum_probs=126.0
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEe---cccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEE
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRI---DMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i---~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vll 665 (900)
.++||+|+||||||.+|+++++.+.+. .|+.. ++..++.. .+.. + ..|. ...-.+.+..+.+++++
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~~~~~l~~~----~~~~-~--~~g~--~~~~~G~l~~A~~Gil~ 305 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGSSAVGLTAA----VTRD-P--ETRE--FTLEGGALVLADNGVCC 305 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCCCcCCcccc----ceEc-c--Ccce--EEecCccEEecCCCEEE
Confidence 389999999999999999999987542 23321 22222110 0000 0 0010 00011233345678999
Q ss_pred EccccccCHHHHHHHHHHhhCCeeecC-CCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHH
Q 046258 666 FDEVEKAHISVFNTLLQVLDDGRLTDG-QGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPE 743 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g~~~d~-~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (900)
+||++++++..+..|+++|+.++++-. .|....+ .++.+|+|+|+-...... .. .+.+ .-.++++
T Consensus 306 iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~----~~-------~~~~--n~~l~~~ 372 (509)
T smart00350 306 IDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDP----KL-------TPEE--NIDLPAP 372 (509)
T ss_pred EechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCC----Cc-------Chhh--ccCCChH
Confidence 999999999999999999999887532 2433333 478999999974211100 00 0000 1258999
Q ss_pred HHhcccceeecC-CCCHHHHHHHHHHHHHHHH--------------------H--HHHhcCCccccCHHHHHHHHHcCCC
Q 046258 744 LLNRLDEIVVFD-PLSHEQLRKVARLQMKDVA--------------------I--RLAERGVALAVTDAALDIVLAESYD 800 (900)
Q Consensus 744 ll~R~~~~i~f~-pl~~e~~~~I~~~~l~~~~--------------------~--~~~~~~~~~~~~~~a~~~l~~~~~~ 800 (900)
+++|||.++... +++.+.-.+|+++.+.... + .+.+..+...+++++.++|.++...
T Consensus 373 lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~ 452 (509)
T smart00350 373 ILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVD 452 (509)
T ss_pred HhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 999999876664 4777777788877553211 0 0112224567899999988754110
Q ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 801 -------------PIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 801 -------------~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
-..+.|.|+.+++ +..+.|++-.
T Consensus 453 ~R~~~~~~~~~~~~~~t~R~l~sliR--la~A~A~l~~ 488 (509)
T smart00350 453 LRKEDSQSEARSSIPITVRQLESIIR--LSEAHAKMRL 488 (509)
T ss_pred hcccccccccccccCcCHHHHHHHHH--HHHHHHHHcC
Confidence 1234678887774 2344444333
No 292
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.29 E-value=2.6e-11 Score=125.09 Aligned_cols=172 Identities=20% Similarity=0.367 Sum_probs=117.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC--CCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD--DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlll 666 (900)
+++++||+|+|||+|.++++..+.. .+..++++++.+|......+ +. .+.+..... -....+|+|
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~~-----------~~~~~~~~~~~~~~DlL~i 103 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-LR-----------DGEIEEFKDRLRSADLLII 103 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-HH-----------TTSHHHHHHHHCTSSEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-HH-----------cccchhhhhhhhcCCEEEE
Confidence 5899999999999999999988754 35678899888775432211 00 012222222 235689999
Q ss_pred ccccccCHH--HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHH
Q 046258 667 DEVEKAHIS--VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPEL 744 (900)
Q Consensus 667 DEidk~~~~--~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 744 (900)
|+|+.+... .+..|+.+++.-. -.+..+|+||+..+..+ ..+.|.|
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l----------------------~~~~~~L 151 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSEL----------------------SGLLPDL 151 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTT----------------------TTS-HHH
T ss_pred ecchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCccc----------------------cccChhh
Confidence 999998654 5788888887411 13446888888776543 3478999
Q ss_pred Hhcccc--eeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 745 LNRLDE--IVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 745 l~R~~~--~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
.+||.. ++.+.|++.+++..|+..... .+| +.++++++++|++. ++++ +|.|...+.+...
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~-------~~~--~~l~~~v~~~l~~~-~~~~--~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAK-------ERG--IELPEEVIEYLARR-FRRD--VRELEGALNRLDA 214 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHH-------HTT----S-HHHHHHHHHH-TTSS--HHHHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHH-------HhC--CCCcHHHHHHHHHh-hcCC--HHHHHHHHHHHHH
Confidence 999964 889999999999999988887 343 57999999999976 6666 9999999876543
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=5.5e-11 Score=133.85 Aligned_cols=215 Identities=19% Similarity=0.242 Sum_probs=132.8
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC------CceeEecccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE------NLLVRIDMSEYMEQHS 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~------~~~i~i~~~~~~~~~~ 632 (900)
.++|.+..++.+...+.....+ ..| ++++++||||||||++++.+.+.+.... -.++.+||..+.....
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~----~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRG----SRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 3678888888888888776432 222 3699999999999999999998774311 3688899987644221
Q ss_pred c-----cccc--CCCCCCcccccc---cchhHHHHh-CCCeEEEEccccccCH---HHHHHHHHHhhCCeeecCCCceee
Q 046258 633 V-----SRLI--GAPPGYVGHEEG---GQLTEAVRR-RPYSVVLFDEVEKAHI---SVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 633 ~-----~~l~--G~~~g~~g~~~~---~~l~~~~~~-~~~~vlllDEidk~~~---~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
. ..+. |......|.... ..+.+.+.. .+..||+|||+|.+.. +++..|+...+... ..
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~--------~~ 162 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD--------LD 162 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC--------CC
Confidence 1 2222 322222222111 112233332 3457899999999942 33333433322111 12
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
..++.+|+++|...- ...+.+.+.+||. ..+.|+||+.+++..|+...+....
T Consensus 163 ~~~v~lI~i~n~~~~-----------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--- 216 (365)
T TIGR02928 163 NAKVGVIGISNDLKF-----------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--- 216 (365)
T ss_pred CCeEEEEEEECCcch-----------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc---
Confidence 246788888886320 2346777888884 5799999999999999998875211
Q ss_pred HhcCCccccCHHHHHHHHHcCC--CCCCCchHHHHHHHHHHHH
Q 046258 778 AERGVALAVTDAALDIVLAESY--DPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~--~~~~g~R~L~~~i~~~i~~ 818 (900)
. .-.+++++++++..... .+. +|....+++.++..
T Consensus 217 --~--~~~~~~~~l~~i~~~~~~~~Gd--~R~al~~l~~a~~~ 253 (365)
T TIGR02928 217 --Y--DGVLDDGVIPLCAALAAQEHGD--ARKAIDLLRVAGEI 253 (365)
T ss_pred --c--CCCCChhHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence 1 23488998888765432 233 67666666655443
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=2.6e-11 Score=147.97 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=121.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC-------CceeEecccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE-------NLLVRIDMSEYMEQ 630 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~-------~~~i~i~~~~~~~~ 630 (900)
+.++|+++.++.+...+.+. .++ +++|+||||||||++|+.+|+.+.... ..++.++++.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-------~~~--n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-------RQN--NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-------CcC--ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc
Confidence 34788888888888776443 233 699999999999999999999885432 23566666553211
Q ss_pred cccccccCCCCCCcccccc--cchhHHHH-hCCCeEEEEccccccCH--------HHHHHHHHHhhCCeeecCCCceeec
Q 046258 631 HSVSRLIGAPPGYVGHEEG--GQLTEAVR-RRPYSVVLFDEVEKAHI--------SVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~--~~l~~~~~-~~~~~vlllDEidk~~~--------~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
..|.|.-+. ..+.+.+. ...+.|||||||+.+.. ++-+.|+..|+.|.
T Consensus 258 ----------~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~----------- 316 (852)
T TIGR03345 258 ----------ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE----------- 316 (852)
T ss_pred ----------cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC-----------
Confidence 124443221 11222222 23568999999998742 34467888888754
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHH--hcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR--KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
..+|.||+.. ++. -..+|+|.+|| .+|.+.+++.++...|++.....+...
T Consensus 317 --l~~IgaTT~~-----------------------e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~- 369 (852)
T TIGR03345 317 --LRTIAATTWA-----------------------EYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH- 369 (852)
T ss_pred --eEEEEecCHH-----------------------HHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc-
Confidence 5688888862 111 23589999999 789999999999999986555433321
Q ss_pred HhcCCccccCHHHHHHHHHcC
Q 046258 778 AERGVALAVTDAALDIVLAES 798 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~ 798 (900)
+ .+.++++++..++..+
T Consensus 370 --~--~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 370 --H--GVLILDEAVVAAVELS 386 (852)
T ss_pred --C--CCeeCHHHHHHHHHHc
Confidence 2 4788999999888653
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3.7e-11 Score=136.33 Aligned_cols=172 Identities=17% Similarity=0.327 Sum_probs=122.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFD 667 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllD 667 (900)
.+++|+||+|+|||+|+++++..+...+.+++.+++..+..... ..+.+ +....... .....||+||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~-~~l~~-----------~~~~~f~~~~~~~dvLiID 209 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV-SAIRS-----------GEMQRFRQFYRNVDALFIE 209 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH-HHHhc-----------chHHHHHHHcccCCEEEEc
Confidence 35999999999999999999999876566788888766543211 11100 11111111 1245799999
Q ss_pred cccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
||+.+.. ..+..|+.+++.-. ..+..+|+|||..+..+ ..+.+.|.
T Consensus 210 Diq~l~~k~~~qeelf~l~N~l~----------~~~k~IIlts~~~p~~l----------------------~~l~~rL~ 257 (445)
T PRK12422 210 DIEVFSGKGATQEEFFHTFNSLH----------TEGKLIVISSTCAPQDL----------------------KAMEERLI 257 (445)
T ss_pred chhhhcCChhhHHHHHHHHHHHH----------HCCCcEEEecCCCHHHH----------------------hhhHHHHH
Confidence 9998853 46777777765311 01235888888765443 34788999
Q ss_pred hccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 746 NRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 746 ~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+||. .++.+.|++.+++..|++..+.. . .+.++++++++|+.. ++++ +|.|...+.+.+
T Consensus 258 SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~--~~~l~~evl~~la~~-~~~d--ir~L~g~l~~l~ 318 (445)
T PRK12422 258 SRFEWGIAIPLHPLTKEGLRSFLERKAEA-------L--SIRIEETALDFLIEA-LSSN--VKSLLHALTLLA 318 (445)
T ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHH
Confidence 9994 79999999999999999887762 3 368999999999974 6555 999999998775
No 296
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.29 E-value=1.1e-10 Score=122.12 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=105.9
Q ss_pred CCCCCC-Cc-hHHHHHHHHHHcc-CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccccc
Q 046258 177 KLDPVI-GR-DEEIRRVVRILSR-RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYR 253 (900)
Q Consensus 177 ~~~~~i-G~-~~~i~~l~~~l~~-~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~ 253 (900)
++++++ |. ...+..+.++... ....+++|+||+|||||++|+++++..... +..++.+++..+...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~---- 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA---- 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH----
Confidence 466666 33 3444444444332 455689999999999999999999987554 344888888765421
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 254 GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~R 333 (900)
+. ....+.+|+|||+|.+....+. .+...+...-..+...+|.+++..... ....+.|.+|
T Consensus 85 ----------~~---~~~~~~~liiDdi~~l~~~~~~----~L~~~~~~~~~~~~~~vl~~~~~~~~~--~~l~~~L~sr 145 (227)
T PRK08903 85 ----------FD---FDPEAELYAVDDVERLDDAQQI----ALFNLFNRVRAHGQGALLVAGPAAPLA--LPLREDLRTR 145 (227)
T ss_pred ----------Hh---hcccCCEEEEeChhhcCchHHH----HHHHHHHHHHHcCCcEEEEeCCCCHHh--CCCCHHHHHH
Confidence 01 1122446999999988543221 222333333345555566665433311 1235778888
Q ss_pred cc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 334 FQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 334 f~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
|. .+.++.|+.++...+++.+..+ .++.++++++..++...
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~ 189 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHF 189 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhc
Confidence 73 4777888877777777655544 57889999999998855
No 297
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.3e-11 Score=139.10 Aligned_cols=196 Identities=19% Similarity=0.243 Sum_probs=133.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCC---CCCC------------------
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDV---PSNL------------------ 233 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~---p~~l------------------ 233 (900)
.+|++++|++..++.+...+....-.| .||+||+|||||++|+.+|+.+..... |..+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 357889999999999999887755555 889999999999999999999854221 1000
Q ss_pred -CCcEEEEEechhhhhcccccchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--C
Q 046258 234 -ADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--G 307 (900)
Q Consensus 234 -~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g 307 (900)
.+..++.+|.... .+ .+.++.+...+. .....-|++|||+|.|.. .+.|.|+.+|++ +
T Consensus 93 g~~~n~~~~d~~s~------~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------~a~naLLK~LEePp~ 156 (620)
T PRK14954 93 GTSLNISEFDAASN------NS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------AAFNAFLKTLEEPPP 156 (620)
T ss_pred cCCCCeEEeccccc------CC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------HHHHHHHHHHhCCCC
Confidence 0112333322110 11 223444444442 123356799999999853 346689999986 4
Q ss_pred cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCC
Q 046258 308 QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 308 ~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
...+|.+++... .+-+.+.+|+..+.+..++..+....++.+... .++.++++++..++..+.+.+.
T Consensus 157 ~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~Gdlr---- 223 (620)
T PRK14954 157 HAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQGSMR---- 223 (620)
T ss_pred CeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH----
Confidence 566666664322 245789999999999888888877777665554 5788999999999999865443
Q ss_pred hhhHHHHHHHHHHHh
Q 046258 388 PDKAIDLVDEACANV 402 (900)
Q Consensus 388 p~~a~~Lld~a~a~~ 402 (900)
.+..+++..+++.
T Consensus 224 --~al~eLeKL~~y~ 236 (620)
T PRK14954 224 --DAQSILDQVIAFS 236 (620)
T ss_pred --HHHHHHHHHHHhc
Confidence 6777777766554
No 298
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.7e-11 Score=137.98 Aligned_cols=134 Identities=25% Similarity=0.426 Sum_probs=101.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
.++++||||||||.|||++|-.. +-||..++.|+|.+- +.| +|...-+.++...+++..|++|||||
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-----fVG-----vGAsRVRdLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh-----hcC-----CCcHHHHHHHHHhhccCCCeEEEehh
Confidence 69999999999999999999777 559999999988653 233 23333455655555554599999999
Q ss_pred cccCH--------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 670 EKAHI--------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 670 dk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
|.... ..+|.||.-||.-. .-..+++|++||.+
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~---------~~~gviviaaTNRp------------------------ 298 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---------GNEGVIVIAATNRP------------------------ 298 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------CCCceEEEecCCCc------------------------
Confidence 97632 25678888887311 11357888899874
Q ss_pred HHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHH
Q 046258 736 VRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 736 ~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
..++|+|+ .|||..|....++-...++|++-+++
T Consensus 299 --dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 299 --DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred --ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 55788998 59999999999999999999997776
No 299
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.28 E-value=1e-10 Score=131.22 Aligned_cols=195 Identities=22% Similarity=0.300 Sum_probs=132.2
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~ 240 (900)
..+++++|++..++.+.+.+......| .||+||||+|||++|+.+++.+.....+.. .....++.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 457789999999999999887755444 789999999999999999999854322110 00123444
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
++.... . ....++.+++.+... .+..|++|||++.+.. ...+.|+..+++ +.+.+|.++
T Consensus 91 ~~~~~~------~--~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 91 IDAASN------N--GVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------SAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eecccc------C--CHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------HHHHHHHHHHhCCccceeEEEEe
Confidence 443210 1 112344555544432 3345899999988843 245577777764 456666666
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|+..+.+..|+..+...+++....+ .++.++++++..++..+.+ -+..+...+
T Consensus 155 ~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g------~~~~a~~~l 219 (355)
T TIGR02397 155 TEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADG------SLRDALSLL 219 (355)
T ss_pred CCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------ChHHHHHHH
Confidence 5433 245789999998889888888888888776665 4778999999998887743 345777777
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+..+.+
T Consensus 220 ekl~~~ 225 (355)
T TIGR02397 220 DQLISF 225 (355)
T ss_pred HHHHhh
Confidence 766653
No 300
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.28 E-value=2.3e-11 Score=138.29 Aligned_cols=174 Identities=16% Similarity=0.303 Sum_probs=121.8
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEE
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
.+++|+||+|+|||+|++++++.+... +..++.+++.++..... ..+.. .....+.+.++ ...+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~-~~~~~--------~~~~~~~~~~~--~~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV-NALRN--------NKMEEFKEKYR--SVDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH-HHHHc--------CCHHHHHHHHH--hCCEEEE
Confidence 359999999999999999999998653 45788888877643211 11100 01112223333 3479999
Q ss_pred ccccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHH
Q 046258 667 DEVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPEL 744 (900)
Q Consensus 667 DEidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 744 (900)
|||+.+.. ..+..|+.+++.-. -.+..+|+|+|..+..+ ..+.+.+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l----------------------~~l~~~l 253 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKEL----------------------PGLEERL 253 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHH----------------------hhhhhhh
Confidence 99998753 45677777776311 02234778888766543 2367889
Q ss_pred Hhccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 745 LNRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 745 l~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
.+||. ..+.|.|++.+++..|++..+.. . .+.++++++++|++. +.++ +|.|+.++.+...
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------~--~~~l~~e~l~~ia~~-~~~~--~r~l~~~l~~l~~ 316 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE-------E--GLELPDEVLEFIAKN-IRSN--VRELEGALNRLLA 316 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHHH
Confidence 99995 47999999999999999988773 3 468899999999964 6666 8999998876543
No 301
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.27 E-value=8.3e-11 Score=133.77 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=105.4
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc---c-ccc----cCCC------CCCcccccccchhH
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS---V-SRL----IGAP------PGYVGHEEGGQLTE 654 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~---~-~~l----~G~~------~g~~g~~~~~~l~~ 654 (900)
.+++|+||||+|||++++.|+..+..... =..++++.+..... . ..+ +-+| .+.+|... ..-.+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~-~~~pG 288 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA-IPGPG 288 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc-eehhh
Confidence 37999999999999999999987743211 12233333211000 0 000 0000 00111100 12234
Q ss_pred HHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecC--CCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHH
Q 046258 655 AVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDG--QGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQV 732 (900)
Q Consensus 655 ~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~--~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 732 (900)
.+..+.++|||||||+.+++.+++.|++.|++|.++-. .+......++++|+|+|..+. +.++... +.+...-
T Consensus 289 ~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pc----G~~~~~~-c~c~~~~ 363 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPT----GHYQGNH-NRCTPEQ 363 (506)
T ss_pred HhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccc----eecCCCC-CCcCHHH
Confidence 67778889999999999999999999999999998632 233333468899999998652 2221111 4444444
Q ss_pred HHHHHhcccHHHHhcccceeecCCCCHH
Q 046258 733 LQEVRKHFRPELLNRLDEIVVFDPLSHE 760 (900)
Q Consensus 733 ~~~~~~~~~~~ll~R~~~~i~f~pl~~e 760 (900)
...+...++.+|++|||..+..++++.+
T Consensus 364 ~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 364 TLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 5567889999999999999999887543
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=1.2e-10 Score=132.53 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=132.7
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccc----
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHS---- 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~---- 632 (900)
.++|.+..++.+...+.....+ ..| .+++++||||||||++++.+++.+... ...++.+||........
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~----~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRG----SRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 3678888888888888766432 233 268999999999999999999887543 35689999987643221
Q ss_pred -cccccCCCCCCcccccc---cchhHHHHh-CCCeEEEEccccccC----HHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 633 -VSRLIGAPPGYVGHEEG---GQLTEAVRR-RPYSVVLFDEVEKAH----ISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 633 -~~~l~G~~~g~~g~~~~---~~l~~~~~~-~~~~vlllDEidk~~----~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
...+.+.+....|.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|+..++.. ...++.
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~~v~ 175 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGARIG 175 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCCeEE
Confidence 12233322222222211 112223332 345789999999886 45566666665531 113677
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
+|+++|.... ...+.+.+.+|+. ..+.|+||+.+++.+|+...+... + .
T Consensus 176 vI~i~~~~~~-----------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~---~--~-- 225 (394)
T PRK00411 176 VIGISSDLTF-----------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG---F--Y-- 225 (394)
T ss_pred EEEEECCcch-----------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh---c--c--
Confidence 8888875310 2336677777774 578999999999999998877521 1 1
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.-.+++++++.+++........+|....++..+
T Consensus 226 ~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 226 PGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 235789999988765421112266555555443
No 303
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.26 E-value=9.4e-11 Score=126.41 Aligned_cols=208 Identities=21% Similarity=0.269 Sum_probs=133.5
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC----CCCceeEecc----cccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD----DENLLVRIDM----SEYMEQ 630 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~----~~~~~i~i~~----~~~~~~ 630 (900)
.++|+++++.++++.++.+..|+..+++ .++|+||||+|||++|++|++.+.. .++++..+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~---il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQ---ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 6999999999999999998877654333 3899999999999999999999854 3446666554 222110
Q ss_pred c------------------------------------------------------------------------ccccccC
Q 046258 631 H------------------------------------------------------------------------SVSRLIG 638 (900)
Q Consensus 631 ~------------------------------------------------------------------------~~~~l~G 638 (900)
- +++.|+|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 0 0011111
Q ss_pred CC-----CCCcccccccc--hhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeec-CCCceeecCCeEEEEccCC
Q 046258 639 AP-----PGYVGHEEGGQ--LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTD-GQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 639 ~~-----~g~~g~~~~~~--l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d-~~g~~~~~~~~~iI~tsn~ 710 (900)
.- ..| +...... +.+.+.++.++++-|+|+.|++.++++.||.++++|.+.- +....+.+ +.+||+|||.
T Consensus 209 ~vd~~k~~~~-~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~-d~liia~sNe 286 (361)
T smart00763 209 KVDIRKLEIY-SESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPI-DGLIIAHSNE 286 (361)
T ss_pred ccCHHHhccc-CCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCccccccc-ceEEEEeCCH
Confidence 00 000 0000000 1123444566899999999999999999999999999974 34334443 5689999996
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCC-CCHHHHHHHHHHHHHHHHHHHHhcCCccccCHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDP-LSHEQLRKVARLQMKDVAIRLAERGVALAVTDA 789 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~ 789 (900)
.- +.. -.......+|++|| .++.++. ++-++=.+|.++.+..- ......+.|-
T Consensus 287 ~e--~~~-----------------~~~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~s------~~~~~~~aP~ 340 (361)
T smart00763 287 SE--WQR-----------------FKSNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRNS------DLTEAHIAPH 340 (361)
T ss_pred HH--Hhh-----------------hhccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhccC------cCcccccCch
Confidence 21 100 00234579999999 4666666 55566677777766521 1124677777
Q ss_pred HHHHHHHc
Q 046258 790 ALDIVLAE 797 (900)
Q Consensus 790 a~~~l~~~ 797 (900)
+++.++..
T Consensus 341 ~le~aa~~ 348 (361)
T smart00763 341 TLEMAALF 348 (361)
T ss_pred HHHHHHHH
Confidence 77766643
No 304
>PRK08727 hypothetical protein; Validated
Probab=99.26 E-value=2.4e-10 Score=119.34 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=113.4
Q ss_pred CCCCCCC-chHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 177 KLDPVIG-RDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 177 ~~~~~iG-~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
+|+.+++ .+..+..+.........+.++|+||+|||||+++++++..+.+.+ .+++++++....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~-------~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG-------RSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEeHHHhh--------
Confidence 4555554 444444444443334445699999999999999999999876543 336666654432
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccc
Q 046258 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~ 335 (900)
..+...++.+.. .-+|+|||++.+..... ......+.+....+++ ..+|.+++.... .+...++.+.+||.
T Consensus 82 --~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl~ 152 (233)
T PRK08727 82 --GRLRDALEALEG---RSLVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRLA 152 (233)
T ss_pred --hhHHHHHHHHhc---CCEEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHHh
Confidence 223344444443 33799999998864322 1222333333333333 556666643221 11235799999963
Q ss_pred ---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhc
Q 046258 336 ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYI 382 (900)
Q Consensus 336 ---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~ 382 (900)
.+.++.|+.+++.++++..+.. .++.++++++..++..+.|.+
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL 198 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH
Confidence 5788999999999999876655 378899999999999886543
No 305
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-09 Score=117.55 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=143.7
Q ss_pred CCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-------
Q 046258 180 PVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------- 248 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------- 248 (900)
.+.+|+.+++++...|.. ..+.|++++|+||||||++++.+.+++.... + +..++++||.....
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-~----~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-A----NVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-c----cCceEEEeeeeCCCHHHHHHH
Confidence 488999999999987754 5677899999999999999999999985532 1 33389999976521
Q ss_pred ------cccccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHH
Q 046258 249 ------GAKYRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEE 319 (900)
Q Consensus 249 ------g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~ 319 (900)
.....| ...+.++.+.+.+...+...|+++||++.|....+ +..-.|.++... ..+.+|+.+|...
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccHH
Confidence 111222 23444556666666667788999999999987654 222122222222 3456777777666
Q ss_pred HHHHhhccHHHHcccce--eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHH
Q 046258 320 YRKYVEKDAAFERRFQQ--VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDE 397 (900)
Q Consensus 320 ~~~~~~~d~al~~Rf~~--i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~ 397 (900)
+..+ .+|.+.++|.. |.|++.+..|...|++.-.+. ....-.++++++..++......-++ -..|++++..
T Consensus 168 ~~~~--ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~--~~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~ 240 (366)
T COG1474 168 FLDY--LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE--GFSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRR 240 (366)
T ss_pred HHHH--hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh--hccCCCcCccHHHHHHHHHHHcCcc---HHHHHHHHHH
Confidence 5443 78999999875 667777899999888765553 1233448888998888776555432 3478888988
Q ss_pred HHHHhhhh
Q 046258 398 ACANVRVQ 405 (900)
Q Consensus 398 a~a~~~~~ 405 (900)
|+......
T Consensus 241 A~eiAe~~ 248 (366)
T COG1474 241 AGEIAERE 248 (366)
T ss_pred HHHHHHhh
Confidence 88655433
No 306
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.26 E-value=2.8e-10 Score=129.46 Aligned_cols=186 Identities=16% Similarity=0.326 Sum_probs=116.3
Q ss_pred CCCCC-CCCchHH--HHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDP-VIGRDEE--IRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~-~iG~~~~--i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
-+|+. ++|.+.. ...+.++.... ..++++|+||+|+|||++++++++.+.+. .| +..++++++..+...
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~----~~~v~yi~~~~~~~~- 180 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NP----NAKVVYVSSEKFTND- 180 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CC----CCcEEEEEHHHHHHH-
Confidence 34566 4565543 23333333332 23567899999999999999999998654 23 566889988765421
Q ss_pred cccchHH-HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 251 KYRGEFE-ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 251 ~~~g~~~-~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
+...+. .....+...+.. .-+|+|||++.+.+... ....+...+..+.+.+...+|++........ ..++.
T Consensus 181 -~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~~--~~~~l~~~~n~~~~~~~~iiits~~~p~~l~--~l~~~ 252 (405)
T TIGR00362 181 -FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKER--TQEEFFHTFNALHENGKQIVLTSDRPPKELP--GLEER 252 (405)
T ss_pred -HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCCEEEecCCCHHHHh--hhhhh
Confidence 111110 011222223332 33799999998864321 1233455565666666555554443332211 25788
Q ss_pred HHcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhh
Q 046258 330 FERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSA 379 (900)
Q Consensus 330 l~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~ 379 (900)
+.+||. .+.+..|+.+++.+|++..... .++.++++++..++....
T Consensus 253 l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 253 LRSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIR 301 (405)
T ss_pred hhhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcC
Confidence 999996 4788999999999999887776 477899999998887653
No 307
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=7e-11 Score=131.55 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=114.6
Q ss_pred CCCCCCchHHHHHHHHHHccCC----------CCCeEEEcCCCCcHHHHHHHHHHHHhcCCC---CC----------CCC
Q 046258 178 LDPVIGRDEEIRRVVRILSRRT----------KNNPVLIGEPGVGKTAVVEGLAQRIVRGDV---PS----------NLA 234 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~----------~~~vlL~G~~GtGKT~la~~la~~l~~~~~---p~----------~l~ 234 (900)
+++++|++..++.+.+.+.... +..+||+||||+|||++|+.+|+.+..... |- .-.
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 5679999999999999987643 345889999999999999999998744321 10 000
Q ss_pred CcEEEEEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---Cc
Q 046258 235 DVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQ 308 (900)
Q Consensus 235 ~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~ 308 (900)
.-.+..+.... .. . ..+.++.++..+... ++..|+||||+|.|... +.|.|+..|+. +.
T Consensus 84 hpD~~~i~~~~----~~-i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------aanaLLk~LEep~~~~ 148 (394)
T PRK07940 84 HPDVRVVAPEG----LS-I--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------AANALLKAVEEPPPRT 148 (394)
T ss_pred CCCEEEecccc----cc-C--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------HHHHHHHHhhcCCCCC
Confidence 00122222211 00 0 122355566555432 34568999999999543 45688888876 55
Q ss_pred EEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 309 LRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 309 irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
+.++++++... ..|.+++|+..+.+..|+.++....+. +. . .++++....++.++.++
T Consensus 149 ~fIL~a~~~~~------llpTIrSRc~~i~f~~~~~~~i~~~L~---~~----~--~~~~~~a~~la~~s~G~ 206 (394)
T PRK07940 149 VWLLCAPSPED------VLPTIRSRCRHVALRTPSVEAVAEVLV---RR----D--GVDPETARRAARASQGH 206 (394)
T ss_pred eEEEEECChHH------ChHHHHhhCeEEECCCCCHHHHHHHHH---Hh----c--CCCHHHHHHHHHHcCCC
Confidence 66666667443 679999999999999998877665554 21 1 25667777777777554
No 308
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.26 E-value=1.2e-10 Score=138.03 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=102.4
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCC----CceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCe
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDE----NLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYS 662 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~----~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~ 662 (900)
...++||+|+||||||.+|+++|+...+.. .++..++|...... .+...|-. ..-.+++..+.++
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~------~d~~tG~~-----~le~GaLvlAdgG 559 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKF------NESDNGRA-----MIQPGAVVLANGG 559 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhh------cccccCcc-----cccCCcEEEcCCC
Confidence 344899999999999999999999765532 56666666553210 11000100 0111234456778
Q ss_pred EEEEccccccCHHHHHHHHHHhhCCeeecCC-Cceee-cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcc
Q 046258 663 VVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVD-FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 663 vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~-~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
+++|||++++++..|..|+++|+.++++-.. |.... ..++.+|+|+|+-......... +. -.-.|
T Consensus 560 tL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s-----------~~--eni~L 626 (915)
T PTZ00111 560 VCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKA-----------VI--ENINI 626 (915)
T ss_pred eEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccC-----------cc--cccCC
Confidence 9999999999999999999999998875332 33222 3579999999984322111000 00 02358
Q ss_pred cHHHHhcccceeecCC-CCHHHHHHHHHHHH
Q 046258 741 RPELLNRLDEIVVFDP-LSHEQLRKVARLQM 770 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l 770 (900)
+++|++|||.++...+ ++++.=..|+.+.+
T Consensus 627 p~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 627 SPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 9999999998766555 76654445554443
No 309
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=6.2e-11 Score=122.27 Aligned_cols=201 Identities=16% Similarity=0.263 Sum_probs=116.6
Q ss_pred CCCCCC-Cc-hH-HHHHHHHHHccCC--CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVI-GR-DE-EIRRVVRILSRRT--KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~i-G~-~~-~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
+|+.++ |. .. +...+..+..... .++++|+||+|+|||+|.++++..+.+. .| +.+++++++..+....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~----~~~v~y~~~~~f~~~~- 79 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-HP----GKRVVYLSAEEFIREF- 79 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-CT----TS-EEEEEHHHHHHHH-
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-cc----cccceeecHHHHHHHH-
Confidence 466664 54 23 3344444433322 2468999999999999999999987542 23 6679999877654311
Q ss_pred ccchHH-HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHH
Q 046258 252 YRGEFE-ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAF 330 (900)
Q Consensus 252 ~~g~~~-~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al 330 (900)
...+. +.+..+...+.. --+|+||++|.+.... .......+.+..+.++|...++.+...+.. ....++.|
T Consensus 80 -~~~~~~~~~~~~~~~~~~---~DlL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~~L 151 (219)
T PF00308_consen 80 -ADALRDGEIEEFKDRLRS---ADLLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLPDL 151 (219)
T ss_dssp -HHHHHTTSHHHHHHHHCT---SSEEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-HHH
T ss_pred -HHHHHcccchhhhhhhhc---CCEEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccChhh
Confidence 00000 112223333333 3369999999985321 112344566666777777555555443322 12357889
Q ss_pred Hcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 331 ERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 331 ~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
.+||. .+.+..|+.+++.++++..... .++.++++++..++....+.+. ....+++...++
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~~~r------~L~~~l~~l~~~ 215 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRRDVR------ELEGALNRLDAY 215 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTSSHH------HHHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcCCHH------HHHHHHHHHHHH
Confidence 99996 3678999999999999887775 6788999999999987644332 444555554443
No 310
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=2.8e-11 Score=133.68 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=112.9
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-c---ee----Eec-
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-L---LV----RID- 623 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-~---~i----~i~- 623 (900)
.+.....|+|++.+++.+.+++... +-| ..+||+||+|+||+++|.++|+.+.+... . +. .+.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-------rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~ 85 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-------RLH-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI 85 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-------CCC-ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC
Confidence 4445678999999999999988664 223 25999999999999999999999986331 0 00 000
Q ss_pred ccccccccccccccCCCCCCc-----------------ccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHH
Q 046258 624 MSEYMEQHSVSRLIGAPPGYV-----------------GHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQ 682 (900)
Q Consensus 624 ~~~~~~~~~~~~l~G~~~g~~-----------------g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~ 682 (900)
|+....-..+ .-|..|.+. +.+..+.+...+. ...+.|++|||+|.+++..+|.|++
T Consensus 86 ~~~c~~c~~i--~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK 163 (365)
T PRK07471 86 DPDHPVARRI--AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLK 163 (365)
T ss_pred CCCChHHHHH--HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHH
Confidence 1111000000 011111111 1111111222222 1345799999999999999999999
Q ss_pred HhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHH
Q 046258 683 VLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQL 762 (900)
Q Consensus 683 ~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~ 762 (900)
.+++ ...+++||++|+.. ..+.|.+.+|| ..+.|.|++.+++
T Consensus 164 ~LEe-----------pp~~~~~IL~t~~~--------------------------~~llpti~SRc-~~i~l~~l~~~~i 205 (365)
T PRK07471 164 VLEE-----------PPARSLFLLVSHAP--------------------------ARLLPTIRSRC-RKLRLRPLAPEDV 205 (365)
T ss_pred HHhc-----------CCCCeEEEEEECCc--------------------------hhchHHhhccc-eEEECCCCCHHHH
Confidence 9997 23567788887763 34678899999 8999999999999
Q ss_pred HHHHHHHH
Q 046258 763 RKVARLQM 770 (900)
Q Consensus 763 ~~I~~~~l 770 (900)
.+++....
T Consensus 206 ~~~L~~~~ 213 (365)
T PRK07471 206 IDALAAAG 213 (365)
T ss_pred HHHHHHhc
Confidence 98887643
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=5.6e-11 Score=135.39 Aligned_cols=175 Identities=15% Similarity=0.277 Sum_probs=125.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC--CCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh-CCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD--DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlll 666 (900)
+++|+|++|+|||+|++++++.+.. .+..++++++.++..... .. ++. ..+.+...... ....+|+|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~-~~-l~~--------~~~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV-DI-LQK--------THKEIEQFKNEICQNDVLII 212 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HH-HHH--------hhhHHHHHHHHhccCCEEEE
Confidence 5999999999999999999997753 345677888877653321 11 110 00122233222 34579999
Q ss_pred ccccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHH
Q 046258 667 DEVEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPEL 744 (900)
Q Consensus 667 DEidk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 744 (900)
|||+.+. ...++.|+.+++.-. + .+..+|+|||..+..+ ..+.+.|
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~l----------------------~~l~~rL 260 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPELL----------------------NGFDNRL 260 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHHH----------------------hhccHHH
Confidence 9999886 567788888876411 1 2235889999876443 4578999
Q ss_pred Hhccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 745 LNRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 745 l~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.+||. .++.+.||+.+++..|+++.+. ..|+.+.++++++++|+.. ..++ +|.|...+.+..
T Consensus 261 ~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~-------~~gl~~~l~~evl~~Ia~~-~~gd--~R~L~gaL~~l~ 324 (450)
T PRK14087 261 ITRFNMGLSIAIQKLDNKTATAIIKKEIK-------NQNIKQEVTEEAINFISNY-YSDD--VRKIKGSVSRLN 324 (450)
T ss_pred HHHHhCCceeccCCcCHHHHHHHHHHHHH-------hcCCCCCCCHHHHHHHHHc-cCCC--HHHHHHHHHHHH
Confidence 99994 5889999999999999999887 2354458999999999975 5566 999999997765
No 312
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.25 E-value=7.7e-11 Score=119.04 Aligned_cols=108 Identities=25% Similarity=0.437 Sum_probs=84.7
Q ss_pred EEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc--ccCCccchHHHHHHHHHHHHhcc
Q 046258 663 VVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS--GMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 663 vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
|||+||++.++-+.+..|.+.|+.. --.++||+||.|...+.. .... -..+
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~------------iaPivifAsNrG~~~irGt~d~~s---------------PhGi 351 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESP------------IAPIVIFASNRGMCTIRGTEDILS---------------PHGI 351 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCC------------CCceEEEecCCcceeecCCcCCCC---------------CCCC
Confidence 8999999999999999999999951 246799999987543321 0000 2468
Q ss_pred cHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 741 RPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
+++|++|+ .+|...+|+++++++|++.... .. .+.+++++++.|...+. -+.|+-.+
T Consensus 352 p~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~-------~E--~l~~~e~a~~~l~~~gt-----~tsLRy~v 408 (456)
T KOG1942|consen 352 PPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQ-------VE--GLQVEEEALDLLAEIGT-----STSLRYAV 408 (456)
T ss_pred CHHHhhhe-eEEeeccCCHHHHHHHHHHHHh-------hh--cceecHHHHHHHHhhcc-----chhHHHHH
Confidence 99999999 9999999999999999988776 23 47899999999998765 34555555
No 313
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=6.5e-10 Score=126.70 Aligned_cols=200 Identities=12% Similarity=0.172 Sum_probs=120.9
Q ss_pred CCCCCC-CchH--HHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVI-GRDE--EIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~i-G~~~--~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
+|+.++ |.+. +...+..+.... ..++++|+|++|+|||+|++++++.+.... | +..++++++..+...
T Consensus 113 tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~----~~~v~yv~~~~f~~~-- 185 (450)
T PRK14087 113 TFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-S----DLKVSYMSGDEFARK-- 185 (450)
T ss_pred chhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH--
Confidence 555554 5543 233333443322 235688999999999999999999875432 2 667888888776431
Q ss_pred ccchHHH---HHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccH
Q 046258 252 YRGEFEE---RLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 252 ~~g~~~~---~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~ 328 (900)
+...+.. .+..+...+ ...-+|+|||++.+.+.. .....+...+....+.+...++.+...+.... ..++
T Consensus 186 ~~~~l~~~~~~~~~~~~~~---~~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~--~l~~ 258 (450)
T PRK14087 186 AVDILQKTHKEIEQFKNEI---CQNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQLFFSSDKSPELLN--GFDN 258 (450)
T ss_pred HHHHHHHhhhHHHHHHHHh---ccCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHh--hccH
Confidence 1111111 121222222 223479999999885321 11234555666666666643443333333222 3578
Q ss_pred HHHcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 329 AFERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 329 al~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
.+.+||. .+.+..|+.+++.++++...+... ....++++++..++..+.+. +..+..+++.+
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd------~R~L~gaL~~l 323 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDD------VRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCC------HHHHHHHHHHH
Confidence 9999997 367889999999999987776521 12369999999999988443 33444444444
No 314
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.3e-10 Score=136.60 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=133.6
Q ss_pred CCCCCCCCchHHHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCC--C--CCC------------CCcEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDV--P--SNL------------ADVRL 238 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~--p--~~l------------~~~~~ 238 (900)
..|++++|++..+..|...+.... ..++||+||+|+|||++|+.+|+.+..... + ... ....+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 567889999999999999888643 457899999999999999999999854211 0 000 01123
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEE
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIG 313 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~ 313 (900)
+.++.. .+...+.++.++..+... ....|+||||+|.|.. ++.|.|+..|++ +.+.+|+
T Consensus 93 ~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~--------~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 93 IEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST--------AAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred EEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH--------HHHHHHHHHHhcCCcCeEEEE
Confidence 333321 111234556666554432 3346899999998853 356788888886 4577777
Q ss_pred ecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 314 ATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+|+... ..-+.+++|+..+.+..++..+....++.+..+ .++.++++++..++..+.+. +..+..
T Consensus 157 ~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~------lr~A~~ 221 (620)
T PRK14948 157 ATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGG------LRDAES 221 (620)
T ss_pred EeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 775432 245789999999999888887777777666665 46778999999998888544 347777
Q ss_pred HHHHHH
Q 046258 394 LVDEAC 399 (900)
Q Consensus 394 Lld~a~ 399 (900)
+++..+
T Consensus 222 lLekls 227 (620)
T PRK14948 222 LLDQLS 227 (620)
T ss_pred HHHHHH
Confidence 777644
No 315
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=1.3e-11 Score=124.46 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=140.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc---CCCCceeEecccccccccccccccCCCCCCc-ccccccchhHHHHhCCCeEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAPPGYV-GHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~---~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~-g~~~~~~l~~~~~~~~~~vll 665 (900)
++||.||+|.||+.||+.|.+.-. .-..+|+.+||..+......+-|+||..|.. |.. ..-.+.++.+.++.+|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~--~~r~gllrsadggmlf 287 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGAR--ESREGLLRSADGGMLF 287 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccch--hhhhhhhccCCCceEe
Confidence 599999999999999998875431 1245899999999988888899999976643 322 2234567788999999
Q ss_pred EccccccCHHHHHHHHHHhhCCeeecCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHH
Q 046258 666 FDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPEL 744 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 744 (900)
||||..+..+-|..||+.+++.+|..-. .+.+. ++..+|+.|-.+...... ...|..+|
T Consensus 288 ldeigelgadeqamllkaieekrf~pfgsdr~v~-sdfqliagtvrdlrq~va-------------------eg~fredl 347 (531)
T COG4650 288 LDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVS-SDFQLIAGTVRDLRQLVA-------------------EGKFREDL 347 (531)
T ss_pred hHhhhhcCccHHHHHHHHHHhhccCCCCCccccc-cchHHhhhhHHHHHHHHh-------------------ccchHHHH
Confidence 9999999999999999999998886533 33332 344466665443322222 57899999
Q ss_pred HhcccceeecCC--CCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHc------CCCCCCCchHHHHHHHH
Q 046258 745 LNRLDEIVVFDP--LSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE------SYDPIYGARPIRRWLEK 814 (900)
Q Consensus 745 l~R~~~~i~f~p--l~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~------~~~~~~g~R~L~~~i~~ 814 (900)
+.|+ ....|.- |.. +|+.-=+...|.+... .+|-.+.|.-++....... .|.+| -|+|...+.+
T Consensus 348 ~ari-nlwtf~lpgl~qr~ediepnldyelerha~---~~g~~vrfntearra~l~fa~spqa~w~gn--frelsasvtr 421 (531)
T COG4650 348 YARI-NLWTFTLPGLRQRQEDIEPNLDYELERHAS---LTGDSVRFNTEARRAWLAFATSPQATWRGN--FRELSASVTR 421 (531)
T ss_pred HHhh-heeeeeccccccCccccCCCccHHHHHHHH---hhCceeeeehHHHHHHHHhccCcchhhccc--HHHHhHHHHH
Confidence 9999 5444433 433 7776666666654443 3566788988887655544 47677 7888777755
Q ss_pred H
Q 046258 815 K 815 (900)
Q Consensus 815 ~ 815 (900)
+
T Consensus 422 m 422 (531)
T COG4650 422 M 422 (531)
T ss_pred H
Confidence 3
No 316
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25 E-value=4.9e-11 Score=137.27 Aligned_cols=173 Identities=16% Similarity=0.296 Sum_probs=120.4
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEE
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
.+++|+||||+|||+|++++++.+... ...++.+++.++..... ..+ .. .....+.+.++ ...+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~-~~-------~~~~~~~~~~~--~~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NAL-RN-------NTMEEFKEKYR--SVDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-Hc-------CcHHHHHHHHh--cCCEEEE
Confidence 469999999999999999999998653 45678888877643211 111 00 00112222223 4579999
Q ss_pred ccccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHH
Q 046258 667 DEVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPEL 744 (900)
Q Consensus 667 DEidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 744 (900)
|||+.+.. ..+..|+.+++.-. . .+..+|+|||..+..+ ..+.+.|
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~-~---------~~~~iiits~~~p~~l----------------------~~l~~~l 265 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALH-E---------AGKQIVLTSDRPPKEL----------------------PGLEERL 265 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH-H---------CCCcEEEECCCCHHHH----------------------HHHHHHH
Confidence 99998743 35667777765311 0 1223677888766443 2367889
Q ss_pred Hhccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 745 LNRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 745 l~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.+||. .++.+.|++.+++..|++..+.. . .+.++++++++|++. ..++ +|.|...+.+..
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------~--~~~l~~e~l~~ia~~-~~~~--~R~l~~~l~~l~ 327 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE-------E--GIDLPDEVLEFIAKN-ITSN--VRELEGALNRLI 327 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHcC-cCCC--HHHHHHHHHHHH
Confidence 99995 48999999999999999988772 2 468999999999965 5566 999988887654
No 317
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.8e-10 Score=129.45 Aligned_cols=195 Identities=22% Similarity=0.286 Sum_probs=130.9
Q ss_pred CCCCCCCCchHHHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCC--CcEEEEEechhhhhcccc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA--DVRLIALDMGALVAGAKY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~--~~~~~~~~~~~l~~g~~~ 252 (900)
.++++++|++..++.+.+.+.... +.++||+||||+|||++|+.+++.+.....+..-. +..++.++....
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~------ 87 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN------ 87 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC------
Confidence 467889999999999999998754 44688999999999999999999885533221111 223344432211
Q ss_pred cchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhcc
Q 046258 253 RGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKD 327 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d 327 (900)
. ....++.++..+.. ..+..|+||||++.+... ..+.|+..+++ ....+|.+++... ...
T Consensus 88 ~--~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------~~~~ll~~le~~~~~~~~Il~~~~~~-----kl~ 152 (367)
T PRK14970 88 N--SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------AFNAFLKTLEEPPAHAIFILATTEKH-----KII 152 (367)
T ss_pred C--CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------HHHHHHHHHhCCCCceEEEEEeCCcc-----cCC
Confidence 1 11234444444332 233568999999987542 34566666664 2455665564332 256
Q ss_pred HHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 328 AAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 328 ~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
+++.+|+..+.+..|+..+...++.....+ .++.++++++..++..+.+. ...+...++..+.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gd------lr~~~~~lekl~~y 216 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGA------LRDALSIFDRVVTF 216 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Confidence 889999998998888888877777766665 67889999999999887432 34677777766644
No 318
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=1.6e-11 Score=120.42 Aligned_cols=151 Identities=25% Similarity=0.369 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCce-eEeccccc---cc-ccccccc
Q 046258 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLL-VRIDMSEY---ME-QHSVSRL 636 (900)
Q Consensus 562 g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~-i~i~~~~~---~~-~~~~~~l 636 (900)
||+.+++.+.+.+... +-| ..+||+||+|+||+++|+.+|+.+.+....- ..-.|... .. .+.--..
T Consensus 1 gq~~~~~~L~~~~~~~-------~l~-ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-------RLP-HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCT-------C---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcC-------Ccc-eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 6777777787777544 223 3589999999999999999999998744321 11111110 00 0000011
Q ss_pred cCCCCC--CcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 637 IGAPPG--YVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 637 ~G~~~g--~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
+..... .++.+..+.+...+. ..++.|++||++|++..+.+|+||+.||+ ...+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111000 112111122222222 13567999999999999999999999998 4478999998886
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS 758 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~ 758 (900)
...+.|.+++|+ ..+.|.|++
T Consensus 142 --------------------------~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 --------------------------PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp --------------------------GGGS-HHHHTTS-EEEEE----
T ss_pred --------------------------hHHChHHHHhhc-eEEecCCCC
Confidence 567899999999 999998875
No 319
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.24 E-value=1e-11 Score=139.68 Aligned_cols=185 Identities=23% Similarity=0.320 Sum_probs=136.5
Q ss_pred CCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--------hhccc
Q 046258 182 IGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL--------VAGAK 251 (900)
Q Consensus 182 iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l--------~~g~~ 251 (900)
++.+..++.++..+.| ....+++|.|+|||||..++++||+... ...| |+.+||+++ .+|+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gp-------fvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGP-------FVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCC-------eEEEEeccchHHhhhHHHhccC
Confidence 4778888888888877 5667899999999999999999999986 6666 999999886 44544
Q ss_pred ccchHHHHH-HHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC------------cEEEEEecCHH
Q 046258 252 YRGEFEERL-KAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------------QLRCIGATTLE 318 (900)
Q Consensus 252 ~~g~~~~~l-~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------~irvI~att~~ 318 (900)
.|.|++.. +...+.++++++|+ ||+|||..|+-+.|+ .|+++|+.| .|+||++|+++
T Consensus 388 -~GafTga~~kG~~g~~~~A~gGt-lFldeIgd~p~~~Qs--------~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d 457 (606)
T COG3284 388 -AGAFTGARRKGYKGKLEQADGGT-LFLDEIGDMPLALQS--------RLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD 457 (606)
T ss_pred -ccccccchhccccccceecCCCc-cHHHHhhhchHHHHH--------HHHHHHhhCceeccCCcceeEEEEEEeccCcC
Confidence 56666544 33455667788788 999999887766555 999999865 47899999876
Q ss_pred HHHHHhhccHHHHc----ccceeeecCCChHHHHH---HHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhH
Q 046258 319 EYRKYVEKDAAFER----RFQQVYVAEPSVPDTVS---ILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKA 391 (900)
Q Consensus 319 ~~~~~~~~d~al~~----Rf~~i~i~~P~~~e~~~---ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a 391 (900)
-..-+ .++.|+. |++...+..|+..||.. +|..+..++.. ....++++++..+..+. +|.+.
T Consensus 458 l~~lv--~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~--------WPGNi 526 (606)
T COG3284 458 LAQLV--EQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYR--------WPGNI 526 (606)
T ss_pred HHHHH--HcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhCC--------CCCcH
Confidence 43222 3455555 78877888888777654 55555555444 56779999998888765 56555
Q ss_pred HHHH
Q 046258 392 IDLV 395 (900)
Q Consensus 392 ~~Ll 395 (900)
..|.
T Consensus 527 rel~ 530 (606)
T COG3284 527 RELD 530 (606)
T ss_pred HHHH
Confidence 4443
No 320
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.22 E-value=2.2e-10 Score=127.24 Aligned_cols=186 Identities=25% Similarity=0.390 Sum_probs=118.1
Q ss_pred CCCchHHHHHHHHHHc----c-------C-------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 181 VIGRDEEIRRVVRILS----R-------R-------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~----~-------~-------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
++|++.+++.+...+. + . .+.|+||+||||||||++|+.||..+ +.+|+.++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 7999999988866551 1 1 13589999999999999999999887 55588899
Q ss_pred chhhhhcccccch-HHHHHHHHHH----HHHHcCCCeEEEEcchhhhhhCCCC-C-----ChhhHHHhHhhhhhc-----
Q 046258 243 MGALVAGAKYRGE-FEERLKAVLK----EVEEAEGKVILFIDEIHLVLGAGRT-E-----GSMDAANLFKPMLAR----- 306 (900)
Q Consensus 243 ~~~l~~g~~~~g~-~~~~l~~~~~----~~~~~~~~~iL~iDEi~~l~~~~~~-~-----~~~~~~~~L~~~l~~----- 306 (900)
++.+.. ..|.|. .+..+...+. .+..+. +.||||||+|.+.+.... + ....+.+.|+++|+.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~-~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQ-KGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHhcc-cceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 887643 235564 3333433332 233344 457999999999874322 0 112466778888741
Q ss_pred ----C------cEEEEEecCH-----------H--------------------------HHHHH--------hhccHHHH
Q 046258 307 ----G------QLRCIGATTL-----------E--------------------------EYRKY--------VEKDAAFE 331 (900)
Q Consensus 307 ----g------~irvI~att~-----------~--------------------------~~~~~--------~~~d~al~ 331 (900)
| ...+|.|+|- . ...+. +-..|.|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 1 1223333332 0 00000 01348889
Q ss_pred ccccee-eecCCChHHHHHHHHH----HHHHHhccc---C--cccChhHHHHHHHHh
Q 046258 332 RRFQQV-YVAEPSVPDTVSILRG----LKEKYEGHH---G--VRIQDRALVVAAQLS 378 (900)
Q Consensus 332 ~Rf~~i-~i~~P~~~e~~~ilr~----l~~~~~~~~---~--v~i~~eal~~l~~~s 378 (900)
.|++.| .+.+.+.++...|+.. +..+|.... + +.++++++..++..+
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 999875 4556688888888765 455554322 4 448899999998864
No 321
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.22 E-value=5.7e-10 Score=124.42 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred CCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech----hhhhccc-----
Q 046258 181 VIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG----ALVAGAK----- 251 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~----~l~~g~~----- 251 (900)
++|+++.++.+...+. ...|+||.||||||||++|++||+.+.... | |..+++. +-+.|..
T Consensus 22 i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~-------F~~~~~~fttp~DLfG~l~i~~~ 91 (498)
T PRK13531 22 LYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR-A-------FEYLMTRFSTPEEVFGPLSIQAL 91 (498)
T ss_pred ccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC-c-------ceeeeeeecCcHHhcCcHHHhhh
Confidence 8999999999988776 567999999999999999999999874432 3 4433332 1122211
Q ss_pred -ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-----------EEEEEecCHHH
Q 046258 252 -YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-----------LRCIGATTLEE 319 (900)
Q Consensus 252 -~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-----------irvI~att~~~ 319 (900)
..|.|..... +.+..+ -+||+|||+.+.+..++ .|+.+|+.+. .++|++++. +
T Consensus 92 ~~~g~f~r~~~---G~L~~A---~lLfLDEI~rasp~~Qs--------aLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~ 156 (498)
T PRK13531 92 KDEGRYQRLTS---GYLPEA---EIVFLDEIWKAGPAILN--------TLLTAINERRFRNGAHEEKIPMRLLVTASN-E 156 (498)
T ss_pred hhcCchhhhcC---Cccccc---cEEeecccccCCHHHHH--------HHHHHHHhCeEecCCeEEeCCCcEEEEECC-C
Confidence 0111110000 001111 17999999877665554 8888886432 345554442 2
Q ss_pred HHHHhhccHHHHcccce-eeecCCCh-HHHHHHHHHHHHH---------------H----hcccCcccChhHHHHHHHHh
Q 046258 320 YRKYVEKDAAFERRFQQ-VYVAEPSV-PDTVSILRGLKEK---------------Y----EGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 320 ~~~~~~~d~al~~Rf~~-i~i~~P~~-~e~~~ilr~l~~~---------------~----~~~~~v~i~~eal~~l~~~s 378 (900)
+-.--....++..||.. +.++.|+. ++..+|++.-... + ..-..+.+++.+.+++..+.
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~ 236 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLR 236 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHH
Confidence 10000112478889953 55566653 4446677532110 0 01123557777777777775
Q ss_pred hhhccCC----CChhhHHHHHHHHHHHhhhh--ccCChhHHH
Q 046258 379 ARYITGR----HLPDKAIDLVDEACANVRVQ--LDSQPEEID 414 (900)
Q Consensus 379 ~~~~~~~----~~p~~a~~Lld~a~a~~~~~--~~~~~~~l~ 414 (900)
...-..+ .-|...+.++..+-+...+. ....|..+.
T Consensus 237 ~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 237 QQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 4211111 23445555555554444433 223355544
No 322
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.1e-10 Score=128.17 Aligned_cols=164 Identities=23% Similarity=0.291 Sum_probs=109.2
Q ss_pred HHHHhc-HHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc------ccc
Q 046258 557 KERLIG-LAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE------YME 629 (900)
Q Consensus 557 ~~~l~g-~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~------~~~ 629 (900)
+..|+| |+.+++.+...+... +....+||+||+|+|||++|+.+|+.+.+... .-.--|+. +..
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~-~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLER-NGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHhc
Confidence 456788 888999888888543 33335799999999999999999999976421 00001211 110
Q ss_pred c-c-ccccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 630 Q-H-SVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 630 ~-~-~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
. | +...+... ...++.+..+.+.+.+. ...+.|++|||+|++....+|.||+.||+ ...+++
T Consensus 75 ~~hpD~~~i~~~-~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~ 142 (329)
T PRK08058 75 GNHPDVHLVAPD-GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTT 142 (329)
T ss_pred CCCCCEEEeccc-cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCce
Confidence 0 0 00001000 00011111122222222 23467999999999999999999999997 346788
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
||++|+. ...+.|.+.+|+ .++.|.|++.+++.+++..
T Consensus 143 ~Il~t~~--------------------------~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 143 AILLTEN--------------------------KHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEEEeCC--------------------------hHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 8888875 456889999999 9999999999998777653
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=7.3e-11 Score=134.33 Aligned_cols=173 Identities=19% Similarity=0.344 Sum_probs=117.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
+++|+||||+|||+|++++++.+... +..++.+++.++..... ..+.. .....+.+..+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~-~~~~~--------~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSMKE--------GKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHHhc--------ccHHHHHHHHH-hcCCEEEEe
Confidence 59999999999999999999987542 34678888876543211 11100 00011222222 245799999
Q ss_pred cccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
|++.+. ...+..|+..+..-. + .+..+|+||+..+..+ ..+.+.+.
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~---------~-~~k~iIitsd~~p~~l----------------------~~l~~rL~ 249 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH---------D-SGKQIVICSDREPQKL----------------------SEFQDRLV 249 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH---------H-cCCeEEEECCCCHHHH----------------------HHHHHHHh
Confidence 999763 335666766665310 0 1234777787665443 33678899
Q ss_pred hccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 746 NRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 746 ~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+||. .++.+.|++.+++..|++..+. .. .+.++++++++|++. .+++ +|.|+..+.+..
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~-------~~--~~~l~~ev~~~Ia~~-~~~~--~R~L~g~l~~l~ 310 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLE-------IE--HGELPEEVLNFVAEN-VDDN--LRRLRGAIIKLL 310 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHH-------hc--CCCCCHHHHHHHHhc-cccC--HHHHHHHHHHHH
Confidence 9993 4889999999999999987765 23 367899999999976 5556 999999997654
No 324
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.3e-10 Score=127.45 Aligned_cols=158 Identities=19% Similarity=0.343 Sum_probs=107.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
...++||+.+++.+...+... .-| ..+||+||+|+|||++|+.+|+.+.+.... ....+ ...+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-------~~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------~~h~D---~~~~ 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-------RFS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQ------REYVD---IIEF 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-------CCC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCC------CCCCC---eEEe
Confidence 356889999999988887543 222 357999999999999999999998663211 00000 0001
Q ss_pred cCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCc
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGA 712 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~ 712 (900)
.......++.+..+.+.+.+.. ..+.|+++|++|+++...+|.|+..|++ ...+++||++|+.
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~-- 132 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCEN-- 132 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCC--
Confidence 0000011111111122222222 3457999999999999999999999997 3467888887754
Q ss_pred HHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 713 EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...+.|.+.+|| .++.|.+++++++..++...
T Consensus 133 ------------------------~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 133 ------------------------LEQILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ------------------------hHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 245788999999 89999999999987777654
No 325
>PRK15115 response regulator GlrR; Provisional
Probab=99.22 E-value=1.9e-11 Score=141.35 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=128.0
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------hc
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV--------AG 249 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~--------~g 249 (900)
.++|.+..++++++.+.. ....+++|+|++|||||++|+++|+...+.+.| |+.+||+.+. +|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~-------f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKP-------FIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCC-------eEEEeCCCCCHHHHHHHhcC
Confidence 378899999888886654 456689999999999999999999987655445 9999998762 22
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEecC
Q 046258 250 AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGATT 316 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~att 316 (900)
+. .|.+.+......+.+..+.+|+ ||||||+.|....|. .|.++++.+ .+|+|++|+
T Consensus 208 ~~-~~~~~~~~~~~~g~~~~a~~gt-l~l~~i~~l~~~~q~--------~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 208 HA-RGAFTGAVSNREGLFQAAEGGT-LFLDEIGDMPAPLQV--------KLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred CC-cCCCCCCccCCCCcEEECCCCE-EEEEccccCCHHHHH--------HHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 22 2222221111122234455566 999999999877665 777777654 468999887
Q ss_pred HHHHHHHh--hccHHHHcccceeeecCCChHHHHHHH----HHHHHHHhcccC---cccChhHHHHHHHHhhhhccCCCC
Q 046258 317 LEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVSIL----RGLKEKYEGHHG---VRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 317 ~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~il----r~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
.+...... ...+.|..|+..+.+..|+..+|.+-+ +.+..++...++ ..++++++..+..+. +
T Consensus 278 ~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--------W 349 (444)
T PRK15115 278 RDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS--------W 349 (444)
T ss_pred CCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC--------C
Confidence 65322211 123445567888888999998887633 555555443333 248999999888876 5
Q ss_pred hhhHHHHH
Q 046258 388 PDKAIDLV 395 (900)
Q Consensus 388 p~~a~~Ll 395 (900)
|.+...|-
T Consensus 350 pgNvreL~ 357 (444)
T PRK15115 350 PGNVRQLV 357 (444)
T ss_pred CChHHHHH
Confidence 55555443
No 326
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.3e-10 Score=130.27 Aligned_cols=186 Identities=16% Similarity=0.248 Sum_probs=118.1
Q ss_pred CCCCCCC-CchHH--HHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVI-GRDEE--IRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~i-G~~~~--i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
-+|+.++ |.+.. ...+.+++... ..++++|+|++|+|||+|+++|++.+.... + +..++++++..+...
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~----g~~V~Yitaeef~~e- 358 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-P----GTRVRYVSSEEFTNE- 358 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEeeHHHHHHH-
Confidence 3455554 54432 33344444432 235689999999999999999999885421 2 667899988776531
Q ss_pred cccchHH-HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC-HHHHHHHhhccH
Q 046258 251 KYRGEFE-ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT-LEEYRKYVEKDA 328 (900)
Q Consensus 251 ~~~g~~~-~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att-~~~~~~~~~~d~ 328 (900)
+...+. +.+..+...+.. .-+|+||||+.+.+... ....+.+++..+.+++.-.+|.+.. ..++ ...++
T Consensus 359 -l~~al~~~~~~~f~~~y~~---~DLLlIDDIq~l~gke~--tqeeLF~l~N~l~e~gk~IIITSd~~P~eL---~~l~~ 429 (617)
T PRK14086 359 -FINSIRDGKGDSFRRRYRE---MDILLVDDIQFLEDKES--TQEEFFHTFNTLHNANKQIVLSSDRPPKQL---VTLED 429 (617)
T ss_pred -HHHHHHhccHHHHHHHhhc---CCEEEEehhccccCCHH--HHHHHHHHHHHHHhcCCCEEEecCCChHhh---hhccH
Confidence 111111 111122222332 34799999998864321 2345666776666666544443332 2332 23688
Q ss_pred HHHcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 329 AFERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 329 al~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
.|.+||. .+.+..|+.+.+.+||+..... .++.++++++.+++....+
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISR 480 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccC
Confidence 9999996 3678999999999999877665 5788999999999887643
No 327
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.6e-10 Score=136.09 Aligned_cols=195 Identities=21% Similarity=0.251 Sum_probs=137.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCC---------------CCCCCcEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVP---------------SNLADVRLI 239 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p---------------~~l~~~~~~ 239 (900)
.+|++++|++..++.+...+....-.| .||+||+|+|||++|+.+|+.+...... ..-....++
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 367889999999999999998866666 7899999999999999999988432110 001123344
Q ss_pred EEechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEe
Q 046258 240 ALDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGA 314 (900)
Q Consensus 240 ~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~a 314 (900)
.+|.+.. . ....++.++..+.. .++.-|++|||+|.|.. ++.+.|+.+|+. +..++|.+
T Consensus 94 ~ld~~~~------~--~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 94 ELDAASN------N--SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------AAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred Eeccccc------C--CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------HHHHHHHHHHhCCCCCeEEEEE
Confidence 5543211 1 12234455544432 13345899999999853 456789999986 45677777
Q ss_pred cCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
|+... .+-+.+++|+..+.+..++..+....++.++.+ .++.++++++..++..+.+.+ ..+..+
T Consensus 158 tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl------r~al~~ 222 (614)
T PRK14971 158 TTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM------RDALSI 222 (614)
T ss_pred eCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHH
Confidence 75332 256889999999999888888888777776665 578899999999999885443 367777
Q ss_pred HHHHHHH
Q 046258 395 VDEACAN 401 (900)
Q Consensus 395 ld~a~a~ 401 (900)
++..+++
T Consensus 223 Lekl~~y 229 (614)
T PRK14971 223 FDQVVSF 229 (614)
T ss_pred HHHHHHh
Confidence 7776654
No 328
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.9e-10 Score=128.44 Aligned_cols=187 Identities=16% Similarity=0.280 Sum_probs=117.3
Q ss_pred CCCCCC-CchH--HHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 177 KLDPVI-GRDE--EIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 177 ~~~~~i-G~~~--~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
+|+.++ |.+. +...+.++..... .++++|+||||+|||++++++++.+.+.. | +..++++++..+....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~~-- 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLNDL-- 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHHH--
Confidence 455555 6443 3344444444322 46789999999999999999999875432 3 5678898887654311
Q ss_pred cchH-HHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHH
Q 046258 253 RGEF-EERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFE 331 (900)
Q Consensus 253 ~g~~-~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~ 331 (900)
...+ ...+..+..... ...-+|+|||++.+.+... ...+....+..+...+...+|++...+.... ...+.+.
T Consensus 176 ~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~~--~q~elf~~~n~l~~~~k~iIitsd~~p~~l~--~l~~rL~ 249 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQKLS--EFQDRLV 249 (440)
T ss_pred HHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcHH--HHHHHHHHHHHHHHcCCeEEEECCCCHHHHH--HHHHHHh
Confidence 0000 001112222221 1245799999998854321 1234555666666667655554443332221 2467899
Q ss_pred cccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 332 RRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 332 ~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
+||. .+.+..|+.+.+.+|++...+. .++.++++++..++....+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDD 297 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhcccc
Confidence 9997 5778999999999999877664 4678999999999887644
No 329
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=126.26 Aligned_cols=152 Identities=20% Similarity=0.325 Sum_probs=107.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-CCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR-PYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~-~~~vlllDE 668 (900)
..||+||||||||++..|||..|. ..+.-+++++..... .|...+... +.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~---ydIydLeLt~v~~n~-------------------dLr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLN---YDIYDLELTEVKLDS-------------------DLRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcC---CceEEeeeccccCcH-------------------HHHHHHHhCCCCcEEEEee
Confidence 599999999999999999999993 366667776654322 244444443 569999999
Q ss_pred ccccC------------------HHHHHHHHHHhhCCeeecCCCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHH
Q 046258 669 VEKAH------------------ISVFNTLLQVLDDGRLTDGQGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVAR 729 (900)
Q Consensus 669 idk~~------------------~~~~~~Ll~~ld~g~~~d~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~ 729 (900)
||..- .-.+..||..+|.=. . .+ ..-|||||||.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw-S-------scg~ERIivFTTNh------------------- 347 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW-S-------SCGDERIIVFTTNH------------------- 347 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc-c-------cCCCceEEEEecCC-------------------
Confidence 99761 123577888888411 1 11 23489999998
Q ss_pred HHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHH-----HHHHHHhcCCccccCHHHH-HHHHHc
Q 046258 730 DQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKD-----VAIRLAERGVALAVTDAAL-DIVLAE 797 (900)
Q Consensus 730 ~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~-----~~~~~~~~~~~~~~~~~a~-~~l~~~ 797 (900)
.+.++|+|+. |+|..|.+..=+.+.+..++.++|.- +...+.+---...+||+-+ +.|+..
T Consensus 348 -------~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 348 -------KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred -------hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 6889999996 99999999999999999999998853 2233333211356777654 455543
No 330
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4e-10 Score=133.17 Aligned_cols=194 Identities=20% Similarity=0.261 Sum_probs=130.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCC-CC--C------------CCCcEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDV-PS--N------------LADVRLI 239 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~-p~--~------------l~~~~~~ 239 (900)
.+|++++|++..++.|...+......| +||+||+|+|||++|+.+|+.+..... +. . -.+..++
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~ 92 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVI 92 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEE
Confidence 467889999999999998888755555 589999999999999999998843211 10 0 0012244
Q ss_pred EEechhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEe
Q 046258 240 ALDMGALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGA 314 (900)
Q Consensus 240 ~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~a 314 (900)
.+|.+.. .+ .+.++.+.+.+... ....|+||||+|.|.. +..|.|+..+++ ....+|.+
T Consensus 93 ~i~~~~~------~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 93 EMDAASH------TS--VDDAREIIERVQFRPALARYKVYIIDEVHMLST--------AAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred EEecccc------CC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------HHHHHHHHHHhcCCCCeEEEEE
Confidence 4443211 11 12244444433321 3356899999998853 345678888875 35666666
Q ss_pred cCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
++... ...+.+.+|+..+.+..++..+...+++.+..+ .++.++++++..++..+.+ -+..+..+
T Consensus 157 t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~G------dlr~al~~ 221 (585)
T PRK14950 157 TTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATG------SMRDAENL 221 (585)
T ss_pred eCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHH
Confidence 64322 145778899998998888888877777766654 5778999999999888743 34477777
Q ss_pred HHHHHH
Q 046258 395 VDEACA 400 (900)
Q Consensus 395 ld~a~a 400 (900)
++..+.
T Consensus 222 LekL~~ 227 (585)
T PRK14950 222 LQQLAT 227 (585)
T ss_pred HHHHHH
Confidence 776654
No 331
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.7e-10 Score=132.58 Aligned_cols=172 Identities=17% Similarity=0.267 Sum_probs=121.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC--CCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD--DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
+++|+|++|+|||+|+++|++.+.. .+..++++++.+|......+ +.. + ....+.+.++ ...+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~------~--~~~~f~~~y~--~~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD------G--KGDSFRRRYR--EMDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh------c--cHHHHHHHhh--cCCEEEEe
Confidence 4999999999999999999998854 24577888887765432111 110 0 0011222222 35899999
Q ss_pred cccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
+|+.+.. ..+..|+.+++.-. -.+..+|+|||..+..+ ..+.+.|.
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~----------e~gk~IIITSd~~P~eL----------------------~~l~~rL~ 432 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH----------NANKQIVLSSDRPPKQL----------------------VTLEDRLR 432 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH----------hcCCCEEEecCCChHhh----------------------hhccHHHH
Confidence 9998743 34677777776411 12234778999876544 34788999
Q ss_pred hccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 746 NRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 746 ~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+||. .++.+.+++.+.+..|++..+. .. .+.++++++++|+.. +.++ +|.|+.++.+..
T Consensus 433 SRf~~GLvv~I~~PD~EtR~aIL~kka~-------~r--~l~l~~eVi~yLa~r-~~rn--vR~LegaL~rL~ 493 (617)
T PRK14086 433 NRFEWGLITDVQPPELETRIAILRKKAV-------QE--QLNAPPEVLEFIASR-ISRN--IRELEGALIRVT 493 (617)
T ss_pred hhhhcCceEEcCCCCHHHHHHHHHHHHH-------hc--CCCCCHHHHHHHHHh-ccCC--HHHHHHHHHHHH
Confidence 9994 5789999999999999988765 23 468999999999975 5666 999999987654
No 332
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=5.7e-10 Score=126.67 Aligned_cols=184 Identities=15% Similarity=0.247 Sum_probs=114.5
Q ss_pred CCCCCCC-CchHHH--HHHHHHHcc------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 176 GKLDPVI-GRDEEI--RRVVRILSR------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 176 ~~~~~~i-G~~~~i--~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
-+|+.++ |.+..+ ..+.++... ...++++|+||+|+|||++++++++.+... +.++++++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3455654 655443 333333321 123678999999999999999999988553 445888877654
Q ss_pred hhcccccchHHH-HHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC-HHHHHHHh
Q 046258 247 VAGAKYRGEFEE-RLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT-LEEYRKYV 324 (900)
Q Consensus 247 ~~g~~~~g~~~~-~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att-~~~~~~~~ 324 (900)
.. .+...+.. ... .+... ....-+|+|||++.+.+... ...++...+..+...|...++++.+ +.++.
T Consensus 181 ~~--~~~~~l~~~~~~-~f~~~--~~~~dvLiIDDiq~l~~k~~--~qeelf~l~N~l~~~~k~IIlts~~~p~~l~--- 250 (445)
T PRK12422 181 TE--HLVSAIRSGEMQ-RFRQF--YRNVDALFIEDIEVFSGKGA--TQEEFFHTFNSLHTEGKLIVISSTCAPQDLK--- 250 (445)
T ss_pred HH--HHHHHHhcchHH-HHHHH--cccCCEEEEcchhhhcCChh--hHHHHHHHHHHHHHCCCcEEEecCCCHHHHh---
Confidence 32 11111110 111 11111 11234799999999864322 2334445555555566655555544 33332
Q ss_pred hccHHHHcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 325 EKDAAFERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 325 ~~d~al~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
..++.+.+||. .+.+..|+.+++.+|++..++. .++.++++++..++....+
T Consensus 251 ~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 251 AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSS 305 (445)
T ss_pred hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 35789999995 4778889999999999877765 4688999999998886643
No 333
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.19 E-value=9.2e-11 Score=132.26 Aligned_cols=201 Identities=21% Similarity=0.279 Sum_probs=142.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEE-echhhhhcc-cc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIAL-DMGALVAGA-KY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~-~~~~l~~g~-~~ 252 (900)
..|++++|++...+.|...+....-.| -||.||.||||||+||.+|+.+.....|. +.++... .|-++..|. ..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPT---AEPCGKCISCKEINEGSLID 89 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---CCcchhhhhhHhhhcCCccc
Confidence 357789999999999999888755455 68889999999999999999996654321 1112221 222333320 00
Q ss_pred cchH-------HHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHH
Q 046258 253 RGEF-------EERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEY 320 (900)
Q Consensus 253 ~g~~-------~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~ 320 (900)
.-++ .+.++.+.+.+.-. ...-|.+|||+|+|... +.|.|+.-++.. .+.+|.+||...
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------afNALLKTLEEPP~hV~FIlATTe~~- 160 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------AFNALLKTLEEPPSHVKFILATTEPQ- 160 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------HHHHHhcccccCccCeEEEEecCCcC-
Confidence 0011 22344555544322 33558999999999653 566888888754 578888887654
Q ss_pred HHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 321 RKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 321 ~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
...+...+|++.+.+..-+.++....|..+..+ .++.++++++..++..+.+-+. ++..++|.+.+
T Consensus 161 ----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs~R------DalslLDq~i~ 226 (515)
T COG2812 161 ----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGSLR------DALSLLDQAIA 226 (515)
T ss_pred ----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCChh------hHHHHHHHHHH
Confidence 378899999999888777777777777777665 7899999999999999966544 78999999987
Q ss_pred Hh
Q 046258 401 NV 402 (900)
Q Consensus 401 ~~ 402 (900)
..
T Consensus 227 ~~ 228 (515)
T COG2812 227 FG 228 (515)
T ss_pred cc
Confidence 64
No 334
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.19 E-value=3.7e-11 Score=139.74 Aligned_cols=183 Identities=25% Similarity=0.327 Sum_probs=125.8
Q ss_pred CCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------h
Q 046258 179 DPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV--------A 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~--------~ 248 (900)
..++|.++.++.+.+.+.+ ....++++.|++||||+++|+++|....+...| |+.+||+.+. +
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~-------~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGP-------FIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCC-------eEEEeCCCCCHHHHHHHhc
Confidence 3588999998888887765 455679999999999999999999988666555 9999998762 3
Q ss_pred cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEec
Q 046258 249 GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGAT 315 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~at 315 (900)
|+. +|.|.+......+.+..+++|+ ||||||+.|....|. .|.++++.+ .+|+|++|
T Consensus 207 g~~-~~~~~~~~~~~~g~~~~a~~gt-l~l~ei~~l~~~~q~--------~ll~~l~~~~~~~~~~~~~~~~~~rii~~~ 276 (463)
T TIGR01818 207 GHE-KGAFTGANTRRQGRFEQADGGT-LFLDEIGDMPLDAQT--------RLLRVLADGEFYRVGGRTPIKVDVRIVAAT 276 (463)
T ss_pred CCC-CCCCCCcccCCCCcEEECCCCe-EEEEchhhCCHHHHH--------HHHHHHhcCcEEECCCCceeeeeeEEEEeC
Confidence 332 3333333332233344556666 999999999876554 777777654 46899998
Q ss_pred CHHHHHHH--hhccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHh
Q 046258 316 TLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLS 378 (900)
Q Consensus 316 t~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s 378 (900)
+.+..... -...+.|..|+..+.+..|+..+|.+ +++.+..++...++ ..++++++..+..+.
T Consensus 277 ~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 277 HQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred CCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 75542211 11234566688878888888776665 44455555544443 358899988888764
No 335
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=3.8e-10 Score=113.72 Aligned_cols=170 Identities=21% Similarity=0.343 Sum_probs=128.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc----ccc-----cCCCCCCcccccccchhHHHH---
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV----SRL-----IGAPPGYVGHEEGGQLTEAVR--- 657 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~----~~l-----~G~~~g~~g~~~~~~l~~~~~--- 657 (900)
|++|+||+|+||.+.+.+|-+.++|.+..=.+++...+..+..- +.+ +--.|.-.|+-+.-.+++.++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 79999999999999999999999997766667777666543211 100 111233445444333444333
Q ss_pred ---------hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHH
Q 046258 658 ---------RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVA 728 (900)
Q Consensus 658 ---------~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~ 728 (900)
+.++.|++|.|+|++..+.|.+|.+-|+. .-+++++|+.+|.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns------------------ 166 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS------------------ 166 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC------------------
Confidence 24678999999999999999999999996 4478999999997
Q ss_pred HHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHH
Q 046258 729 RDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPI 808 (900)
Q Consensus 729 ~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L 808 (900)
...+-+++.+|| ..|..+.++++|+..++...+. +.| +.++++.+..+++.+ .|.|
T Consensus 167 --------~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~-------kE~--l~lp~~~l~rIa~kS------~~nL 222 (351)
T KOG2035|consen 167 --------TSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLK-------KEG--LQLPKELLKRIAEKS------NRNL 222 (351)
T ss_pred --------cccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHH-------Hhc--ccCcHHHHHHHHHHh------cccH
Confidence 566889999999 8999999999999999988887 343 577799999998763 3456
Q ss_pred HHHH
Q 046258 809 RRWL 812 (900)
Q Consensus 809 ~~~i 812 (900)
++.+
T Consensus 223 RrAl 226 (351)
T KOG2035|consen 223 RRAL 226 (351)
T ss_pred HHHH
Confidence 6655
No 336
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=1.5e-10 Score=111.61 Aligned_cols=132 Identities=28% Similarity=0.369 Sum_probs=90.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++++||||||||++++.+++.+.....+++.+++..+..........+.. ...............+++|||
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-------hHhHHHHhhccCCCeEEEEeC
Confidence 3699999999999999999999986666789999998765433222111100 000111122234568999999
Q ss_pred ccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcc
Q 046258 669 VEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRL 748 (900)
Q Consensus 669 idk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~ 748 (900)
++.+++.....+++.++...... ....++.+|+++|.... ..+.+.+.+|+
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~------------------------~~~~~~~~~r~ 143 (151)
T cd00009 93 IDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL------------------------GDLDRALYDRL 143 (151)
T ss_pred hhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc------------------------CCcChhHHhhh
Confidence 99998888888988888632110 11357889999987531 25678999999
Q ss_pred cceeecCC
Q 046258 749 DEIVVFDP 756 (900)
Q Consensus 749 ~~~i~f~p 756 (900)
+..+.++|
T Consensus 144 ~~~i~~~~ 151 (151)
T cd00009 144 DIRIVIPL 151 (151)
T ss_pred ccEeecCC
Confidence 87777764
No 337
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.17 E-value=4.1e-11 Score=139.21 Aligned_cols=194 Identities=17% Similarity=0.231 Sum_probs=129.1
Q ss_pred CCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------
Q 046258 178 LDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-------- 247 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------- 247 (900)
+..++|.++.+..+.+.+.+ ....++++.|++||||+++|+++|....+...| |+.+||..+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~-------~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGP-------FIKVNCAALPESLLESEL 214 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCC-------eEEEECCCCCHHHHHHHh
Confidence 34689999999998887765 566789999999999999999999987555555 9999998762
Q ss_pred hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEe
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGA 314 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~a 314 (900)
+|+. .|.+.+......+.+..+++|+ ||||||+.|....|. .|..+++.+ .+|+|++
T Consensus 215 fg~~-~~~~~~~~~~~~g~~~~a~~gt-l~ld~i~~l~~~~q~--------~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 284 (457)
T PRK11361 215 FGHE-KGAFTGAQTLRQGLFERANEGT-LLLDEIGEMPLVLQA--------KLLRILQEREFERIGGHQTIKVDIRIIAA 284 (457)
T ss_pred cCCC-CCCCCCCCCCCCCceEECCCCE-EEEechhhCCHHHHH--------HHHHHHhcCcEEeCCCCceeeeceEEEEe
Confidence 2221 1221111111122344456566 999999999876555 777777643 3799999
Q ss_pred cCHHHHHHH--hhccHHHHcccceeeecCCChHHHHHH----HHHHHHHHhcccC---cccChhHHHHHHHHhhhhccCC
Q 046258 315 TTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVSI----LRGLKEKYEGHHG---VRIQDRALVVAAQLSARYITGR 385 (900)
Q Consensus 315 tt~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~i----lr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~~ 385 (900)
|+.+..... -...+.+..|+..+.+..|+..+|..- ++.+..++....+ +.++++++..+..+.
T Consensus 285 t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~------- 357 (457)
T PRK11361 285 TNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS------- 357 (457)
T ss_pred CCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC-------
Confidence 976532111 112344566777888888988887663 3455555544333 348898888887766
Q ss_pred CChhhHHHHHH
Q 046258 386 HLPDKAIDLVD 396 (900)
Q Consensus 386 ~~p~~a~~Lld 396 (900)
+|.+...|-.
T Consensus 358 -wpgNv~eL~~ 367 (457)
T PRK11361 358 -WPGNIRELSN 367 (457)
T ss_pred -CCCcHHHHHH
Confidence 5655555443
No 338
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.16 E-value=1e-11 Score=118.78 Aligned_cols=130 Identities=23% Similarity=0.421 Sum_probs=88.6
Q ss_pred CCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHH
Q 046258 182 IGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEER 259 (900)
Q Consensus 182 iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~ 259 (900)
||++..++++.+.+.+ ....+|+|+||+||||+++|++||........| |+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~-------~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGP-------FIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS--------CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCC-------eEEechhhCc------------
Confidence 6899999999999887 677899999999999999999999987554444 7777777543
Q ss_pred HHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh---cCcEEEEEecCHHHHH--HHhhccHHHHccc
Q 046258 260 LKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA---RGQLRCIGATTLEEYR--KYVEKDAAFERRF 334 (900)
Q Consensus 260 l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~irvI~att~~~~~--~~~~~d~al~~Rf 334 (900)
.+. +..+.+|+ |||+|++.|....|. .|..++. +..+|+|++++.+... +--..++.|..||
T Consensus 62 -~~~---l~~a~~gt-L~l~~i~~L~~~~Q~--------~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AEL---LEQAKGGT-LYLKNIDRLSPEAQR--------RLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHH---HHHCTTSE-EEEECGCCS-HHHHH--------HHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHH---HHHcCCCE-EEECChHHCCHHHHH--------HHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 112 23345566 999999999776554 6666664 3578999998643321 1122456777788
Q ss_pred ceeeecCCC
Q 046258 335 QQVYVAEPS 343 (900)
Q Consensus 335 ~~i~i~~P~ 343 (900)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 877776665
No 339
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.16 E-value=6.9e-11 Score=101.42 Aligned_cols=81 Identities=41% Similarity=0.710 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEE
Q 046258 757 LSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVY 836 (900)
Q Consensus 757 l~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~ 836 (900)
|+.+++.+|+...|.++.+++..+|+.+.++++++++|+..+|.+++|||+|+++|++.+.+++++.++.+.+.+|++|+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E
Q 046258 837 I 837 (900)
Q Consensus 837 v 837 (900)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 6
No 340
>PRK04132 replication factor C small subunit; Provisional
Probab=99.16 E-value=2.1e-10 Score=137.13 Aligned_cols=164 Identities=21% Similarity=0.294 Sum_probs=123.3
Q ss_pred CCeEEEEec--cCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCcccccccchhHHHHh----
Q 046258 587 PTGSFLFLG--PTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR---- 658 (900)
Q Consensus 587 p~~~~ll~G--p~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~---- 658 (900)
|.-+-+..| |++.|||++|++||+.+++. ..+++.+|.++......+..++. ++...
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~ 627 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIG 627 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcC
Confidence 444566779 99999999999999999774 34799999987432222222211 11111
Q ss_pred -CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHH
Q 046258 659 -RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR 737 (900)
Q Consensus 659 -~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (900)
.++.|++|||+|+++.+.|++|+..|++ ...++.||+++|. .
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~--------------------------~ 670 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY--------------------------S 670 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC--------------------------h
Confidence 1357999999999999999999999996 2367899999997 3
Q ss_pred hcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 738 KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 738 ~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
..+.+++.+|| .++.|.|++.+++...+...+. ..| +.++++++..|+..+- +. .|...+.++..
T Consensus 671 ~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~-------~Eg--i~i~~e~L~~Ia~~s~-GD--lR~AIn~Lq~~ 735 (846)
T PRK04132 671 SKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAE-------NEG--LELTEEGLQAILYIAE-GD--MRRAINILQAA 735 (846)
T ss_pred hhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHHHcC-CC--HHHHHHHHHHH
Confidence 56789999999 9999999999999888777665 233 5689999999997643 33 67777777544
No 341
>PRK06620 hypothetical protein; Validated
Probab=99.15 E-value=6.1e-10 Score=114.27 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=95.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcc
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDE 280 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 280 (900)
++++|+||||+|||++++++++.. +..++. .... . ... .. . ..+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~----~~~~-----~------~~~---~~--~-~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIK----DIFF-----N------EEI---LE--K-YNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCEEcc----hhhh-----c------hhH---Hh--c-CCEEEEec
Confidence 558999999999999999988754 221221 0000 0 011 11 1 34699999
Q ss_pred hhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccc---eeeecCCChHHHHHHHHHHHHH
Q 046258 281 IHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQ---QVYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 281 i~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~---~i~i~~P~~~e~~~ilr~l~~~ 357 (900)
||.+. .......+..+.+.|...+|++++.+.. +.. |.|++|+. .+.+..|+.+++.++++.....
T Consensus 94 i~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 94 IENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 99551 1245556666678888888888876664 235 89999998 6888999998888888766654
Q ss_pred HhcccCcccChhHHHHHHHHhhhhc
Q 046258 358 YEGHHGVRIQDRALVVAAQLSARYI 382 (900)
Q Consensus 358 ~~~~~~v~i~~eal~~l~~~s~~~~ 382 (900)
.++.++++++.+++....+.+
T Consensus 163 ----~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 ----SSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred ----cCCCCCHHHHHHHHHHccCCH
Confidence 478899999999999885543
No 342
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.14 E-value=5.8e-10 Score=136.79 Aligned_cols=182 Identities=22% Similarity=0.320 Sum_probs=115.9
Q ss_pred CCCCCchHHHHHHHHHHccC-------C-C-CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc
Q 046258 179 DPVIGRDEEIRRVVRILSRR-------T-K-NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~-------~-~-~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g 249 (900)
..++|++..+..+...+.+. . + .+++|+||||||||++|++||+.+.....+ ++.+||+.+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~-------~i~id~se~~~~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA-------MVRIDMSEFMEK 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCc-------EEEEEhHHhhhh
Confidence 46899999999998887641 1 1 357999999999999999999988654433 899999876321
Q ss_pred --------c--cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc----------E
Q 046258 250 --------A--KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ----------L 309 (900)
Q Consensus 250 --------~--~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------i 309 (900)
. .|.|.-+. ..+...+.. .+..||||||++.+.+ ++.+.|++++++|. +
T Consensus 641 ~~~~~LiG~~pgy~g~~~~--g~l~~~v~~-~p~~vLllDEieka~~--------~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEG--GYLTEAVRR-RPYSVILLDEVEKAHP--------DVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred hhHHHHhCCCCcccccchh--HHHHHHHHh-CCCCeEEEeehhhCCH--------HHHHHHHHHHhhCceecCCceEEee
Confidence 1 11121111 011222222 3356799999976643 45668888887653 3
Q ss_pred E---EEEecCHH--HHH------------H----H--hhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhc-----
Q 046258 310 R---CIGATTLE--EYR------------K----Y--VEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEG----- 360 (900)
Q Consensus 310 r---vI~att~~--~~~------------~----~--~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~----- 360 (900)
+ +|.+||.. .+. . . -.-.|.|..|++. +.+.+++.++...|++.....+..
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 67777642 110 0 0 0125789999965 455556777777777665554321
Q ss_pred ccCcccChhHHHHHHHHh
Q 046258 361 HHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 361 ~~~v~i~~eal~~l~~~s 378 (900)
...+.++++++..++...
T Consensus 790 gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 790 GYEIHISDEALKLLSENG 807 (857)
T ss_pred CCcCcCCHHHHHHHHHcC
Confidence 123457888888877643
No 343
>PRK06620 hypothetical protein; Validated
Probab=99.14 E-value=8.6e-10 Score=113.17 Aligned_cols=145 Identities=16% Similarity=0.265 Sum_probs=96.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+||||+|||+|++++++.... ..+..... ..+..+ ...+|++|||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~~------------------------~~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIFF------------------------NEEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCC-----EEcchhhh------------------------chhHHh--cCCEEEEecc
Confidence 5999999999999999998876521 11111000 001111 3479999999
Q ss_pred cccCHH-HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcc
Q 046258 670 EKAHIS-VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRL 748 (900)
Q Consensus 670 dk~~~~-~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~ 748 (900)
+..... +...+..+.++| ..+++|++..+..+ .+ |+|.+|+
T Consensus 95 ~~~~~~~lf~l~N~~~e~g--------------~~ilits~~~p~~l-----------------------~l-~~L~SRl 136 (214)
T PRK06620 95 ENWQEPALLHIFNIINEKQ--------------KYLLLTSSDKSRNF-----------------------TL-PDLSSRI 136 (214)
T ss_pred ccchHHHHHHHHHHHHhcC--------------CEEEEEcCCCcccc-----------------------ch-HHHHHHH
Confidence 966422 223333333442 23566665544221 25 8999999
Q ss_pred c--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 749 D--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 749 ~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
. .++.+.|++.+++..++++.... . .+.++++++++|+.. .+++ +|.+.+.++..
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~-------~--~l~l~~ev~~~L~~~-~~~d--~r~l~~~l~~l 193 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSI-------S--SVTISRQIIDFLLVN-LPRE--YSKIIEILENI 193 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHH-ccCC--HHHHHHHHHHH
Confidence 4 28999999999998888877662 3 368999999999976 5556 99999999773
No 344
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.14 E-value=2.4e-09 Score=106.13 Aligned_cols=164 Identities=22% Similarity=0.329 Sum_probs=118.0
Q ss_pred CCCCchHHHHHH----HHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 180 PVIGRDEEIRRV----VRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 180 ~~iG~~~~i~~l----~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
.++|-+..-..+ .+++.....+||||+|..|||||++++++....... +.++|+|+-..+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~------- 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT------- 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHhh-------
Confidence 467766655444 446666788999999999999999999999988654 45599998877753
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC------cEEEEEecCHHHHHH-H-----
Q 046258 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------QLRCIGATTLEEYRK-Y----- 323 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------~irvI~att~~~~~~-~----- 323 (900)
+-.+++.++.....+|||+|++ ..+.+.+....|+.+|+.| +|.+.+++|+..... +
T Consensus 127 ----Lp~l~~~Lr~~~~kFIlFcDDL-------SFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 127 ----LPDLVELLRARPEKFILFCDDL-------SFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred ----HHHHHHHHhcCCceEEEEecCC-------CCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 5567777887788899999998 1234456678999999754 466666667643211 1
Q ss_pred -----------hhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHH
Q 046258 324 -----------VEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALV 372 (900)
Q Consensus 324 -----------~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~ 372 (900)
++..-+|..||.. +.+..++.++-..|++.+.+. .++.++++.+.
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~ 252 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELH 252 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHH
Confidence 1112356669986 677788999999999888876 56667665443
No 345
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.13 E-value=6.6e-10 Score=119.94 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=104.3
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc----ccccc---------c----------cccccccCCCCCC
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM----SEYME---------Q----------HSVSRLIGAPPGY 643 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~----~~~~~---------~----------~~~~~l~G~~~g~ 643 (900)
.++.+|+.|+.|||||+++|+||..|-. ... .+.| .-... . .-...+.+.|.|-
T Consensus 37 ~iggvLI~G~kGtaKSt~~Rala~LLp~--~~~-V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~a 113 (423)
T COG1239 37 QIGGALIAGEKGTAKSTLARALADLLPE--IEV-VIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGA 113 (423)
T ss_pred ccceeEEecCCCccHHHHHHHHHHhCCc--cce-ecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCcc
Confidence 3678999999999999999999999843 111 1122 11100 0 0000122222221
Q ss_pred ccc--------------ccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCe-eecCCCceeec-CCeEEEEc
Q 046258 644 VGH--------------EEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGR-LTDGQGRTVDF-RNTVIIMT 707 (900)
Q Consensus 644 ~g~--------------~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~-~~d~~g~~~~~-~~~~iI~t 707 (900)
+.- .....-.+.+.+++.+|+++||+..++..+++.||.++..|. ..--.|..+.+ .++++|+|
T Consensus 114 teDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligT 193 (423)
T COG1239 114 TEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT 193 (423)
T ss_pred chhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEee
Confidence 111 000111234456678999999999999999999999999983 22333555554 48999999
Q ss_pred cCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCC-CCHHHHHHHHHHHHH
Q 046258 708 SNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDP-LSHEQLRKVARLQMK 771 (900)
Q Consensus 708 sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l~ 771 (900)
+|+. .+.+.|.|++||...|...+ .+.++...|+++.+.
T Consensus 194 mNPE-------------------------eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 194 MNPE-------------------------EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred cCcc-------------------------ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 9985 57789999999998888877 555888888877443
No 346
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.13 E-value=3.5e-09 Score=107.49 Aligned_cols=182 Identities=23% Similarity=0.311 Sum_probs=122.5
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
..-..+.|+|.+...+.+.+...+...| .|..++||+|+.|||||+++|++.......+-.+|.++-.++..-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-----~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l-- 94 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG-----LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL-- 94 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH--
Confidence 3334577999999999999988888765 345579999999999999999999999887777777766554221
Q ss_pred cccccCCCCCCcccccccchhHHHHhCCC-eEEEEccccc-cCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 633 VSRLIGAPPGYVGHEEGGQLTEAVRRRPY-SVVLFDEVEK-AHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~~~~l~~~~~~~~~-~vlllDEidk-~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
..+.+.++..|. =|||+|++-- ....-...|-.+||.|- .....|++|.+|||.
T Consensus 95 -----------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-------e~~P~NvliyATSNR 150 (249)
T PF05673_consen 95 -----------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-------EARPDNVLIYATSNR 150 (249)
T ss_pred -----------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-------ccCCCcEEEEEecch
Confidence 224455555544 4788998642 23345678888888542 224579999999997
Q ss_pred Cc---HHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 711 GA---EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 711 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
-. +.+.+........-...+ .+.+. -.|.+||...+.|.|++.++..+|++.++.
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d----~~eEk--lSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSD----TIEEK--LSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hhccchhhhhccCCCccccCcch----HHHHH--HhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 31 111110000000000011 11111 257799999999999999999999999997
No 347
>PRK09087 hypothetical protein; Validated
Probab=99.12 E-value=6.2e-10 Score=115.27 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=103.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
.++|+||+|+|||+|++++++.. ....++...+... +...+ ...+|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~~~~~---------------------~~~~~---~~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-----DALLIHPNEIGSD---------------------AANAA---AEGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHHcchH---------------------HHHhh---hcCeEEEECC
Confidence 49999999999999999988764 2234444322111 11111 1258999999
Q ss_pred cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc
Q 046258 670 EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD 749 (900)
Q Consensus 670 dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~ 749 (900)
+.+.. .+..|+.++..- .-....+|+|++..+..+ ..+.|+|.+||.
T Consensus 97 ~~~~~-~~~~lf~l~n~~----------~~~g~~ilits~~~p~~~----------------------~~~~~dL~SRl~ 143 (226)
T PRK09087 97 DAGGF-DETGLFHLINSV----------RQAGTSLLMTSRLWPSSW----------------------NVKLPDLKSRLK 143 (226)
T ss_pred CCCCC-CHHHHHHHHHHH----------HhCCCeEEEECCCChHHh----------------------ccccccHHHHHh
Confidence 97742 245566655421 002345777887765433 234689999995
Q ss_pred --ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 750 --EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 750 --~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.++.+.|++.+++..|+++.+.. . .+.++++++++|++. .++. .|.+..++.+.
T Consensus 144 ~gl~~~l~~pd~e~~~~iL~~~~~~-------~--~~~l~~ev~~~La~~-~~r~--~~~l~~~l~~L 199 (226)
T PRK09087 144 AATVVEIGEPDDALLSQVIFKLFAD-------R--QLYVDPHVVYYLVSR-MERS--LFAAQTIVDRL 199 (226)
T ss_pred CCceeecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHH-hhhh--HHHHHHHHHHH
Confidence 68999999999999999988873 3 468999999999976 4444 67777666443
No 348
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.12 E-value=2e-10 Score=122.68 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHH----
Q 046258 185 DEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERL---- 260 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l---- 260 (900)
.+..+.++..+. ...+++|.|+||||||++|+.+|..+ +.+++.++|...+......|...-.+
T Consensus 51 ~~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~ 118 (327)
T TIGR01650 51 KATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGK 118 (327)
T ss_pred HHHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCCc
Confidence 344555655554 35689999999999999999999999 77799999877654333333211000
Q ss_pred ------HHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh----------------cCcEEEEEecCHH
Q 046258 261 ------KAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA----------------RGQLRCIGATTLE 318 (900)
Q Consensus 261 ------~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----------------~g~irvI~att~~ 318 (900)
...+-.+ ...|.+|++||++...++.+. .|..+|+ ...+++|+++|+.
T Consensus 119 ~~~~f~~GpL~~A--~~~g~illlDEin~a~p~~~~--------~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 119 QITEFRDGILPWA--LQHNVALCFDEYDAGRPDVMF--------VIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ceeEEecCcchhH--HhCCeEEEechhhccCHHHHH--------HHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 0111111 123778999999887554332 4333333 2358999999876
Q ss_pred H-------HHHHhhccHHHHcccce-eeecCCChHHHHHHHHHH
Q 046258 319 E-------YRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGL 354 (900)
Q Consensus 319 ~-------~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l 354 (900)
. |......+.++..||.. +.+..|+.++..+|+...
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 5 66667789999999986 578999998888888654
No 349
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.6e-10 Score=121.70 Aligned_cols=213 Identities=23% Similarity=0.302 Sum_probs=138.3
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCc-eeEecccccccccccc-cc
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENL-LVRIDMSEYMEQHSVS-RL 636 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~-~i~i~~~~~~~~~~~~-~l 636 (900)
+.+.+.-++++...+.....| ..|. +++++||||||||.+++.+.+.+... ... ++.|||-.+.+...+- .+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----ERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----CCCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 556667777788877776544 3443 69999999999999999999999763 222 7999999987765431 22
Q ss_pred ---cCCCCCCcccccc---cchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 637 ---IGAPPGYVGHEEG---GQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 637 ---~G~~~g~~g~~~~---~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
+|..| ..|.... ..+.+.+.. ...-|++|||+|.+-..-.+.|++++....- ...++.+|+.+|
T Consensus 94 ~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i~n 164 (366)
T COG1474 94 LNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAVSN 164 (366)
T ss_pred HHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEEec
Confidence 22211 2222221 223344444 3557899999999876655677777764221 135678888888
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTD 788 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 788 (900)
.-. +...+.|-+.+++. ..|.|+||+.+++..|+........ . .-.+++
T Consensus 165 ~~~-----------------------~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~---~----~~~~~~ 214 (366)
T COG1474 165 DDK-----------------------FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGF---S----AGVIDD 214 (366)
T ss_pred cHH-----------------------HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhc---c----CCCcCc
Confidence 621 13456677777664 3589999999999999998887321 1 246888
Q ss_pred HHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 789 AALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 789 ~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
++++.++.........||--..+++.+.
T Consensus 215 ~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 215 DVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred cHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 9998887553222223665555554433
No 350
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.12 E-value=2.3e-10 Score=124.33 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=94.6
Q ss_pred CCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC-------CC---------------
Q 046258 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL-------AD--------------- 235 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l-------~~--------------- 235 (900)
|..++|++..++.+.-.+-.....|+||.|+||||||++|++++..+..-...+.+ .+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIER 86 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCccccc
Confidence 55689999999887754432334789999999999999999999988431110000 00
Q ss_pred -cEEEEEech----hhhhcccccchHHHHHH-----HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh
Q 046258 236 -VRLIALDMG----ALVAGAKYRGEFEERLK-----AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA 305 (900)
Q Consensus 236 -~~~~~~~~~----~l~~g~~~~g~~~~~l~-----~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~ 305 (900)
.+|+.+..+ .++ |+. .++..+. -..+.+..+++|+ ||+||++.+.+..++ .|...|+
T Consensus 87 ~~p~~~~p~~~t~~~l~-G~~---d~~~~l~~g~~~~~~G~l~~A~~Gi-L~lDEInrl~~~~q~--------~Lle~me 153 (334)
T PRK13407 87 PTPVVDLPLGVTEDRVV-GAL---DIERALTRGEKAFEPGLLARANRGY-LYIDEVNLLEDHIVD--------LLLDVAQ 153 (334)
T ss_pred CCccccCCCCCCcceee-cch---hhhhhhhcCCeeecCCceEEcCCCe-EEecChHhCCHHHHH--------HHHHHHH
Confidence 111111100 011 110 0111110 0011222344455 999999998765554 7888887
Q ss_pred cCc---------------EEEEEecCHHHHHHHhhccHHHHcccce-eeecCCCh-HHHHHHHHH
Q 046258 306 RGQ---------------LRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSV-PDTVSILRG 353 (900)
Q Consensus 306 ~g~---------------irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~-~e~~~ilr~ 353 (900)
.+. +.+|+++|+.+. ...+++..||.. +.+..|.. +++.++++.
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 553 456666665431 367899999985 77766655 788888865
No 351
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.11 E-value=4.9e-10 Score=121.80 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=101.0
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEE-----------------
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLI----------------- 239 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~----------------- 239 (900)
.|..++|+++..+.++..+..+...++||.|++|||||++|+.+++.+....+. ++++|.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~---~~~pf~~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVV---KDDPFNSHPSDPELMSDEVREAI 91 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCcc---CCCCCCCCCCChhhhchhhhhhh
Confidence 466799999999999888887777899999999999999999999988654321 122221
Q ss_pred -----------EEechhhhhcc---cccch--HHHHHHH-----HHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHH
Q 046258 240 -----------ALDMGALVAGA---KYRGE--FEERLKA-----VLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAAN 298 (900)
Q Consensus 240 -----------~~~~~~l~~g~---~~~g~--~~~~l~~-----~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~ 298 (900)
.+.+..+-.|. ...|. .+..+.. ..+.+..+++|+ ||+||++.+.+..|+
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~Gi-L~lDEInrL~~~~Q~-------- 162 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI-LYVDEVNLLDDHLVD-------- 162 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCE-EEecChHhCCHHHHH--------
Confidence 00000000000 00110 1111110 011223445455 999999999876665
Q ss_pred hHhhhhhcC---------------cEEEEEecCHHHHHHHhhccHHHHcccce-eeecCCC-hHHHHHHHHH
Q 046258 299 LFKPMLARG---------------QLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPS-VPDTVSILRG 353 (900)
Q Consensus 299 ~L~~~l~~g---------------~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~-~~e~~~ilr~ 353 (900)
.|+.+|+.| ++.+|++.++.+ ....+.|..||.. +.+..|+ .+++.+|++.
T Consensus 163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHHHHHHh
Confidence 777777653 244555555543 1367889999986 7777776 4778888865
No 352
>PHA02244 ATPase-like protein
Probab=99.11 E-value=2.2e-10 Score=123.36 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh--h-hhcc-ccc
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA--L-VAGA-KYR 253 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~--l-~~g~-~~~ 253 (900)
+.+|.++.++.....+.+ ....|++|+||||||||++|+++|+.+ +.+|+.++... + +.|. ...
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~ 166 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDAN 166 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccc
Confidence 468888877666555544 456799999999999999999999987 56688887421 0 1111 011
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-------------cCcEEEEEecCHHH-
Q 046258 254 GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-------------RGQLRCIGATTLEE- 319 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------------~g~irvI~att~~~- 319 (900)
|.+. -..++..+ ..|.+|||||++.+.++.+. .|.++++ ...+++|+++|+..
T Consensus 167 g~~~--dgpLl~A~---~~GgvLiLDEId~a~p~vq~--------~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~ 233 (383)
T PHA02244 167 GKFH--ETPFYEAF---KKGGLFFIDEIDASIPEALI--------IINSAIANKFFDFADERVTAHEDFRVISAGNTLGK 233 (383)
T ss_pred cccc--chHHHHHh---hcCCEEEEeCcCcCCHHHHH--------HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCcc
Confidence 2221 00122222 23567999999877654332 5555553 35689999998632
Q ss_pred -----HHHHhhccHHHHcccceeeecCCCh
Q 046258 320 -----YRKYVEKDAAFERRFQQVYVAEPSV 344 (900)
Q Consensus 320 -----~~~~~~~d~al~~Rf~~i~i~~P~~ 344 (900)
|......++++.+||..|.+..|+.
T Consensus 234 G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 234 GADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred CcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 1111357899999999899888863
No 353
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=4e-10 Score=121.63 Aligned_cols=159 Identities=16% Similarity=0.212 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-ceeEeccccccccccccc--ccCCC
Q 046258 564 AEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-LLVRIDMSEYMEQHSVSR--LIGAP 640 (900)
Q Consensus 564 ~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-~~i~i~~~~~~~~~~~~~--l~G~~ 640 (900)
..+.+.+..++... +-| ..+||+||+|+||+++|..+|+.+.+... +.-...|-.........+ ++...
T Consensus 10 ~~~~~~l~~~~~~~-------rl~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAG-------RLG-HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred HHHHHHHHHHHHcC-------Ccc-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC
Confidence 34555666665433 223 35999999999999999999999987431 111111111111111111 11111
Q ss_pred CCCcc--------cccccchhHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEcc
Q 046258 641 PGYVG--------HEEGGQLTEAVRRR----PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 708 (900)
Q Consensus 641 ~g~~g--------~~~~~~l~~~~~~~----~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~ts 708 (900)
|...| .+..+.+.+.+... .+.|++||++|++.....|+||+.||+ ...+++||++|
T Consensus 82 p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~~ 150 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGRYLWLIS 150 (319)
T ss_pred CCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCCeEEEEE
Confidence 22212 11112222333322 457999999999999999999999998 44688888888
Q ss_pred CCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 709 NLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 709 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
+. ...+.|.+++|| ..+.|.+++.+++...+..
T Consensus 151 ~~--------------------------~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 151 AQ--------------------------PARLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CC--------------------------hhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 76 356889999999 9999999999888777653
No 354
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=2.7e-10 Score=124.21 Aligned_cols=142 Identities=21% Similarity=0.232 Sum_probs=96.1
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc------c-c-ccccccCCC-CCCcccccccchhHHHHh-
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME------Q-H-SVSRLIGAP-PGYVGHEEGGQLTEAVRR- 658 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~------~-~-~~~~l~G~~-~g~~g~~~~~~l~~~~~~- 658 (900)
..+||+||+|+|||++|+.+|+.+.+.... -.-.|+.... . | ++..+.-.. ...++.+..+.+.+.+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 369999999999999999999999873211 0012222110 0 0 000010000 011222223334444433
Q ss_pred ---CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 659 ---RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 659 ---~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
.++.|++||++|++....+|.||+.||+ ...+++||++|+..
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~------------------------ 146 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQP------------------------ 146 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECCh------------------------
Confidence 3467999999999999999999999997 34678898888863
Q ss_pred HHhcccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 736 VRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 736 ~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
..+.|.+++|| ..+.|.|++.+++...+...
T Consensus 147 --~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 147 --SRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred --hhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 55889999999 88999999999988777654
No 355
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-10 Score=125.12 Aligned_cols=180 Identities=21% Similarity=0.345 Sum_probs=126.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccccc--chh-HHHH----hC---
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGG--QLT-EAVR----RR--- 659 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~--~l~-~~~~----~~--- 659 (900)
.+||+||||||||.+||.|.+.|+..+.+ .+|..++.+ .|||.++.. .|+ ++-. ..
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePK--IVNGPeIL~------------KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPK--IVNGPEILN------------KYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCc--ccCcHHHHH------------HhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 59999999999999999999999875443 345555433 277777642 222 2211 11
Q ss_pred CCeEEEEcccccc-------------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchH
Q 046258 660 PYSVVLFDEVEKA-------------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQ 726 (900)
Q Consensus 660 ~~~vlllDEidk~-------------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~ 726 (900)
.-.+++|||||.. |..|.|.||.-||.-. .+.|+++|.-||.
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------qLNNILVIGMTNR---------------- 378 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------QLNNILVIGMTNR---------------- 378 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------hhhcEEEEeccCc----------------
Confidence 2258999999863 6679999999998411 4578999999997
Q ss_pred HHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCC
Q 046258 727 VARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIY 803 (900)
Q Consensus 727 ~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~ 803 (900)
+..++.+|+ +||...+...-+++.-..+|++.+-++.. +++. +++++ ++.|+. .+.||
T Consensus 379 ----------~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMr----e~~~---l~~dVdl~elA~--lTKNf 439 (744)
T KOG0741|consen 379 ----------KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMR----ENNK---LSADVDLKELAA--LTKNF 439 (744)
T ss_pred ----------hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhh----hcCC---CCCCcCHHHHHH--HhcCC
Confidence 566778888 59977888888999888888887776443 3331 22222 344443 35677
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcc
Q 046258 804 GARPIRRWLEKKVVTELSRMLVRE 827 (900)
Q Consensus 804 g~R~L~~~i~~~i~~~l~~~i~~~ 827 (900)
...+|+.+++.+...++-+.+..+
T Consensus 440 SGAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 440 SGAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred chhHHHHHHHHHHHHHHHhhhccC
Confidence 788999999888888877766544
No 356
>PRK09087 hypothetical protein; Validated
Probab=99.09 E-value=3.5e-09 Score=109.65 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=108.0
Q ss_pred CCCCCCC-c-hHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccc
Q 046258 177 KLDPVIG-R-DEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRG 254 (900)
Q Consensus 177 ~~~~~iG-~-~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g 254 (900)
++++++. . +...-..++.+.....+.++|+||+|+|||+++++++... +.. +++...+..
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~~------ 80 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIGS------ 80 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcch------
Confidence 4556653 3 3333333332222233348999999999999999988754 333 333322111
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHccc
Q 046258 255 EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRF 334 (900)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf 334 (900)
..+..+. .+ +|+|||++.+.. ....+.+.+..+.+.|...+|++++.+..... ..+.|++||
T Consensus 81 -------~~~~~~~---~~-~l~iDDi~~~~~-----~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl 142 (226)
T PRK09087 81 -------DAANAAA---EG-PVLIEDIDAGGF-----DETGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRL 142 (226)
T ss_pred -------HHHHhhh---cC-eEEEECCCCCCC-----CHHHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHH
Confidence 1111111 13 589999987631 13446677777778888877777765554222 368899999
Q ss_pred ---ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhc
Q 046258 335 ---QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYI 382 (900)
Q Consensus 335 ---~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~ 382 (900)
..+.+..|+.+++.++++...+. .++.++++++.+++....|-+
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH
Confidence 46888999999999999877766 478899999999999885443
No 357
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.3e-09 Score=117.80 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc------cc-c-ccccc
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM------EQ-H-SVSRL 636 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~------~~-~-~~~~l 636 (900)
...+.+.+++... +-| ..+||+||+|+||+++|+.+|+.+.+.... ..-.|+... .. | ++..+
T Consensus 9 ~~~~~l~~~~~~~-------rl~-HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 9 PTYQQITQAFQQG-------LGH-HALLFKADSGLGTEQLIRALAQWLMCQTPQ-GDQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHHHcC-------Ccc-eeEEeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCEEEE
Confidence 3445566665443 222 368999999999999999999999874311 001232211 00 0 00111
Q ss_pred cCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCc
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGA 712 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~ 712 (900)
.......+|.+..+.+.+.+.. .++.|++||++|++....+|+||+.||+ ...+++||++|+.
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~~-- 146 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQADL-- 146 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC--
Confidence 1000011233333334444332 3458999999999999999999999998 5578899998876
Q ss_pred HHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 713 EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...+.|.+++|| ..+.|.|++.+++.+.+...
T Consensus 147 ------------------------~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 147 ------------------------SAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ------------------------hHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 356889999999 99999999999988777653
No 358
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.08 E-value=2.3e-10 Score=132.33 Aligned_cols=192 Identities=18% Similarity=0.289 Sum_probs=127.9
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------hc
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV--------AG 249 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~--------~g 249 (900)
.++|.+..++.++..+.. ....+++++|++||||+++|++++....+.+.| |+.+||+.+. +|
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~-------~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKP-------LVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCC-------eeeeeCCCCCHHHHHHHhcC
Confidence 478888888888776654 456789999999999999999999988666555 9999998752 22
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEecC
Q 046258 250 AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGATT 316 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~att 316 (900)
.. .|.+.+......+.+..+++|+ ||||||+.|.+..|. .|..+++.+ .+|+|++|+
T Consensus 213 ~~-~~~~~~~~~~~~g~~~~a~~gt-l~ldei~~l~~~~q~--------~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 213 HE-KGAFTGADKRREGRFVEADGGT-LFLDEIGDISPMMQV--------RLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred CC-CCCcCCCCcCCCCceeECCCCE-EEEeccccCCHHHHH--------HHHHHHccCcEEeCCCCceeeeceEEEEeCC
Confidence 21 2222221111222344556566 999999999876655 777777654 367999997
Q ss_pred HHHHHHHh--hccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHhhhhccCCCC
Q 046258 317 LEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 317 ~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
.+...... ...+.|..|+..+.+..|+..+|.+ +.+.+..++...++ ..++++++..+..+. +
T Consensus 283 ~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--------w 354 (441)
T PRK10365 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD--------W 354 (441)
T ss_pred CCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC--------C
Confidence 65532221 1234455577788888898887766 34455555443333 348898888887765 5
Q ss_pred hhhHHHHHH
Q 046258 388 PDKAIDLVD 396 (900)
Q Consensus 388 p~~a~~Lld 396 (900)
|.+...|-.
T Consensus 355 pgN~reL~~ 363 (441)
T PRK10365 355 PGNIRELEN 363 (441)
T ss_pred CCHHHHHHH
Confidence 656655544
No 359
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.2e-09 Score=116.85 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=122.4
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCC----CCCCCCC----c-----------
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGD----VPSNLAD----V----------- 236 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~----~p~~l~~----~----------- 236 (900)
.++.++|++.....+...+.+....| +||+||+|+|||++|+.+|+.+.... .|..+.+ +
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCC
Confidence 45679999999999999998766555 88899999999999999999986532 1211110 0
Q ss_pred -EEEEEechhhhhcccc-cchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cE
Q 046258 237 -RLIALDMGALVAGAKY-RGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QL 309 (900)
Q Consensus 237 -~~~~~~~~~l~~g~~~-~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~i 309 (900)
.++.+....-..+.+. ..-..+.++.+...+.. .++..|++|||+|.|.. .+.|.|+..+++. ..
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------NAANAILKTLEEPPARA 172 (351)
T ss_pred CCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------HHHHHHHHHHhcCCCCc
Confidence 0111110000000000 00012334444444332 24456899999999854 3456788888753 33
Q ss_pred EEEEec-CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCCh
Q 046258 310 RCIGAT-TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 310 rvI~at-t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p 388 (900)
.+|..+ +... ..|.+++|+..+.+..|+.++...++..... ..+ ++++++..+..++ ...|
T Consensus 173 ~fiLit~~~~~------llptIrSRc~~i~l~pl~~~~~~~~L~~~~~----~~~--~~~~~~~~i~~~s------~G~p 234 (351)
T PRK09112 173 LFILISHSSGR------LLPTIRSRCQPISLKPLDDDELKKALSHLGS----SQG--SDGEITEALLQRS------KGSV 234 (351)
T ss_pred eEEEEECChhh------ccHHHHhhccEEEecCCCHHHHHHHHHHhhc----ccC--CCHHHHHHHHHHc------CCCH
Confidence 444444 4332 4689999999899999999988888865221 111 6677777777777 3456
Q ss_pred hhHHHHHHHH
Q 046258 389 DKAIDLVDEA 398 (900)
Q Consensus 389 ~~a~~Lld~a 398 (900)
..+..++...
T Consensus 235 r~Al~ll~~~ 244 (351)
T PRK09112 235 RKALLLLNYG 244 (351)
T ss_pred HHHHHHHhcC
Confidence 6777776543
No 360
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=99.07 E-value=2.5e-09 Score=121.84 Aligned_cols=136 Identities=21% Similarity=0.310 Sum_probs=80.7
Q ss_pred CChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHH
Q 046258 532 VGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQ 611 (900)
Q Consensus 532 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~ 611 (900)
++.++-.+++-+..|+.+..+....+ ++ .+.+.+-.. .+.-+++=.||-|||||++=+-++..
T Consensus 177 FT~dEWid~LlrSiG~eP~~~~~r~K--~~-------~L~RliPlV--------E~N~Nl~ELgPrgTGKS~~y~eiSp~ 239 (675)
T TIGR02653 177 FTSDEWIDVLLRSVGMEPTNLERRTK--WH-------LLTRLIPLV--------ENNYNLCELGPRGTGKSHVYKECSPN 239 (675)
T ss_pred CCHHHHHHHHHHhcCCCccccCHHHH--HH-------HHHhhhhhc--------ccccceEEECCCCCCcceeeeccCCc
Confidence 45555566666677777666654321 11 112221111 22237999999999999987765422
Q ss_pred hcCCCCceeEecccccccccccccccCC----CCCCcccccccchhHHHHhCCCeEEEEcccccc---CHHHHHHHHHHh
Q 046258 612 LFDDENLLVRIDMSEYMEQHSVSRLIGA----PPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA---HISVFNTLLQVL 684 (900)
Q Consensus 612 l~~~~~~~i~i~~~~~~~~~~~~~l~G~----~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~---~~~~~~~Ll~~l 684 (900)
.+.++.+.. +.+.||-. .+|.+| .+.++.||||... +++..+.|-..|
T Consensus 240 -------~~liSGG~~----T~A~LFyn~~~~~~GlVg--------------~~D~VaFDEva~i~f~d~d~v~imK~YM 294 (675)
T TIGR02653 240 -------SILMSGGQT----TVANLFYNMSTRQIGLVG--------------MWDVVAFDEVAGIEFKDKDGVQIMKDYM 294 (675)
T ss_pred -------eEEEECCcc----chhHeeEEcCCCceeEEe--------------eccEEEEeeccccccCCHHHHHHHHHHh
Confidence 223333322 22333322 123333 2468999999754 677888999999
Q ss_pred hCCeeecCCCceeecCCeEEEEccCCC
Q 046258 685 DDGRLTDGQGRTVDFRNTVIIMTSNLG 711 (900)
Q Consensus 685 d~g~~~d~~g~~~~~~~~~iI~tsn~~ 711 (900)
++|.|+.+.... ..++-++|-.|.+
T Consensus 295 ~sG~FsRG~~~~--~a~as~vfvGNi~ 319 (675)
T TIGR02653 295 ASGSFARGKESI--EGKASIVFVGNIN 319 (675)
T ss_pred hcCccccccccc--ccceeEEEEcccC
Confidence 999998766322 2566677877775
No 361
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.07 E-value=1.9e-09 Score=109.44 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=81.6
Q ss_pred eEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
+|||+||++.++-+.+..|...+++ ++. .++|++||.+...+..- +..+ -..+|
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~-----------d~~-PiiimaTNrgit~iRGT--n~~S------------phGiP 343 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEN-----------DMA-PIIIMATNRGITRIRGT--NYRS------------PHGIP 343 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhh-----------ccC-cEEEEEcCCceEEeecC--CCCC------------CCCCc
Confidence 3899999999999999999999997 444 56788889875443210 0001 24689
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCC
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESY 799 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 799 (900)
-+|++|+ .+|...||+++|+.+|++..+. +. .+.++++|++.|...+.
T Consensus 344 ~D~lDR~-lII~t~py~~~d~~~IL~iRc~-------EE--dv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 344 IDLLDRM-LIISTQPYTEEDIKKILRIRCQ-------EE--DVEMNPDALDLLTKIGE 391 (454)
T ss_pred HHHhhhh-heeecccCcHHHHHHHHHhhhh-------hh--ccccCHHHHHHHHHhhh
Confidence 9999999 9999999999999999998877 33 47899999999998765
No 362
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.07 E-value=6.9e-10 Score=120.86 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=96.6
Q ss_pred CCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCC----CCCCC--CCcEEEE-----------
Q 046258 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGD----VPSNL--ADVRLIA----------- 240 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~----~p~~l--~~~~~~~----------- 240 (900)
|..++|++..++.++-.+-.+...+++|.|+||+||||++++|+..+.... .|... .+-.++.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 567999999998887666666677899999999999999999998873211 11000 0000000
Q ss_pred -----------Eechhhhhcccccch--HHHHHH-----HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhh
Q 046258 241 -----------LDMGALVAGAKYRGE--FEERLK-----AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKP 302 (900)
Q Consensus 241 -----------~~~~~l~~g~~~~g~--~~~~l~-----~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~ 302 (900)
.++..-.......|. ++..++ -..+.+..+++|+ |||||++.+.+..|. .|+.
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~Gv-L~lDEi~~L~~~~Q~--------~Ll~ 153 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGI-LYIDEVNLLEDHLVD--------VLLD 153 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCE-EEecChHhCCHHHHH--------HHHH
Confidence 111110000011111 111110 0111233345455 999999998766554 7778
Q ss_pred hhhcCc---------------EEEEEecCHHHHHHHhhccHHHHcccce-eeecCCCh-HHHHHHHHH
Q 046258 303 MLARGQ---------------LRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSV-PDTVSILRG 353 (900)
Q Consensus 303 ~l~~g~---------------irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~-~e~~~ilr~ 353 (900)
+|+.|. +.+|++++..+ ....+.|..||.. +.+..|.. +++.+|++.
T Consensus 154 ~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 154 VAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 876553 44555555443 1367899999986 66777754 777888865
No 363
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.3e-10 Score=120.53 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=122.0
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeE
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSV 663 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~v 663 (900)
.|...+|+.||||+|||.|+++||..+. ..|..+..+.++. .|+|..+. ..++...+...++|
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~---atff~iSassLts------------K~~Ge~eK~vralf~vAr~~qPsv 248 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESG---ATFFNISASSLTS------------KYVGESEKLVRALFKVARSLQPSV 248 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhc---ceEeeccHHHhhh------------hccChHHHHHHHHHHHHHhcCCeE
Confidence 3444699999999999999999999883 3666666655433 25665532 34566666777899
Q ss_pred EEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHH
Q 046258 664 VLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQV 732 (900)
Q Consensus 664 lllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 732 (900)
+|+||||++ ++.....+|-.++... + ..-.++++|.|||.+.
T Consensus 249 ifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-s------~~~drvlvigaTN~P~-------------------- 301 (428)
T KOG0740|consen 249 IFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-S------APDDRVLVIGATNRPW-------------------- 301 (428)
T ss_pred EEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-C------CCCCeEEEEecCCCch--------------------
Confidence 999999875 2223333333333211 1 0113789999999973
Q ss_pred HHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 733 LQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 733 ~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
.++.+++.||..++.++.++.+....+++..|.+ + .-.+++..+..|++. +..|+.-++..++
T Consensus 302 ------e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~-------~--~~~l~~~d~~~l~~~--Tegysgsdi~~l~ 364 (428)
T KOG0740|consen 302 ------ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE-------Q--PNGLSDLDISLLAKV--TEGYSGSDITALC 364 (428)
T ss_pred ------HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh-------C--CCCccHHHHHHHHHH--hcCcccccHHHHH
Confidence 2567788899777888889999999999998883 2 235677778888764 2235556788888
Q ss_pred HHHHHHHHHHH
Q 046258 813 EKKVVTELSRM 823 (900)
Q Consensus 813 ~~~i~~~l~~~ 823 (900)
..+...++...
T Consensus 365 kea~~~p~r~~ 375 (428)
T KOG0740|consen 365 KEAAMGPLREL 375 (428)
T ss_pred HHhhcCchhhc
Confidence 77777666543
No 364
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.1e-09 Score=105.93 Aligned_cols=170 Identities=26% Similarity=0.347 Sum_probs=109.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchH-HHHHHHHHHH----HHHcCCC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEF-EERLKAVLKE----VEEAEGK 273 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~-~~~l~~~~~~----~~~~~~~ 273 (900)
.++|+||+||+|+|||.+|+.||+.+ +++|..-|+..|... .|.|+- |.-+-.++.. ++.+..|
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEA-GYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEA-GYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhc-cccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 57899999999999999999999999 666999999888753 467753 4334444443 2334444
Q ss_pred eEEEEcchhhhhhCCCC-CCh-----hhHHHhHhhhhhc-----------------------CcEEEEEecCHHHHHH--
Q 046258 274 VILFIDEIHLVLGAGRT-EGS-----MDAANLFKPMLAR-----------------------GQLRCIGATTLEEYRK-- 322 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~-~~~-----~~~~~~L~~~l~~-----------------------g~irvI~att~~~~~~-- 322 (900)
|+||||||.+...... +.. ..+...|+..++. .++-+|+.+....+.+
T Consensus 165 -IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI 243 (408)
T COG1219 165 -IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKII 243 (408)
T ss_pred -eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHH
Confidence 5999999999865432 111 2244566666641 1233443321111000
Q ss_pred --------------------------H-----------hhccHHHHccccee-eecCCChHHHHHHH----HHHHHHHhc
Q 046258 323 --------------------------Y-----------VEKDAAFERRFQQV-YVAEPSVPDTVSIL----RGLKEKYEG 360 (900)
Q Consensus 323 --------------------------~-----------~~~d~al~~Rf~~i-~i~~P~~~e~~~il----r~l~~~~~~ 360 (900)
+ +-+-|.|..|+.++ .+...+.+....|| +.+.++|..
T Consensus 244 ~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~ 323 (408)
T COG1219 244 KKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK 323 (408)
T ss_pred HHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH
Confidence 0 12347788888874 45677888888887 356667664
Q ss_pred cc---Cc--ccChhHHHHHHHHhhh
Q 046258 361 HH---GV--RIQDRALVVAAQLSAR 380 (900)
Q Consensus 361 ~~---~v--~i~~eal~~l~~~s~~ 380 (900)
.. ++ .++++++..+++.+-.
T Consensus 324 Lf~~d~V~L~F~~~AL~~IA~~A~~ 348 (408)
T COG1219 324 LFEMDGVELEFTEEALKAIAKKAIE 348 (408)
T ss_pred HhcccCceEEEcHHHHHHHHHHHHH
Confidence 33 33 4889999998887643
No 365
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.1e-09 Score=121.19 Aligned_cols=143 Identities=31% Similarity=0.444 Sum_probs=95.4
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---------------------c
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---------------------L 618 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---------------------~ 618 (900)
+++...++..+...+..+. +-| ..+||+||||+|||++|.++|+.+++... .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~------~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG------RLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred cccchhHHHHHHHHHHhcC------CCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 3455555666666665441 223 13999999999999999999999987432 2
Q ss_pred eeEecccccccccccccccCCCCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC
Q 046258 619 LVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 619 ~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
++.++-++..... +..+.-+.+...... .+..|++|||+|+++.+.+++|+..++.
T Consensus 76 ~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe-------- 135 (325)
T COG0470 76 FLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE-------- 135 (325)
T ss_pred eEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc--------
Confidence 2233322211100 011111111111111 3568999999999999999999999997
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH 759 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~ 759 (900)
...+++||++||. ...+.|.+.+|| ..+.|.|.+.
T Consensus 136 ---p~~~~~~il~~n~--------------------------~~~il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 136 ---PPKNTRFILITND--------------------------PSKILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ---CCCCeEEEEEcCC--------------------------hhhccchhhhcc-eeeecCCchH
Confidence 4478999999995 355778999999 9999998554
No 366
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.9e-10 Score=115.43 Aligned_cols=131 Identities=24% Similarity=0.400 Sum_probs=91.1
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH---hCCCe
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR---RRPYS 662 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~---~~~~~ 662 (900)
+|.-.++||||||+|||.+|+++|..+.- .|+.+..+++.+. |.|.. .+.+.+..+ ....|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~---nfl~v~ss~lv~k------------yiGEs-aRlIRemf~yA~~~~pc 227 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGV---NFLKVVSSALVDK------------YIGES-ARLIRDMFRYAREVIPC 227 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCC---ceEEeeHhhhhhh------------hcccH-HHHHHHHHHHHhhhCce
Confidence 34447999999999999999999999944 7888888776432 44433 233444333 33459
Q ss_pred EEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHH
Q 046258 663 VVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ 731 (900)
Q Consensus 663 vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~ 731 (900)
++|+||||.. +..+|..|..+++.-.=.| ...++-+|+|+|.+
T Consensus 228 iifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~l~rVk~ImatNrp-------------------- 281 (388)
T KOG0651|consen 228 IIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------TLHRVKTIMATNRP-------------------- 281 (388)
T ss_pred EEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------hcccccEEEecCCc--------------------
Confidence 9999999863 4568888888887311111 23567899999985
Q ss_pred HHHHHHhcccHHHH--hcccceeecCCCCHHHHHH
Q 046258 732 VLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRK 764 (900)
Q Consensus 732 ~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~ 764 (900)
..+.|+|+ +|+|..+..+-+.+.....
T Consensus 282 ------dtLdpaLlRpGRldrk~~iPlpne~~r~~ 310 (388)
T KOG0651|consen 282 ------DTLDPALLRPGRLDRKVEIPLPNEQARLG 310 (388)
T ss_pred ------cccchhhcCCccccceeccCCcchhhcee
Confidence 56788888 5998888877555544333
No 367
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.4e-09 Score=117.36 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCC--
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPG-- 642 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g-- 642 (900)
...+.+.+++... +....+||+||.|+||+.+|+.+|+.+.+.+.. .-.|+....-... .-|..|.
T Consensus 10 ~~~~~l~~~~~~~--------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~--~~~Cg~C~sC~~~--~~g~HPD~~ 77 (319)
T PRK06090 10 PVWQNWKAGLDAG--------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQ--SEACGFCHSCELM--QSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHHcC--------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC--CCCCCCCHHHHHH--HcCCCCCEE
Confidence 3444555555433 223469999999999999999999999874421 1123322110000 0111111
Q ss_pred ---------CcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 643 ---------YVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 643 ---------~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
.++.+..+.+.+.+.. .++.|++||++|++.....|+||+.||+ ...+++||++|+
T Consensus 78 ~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 146 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLLVTH 146 (319)
T ss_pred EEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 1222222333333332 3468999999999999999999999998 557899999887
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
. ...+.|.+++|| ..+.|.|++.+++.+.+..
T Consensus 147 ~--------------------------~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 147 N--------------------------QKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred C--------------------------hhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 6 356889999999 8999999999988777654
No 368
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.4e-09 Score=129.53 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=128.4
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEE
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVV 664 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vl 664 (900)
|...+||+||||||||.+|+++|..+-..+.+ +.+.|..- +... .-|+|..+. ..+++..++...+++
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkg------aD~l---skwvgEaERqlrllFeeA~k~qPSII 367 (1080)
T KOG0732|consen 298 PPRGVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKG------ADCL---SKWVGEAERQLRLLFEEAQKTQPSII 367 (1080)
T ss_pred CCcceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcC------chhh---ccccCcHHHHHHHHHHHHhccCceEE
Confidence 33479999999999999999999988664433 22222211 1111 136666654 345666667777999
Q ss_pred EEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 665 LFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 665 llDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
||||||-+ |..+...||.+|+.-. ....+++|.+||.+
T Consensus 368 ffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld---------sRgqVvvigATnRp---------------------- 416 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD---------SRGQVVVIGATNRP---------------------- 416 (1080)
T ss_pred eccccccccccccchHHHhhhhHHHHHHHhccCCC---------CCCceEEEcccCCc----------------------
Confidence 99999954 4457889999998411 23678999999984
Q ss_pred HHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHH
Q 046258 734 QEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRW 811 (900)
Q Consensus 734 ~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~ 811 (900)
..+.|+|+ +|||..+.|+-.+-++..+|+..+-..+ .-.++.....+|+.. +..||...|+.+
T Consensus 417 ----da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw---------~~~i~~~l~~~la~~--t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 417 ----DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW---------EPPISRELLLWLAEE--TSGYGGADLKAL 481 (1080)
T ss_pred ----cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC---------CCCCCHHHHHHHHHh--ccccchHHHHHH
Confidence 56789995 7999999999999999988887665521 346778888888864 345667778888
Q ss_pred HHHHHHHHHHH
Q 046258 812 LEKKVVTELSR 822 (900)
Q Consensus 812 i~~~i~~~l~~ 822 (900)
+..+.+.++-+
T Consensus 482 CTeAal~~~~r 492 (1080)
T KOG0732|consen 482 CTEAALIALRR 492 (1080)
T ss_pred HHHHhhhhhcc
Confidence 87766665543
No 369
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.8e-08 Score=109.25 Aligned_cols=161 Identities=22% Similarity=0.395 Sum_probs=109.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHH-HHHHHHHHcCCCeEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLK-AVLKEVEEAEGKVILF 277 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~-~~~~~~~~~~~~~iL~ 277 (900)
..++++|+||+|.|||+|+++++....... | +.+++++....... ++...++ .-...+++.-.--+|+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~----~a~v~y~~se~f~~------~~v~a~~~~~~~~Fk~~y~~dlll 180 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG-P----NARVVYLTSEDFTN------DFVKALRDNEMEKFKEKYSLDLLL 180 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC-C----CceEEeccHHHHHH------HHHHHHHhhhHHHHHHhhccCeee
Confidence 467889999999999999999999875443 3 66788876544321 1111111 1112222221122699
Q ss_pred EcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEec--CHHHHHHHhhccHHHHcccc---eeeecCCChHHHHHHHH
Q 046258 278 IDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGAT--TLEEYRKYVEKDAAFERRFQ---QVYVAEPSVPDTVSILR 352 (900)
Q Consensus 278 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~at--t~~~~~~~~~~d~al~~Rf~---~i~i~~P~~~e~~~ilr 352 (900)
||+++.+.+.... ..+..+.+..+.+.|. .+|.++ .+.++ -...+.|++||. .+.+.+|+.+.+.+||+
T Consensus 181 IDDiq~l~gk~~~--qeefFh~FN~l~~~~k-qIvltsdr~P~~l---~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 181 IDDIQFLAGKERT--QEEFFHTFNALLENGK-QIVLTSDRPPKEL---NGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred echHhHhcCChhH--HHHHHHHHHHHHhcCC-EEEEEcCCCchhh---ccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 9999998654322 5667788888888887 444444 33332 235799999997 36789999999999998
Q ss_pred HHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 353 GLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 353 ~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
...+. .++.++++++..++....+
T Consensus 255 kka~~----~~~~i~~ev~~~la~~~~~ 278 (408)
T COG0593 255 KKAED----RGIEIPDEVLEFLAKRLDR 278 (408)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHhhc
Confidence 75554 6888999999988876533
No 370
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.03 E-value=1.4e-09 Score=104.72 Aligned_cols=140 Identities=26% Similarity=0.383 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHH
Q 046258 182 IGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLK 261 (900)
Q Consensus 182 iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~ 261 (900)
+|++..+..+...+......+++|+||||||||++++.++..+... +.+++.+++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-------CCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 4678889999888887777899999999999999999999988533 445888888776543221111100000
Q ss_pred HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh----cCcEEEEEecCHHHHHHHhhccHHHHcccc
Q 046258 262 AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA----RGQLRCIGATTLEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 262 ~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~g~irvI~att~~~~~~~~~~d~al~~Rf~ 335 (900)
...........+.+|+|||++.+.... .......+..... .+.+.+|++++.... ...++.+.+||.
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~ 144 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLD 144 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhc
Confidence 111111222346789999999873211 1122223333332 367899998876542 235678888885
No 371
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.1e-09 Score=119.31 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=94.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc------c-ccccccccCC----------------------
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM------E-QHSVSRLIGA---------------------- 639 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~------~-~~~~~~l~G~---------------------- 639 (900)
..+||+||+|+||+++|+.+|+.+.+....-..-.|+... . .|.--..+..
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 4799999999999999999999998743100001122110 0 0000000100
Q ss_pred ------CCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 640 ------PPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 640 ------~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
+...++.+..+.+.+.+.. .++.|++||++|++.....|.||+.||+ ...+++||++|+
T Consensus 102 ~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 170 (342)
T PRK06964 102 GKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSA 170 (342)
T ss_pred cccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEEC
Confidence 0011122222223333322 3467999999999999999999999997 457888888887
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
. ...+.|.+++|| ..+.|.|++.+++.+.+..
T Consensus 171 ~--------------------------~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 171 R--------------------------IDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred C--------------------------hhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 6 466899999999 8999999999998887764
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3e-09 Score=116.35 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc-------cc-ccccc
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME-------QH-SVSRL 636 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~-------~~-~~~~l 636 (900)
.+.+.+.+.+... +....+||+||+|+||+++|+++|+.+.+... --.-.|+.... .| ++..+
T Consensus 9 ~~~~~l~~~~~~~--------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~-~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 9 PDYEQLVGSYQAG--------RGHHALLIQALPGMGDDALIYALSRWLMCQQP-QGHKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHHHcC--------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 3444555555433 22346999999999999999999999987321 11112332110 00 11111
Q ss_pred cCCCC-CCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCC
Q 046258 637 IGAPP-GYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 711 (900)
Q Consensus 637 ~G~~~-g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~ 711 (900)
..... ..++.+..+.+.+.+.. ..+.|++||++|+|.....|.||+.||+ ...+++||++|+.
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~~- 147 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLACRE- 147 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC-
Confidence 11100 11333333344444442 3567999999999999999999999998 4578889998876
Q ss_pred cHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 712 AEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
...+.|.+++|| ..+.|+|++.+++...+..
T Consensus 148 -------------------------~~~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 148 -------------------------PARLLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred -------------------------hhhChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 356889999999 7899999999988876643
No 373
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=120.34 Aligned_cols=149 Identities=23% Similarity=0.327 Sum_probs=100.5
Q ss_pred CCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHH
Q 046258 181 VIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERL 260 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l 260 (900)
++|++..+..+...+. .+.|+||.||||||||++|+.+|+.+ +.+|+.+.|...+......|.+.-..
T Consensus 26 ~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 26 VVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred eeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHhh
Confidence 7888888888766555 35699999999999999999999999 67799999986544333334322221
Q ss_pred HHH-HHHHHHcCC----C--eEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--------------CcEEEEEecCHHH
Q 046258 261 KAV-LKEVEEAEG----K--VILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--------------GQLRCIGATTLEE 319 (900)
Q Consensus 261 ~~~-~~~~~~~~~----~--~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------g~irvI~att~~~ 319 (900)
+.. .....-..+ . +|+|+|||+...+. ..+.|+.+|+. ..+.+|+++|+.+
T Consensus 94 ~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~--------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e 165 (329)
T COG0714 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE--------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGE 165 (329)
T ss_pred hhccCCeEEEecCCcccccceEEEEeccccCCHH--------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccc
Confidence 100 000000011 1 38999999766554 44488888764 2356777778777
Q ss_pred HHHHhhccHHHHcccc-eeeecCCChHHHHH
Q 046258 320 YRKYVEKDAAFERRFQ-QVYVAEPSVPDTVS 349 (900)
Q Consensus 320 ~~~~~~~d~al~~Rf~-~i~i~~P~~~e~~~ 349 (900)
+........++.+||. .+.+..|...+...
T Consensus 166 ~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~ 196 (329)
T COG0714 166 YEGTYPLPEALLDRFLLRIYVDYPDSEEEER 196 (329)
T ss_pred cCCCcCCCHHHHhhEEEEEecCCCCchHHHH
Confidence 7666677899999995 57888884443333
No 374
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.98 E-value=6.9e-09 Score=105.00 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=100.1
Q ss_pred HHHHHHccCCC-CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCC---------------CcEEEEEechhhhhccccc
Q 046258 190 RVVRILSRRTK-NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA---------------DVRLIALDMGALVAGAKYR 253 (900)
Q Consensus 190 ~l~~~l~~~~~-~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~---------------~~~~~~~~~~~l~~g~~~~ 253 (900)
.+.+.+.+... ..+||+||+|+|||++|+.+++.+.... +.... ...+..++...- . .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~-~ 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----S-I 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----c-C
Confidence 34455555444 4589999999999999999999985421 10000 001222221110 0 0
Q ss_pred chHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHHhhccH
Q 046258 254 GEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~~~~d~ 328 (900)
..+.++.+.+.+.. .++..|++|||+|.+... +.+.|+..+++. ...+|..++... ...+
T Consensus 77 --~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~--------~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~ 141 (188)
T TIGR00678 77 --KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEA--------AANALLKTLEEPPPNTLFILITPSPE-----KLLP 141 (188)
T ss_pred --CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHH--------HHHHHHHHhcCCCCCeEEEEEECChH-----hChH
Confidence 12345555555543 244568999999998653 345788888753 355665554332 3678
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
++.+|+..+.+..|+..+...+++.. + ++++++..++..+.+
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGG 183 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCC
Confidence 99999998999889888877766543 3 678888888777743
No 375
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.2e-08 Score=112.88 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=116.9
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCC---------CCCCCc----------
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVP---------SNLADV---------- 236 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p---------~~l~~~---------- 236 (900)
.+++++|++..++.+.+.+.+....| .||+||+|+||+++|..+|+.+...... ..+..+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 45679999999999999998866666 8899999999999999999998543210 000000
Q ss_pred -----EEEEEechhhhhcccccch-HHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC
Q 046258 237 -----RLIALDMGALVAGAKYRGE-FEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG 307 (900)
Q Consensus 237 -----~~~~~~~~~l~~g~~~~g~-~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g 307 (900)
.++.+....-..+.+.... ..+.++.+...+.. .+++.|++|||+|.+.. .+.|.|+..+++.
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~--------~aanaLLK~LEep 168 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA--------NAANALLKVLEEP 168 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--------HHHHHHHHHHhcC
Confidence 1122211000000000011 12334444444332 24567899999998843 4567888888763
Q ss_pred --cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCC
Q 046258 308 --QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGR 385 (900)
Q Consensus 308 --~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~ 385 (900)
...+|..|+.... ..+.+++|++.+.+..|+.++...++... ....+++.+..++.++ .
T Consensus 169 p~~~~~IL~t~~~~~-----llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~~s------~ 229 (365)
T PRK07471 169 PARSLFLLVSHAPAR-----LLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAALA------E 229 (365)
T ss_pred CCCeEEEEEECCchh-----chHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHHHc------C
Confidence 4555555543332 46889999999999999888877666432 1223344444555555 2
Q ss_pred CChhhHHHHHH
Q 046258 386 HLPDKAIDLVD 396 (900)
Q Consensus 386 ~~p~~a~~Lld 396 (900)
..|..+..+++
T Consensus 230 Gsp~~Al~ll~ 240 (365)
T PRK07471 230 GSVGRALRLAG 240 (365)
T ss_pred CCHHHHHHHhc
Confidence 33445555543
No 376
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=8.2e-09 Score=121.73 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-----------------------cEEEEEecCHHHHHHHhh
Q 046258 269 EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-----------------------QLRCIGATTLEEYRKYVE 325 (900)
Q Consensus 269 ~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~irvI~att~~~~~~~~~ 325 (900)
.+++|+ |||||++.|.+..|. .|+++|+.+ ++++|+++++..+ ..
T Consensus 215 ~AngGt-L~Ldei~~L~~~~q~--------~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~ 282 (608)
T TIGR00764 215 RAHKGV-LYIDEIKTMPLEVQQ--------YLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EG 282 (608)
T ss_pred ECCCCE-EEEEChHhCCHHHHH--------HHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hh
Confidence 345555 999999888754443 777776532 4788999988754 34
Q ss_pred ccHHHHcccc---e-eee--cCC-ChHHHHHHHHHHHHHHhccc-CcccChhHHHHHHHHhhhhccCCCC----hhhHHH
Q 046258 326 KDAAFERRFQ---Q-VYV--AEP-SVPDTVSILRGLKEKYEGHH-GVRIQDRALVVAAQLSARYITGRHL----PDKAID 393 (900)
Q Consensus 326 ~d~al~~Rf~---~-i~i--~~P-~~~e~~~ilr~l~~~~~~~~-~v~i~~eal~~l~~~s~~~~~~~~~----p~~a~~ 393 (900)
.+|.|.+||. . +.+ ..| +.+.+..+.+.+...+..+. -..++++++..+.+.+.|....+.. .....+
T Consensus 283 l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ 362 (608)
T TIGR00764 283 MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGG 362 (608)
T ss_pred cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 6899999998 3 333 334 34455556666666555442 2358999999999887776555443 455666
Q ss_pred HHHHHHHH
Q 046258 394 LVDEACAN 401 (900)
Q Consensus 394 Lld~a~a~ 401 (900)
++..+...
T Consensus 363 llR~A~~i 370 (608)
T TIGR00764 363 LVRAAGDI 370 (608)
T ss_pred HHHHHHHH
Confidence 66666443
No 377
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.96 E-value=1.8e-09 Score=106.60 Aligned_cols=112 Identities=24% Similarity=0.346 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIV-RGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILF 277 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 277 (900)
+..+++|+||+|||||.+|+.||+.+. ... .+++.+||+.+..+..........+......+.....+ |||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~-------~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g-VVl 73 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSE-------RPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG-VVL 73 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSC-------CEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT-EEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCc-------cchHHHhhhcccccchHHhhhhhhhhcccceeeccchh-hhh
Confidence 456899999999999999999999995 343 35999999998762111111111111111112222223 799
Q ss_pred EcchhhhhhCCCCCCh---hhHHHhHhhhhhcC-------------cEEEEEecCHH
Q 046258 278 IDEIHLVLGAGRTEGS---MDAANLFKPMLARG-------------QLRCIGATTLE 318 (900)
Q Consensus 278 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~~g-------------~irvI~att~~ 318 (900)
||||+...+......+ ..+.+.|+++++.| ++.+|+++|..
T Consensus 74 lDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 74 LDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp EETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9999999875222111 35678888988755 35677777643
No 378
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2e-08 Score=107.40 Aligned_cols=95 Identities=31% Similarity=0.480 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch-HHHHHHHHHHH----HHHcCCC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE-FEERLKAVLKE----VEEAEGK 273 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~ 273 (900)
.+.||||.||+|+|||.+|+.||+.+ +++|.-.||..|.. ..|.|+ .+.-+..++.. ++.+..|
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 57899999999999999999999999 66799999999864 246774 44444444443 3444545
Q ss_pred eEEEEcchhhhhhCCCC------CChhhHHHhHhhhhh
Q 046258 274 VILFIDEIHLVLGAGRT------EGSMDAANLFKPMLA 305 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~ 305 (900)
|+||||+|.+.....+ -+...+...|+.+++
T Consensus 294 -IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 294 -IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred -eEEEehhhhhcccCccccccccccchhHHHHHHHHhc
Confidence 5999999999743322 112234456666664
No 379
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.94 E-value=6.2e-08 Score=101.71 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=129.7
Q ss_pred HHHHHHHHHcc---CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh----------h--hccc
Q 046258 187 EIRRVVRILSR---RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL----------V--AGAK 251 (900)
Q Consensus 187 ~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l----------~--~g~~ 251 (900)
.+.++.+.+.. ....|+||+|++|.|||++++.+.+.-....-+. -..++++.+.+..- + -|..
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 45555555554 3457899999999999999999997653322221 12457888876432 1 0111
Q ss_pred c--cchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 252 Y--RGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 252 ~--~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
+ .......-..+...++..+ .-+|+|||+|.+..... ....++.|.|+.+...-.+-+|+.++.+-+. .+..|+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs~-~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~-al~~D~Q 200 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGSY-RKQREFLNALKFLGNELQIPIVGVGTREAYR-ALRTDPQ 200 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhcccH-HHHHHHHHHHHHHhhccCCCeEEeccHHHHH-HhccCHH
Confidence 1 2222222333444455555 44699999999865322 2356678899888888889999999887765 4578999
Q ss_pred HHcccceeeecCC-ChHHHHHHHHHHHHHHhcccCcccC-hhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHh
Q 046258 330 FERRFQQVYVAEP-SVPDTVSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 330 l~~Rf~~i~i~~P-~~~e~~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
+.+||+.+.++.- ..++...++..+-..+.....-.+. ++....+...+.+.+. +...++..++...
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~~ll~~aA~~A 269 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELSRLLNAAAIAA 269 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHHHHHHHHHHHH
Confidence 9999998777442 3345555665555544332222343 5555777777766554 6777777766543
No 380
>PRK12377 putative replication protein; Provisional
Probab=98.93 E-value=2.1e-09 Score=112.07 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=72.5
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh-CCCeEEEEc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFD 667 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllD 667 (900)
.+++|+||||||||+||.+|++.+...+..++.+++.++......+ |. .+....+.++. ....||+||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--------~~---~~~~~~~~l~~l~~~dLLiID 170 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--------YD---NGQSGEKFLQELCKVDLLVLD 170 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--------Hh---ccchHHHHHHHhcCCCEEEEc
Confidence 3699999999999999999999998766777888877654422111 10 01111122222 345799999
Q ss_pred cc--cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 668 EV--EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 668 Ei--dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
|+ +......+..|+++++... . ...-.|+|||.+.+.+
T Consensus 171 Dlg~~~~s~~~~~~l~~ii~~R~-~---------~~~ptiitSNl~~~~l 210 (248)
T PRK12377 171 EIGIQRETKNEQVVLNQIIDRRT-A---------SMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-h---------cCCCEEEEcCCCHHHH
Confidence 99 5567778899999998521 1 1233788999987655
No 381
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=4.2e-08 Score=105.47 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=111.8
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc--ccccccc---ccccccCCCCCCcccccc---cchhHH----H
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM--SEYMEQH---SVSRLIGAPPGYVGHEEG---GQLTEA----V 656 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~--~~~~~~~---~~~~l~G~~~g~~g~~~~---~~l~~~----~ 656 (900)
+.++|+||+|+|||++++.++..+... .++...+ ....... .+...+|.+. .+.... ..+... .
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLET--EGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999887532 2222111 1111111 1122344332 121111 122222 2
Q ss_pred HhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHH
Q 046258 657 RRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV 736 (900)
Q Consensus 657 ~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (900)
......|+++||++.+++..++.|..+.+- . .+ ....+.|+++.........
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~-~-~~------~~~~~~vvl~g~~~~~~~l-------------------- 171 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNF-Q-TD------NAKLLQIFLVGQPEFRETL-------------------- 171 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCc-c-cC------CCCeEEEEEcCCHHHHHHH--------------------
Confidence 244567999999999999888777655442 1 01 1123455677654321111
Q ss_pred HhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 737 RKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 737 ~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
...-...+.+|+...+.++|++.+++..++...+.... ......+++++++.|.+.+ .++ .|.+..++..++
T Consensus 172 ~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g-----~~~~~~~~~~~~~~i~~~s-~G~--p~~i~~l~~~~~ 243 (269)
T TIGR03015 172 QSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAG-----NRDAPVFSEGAFDAIHRFS-RGI--PRLINILCDRLL 243 (269)
T ss_pred cCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCCCcCHHHHHHHHHHc-CCc--ccHHHHHHHHHH
Confidence 11112457788878899999999999999888887321 1113568999999999763 233 566666665554
Q ss_pred HHH
Q 046258 817 VTE 819 (900)
Q Consensus 817 ~~~ 819 (900)
...
T Consensus 244 ~~a 246 (269)
T TIGR03015 244 LSA 246 (269)
T ss_pred HHH
Confidence 443
No 382
>PRK04132 replication factor C small subunit; Provisional
Probab=98.93 E-value=6.4e-09 Score=124.52 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=123.1
Q ss_pred CeEEEc--CCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcC-----CCe
Q 046258 202 NPVLIG--EPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAE-----GKV 274 (900)
Q Consensus 202 ~vlL~G--~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~-----~~~ 274 (900)
+-+..| |++.||||+|++||+.+...+. +.+++++|+++... . ..++.+++.+.... +..
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~-----~~~~lElNASd~rg----i----d~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENW-----RHNFLELNASDERG----I----NVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccc-----cCeEEEEeCCCccc----H----HHHHHHHHHHHhcCCcCCCCCE
Confidence 345668 9999999999999999854322 44699999886421 1 13555554443221 236
Q ss_pred EEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHH
Q 046258 275 ILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILR 352 (900)
Q Consensus 275 iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr 352 (900)
|+||||+|.|... +.+.|++.|+. +.+++|.+||... ...+.+++|++.+.+..|+.++....++
T Consensus 633 VvIIDEaD~Lt~~--------AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALTQD--------AQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCCHH--------HHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 8999999999653 55699999984 7899999987654 2678999999999999999888888888
Q ss_pred HHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 353 GLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 353 ~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
.+++. .++.++++++..++..+.+.+ ..|+.+++.+++
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 88775 467889999999999996654 488888887664
No 383
>PRK08116 hypothetical protein; Validated
Probab=98.93 E-value=6.7e-09 Score=110.41 Aligned_cols=128 Identities=19% Similarity=0.341 Sum_probs=84.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDE 668 (900)
+++|+|++|||||+||.+|++.+...+.+++.++.+++..... .. |.+.. .....+.+. -....+|+|||
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~-----~~---~~~~~-~~~~~~~~~~l~~~dlLviDD 186 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK-----ST---YKSSG-KEDENEIIRSLVNADLLILDD 186 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH-----HH---Hhccc-cccHHHHHHHhcCCCEEEEec
Confidence 5999999999999999999999876667888888776543211 10 10000 011112222 12456999999
Q ss_pred c--cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 V--EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 i--dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
+ ++.....+..|+++|+... . .+..+|+|||..++.+ ...+...+++
T Consensus 187 lg~e~~t~~~~~~l~~iin~r~-~---------~~~~~IiTsN~~~~eL---------------------~~~~~~ri~s 235 (268)
T PRK08116 187 LGAERDTEWAREKVYNIIDSRY-R---------KGLPTIVTTNLSLEEL---------------------KNQYGKRIYD 235 (268)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHH---------------------HHHHhHHHHH
Confidence 9 6677788899999998521 1 2345999999987665 3345677788
Q ss_pred ccc---ceeecCCC
Q 046258 747 RLD---EIVVFDPL 757 (900)
Q Consensus 747 R~~---~~i~f~pl 757 (900)
|+- ..|.|...
T Consensus 236 Rl~e~~~~v~~~g~ 249 (268)
T PRK08116 236 RILEMCTPVENEGK 249 (268)
T ss_pred HHHHcCEEEEeeCc
Confidence 862 34555443
No 384
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.92 E-value=8.8e-09 Score=122.85 Aligned_cols=160 Identities=24% Similarity=0.325 Sum_probs=101.7
Q ss_pred CCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcC----CC-----CC----------------C
Q 046258 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRG----DV-----PS----------------N 232 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~----~~-----p~----------------~ 232 (900)
|..|+|++..++.+.-.+......++||.|++|||||++|++|+..+..- +. |. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 56799999988877665555555679999999999999999999988310 00 00 0
Q ss_pred CCCcEEEEEechhhh---hcccccchHHHHHH-----HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhh
Q 046258 233 LADVRLIALDMGALV---AGAKYRGEFEERLK-----AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML 304 (900)
Q Consensus 233 l~~~~~~~~~~~~l~---~g~~~~g~~~~~l~-----~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l 304 (900)
....+|+.+.++... .|+. +++..+. ...+.+..+++| |||||||+.+.+..+. .|+.+|
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~L~~A~~G-iL~lDEi~~l~~~~q~--------~Ll~~l 150 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSL---DIERALREGEKAFQPGLLAEAHRG-ILYIDEVNLLDDHLVD--------VLLDAA 150 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcc---cHHHHhhcCCeeecCcceeecCCC-eEEeChhhhCCHHHHH--------HHHHHH
Confidence 113457777665432 1221 1111111 011223334544 5999999999765544 888888
Q ss_pred hcCc---------------EEEEEecCHHHHHHHhhccHHHHcccce-eeecCC-ChHHHHHHHHH
Q 046258 305 ARGQ---------------LRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEP-SVPDTVSILRG 353 (900)
Q Consensus 305 ~~g~---------------irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P-~~~e~~~ilr~ 353 (900)
+.|. +++|+++|+.+. ...+.|..||.. |.+..+ +.+++.++++.
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 7663 678888776431 356889999985 555544 45667777754
No 385
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=1e-08 Score=119.86 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=124.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCC----CCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--CCcEEEEEe---chh
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRT----KNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--ADVRLIALD---MGA 245 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~----~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--~~~~~~~~~---~~~ 245 (900)
..+++++|+.+.+..|..++.... ..+ ++|+||||||||++++.++..+... +-+.. .++....-+ ...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~-~~Ew~npv~~~~~~~~~~~~~s 159 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ-VQEWSNPTLPDFQKNDHKVTLS 159 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH-HHHHhhhhhhcccccccccchh
Confidence 467789999999999998887532 222 8999999999999999999876211 00000 000000000 000
Q ss_pred hhhcccccchHHHHHHHHHHHHHH---------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHh-hhhhcCcEEEEEec
Q 046258 246 LVAGAKYRGEFEERLKAVLKEVEE---------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFK-PMLARGQLRCIGAT 315 (900)
Q Consensus 246 l~~g~~~~g~~~~~l~~~~~~~~~---------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~-~~l~~g~irvI~at 315 (900)
+.........-.+.++.++..+.. .....||||||++.+... +.....+.|+ .+.+.+.+-+|+++
T Consensus 160 ~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 160 LESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----DTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred hhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----hHHHHHHHHHHHhhcCCCceEEEEe
Confidence 000000001112233344443331 234679999999877642 1223344555 56677877788877
Q ss_pred CHHHH------HHHhh----ccHHHHc--ccceeeecCCChHHHHHHHHHHHHHHhccc--Cccc-ChhHHHHHHHHhhh
Q 046258 316 TLEEY------RKYVE----KDAAFER--RFQQVYVAEPSVPDTVSILRGLKEKYEGHH--GVRI-QDRALVVAAQLSAR 380 (900)
Q Consensus 316 t~~~~------~~~~~----~d~al~~--Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~--~v~i-~~eal~~l~~~s~~ 380 (900)
|.... ...+. +.+.+.+ |+..|.|...+.......|+.++..-.... ...+ +++++..++..+.+
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 63322 00011 3467776 666688887788887887877776522211 1223 57888888888877
Q ss_pred hccCCCChhhHHHHHHHHHH
Q 046258 381 YITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 381 ~~~~~~~p~~a~~Lld~a~a 400 (900)
.+. .|+..|..+|.
T Consensus 316 DiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 316 DIR------SAINSLQFSSS 329 (637)
T ss_pred hHH------HHHHHHHHHHh
Confidence 766 78888887763
No 386
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.3e-08 Score=109.60 Aligned_cols=172 Identities=17% Similarity=0.272 Sum_probs=110.2
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
.|++++|++..++.+...+....-+|. ||+||+|+|||++|+.+|+.+........ ...++.+... .|...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~i--- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKSI--- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCCC---
Confidence 467899999999999999987666665 88999999999999999998754322111 1123333221 11111
Q ss_pred HHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecCHHHHHHHhhccHH
Q 046258 256 FEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 256 ~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att~~~~~~~~~~d~a 329 (900)
..+.++.+...+.. .++.-|++||++|.+.. .++|.|+..+++ +.+.++.+.+.. ..-|.
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~--------~a~naLLK~LEepp~~t~~il~~~~~~------~ll~T 139 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE--------QAQNAFLKTIEEPPKGVFIILLCENLE------QILDT 139 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH--------HHHHHHHHHhcCCCCCeEEEEEeCChH------hCcHH
Confidence 12234555443332 13356899999988743 456789999875 334444443433 26789
Q ss_pred HHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
+++|++.+.+..|+.++....+.. .+. .++++.+..++.++
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~---~~~-----~~~~~~~~~l~~~~ 180 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISY---KYN-----DIKEEEKKSAIAFS 180 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHH---Hhc-----CCCHHHHHHHHHHc
Confidence 999999999988888776555432 211 35556655555555
No 387
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.90 E-value=4.5e-09 Score=124.92 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=103.0
Q ss_pred CCCCchHHHHHHHHHHccC---------------------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 046258 180 PVIGRDEEIRRVVRILSRR---------------------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRL 238 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~---------------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~ 238 (900)
.+.|.+...+.++-.|-.. ...||||+|+||||||.+|+++|+...+.... .+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yt---sG~~~ 527 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT---SGKSS 527 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccC---CCCCC
Confidence 4788888777776655321 22389999999999999999999987655421 14446
Q ss_pred EEEechhhhh-cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC----------
Q 046258 239 IALDMGALVA-GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG---------- 307 (900)
Q Consensus 239 ~~~~~~~l~~-g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------- 307 (900)
..++|.+... -....|++. .-.+.+..+++|+ ++|||++.+....|. .|.++|+.+
T Consensus 528 s~vgLTa~~~~~d~~tG~~~----le~GaLvlAdgGt-L~IDEidkms~~~Q~--------aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAM----IQPGAVVLANGGV-CCIDELDKCHNESRL--------SLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccccchhhhcccccCccc----ccCCcEEEcCCCe-EEecchhhCCHHHHH--------HHHHHHhCCEEEEecCCcc
Confidence 6666655421 000012111 1112233456565 999999998766554 777777643
Q ss_pred -----cEEEEEecCHHHHH--------HHhhccHHHHcccceeee--cCCChHHHHHHHHHHHHH
Q 046258 308 -----QLRCIGATTLEEYR--------KYVEKDAAFERRFQQVYV--AEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 308 -----~irvI~att~~~~~--------~~~~~d~al~~Rf~~i~i--~~P~~~e~~~ilr~l~~~ 357 (900)
+++||+++|+..-+ +-+...+.+.+||+.|.+ +.|+.+.-..|-..+...
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 47899999874211 224678999999997553 667665555555655544
No 388
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=4.7e-09 Score=122.14 Aligned_cols=201 Identities=17% Similarity=0.225 Sum_probs=121.2
Q ss_pred CCCCchHHHHHHHHHHccC------------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEE---Eech
Q 046258 180 PVIGRDEEIRRVVRILSRR------------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIA---LDMG 244 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~---~~~~ 244 (900)
.++|.+.....++-.+... ...|+||+|+||||||++|+.+|+.+.+. .|+. .++.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------~~~~~~~~~~~ 274 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------VYTTGKGSSAV 274 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------eEcCCCCCCcC
Confidence 4788888766665555332 12389999999999999999999987332 1222 1222
Q ss_pred hhhhccc---ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------
Q 046258 245 ALVAGAK---YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------- 307 (900)
Q Consensus 245 ~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------- 307 (900)
.+..... ..|++. ++ .+.+..+++|+ ++|||++.+.+..+. .|..+|+.+
T Consensus 275 ~l~~~~~~~~~~g~~~--~~--~G~l~~A~~Gi-l~iDEi~~l~~~~q~--------~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 275 GLTAAVTRDPETREFT--LE--GGALVLADNGV-CCIDEFDKMDDSDRT--------AIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CccccceEccCcceEE--ec--CccEEecCCCE-EEEechhhCCHHHHH--------HHHHHHhcCEEEEEeCCEEEEec
Confidence 2221100 011110 00 11223345555 999999998766554 777777543
Q ss_pred -cEEEEEecCHHHH--------HHHhhccHHHHcccceee--ecCCChHHHHHHHHHHHHHHhccc-------CcccChh
Q 046258 308 -QLRCIGATTLEEY--------RKYVEKDAAFERRFQQVY--VAEPSVPDTVSILRGLKEKYEGHH-------GVRIQDR 369 (900)
Q Consensus 308 -~irvI~att~~~~--------~~~~~~d~al~~Rf~~i~--i~~P~~~e~~~ilr~l~~~~~~~~-------~v~i~~e 369 (900)
.+++|+++|+.+- ..-+...+++.+||+.+. .+.|+.+....|.+.+...+.... ...++.+
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 4678888886531 111367899999998643 377888888888877665432111 1235666
Q ss_pred HHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhh
Q 046258 370 ALVVAAQLSARYITGRHLPDKAIDLVDEACANVR 403 (900)
Q Consensus 370 al~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~ 403 (900)
.+.....+++.++.. .+++.+.+++-......+
T Consensus 422 ~l~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 422 FLRKYIAYAREKIKP-KLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhc
Confidence 676666777664322 266777777666655544
No 389
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.90 E-value=4.1e-09 Score=110.49 Aligned_cols=188 Identities=15% Similarity=0.291 Sum_probs=104.4
Q ss_pred CCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec-hh--------h-----
Q 046258 181 VIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM-GA--------L----- 246 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-~~--------l----- 246 (900)
++||+.+++++.+.+.+.....++|+||.|+|||++++.+...+...+.. .+.+++ .. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~-------~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYK-------VVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EEC-------CCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc-------EEEEecccchhhhHHHHHHHHHH
Confidence 58999999999999988777889999999999999999999987433211 111111 00 0
Q ss_pred --------hh----cc-------cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhh-hCCCCCChhhHHHhHh----h
Q 046258 247 --------VA----GA-------KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVL-GAGRTEGSMDAANLFK----P 302 (900)
Q Consensus 247 --------~~----g~-------~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~-~~~~~~~~~~~~~~L~----~ 302 (900)
.. +. .........+..+++.+......+||+|||++.+. ... ........|. .
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---EDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---chHHHHHHHHHHHhh
Confidence 00 00 01123345566777777766556999999999998 211 1222333333 3
Q ss_pred hhhcCcEEEEEecC-HHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 303 MLARGQLRCIGATT-LEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 303 ~l~~g~irvI~att-~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
......+.+|.+++ ......+....+.+..|+..+.+...+.++..++++.....+ .++.++++.+..+..++.++
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 33345666666654 333333344556677788778888888888888887665543 22235888888888888544
No 390
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.90 E-value=3.8e-08 Score=107.10 Aligned_cols=122 Identities=22% Similarity=0.350 Sum_probs=80.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||||||||+||.+||+.+...+..++.+++.++......... . .........+.+. ...+|+||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~------~~~~~~~~~~~l~--~~DLLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-N------NDKELEEVYDLLI--NCDLLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-c------cchhHHHHHHHhc--cCCEEEEec
Confidence 369999999999999999999999877778888888776442211100 0 0000000112222 347999999
Q ss_pred ccc--cCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEK--AHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk--~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
+.. ..+..++.|+.+++... . .+.-+|+|||.+++.+ ...+.+.+++
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~-~---------~~k~tIiTSNl~~~el---------------------~~~~~eri~S 303 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRL-L---------RQKKMIISTNLSLEEL---------------------LKTYSERISS 303 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHH---------------------HHHHhHHHHH
Confidence 954 46667888999998521 1 1234899999987665 3445677788
Q ss_pred cccc
Q 046258 747 RLDE 750 (900)
Q Consensus 747 R~~~ 750 (900)
|+-.
T Consensus 304 RL~~ 307 (329)
T PRK06835 304 RLLG 307 (329)
T ss_pred HHHc
Confidence 8743
No 391
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.90 E-value=1.2e-08 Score=113.08 Aligned_cols=158 Identities=23% Similarity=0.329 Sum_probs=94.1
Q ss_pred CCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe----chhhhhccccc
Q 046258 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD----MGALVAGAKYR 253 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~----~~~l~~g~~~~ 253 (900)
++.+++.+..+..++..+.. +.|++|+||||||||++|+.+|..+.....+ ....++.+. ...++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 45578888999999888774 5699999999999999999999988543222 123344443 22344443221
Q ss_pred c-hH---HHHHHHHHHHHHHc-CCCeEEEEcchhhhhhCCCCCChh---h----H--HHhHh--------hhhhcCcEEE
Q 046258 254 G-EF---EERLKAVLKEVEEA-EGKVILFIDEIHLVLGAGRTEGSM---D----A--ANLFK--------PMLARGQLRC 311 (900)
Q Consensus 254 g-~~---~~~l~~~~~~~~~~-~~~~iL~iDEi~~l~~~~~~~~~~---~----~--~~~L~--------~~l~~g~irv 311 (900)
+ .+ .+.+..+...+... ..+.|||||||++-..+.-.+.-. + . ...-+ .+.--.++++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 1 01 11233333444432 357899999998654322100000 0 0 00000 0111246899
Q ss_pred EEecCHHHHHHHhhccHHHHcccceeeecC
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQQVYVAE 341 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~~i~i~~ 341 (900)
|||+|..+. .+...|.||+|||..|.+..
T Consensus 329 IgTMNt~Dr-s~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 329 IGLMNTADR-SLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred EEecCcccc-chhhccHHHHhhhheEEecC
Confidence 999987763 34458999999999888754
No 392
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.6e-08 Score=106.84 Aligned_cols=142 Identities=18% Similarity=0.283 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc-c-ccccccCCCCC-
Q 046258 566 AVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ-H-SVSRLIGAPPG- 642 (900)
Q Consensus 566 av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-~-~~~~l~G~~~g- 642 (900)
+.+.+..++... +-...+||+||+|+||+.+|..+|+.+.+...+ -.|..+... | ++..+. |.+
T Consensus 5 ~~~~L~~~i~~~--------rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~~~~~HPD~~~i~--p~~~ 71 (290)
T PRK05917 5 AWEALIQRVRDQ--------KVPSAIILHGQDLSNLSARAYELASLILKETSP---EAAYKISQKIHPDIHEFS--PQGK 71 (290)
T ss_pred HHHHHHHHHHcC--------CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHHhcCCCCCEEEEe--cCCC
Confidence 345556666443 222369999999999999999999999874322 122111100 0 011111 111
Q ss_pred --CcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 643 --YVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 643 --~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
.++.+..+.+.+.+.. .++.|++||++|++..+.+|.||+.||+ ...+++||+.|+.
T Consensus 72 ~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~------ 134 (290)
T PRK05917 72 GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAK------ 134 (290)
T ss_pred CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCC------
Confidence 1222222334444433 3458999999999999999999999998 4578888888876
Q ss_pred cccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC
Q 046258 717 SGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS 758 (900)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~ 758 (900)
...+.|.+++|| ..+.|+|+.
T Consensus 135 --------------------~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 135 --------------------PQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred --------------------hhhCcHHHHhcc-eEEEccchh
Confidence 467899999999 889999864
No 393
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.89 E-value=2e-08 Score=110.30 Aligned_cols=175 Identities=17% Similarity=0.321 Sum_probs=118.0
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEE
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVV 664 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vl 664 (900)
+..+++|+||+|.|||+|+++++........ .++.+....|....- ..+. .+...++.+...-.++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v-~a~~-----------~~~~~~Fk~~y~~dll 179 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV-KALR-----------DNEMEKFKEKYSLDLL 179 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHH-HHHH-----------hhhHHHHHHhhccCee
Confidence 3446999999999999999999998866433 355555544432211 1111 0122223333344699
Q ss_pred EEccccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccH
Q 046258 665 LFDEVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP 742 (900)
Q Consensus 665 llDEidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (900)
+||+|+.+.. ..+..|...+.. +.+ .+-.+|+||...+..+ ..+.|
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~--l~~--------~~kqIvltsdr~P~~l----------------------~~~~~ 227 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNA--LLE--------NGKQIVLTSDRPPKEL----------------------NGLED 227 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHH--HHh--------cCCEEEEEcCCCchhh----------------------ccccH
Confidence 9999998654 345555555542 000 1125888998877554 34679
Q ss_pred HHHhccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 743 ELLNRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 743 ~ll~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
.|.+||. .++...|++.+.+..|+..... .. .+.++++++.+|+.. ++.+ +|+|+..+.+...
T Consensus 228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~-------~~--~~~i~~ev~~~la~~-~~~n--vReLegaL~~l~~ 292 (408)
T COG0593 228 RLRSRLEWGLVVEIEPPDDETRLAILRKKAE-------DR--GIEIPDEVLEFLAKR-LDRN--VRELEGALNRLDA 292 (408)
T ss_pred HHHHHHhceeEEeeCCCCHHHHHHHHHHHHH-------hc--CCCCCHHHHHHHHHH-hhcc--HHHHHHHHHHHHH
Confidence 9999995 5889999999999999888443 33 479999999999975 6667 9999988876544
No 394
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.88 E-value=1.2e-09 Score=104.71 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=67.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH-------HHHHHHHHHHHHcCCCe
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE-------ERLKAVLKEVEEAEGKV 274 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~-------~~l~~~~~~~~~~~~~~ 274 (900)
||||+||||||||++|+.+|+.+ +.+++.++|+.........|.+. -.-..+...+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 68999999999999999999999 66688888876422111111000 0000000001 1378
Q ss_pred EEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC---------------------cEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 275 ILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG---------------------QLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 275 iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g---------------------~irvI~att~~~~~~~~~~d~al~~R 333 (900)
|+||||++...+ ++.+.|.++++.+ .+++|+++|+.. ......+++|.+|
T Consensus 68 il~lDEin~a~~--------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAPP--------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG--H--------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCCH--------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 999999986543 3344555555321 288999998766 3344688999999
Q ss_pred c
Q 046258 334 F 334 (900)
Q Consensus 334 f 334 (900)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 395
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=8.5e-09 Score=112.36 Aligned_cols=142 Identities=22% Similarity=0.302 Sum_probs=91.0
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc------ccc-c-ccccccCC----CCC----Ccccccccch
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY------MEQ-H-SVSRLIGA----PPG----YVGHEEGGQL 652 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~------~~~-~-~~~~l~G~----~~g----~~g~~~~~~l 652 (900)
..+||+||+|+|||++|+.+|+.+.+....--...|+.. ... | +...+.-. ..| .++.+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 469999999999999999999999763210000112221 100 0 00111000 001 1222222334
Q ss_pred hHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHH
Q 046258 653 TEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVA 728 (900)
Q Consensus 653 ~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~ 728 (900)
.+.+.. ..+.|+++|+++.+++..++.|++.|++. ..++.||++|+.
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~~~~~Ilvth~------------------ 152 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PPQVVFLLVSHA------------------ 152 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cCCCEEEEEeCC------------------
Confidence 444443 34579999999999999999999999972 134656666665
Q ss_pred HHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 729 RDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 729 ~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
...+.|.+.+|| ..+.|.|++.+++...+..
T Consensus 153 --------~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 153 --------ADKVLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --------hHhChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 345788999999 9999999999988776643
No 396
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.87 E-value=2.5e-08 Score=103.19 Aligned_cols=195 Identities=13% Similarity=0.159 Sum_probs=128.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..+++++++++.+..+.+.....+-.|+|+|||||+|||+..-+.|..+.....+ +..+..+|.++-.. .+-
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m~lelnaSd~rg----id~ 109 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSMLLELNASDDRG----IDP 109 (360)
T ss_pred chhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhHHHHhhccCccC----Ccc
Confidence 3566789999999888888777777799999999999999999999988554222 22233444433211 111
Q ss_pred HHHHHHHHHHHHHH------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhcc
Q 046258 256 FEERLKAVLKEVEE------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKD 327 (900)
Q Consensus 256 ~~~~l~~~~~~~~~------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d 327 (900)
....++ .|..... ......+++||+|.+..+ +.|.|.+..+. .+.|+...++.... ..
T Consensus 110 vr~qi~-~fast~~~~~fst~~~fKlvILDEADaMT~~--------AQnALRRviek~t~n~rF~ii~n~~~k-----i~ 175 (360)
T KOG0990|consen 110 VRQQIH-LFASTQQPTTYSTHAAFKLVILDEADAMTRD--------AQNALRRVIEKYTANTRFATISNPPQK-----IH 175 (360)
T ss_pred hHHHHH-HHHhhccceeccccCceeEEEecchhHhhHH--------HHHHHHHHHHHhccceEEEEeccChhh-----cC
Confidence 111111 1221211 124668999999998654 55699888773 35666655565543 78
Q ss_pred HHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHh
Q 046258 328 AAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 328 ~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
|++.+||+.+.+.+.+.......+..+++. ....++++...+++.++.+.+. .+.+.++.....+
T Consensus 176 pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDmr------~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 176 PAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDMR------VALNYLQSILKKV 240 (360)
T ss_pred chhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHHH------HHHHHHHHHHHHh
Confidence 999999998888665555555566666554 4566778888888777766554 6777777666554
No 397
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.86 E-value=1.2e-08 Score=105.61 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=119.2
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC---ceeEecccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN---LLVRIDMSE 626 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~---~~i~i~~~~ 626 (900)
.+..+.....++++++.+..+.+.. ..++-| |+||+||||||||+...+.|+.+++... .+..++.|+
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~-------~~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS-------GMPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc-------cCCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 4556666667777777776666653 233455 7999999999999999999999987311 111222221
Q ss_pred cccccccccccCCCCCCcccccccchhHHHH-------hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 627 YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-------RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 627 ~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
-.|- +.+- ..-.++...+ .+....++|||.|.+..+.|++|.++++. ..
T Consensus 104 ---------~rgi--d~vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t 159 (360)
T KOG0990|consen 104 ---------DRGI--DPVR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YT 159 (360)
T ss_pred ---------ccCC--cchH--HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hc
Confidence 1110 0000 0000111111 23567899999999999999999998885 23
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.|+.|+..+|.. ..+.|++.+|| ..+.|.|++......++.+.+..-
T Consensus 160 ~n~rF~ii~n~~--------------------------~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e------ 206 (360)
T KOG0990|consen 160 ANTRFATISNPP--------------------------QKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESE------ 206 (360)
T ss_pred cceEEEEeccCh--------------------------hhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcc------
Confidence 578888888873 55789999999 788999999998888888877621
Q ss_pred cCCccccCHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLA 796 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~ 796 (900)
.+..+++....+..
T Consensus 207 ---~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 207 ---QKETNPEGYSALGR 220 (360)
T ss_pred ---hhhcCHHHHHHHHH
Confidence 24556666555443
No 398
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=1e-08 Score=109.01 Aligned_cols=156 Identities=19% Similarity=0.315 Sum_probs=100.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
++||+||+|||||.+++.+-..+.....-...++++..+.......++-.. .....++.+ .. ......|+|+|++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~---l~k~~~~~~-gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESK---LEKRRGRVY-GP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTT---ECECTTEEE-EE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhc---EEcCCCCCC-CC-CCCcEEEEEeccc
Confidence 599999999999999988766554432235578888776555444433221 111111111 00 0123469999999
Q ss_pred cccCHH------HHHHHHHHhhCCeeecCCC-ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccH
Q 046258 670 EKAHIS------VFNTLLQVLDDGRLTDGQG-RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP 742 (900)
Q Consensus 670 dk~~~~------~~~~Ll~~ld~g~~~d~~g-~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (900)
+...++ ..+.|.|+++.|-+.|... .-....++.+|+++|.+.. ...+++
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G-----------------------r~~is~ 166 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG-----------------------RNPISP 166 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-------------------------SHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC-----------------------CCCCCh
Confidence 876544 5688999999988887543 3456678999999987421 345789
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 743 ELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 743 ~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
-|++.| .++.+.+++.+.+..|....+....
T Consensus 167 R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 167 RFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp HHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred HHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 999999 8899999999999999999887554
No 399
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.6e-08 Score=106.53 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=101.2
Q ss_pred CCCCchHHHHHHHHHHcc-CCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--------------CCcEEEEEec
Q 046258 180 PVIGRDEEIRRVVRILSR-RTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--------------ADVRLIALDM 243 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~-~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--------------~~~~~~~~~~ 243 (900)
.++|.+..+.++...... ...+| +||+||||+|||++|.++|+.+........- ..-.+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 477888888888888774 45667 9999999999999999999998543221000 0124677766
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHH
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLE 318 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~ 318 (900)
+..-. ..-..+.++.+....... .+.-|++|||+|.|.. +++|.|+..++. ...++|..++..
T Consensus 82 s~~~~----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 82 SDLRK----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cccCC----CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 54322 112344455555444333 3456899999999965 567799988874 467888888743
Q ss_pred HHHHHhhccHHHHcccceeeecCCCh
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSV 344 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~ 344 (900)
.. .-+.+++|+..+.+..|+.
T Consensus 150 ~~-----il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 150 SK-----ILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred hh-----ccchhhhcceeeecCCchH
Confidence 32 5568999999988866543
No 400
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=1.6e-10 Score=105.08 Aligned_cols=108 Identities=25% Similarity=0.317 Sum_probs=60.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh-h----hhcccccc----hHHHHHHHHHHHHHHcCC
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA-L----VAGAKYRG----EFEERLKAVLKEVEEAEG 272 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~-l----~~g~~~~g----~~~~~l~~~~~~~~~~~~ 272 (900)
|+||.|+||+|||++|+++|+.+ +..|..+.+.. + +-|..+.. .|+-.-.-++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999998 77788887652 2 11211110 0000000001
Q ss_pred CeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEEEEecCHHHHHHHhhccHHHHcccc
Q 046258 273 KVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRCIGATTLEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 273 ~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irvI~att~~~~~~~~~~d~al~~Rf~ 335 (900)
.-|+++|||.+..+..|+ .|+++|+++. +.||++.|+.+...-+....++..||-
T Consensus 63 ~~ill~DEiNrappktQs--------AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQS--------ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS-HHHHH--------HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCCHHHHH--------HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 127999999998887776 8888887553 467777798777777788889999984
No 401
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=5e-08 Score=114.19 Aligned_cols=227 Identities=15% Similarity=0.174 Sum_probs=120.2
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE----eccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMS 625 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~----i~~~ 625 (900)
.++++...+.++++++.++.|...+.....+ ..|...++|+||||+|||++++.+|..+.. .++. ++|.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l~~---~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKELGI---QVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHhhh---HHHHHhhhhhhc
Confidence 5778888899999999999888887655222 233335899999999999999999988743 2211 2222
Q ss_pred ccccccccccccCCCCCCcccccccchhHHHH-------------hCCCeEEEEccccccC----HHHHHHHH-HHhhCC
Q 046258 626 EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-------------RRPYSVVLFDEVEKAH----ISVFNTLL-QVLDDG 687 (900)
Q Consensus 626 ~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------------~~~~~vlllDEidk~~----~~~~~~Ll-~~ld~g 687 (900)
.....+.....++..-+++ ......+...+. .....|||||||+.+. ..+++.|+ ...+.+
T Consensus 149 ~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~ 227 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIG 227 (637)
T ss_pred ccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCC
Confidence 1111111000011000000 000111111111 1245699999996543 23334333 233332
Q ss_pred eeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHH
Q 046258 688 RLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKV 765 (900)
Q Consensus 688 ~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I 765 (900)
+ + -+++|+|-|. ...-.... ..-.....+.+++++ |+ .+|.|+|++...+.+.
T Consensus 228 ~----------~-pLI~I~TE~~-~~~~~~~~------------~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 228 R----------C-PLVFIITESL-EGDNNQRR------------LLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKF 282 (637)
T ss_pred C----------c-eEEEEecCCc-cccccccc------------cccchhcccCHhHhcccce-eEEEeCCCCHHHHHHH
Confidence 2 1 1233333221 10000000 000001224589997 66 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccc-CHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 766 ARLQMKDVAIRLAERGVALAV-TDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 766 ~~~~l~~~~~~~~~~~~~~~~-~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
+.+.+........ ....+ ++++++.|+.. -.|. +|..-+.++-.
T Consensus 283 L~rIl~~E~~~~~---~~~~~p~~~~l~~I~~~-s~GD--iRsAIn~LQf~ 327 (637)
T TIGR00602 283 LNRIVTIEAKKNG---EKIKVPKKTSVELLCQG-CSGD--IRSAINSLQFS 327 (637)
T ss_pred HHHHHHhhhhccc---cccccCCHHHHHHHHHh-CCCh--HHHHHHHHHHH
Confidence 8888874322111 12233 67899988863 2222 66666666443
No 402
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.80 E-value=4.2e-08 Score=114.38 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=126.0
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCC---C-CcccccccchhHHHHhCCCeE
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPP---G-YVGHEEGGQLTEAVRRRPYSV 663 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~---g-~~g~~~~~~l~~~~~~~~~~v 663 (900)
+|.+++.|+.||||+++++.++..+.. ..||+.+..+ .+...|+|.-. . ..|.. ..-.+.+..+.++|
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~--~~~pGlla~Ah~Gv 96 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRP--VAQRGLLAEADGGV 96 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCc--CCCCCceeeccCCE
Confidence 578999999999999999999998844 3466555543 23356777410 0 00000 01123445567899
Q ss_pred EEEccccccCHHHHHHHHHHhhCCeeecCC-Cceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
||+||++.+++.+++.|++.|++|.++-.. |..+.+ .++++|+|-|.. + ....++
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-~----------------------~~~~L~ 153 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-E----------------------EDERAP 153 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-h----------------------cccCCC
Confidence 999999999999999999999999887533 555555 466777774431 1 136789
Q ss_pred HHHHhcccceeecCCCCHHHHHHH--HHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCC-CchHHHHHH
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKV--ARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIY-GARPIRRWL 812 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I--~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~L~~~i 812 (900)
++|++||+..|.+.+++..+.... ....+....+++. .+.++++.+++++..+..... |.|....++
T Consensus 154 ~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~ll 223 (584)
T PRK13406 154 AALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAAAAALGIASLRAPLLAL 223 (584)
T ss_pred HHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 999999999999999887654321 1112222233331 478999999998866543332 456665555
No 403
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.80 E-value=2.5e-07 Score=93.76 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=136.8
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCC-CCCCcEE-------EEEec-hh--
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPS-NLADVRL-------IALDM-GA-- 245 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~-~l~~~~~-------~~~~~-~~-- 245 (900)
.++.++++.+.-..+........-+|.+++||+|+||-|.+-+|.+.+...+++. .+....| ++++. ++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 4556888888888887777756678999999999999999999999997755541 1111111 11110 00
Q ss_pred hhh-cccccchHHH-HHHHHHHHHHHc--------CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh--cCcEEEEE
Q 046258 246 LVA-GAKYRGEFEE-RLKAVLKEVEEA--------EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA--RGQLRCIG 313 (900)
Q Consensus 246 l~~-g~~~~g~~~~-~l~~~~~~~~~~--------~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~irvI~ 313 (900)
.+. .-...|.... -++.+++++.++ ..--+++|-|+|.|..+.|. .|++.|+ .+.+|+|.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~--------aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH--------ALRRTMEKYSSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH--------HHHHHHHHHhcCceEEE
Confidence 000 0011222222 234455554432 22348999999999766555 8999888 46788888
Q ss_pred ecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 314 ATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
.+|.-. ..-+++++|+-.|.++.|+.+|...++..++++ .++.++.+.+..+++-+.|.+. .|+-
T Consensus 163 ~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nLR------rAll 227 (351)
T KOG2035|consen 163 VCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNLR------RALL 227 (351)
T ss_pred EecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccHH------HHHH
Confidence 875432 146789999998999999999999999888877 6788999999999998877655 5665
Q ss_pred HHHHHHH
Q 046258 394 LVDEACA 400 (900)
Q Consensus 394 Lld~a~a 400 (900)
.++..+.
T Consensus 228 mlE~~~~ 234 (351)
T KOG2035|consen 228 MLEAVRV 234 (351)
T ss_pred HHHHHHh
Confidence 5555543
No 404
>PRK06526 transposase; Provisional
Probab=98.79 E-value=3.9e-09 Score=110.93 Aligned_cols=105 Identities=22% Similarity=0.372 Sum_probs=72.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh-CCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDE 668 (900)
+++|+||||||||+||.+|+..+...+..+..+++.++.+....+. ..+.+...+.. ....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~------------~~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH------------HAGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH------------hcCcHHHHHHHhccCCEEEEcc
Confidence 6999999999999999999998876566666666665543322111 01223233332 3568999999
Q ss_pred ccccC--HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 669 VEKAH--ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 669 idk~~--~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
++..+ +...+.|+++++.. +.+..+|+|||.++..+..
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r-----------~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSR-----------YERASLIVTSNKPFGRWGE 207 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHH-----------HhcCCEEEEcCCCHHHHHH
Confidence 99764 67778899999742 1223489999999876643
No 405
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.78 E-value=7.1e-09 Score=81.08 Aligned_cols=53 Identities=34% Similarity=0.543 Sum_probs=49.1
Q ss_pred HHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 046258 17 AHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMK 71 (900)
Q Consensus 17 A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~ 71 (900)
|+++|+++||.+|+++|||++|+.++++.+.++|+.+|+|+ +.+++.+++.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~--~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDP--EQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHH--HHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCH--HHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999 999999987763
No 406
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.8e-08 Score=108.22 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCCCC-chHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCC----------------CCCcEEEE
Q 046258 179 DPVIG-RDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSN----------------LADVRLIA 240 (900)
Q Consensus 179 ~~~iG-~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~----------------l~~~~~~~ 240 (900)
+.++| ++..++.+...+....-.|. ||+||+|+||+++|+.+++.+...+.... ..+..++.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 45777 88888999888887666665 89999999999999999999854321100 00222221
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
.+ |... ..+.++.+...+.. .++.-|++|||+|.+.. .+.|.|+..|++ +...+|.+|
T Consensus 85 ~~------~~~i---~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~--------~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 85 PD------GQSI---KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA--------SAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cc------cccC---CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH--------HHHHHHHHHhcCCCCCceEEEEe
Confidence 11 1110 12344455544432 23345899999988854 466799999985 456666666
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSIL 351 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~il 351 (900)
+... ..-|.+++|+..+.+..|+.++....+
T Consensus 148 ~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 148 ENKH-----QILPTILSRCQVVEFRPLPPESLIQRL 178 (329)
T ss_pred CChH-----hCcHHHHhhceeeeCCCCCHHHHHHHH
Confidence 4322 257899999999999988887765555
No 407
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.77 E-value=1e-07 Score=107.58 Aligned_cols=206 Identities=20% Similarity=0.310 Sum_probs=128.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc----ccc-cc-
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE----YME-QH- 631 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~----~~~-~~- 631 (900)
+..+|++++++++...++.+..|+... ++ .++|+||||+|||+||++|++.+..- ++..+..++ +.+ +.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~-~~--IL~LvGPpG~GKSsLa~~la~~le~~--~~Y~~kg~~~~sP~~e~PL~ 150 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEK-KQ--ILYLLGPVGGGKSSLAERLKSLMERV--PIYVLKANGERSPVNESPLG 150 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCC-Cc--eEEEecCCCCCchHHHHHHHHHHHhC--cceeecCCCCCCCCCCCCCC
Confidence 357899999999999999888888643 34 59999999999999999999988542 444432211 000 00
Q ss_pred ---------ccccccCCCCCCc-------------------------------------c----cccc------------
Q 046258 632 ---------SVSRLIGAPPGYV-------------------------------------G----HEEG------------ 649 (900)
Q Consensus 632 ---------~~~~l~G~~~g~~-------------------------------------g----~~~~------------ 649 (900)
.....+|-+..++ | .++.
T Consensus 151 L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vd 230 (644)
T PRK15455 151 LFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVD 230 (644)
T ss_pred CCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhcccee
Confidence 0011122211100 0 0000
Q ss_pred -c-------------chhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC-ceeecCCeEEEEccCCCcHH
Q 046258 650 -G-------------QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG-RTVDFRNTVIIMTSNLGAEH 714 (900)
Q Consensus 650 -~-------------~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g-~~~~~~~~~iI~tsn~~~~~ 714 (900)
+ .+.+.+..+..+++=|=|+-|++.+++.-||.+.++|.+.-..+ ..+++ +.+||+.||-.-
T Consensus 231 i~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~-D~vIiaHsNE~E-- 307 (644)
T PRK15455 231 IRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPF-DGIILAHSNESE-- 307 (644)
T ss_pred HHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceecc-ceeEEecCCHHH--
Confidence 0 01123333444567777999999999999999999999854333 34544 688999999521
Q ss_pred HhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCC-CCHHHHHHHHHHHHHHHHHHHHhcCC-ccccCHHHHH
Q 046258 715 LLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDP-LSHEQLRKVARLQMKDVAIRLAERGV-ALAVTDAALD 792 (900)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l~~~~~~~~~~~~-~~~~~~~a~~ 792 (900)
+ ..=.......+|++|+ .+|.++. |.-.+=.+|-++.+.. ..+ ...+.|.+++
T Consensus 308 ~-----------------~~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~~-------s~l~~~hiAPhtle 362 (644)
T PRK15455 308 W-----------------QTFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN-------SELAHAPCAPGTLE 362 (644)
T ss_pred H-----------------HHHhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHhcC-------ccccCCCcCccHHH
Confidence 1 1111456789999999 8888888 5555556676666652 111 2456666665
Q ss_pred HHHH
Q 046258 793 IVLA 796 (900)
Q Consensus 793 ~l~~ 796 (900)
.++.
T Consensus 363 ~aA~ 366 (644)
T PRK15455 363 MLAR 366 (644)
T ss_pred HHHH
Confidence 5543
No 408
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.77 E-value=8.7e-09 Score=93.66 Aligned_cols=65 Identities=29% Similarity=0.469 Sum_probs=56.9
Q ss_pred ccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC
Q 046258 549 VTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD 615 (900)
Q Consensus 549 ~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~ 615 (900)
...++.+..++|.||.-|++.|.++++..... ..|++|+ ++.|.||||||||.+++.||+.++.+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 34566778899999999999999999999766 4688996 78899999999999999999999874
No 409
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.77 E-value=5e-08 Score=113.52 Aligned_cols=219 Identities=16% Similarity=0.170 Sum_probs=135.0
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcc--cccccchhHHHHhCCCeEEE
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVG--HEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g--~~~~~~l~~~~~~~~~~vll 665 (900)
..|+||+|-||||||.|-+.+++.+.+ -++.+...-+.....+...-.+. .| +-++| ++--+.++|.+
T Consensus 319 DInILLvGDPgtaKSqlLk~v~~~aPr----~vytsgkgss~~GLTAav~rd~~--tge~~LeaG----ALVlAD~Gv~c 388 (682)
T COG1241 319 DIHILLVGDPGTAKSQLLKYVAKLAPR----GVYTSGKGSSAAGLTAAVVRDKV--TGEWVLEAG----ALVLADGGVCC 388 (682)
T ss_pred ceeEEEcCCCchhHHHHHHHHHhhCCc----eEEEccccccccCceeEEEEccC--CCeEEEeCC----EEEEecCCEEE
Confidence 468999999999999999999988854 12222211111000000010000 11 01222 33445679999
Q ss_pred EccccccCHHHHHHHHHHhhCCeeecCC-Cceee-cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHH
Q 046258 666 FDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVD-FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPE 743 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~-~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (900)
+||+|||+....++|.++|+..+++-.. |-..- ...|-+++++|+........ .+ ..+ .=.|+++
T Consensus 389 IDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~----~~---~~e------nI~l~~~ 455 (682)
T COG1241 389 IDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPK----KT---VAE------NINLPAP 455 (682)
T ss_pred EEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCC----CC---HHH------hcCCChh
Confidence 9999999999999999999998887655 42222 24677888888854221110 00 000 2358999
Q ss_pred HHhcccceeecCC-CCHHHHHHHHHHHHHHHH------------------------HH---HHhcCCccccCHHHHHHHH
Q 046258 744 LLNRLDEIVVFDP-LSHEQLRKVARLQMKDVA------------------------IR---LAERGVALAVTDAALDIVL 795 (900)
Q Consensus 744 ll~R~~~~i~f~p-l~~e~~~~I~~~~l~~~~------------------------~~---~~~~~~~~~~~~~a~~~l~ 795 (900)
|++|||.++.... ++++.=..|+.+.+.... ++ +.++.+...+++++.+.|.
T Consensus 456 lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~ 535 (682)
T COG1241 456 LLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELE 535 (682)
T ss_pred HHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHH
Confidence 9999998777766 777655666666555431 11 2344466899999999987
Q ss_pred HcCCC-C------------CCCchHHHHHHHHHHHHHHHHHHHcccCCC
Q 046258 796 AESYD-P------------IYGARPIRRWLEKKVVTELSRMLVREEIDE 831 (900)
Q Consensus 796 ~~~~~-~------------~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~ 831 (900)
++-.. + -.-+|+|+++|+ +..+.+++-++..+.+
T Consensus 536 ~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR--LaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 536 DYYVEMRKKSALVEEKRTIPITARQLESIIR--LAEAHAKMRLSDVVEE 582 (682)
T ss_pred HHHHHhhhccccccccCcccccHHHHHHHHH--HHHHHHhhhccCCCCH
Confidence 65111 0 123799999985 4556666666655544
No 410
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.77 E-value=5.7e-09 Score=103.96 Aligned_cols=122 Identities=22% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcE------------------EE
Q 046258 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVR------------------LI 239 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~------------------~~ 239 (900)
|.+++|++...+.+.-.... ..|+||+||||||||++|+.++..+..-...+.+.-.. |.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFR 79 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EE
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcc
Confidence 67899999888888665553 57999999999999999999998764322111111111 11
Q ss_pred EEec----hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------
Q 046258 240 ALDM----GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ------- 308 (900)
Q Consensus 240 ~~~~----~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~------- 308 (900)
.... .+++.|.. .-..+++..+++|+ ||+||+..+ +..+.+.|+..+++|.
T Consensus 80 ~phhs~s~~~liGgg~---------~~~PGeislAh~GV-LflDE~~ef--------~~~vld~Lr~ple~g~v~i~R~~ 141 (206)
T PF01078_consen 80 APHHSASEAALIGGGR---------PPRPGEISLAHRGV-LFLDELNEF--------DRSVLDALRQPLEDGEVTISRAG 141 (206)
T ss_dssp EE-TT--HHHHHEEGG---------GEEE-CGGGGTTSE-EEECETTTS---------HHHHHHHHHHHHHSBEEEEETT
T ss_pred cCCCCcCHHHHhCCCc---------CCCcCHHHHhcCCE-EEechhhhc--------CHHHHHHHHHHHHCCeEEEEECC
Confidence 1111 01111111 00112344566565 999999555 4456778999998774
Q ss_pred --------EEEEEecCHHH
Q 046258 309 --------LRCIGATTLEE 319 (900)
Q Consensus 309 --------irvI~att~~~ 319 (900)
+.+|+|+|+.+
T Consensus 142 ~~~~~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 142 GSVTYPARFLLVAAMNPCP 160 (206)
T ss_dssp EEEEEB--EEEEEEE-S--
T ss_pred ceEEEecccEEEEEecccc
Confidence 46788877543
No 411
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=6.4e-09 Score=105.31 Aligned_cols=152 Identities=18% Similarity=0.315 Sum_probs=101.2
Q ss_pred CCCchHHHHHHHHHHcc---CCCCCeEEEcCCCCcHHHHHHHHHHHH-hcCCCCCCCCCcEEEEEechhh--------hh
Q 046258 181 VIGRDEEIRRVVRILSR---RTKNNPVLIGEPGVGKTAVVEGLAQRI-VRGDVPSNLADVRLIALDMGAL--------VA 248 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l-~~~~~p~~l~~~~~~~~~~~~l--------~~ 248 (900)
+--+.+..+++++++.| ++..++||.||+|.||+.+|+-|...- .+-+. ..+|+++||+.+ ++
T Consensus 186 iatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~-----sg~fvevncatlrgd~amsalf 260 (531)
T COG4650 186 IATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQF-----SGAFVEVNCATLRGDTAMSALF 260 (531)
T ss_pred ccccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhc-----CCceEEEeeeeecCchHHHHHH
Confidence 55678888888888876 788899999999999999999887532 11111 344999999876 34
Q ss_pred cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEec
Q 046258 249 GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGAT 315 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~at 315 (900)
|+- +|.|++.-..--+.+..+++|. ||+|||..|-.+.|. +|+..++.. .+.+|+.|
T Consensus 261 ghv-kgaftga~~~r~gllrsadggm-lfldeigelgadeqa--------mllkaieekrf~pfgsdr~v~sdfqliagt 330 (531)
T COG4650 261 GHV-KGAFTGARESREGLLRSADGGM-LFLDEIGELGADEQA--------MLLKAIEEKRFYPFGSDRQVSSDFQLIAGT 330 (531)
T ss_pred hhh-ccccccchhhhhhhhccCCCce-EehHhhhhcCccHHH--------HHHHHHHhhccCCCCCccccccchHHhhhh
Confidence 543 6777776666666677777665 999999887554444 666665532 34555555
Q ss_pred CHHHHHHHhhccHH----HHcccceeeecCCChHHHHH
Q 046258 316 TLEEYRKYVEKDAA----FERRFQQVYVAEPSVPDTVS 349 (900)
Q Consensus 316 t~~~~~~~~~~d~a----l~~Rf~~i~i~~P~~~e~~~ 349 (900)
-++- ...+. .+. |..|+...++..|...++.+
T Consensus 331 vrdl-rq~va-eg~fredl~arinlwtf~lpgl~qr~e 366 (531)
T COG4650 331 VRDL-RQLVA-EGKFREDLYARINLWTFTLPGLRQRQE 366 (531)
T ss_pred HHHH-HHHHh-ccchHHHHHHhhheeeeeccccccCcc
Confidence 4433 22222 222 33366667777787666555
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.77 E-value=5e-07 Score=97.10 Aligned_cols=197 Identities=16% Similarity=0.195 Sum_probs=108.0
Q ss_pred HHHHHHHHHHc---cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEE-Eec----hhh----h--hccc
Q 046258 186 EEIRRVVRILS---RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIA-LDM----GAL----V--AGAK 251 (900)
Q Consensus 186 ~~i~~l~~~l~---~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~-~~~----~~l----~--~g~~ 251 (900)
...++++..+. +.....++|+||+|+|||++++.++..+..+.+ .+.. +++ ..+ . .|..
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERV-------VAAKLVNTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-------EEeeeeCCCCCHHHHHHHHHHHcCCC
Confidence 33444444333 233446899999999999999999988743221 1111 111 111 0 1222
Q ss_pred ccch----HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-cC-cEEEEEecCHHHHHHHhh
Q 046258 252 YRGE----FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-RG-QLRCIGATTLEEYRKYVE 325 (900)
Q Consensus 252 ~~g~----~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-~g-~irvI~att~~~~~~~~~ 325 (900)
..+. ....+...+......+...+|+|||+|.+... ..+....|..... .+ .+.++.++++.- .....
T Consensus 99 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~-----~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~ 172 (269)
T TIGR03015 99 TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPE-----LLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQ 172 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHH-----HHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHc
Confidence 1221 11222222222223455678999999987532 1222222222221 12 345555555432 22222
Q ss_pred c--cHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 326 K--DAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 326 ~--d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
. ...+.+|+.. +.++..+.++..+++..............++++++..+...+.++ |.....+++.+...
T Consensus 173 ~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 173 SPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLLS 245 (269)
T ss_pred CchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Confidence 1 2356777653 667777888888888877766543334568999999999999554 54666666665443
No 413
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.76 E-value=6.4e-09 Score=103.50 Aligned_cols=106 Identities=23% Similarity=0.369 Sum_probs=70.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+||||||||+||.++++.+...+.+...++++++.+....+. + ......+...+. ...+|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~--~-------~~~~~~~~~~l~--~~dlLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR--S-------DGSYEELLKRLK--RVDLLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH--C-------CTTHCHHHHHHH--TSSCEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc--c-------ccchhhhcCccc--cccEeccccc
Confidence 7999999999999999999998887778888888887654432111 0 001122333333 3479999999
Q ss_pred ccc--CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 670 EKA--HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 670 dk~--~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
... .....+.|+++++... .+--.|+|||..++.+.+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEE 156 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhh
Confidence 765 4556788899998521 122477799999877754
No 414
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.75 E-value=4.7e-08 Score=114.82 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=78.7
Q ss_pred HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-----------------------cEEEEEecCHHHHHHHhh
Q 046258 269 EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-----------------------QLRCIGATTLEEYRKYVE 325 (900)
Q Consensus 269 ~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~irvI~att~~~~~~~~~ 325 (900)
.+++|+ |||||++.|.+..|. .|+++|+.+ .+++|+++++.... .
T Consensus 224 kAnGGt-L~LDei~~L~~~~q~--------~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~---~ 291 (637)
T PRK13765 224 KAHKGV-LFIDEINTLDLESQQ--------SLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALE---N 291 (637)
T ss_pred ECCCcE-EEEeChHhCCHHHHH--------HHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHH---h
Confidence 345566 999999988654443 777777533 35899999876543 3
Q ss_pred ccHHHHcccce----eeecC--C-ChHHHHHHHHHHHHHHhcccC-cccChhHHHHHHHHhhhhccCCC---C-hhhHHH
Q 046258 326 KDAAFERRFQQ----VYVAE--P-SVPDTVSILRGLKEKYEGHHG-VRIQDRALVVAAQLSARYITGRH---L-PDKAID 393 (900)
Q Consensus 326 ~d~al~~Rf~~----i~i~~--P-~~~e~~~ilr~l~~~~~~~~~-v~i~~eal~~l~~~s~~~~~~~~---~-p~~a~~ 393 (900)
.+|.|..||.. +.+.. + +.+.+..+++.+.+.+..... ..++++++..+...+.|....|. + .....+
T Consensus 292 ~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~ 371 (637)
T PRK13765 292 MHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGG 371 (637)
T ss_pred hhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHH
Confidence 48999999862 44321 2 344455566655555544322 35899999999998888776654 2 345566
Q ss_pred HHHHHHHHhh
Q 046258 394 LVDEACANVR 403 (900)
Q Consensus 394 Lld~a~a~~~ 403 (900)
|+.++....+
T Consensus 372 l~r~a~~~a~ 381 (637)
T PRK13765 372 LVRVAGDIAR 381 (637)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 415
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=3.6e-08 Score=94.08 Aligned_cols=118 Identities=25% Similarity=0.264 Sum_probs=68.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccc---cc-CCCCCCcccccccchhHHHHhCCCeEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR---LI-GAPPGYVGHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~---l~-G~~~g~~g~~~~~~l~~~~~~~~~~vll 665 (900)
+++|+||||||||++++.++..+......++.++++.......... .. .......+......+...++..+..|++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999977544688888887544322110 00 0001111111112233344444459999
Q ss_pred EccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 666 FDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
+||++.+.............. ...........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999987766554432100 000000012356778888884
No 416
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.75 E-value=2.7e-07 Score=98.60 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=60.3
Q ss_pred eEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-cEEEEEecCHHH-------HHHHhhccHHHHcccceeeecCCChH
Q 046258 274 VILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-QLRCIGATTLEE-------YRKYVEKDAAFERRFQQVYVAEPSVP 345 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~irvI~att~~~-------~~~~~~~d~al~~Rf~~i~i~~P~~~ 345 (900)
.||||||+|.|. .+....|.++++.. ...+|.+||+.. +..-.-.+.-|..|+-.|...+++.+
T Consensus 280 GVLFIDEvHmLD--------iEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ 351 (398)
T PF06068_consen 280 GVLFIDEVHMLD--------IECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEE 351 (398)
T ss_dssp -EEEEESGGGSB--------HHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HH
T ss_pred ceEEecchhhcc--------HHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHH
Confidence 379999999983 45667888888854 456677776532 11111234578899988888888999
Q ss_pred HHHHHHHHHHHHHhcccCcccChhHHHHHHHHhh
Q 046258 346 DTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSA 379 (900)
Q Consensus 346 e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~ 379 (900)
|...|++.-++. .++.++++++..+..+..
T Consensus 352 ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 352 EIKQILKIRAKE----EDVEISEDALDLLTKIGV 381 (398)
T ss_dssp HHHHHHHHHHHH----CT--B-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----hcCcCCHHHHHHHHHHhh
Confidence 999999776665 688999999999887763
No 417
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-07 Score=96.13 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=69.5
Q ss_pred eEEEEcchhhhhhCCCCCCh----hhHHHhHhhhhhc------------CcEEEEEecCHHHHHHHhhccHHHHcccce-
Q 046258 274 VILFIDEIHLVLGAGRTEGS----MDAANLFKPMLAR------------GQLRCIGATTLEEYRKYVEKDAAFERRFQQ- 336 (900)
Q Consensus 274 ~iL~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~~------------g~irvI~att~~~~~~~~~~d~al~~Rf~~- 336 (900)
.|+||||||.+...+.+++. ..+..-|+|+++. ..+-+|+++...- .+--.+-|.|..||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfPIR 330 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFPIR 330 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCceE
Confidence 36999999999987654331 1234567777763 2467888874211 1111356899999986
Q ss_pred eeecCCChHHHHHHH----HHHHHHHhcc---cC--cccChhHHHHHHHHh
Q 046258 337 VYVAEPSVPDTVSIL----RGLKEKYEGH---HG--VRIQDRALVVAAQLS 378 (900)
Q Consensus 337 i~i~~P~~~e~~~il----r~l~~~~~~~---~~--v~i~~eal~~l~~~s 378 (900)
+++...+.++...|| ..+.++|... .+ +.++++++..++.++
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 788888888888888 3466666543 23 447888888888776
No 418
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.73 E-value=2.1e-07 Score=117.25 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=92.3
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc--------cc-ccccCCC---CCCcccccccchhHHHHh
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH--------SV-SRLIGAP---PGYVGHEEGGQLTEAVRR 658 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~--------~~-~~l~G~~---~g~~g~~~~~~l~~~~~~ 658 (900)
. ++|++|+|||++...++..+.+ ..+.+++.+..+.. .. +.++... .+.+... .+.|..+.+
T Consensus 719 ~-~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~-dglLi~a~~- 792 (1856)
T KOG1808|consen 719 V-LVGLTGCGDTTVCQILAEKSGV---ALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWS-DGLLIGAQG- 792 (1856)
T ss_pred h-hcccccccchhhhhhhhhcccc---eeeeehhhhhhhhccccccccccchhhHhhhhhhhhcccccc-Cccchhhhh-
Confidence 5 9999999999999999988855 66666665543200 00 1111111 1111111 133433333
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHhhCC-ee--ecC----CCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHH
Q 046258 659 RPYSVVLFDEVEKAHISVFNTLLQVLDDG-RL--TDG----QGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ 731 (900)
Q Consensus 659 ~~~~vlllDEidk~~~~~~~~Ll~~ld~g-~~--~d~----~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~ 731 (900)
.+.-++.|||..+..++...+..+|+.- .+ ++. .....-..+.-++.|.|+|.+..
T Consensus 793 -~G~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~~~atmnpGgd~g---------------- 855 (1856)
T KOG1808|consen 793 -VGKQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEETVIAEEGFQLVATMNPGGDYG---------------- 855 (1856)
T ss_pred -ccchhhhhccccchhhHHHHHHHHhCcccccccccccccchhceeecccchhhhccCCccccc----------------
Confidence 3456899999999999999998888732 22 221 11222334567899999986544
Q ss_pred HHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 732 VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 732 ~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
++.++|++++||..++.-...+..++..++..
T Consensus 856 -----kkEls~AlrNrfte~~~~~~~d~~~l~~l~~g 887 (1856)
T KOG1808|consen 856 -----KKELSPALRNRFTEVILQSLVDTGELLILVDG 887 (1856)
T ss_pred -----eeecChhhhhceeEEEEeccCCccchhhhhcc
Confidence 56789999999955554444777777544443
No 419
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=7e-08 Score=113.81 Aligned_cols=183 Identities=19% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh---hhhcccccchHHHHHHH-----HHHHHHHc
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA---LVAGAKYRGEFEERLKA-----VLKEVEEA 270 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~---l~~g~~~~g~~~~~l~~-----~~~~~~~~ 270 (900)
.-.+|||.|+||||||++|++||..+.. .. +|+.+.++. .+.|.. .++..+.. .-+.+..+
T Consensus 15 ~~g~vLl~G~~GtgKs~lar~l~~~~~~-~~-------pfv~i~~~~t~d~L~G~i---dl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 15 SLGGVAIRARAGTGKTALARALAEILPP-IM-------PFVELPLGVTEDRLIGGI---DVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred CcceEEEEcCCCcHHHHHHHHHHHhCCc-CC-------CeEecCcccchhhcccch---hhhhhhhcCcccCCCCCeeeC
Confidence 3568999999999999999999998733 12 377776421 122211 00110100 00112234
Q ss_pred CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc---------------EEEEEecCHHHHHHHhhccHHHHcccc
Q 046258 271 EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ---------------LRCIGATTLEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 271 ~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~---------------irvI~att~~~~~~~~~~d~al~~Rf~ 335 (900)
++|+ ||||||+.+.+..|. .|..+|+.|. +++|++++..+... ...+.|..||.
T Consensus 84 ~~Gv-L~lDEi~rl~~~~q~--------~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~ 152 (589)
T TIGR02031 84 PRGV-LYVDMANLLDDGLSN--------RLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLA 152 (589)
T ss_pred CCCc-EeccchhhCCHHHHH--------HHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhcc
Confidence 5454 999999999776555 8888887653 68888877764211 36788999998
Q ss_pred e-eee-cCCChHHHHHHHHHHHHHHhc-------------------ccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 336 Q-VYV-AEPSVPDTVSILRGLKEKYEG-------------------HHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 336 ~-i~i-~~P~~~e~~~ilr~l~~~~~~-------------------~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
. +.+ ..|+..++.+|++.....+.. ...+.++++++.+++.+...+-.. -+...+.+
T Consensus 153 l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~--s~Ra~i~~ 230 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS--GHRADLFA 230 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC--CccHHHHH
Confidence 6 454 456778888888765533321 123456666666666665332111 13344555
Q ss_pred HHHHHHHhhhh
Q 046258 395 VDEACANVRVQ 405 (900)
Q Consensus 395 ld~a~a~~~~~ 405 (900)
+..+-+...+.
T Consensus 231 ~r~ArA~Aal~ 241 (589)
T TIGR02031 231 VRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHh
Confidence 55554444443
No 420
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.8e-07 Score=99.39 Aligned_cols=156 Identities=18% Similarity=0.279 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC----ceeEe-ccccccc-cccccc
Q 046258 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN----LLVRI-DMSEYME-QHSVSR 635 (900)
Q Consensus 562 g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~----~~i~i-~~~~~~~-~~~~~~ 635 (900)
.|+.+++.+..++... +....+||+|| +||+++|+.+|+.+.+.+. ++-.+ +|..+.. .|.--.
T Consensus 6 ~q~~~~~~L~~~~~~~--------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQD--------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcC--------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 3556677777777554 22346899996 6899999999999987432 11110 1111110 000000
Q ss_pred ccCCCCC-CcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 636 LIGAPPG-YVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 636 l~G~~~g-~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
.+. |.| .++.+..+.+...+.. .++.|++||++|+++....|.||+.||+ ...+++||++|+.
T Consensus 76 ~i~-p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~ 143 (290)
T PRK07276 76 VIE-PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTND 143 (290)
T ss_pred eec-CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECC
Confidence 111 111 1122222223333332 3468999999999999999999999998 4567888888876
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR 767 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~ 767 (900)
...+.|.+.+|| .++.|++ +.+++.+++.
T Consensus 144 --------------------------~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 144 --------------------------ENKVLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --------------------------hhhCchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 356889999999 9999977 6776666554
No 421
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=1.2e-07 Score=99.21 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=66.6
Q ss_pred CeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-cEEEEEecCHHHH-------HHHhhccHHHHcccceeeecCCCh
Q 046258 273 KVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-QLRCIGATTLEEY-------RKYVEKDAAFERRFQQVYVAEPSV 344 (900)
Q Consensus 273 ~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~irvI~att~~~~-------~~~~~~d~al~~Rf~~i~i~~P~~ 344 (900)
|.||||||+|.| +.+.+..|.++|+.. -..+|.+||+.-. ..-.-+..-|..|+-.|...+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 346999999998 345666888888754 3456666665321 111124567888888777777788
Q ss_pred HHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 345 PDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 345 ~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
+|..+|++.-+.. .++.+++++++.+..+.
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig 393 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIG 393 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhc
Confidence 9999998765544 57889999999998875
No 422
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.1e-07 Score=103.39 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=104.6
Q ss_pred CCCCCCCchHHHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCC--------CCCCcEEEEEechhhh
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPS--------NLADVRLIALDMGALV 247 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~--------~l~~~~~~~~~~~~l~ 247 (900)
.|++++|++..++.+...+.+.. +...||+||+|+||+++|.++|+.+...+... ....-.++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 36779999999999999998754 46689999999999999999999985443110 0001112322221111
Q ss_pred hcccc-------cc-------h-HHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-c
Q 046258 248 AGAKY-------RG-------E-FEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-Q 308 (900)
Q Consensus 248 ~g~~~-------~g-------~-~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~ 308 (900)
.|... .| . ..+.++.+...+... ++.-|++||++|.|.. .++|.|+..|+.. .
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------AAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--------HHHHHHHHHHhCCCC
Confidence 11100 00 0 012344554444422 3456899999988843 4667888888743 3
Q ss_pred EEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHH
Q 046258 309 LRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRG 353 (900)
Q Consensus 309 irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~ 353 (900)
..+|..++..+ ..-|.+++|++.+.+..++.++...+|..
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKR 193 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHH
Confidence 34454554332 26789999999999999988887777754
No 423
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=7.1e-07 Score=101.63 Aligned_cols=153 Identities=24% Similarity=0.334 Sum_probs=99.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh-------CCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-------RPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~ 662 (900)
.+||+||||-|||+||+.||+.. +..++.||.|+-...+.+. ..+..++.. ....
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~---------------~kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVK---------------EKIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHH---------------HHHHHHHhhccccccCCCcc
Confidence 47899999999999999999998 4589999998743322221 112222221 2235
Q ss_pred EEEEccccccCHHHHHHHHHHhhC-Ce-eecCCCcee---------ecCCeEEEEccCCCcHHHhcccCCccchHHHHHH
Q 046258 663 VVLFDEVEKAHISVFNTLLQVLDD-GR-LTDGQGRTV---------DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ 731 (900)
Q Consensus 663 vlllDEidk~~~~~~~~Ll~~ld~-g~-~~d~~g~~~---------~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~ 731 (900)
.|++||||-+++.+.+.|+.++.. +. .+-..+... -+.+ =||+.+|-
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNd--------------------- 447 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICND--------------------- 447 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecC---------------------
Confidence 688999999999999999999972 11 111111000 0112 25666764
Q ss_pred HHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcC
Q 046258 732 VLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAES 798 (900)
Q Consensus 732 ~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 798 (900)
.+-|+|. .-+..++.|.|.+..-+.+-++..+. .+ .+.++..++..|+++.
T Consensus 448 -------LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~-------rE--~mr~d~~aL~~L~el~ 500 (877)
T KOG1969|consen 448 -------LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH-------RE--NMRADSKALNALCELT 500 (877)
T ss_pred -------ccchhhhhcccceEEEEecCCChhHHHHHHHHHHh-------hh--cCCCCHHHHHHHHHHh
Confidence 2456665 34558999999999877643333333 34 3578899999999863
No 424
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=102.84 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFID 279 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 279 (900)
++.-||+||||||||+++.++|..+ +..++-+++++.... .+ ++.++. ...+..||+|.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~n------~d--Lr~LL~---~t~~kSIivIE 293 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKLD------SD--LRHLLL---ATPNKSILLIE 293 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccCc------HH--HHHHHH---hCCCCcEEEEe
Confidence 4568999999999999999999999 788999888765431 11 555543 34557899999
Q ss_pred chhhhhhCCC---C--CChh-----hHHHhHhhhhh-----cC-cEEEEEecCHHHHHHHhhccHHHHc--ccce-eeec
Q 046258 280 EIHLVLGAGR---T--EGSM-----DAANLFKPMLA-----RG-QLRCIGATTLEEYRKYVEKDAAFER--RFQQ-VYVA 340 (900)
Q Consensus 280 Ei~~l~~~~~---~--~~~~-----~~~~~L~~~l~-----~g-~irvI~att~~~~~~~~~~d~al~~--Rf~~-i~i~ 340 (900)
+||+-+.... . .+.. -...-|+.++. .| +-.+|.|||..+- +||||.| |++. |++.
T Consensus 294 DIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek-----LDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 294 DIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK-----LDPALLRPGRMDMHIYMG 368 (457)
T ss_pred ecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh-----cCHhhcCCCcceeEEEcC
Confidence 9997643211 1 0111 11223444443 23 3455666676663 8999999 8886 7776
Q ss_pred CCChHH
Q 046258 341 EPSVPD 346 (900)
Q Consensus 341 ~P~~~e 346 (900)
.-+...
T Consensus 369 yCtf~~ 374 (457)
T KOG0743|consen 369 YCTFEA 374 (457)
T ss_pred CCCHHH
Confidence 655543
No 425
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.68 E-value=1.5e-08 Score=111.25 Aligned_cols=215 Identities=14% Similarity=0.145 Sum_probs=112.7
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
..|+||+|.||||||.|.+.+++...+ -++.+....+.....+...-. +. + .+...-.+++-.+.++|.++|
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr----~v~~~g~~~s~~gLta~~~~d-~~--~-~~~~leaGalvlad~GiccID 128 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPR----SVYTSGKGSSAAGLTASVSRD-PV--T-GEWVLEAGALVLADGGICCID 128 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SS----EEEEECCGSTCCCCCEEECCC-GG--T-SSECEEE-HHHHCTTSEEEEC
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCc----eEEECCCCcccCCccceeccc-cc--c-ceeEEeCCchhcccCceeeec
Confidence 458999999999999999988766532 344443332211111111000 00 0 001112346666788999999
Q ss_pred cccccCHHHHHHHHHHhhCCeeecCC-Cceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
|+|+++.+....|+++|+.++++-.. |....+ .++-|++++|+............+ .-.++++|+
T Consensus 129 e~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~-------------ni~l~~~LL 195 (331)
T PF00493_consen 129 EFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSE-------------NINLPPPLL 195 (331)
T ss_dssp TTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGC-------------CT-S-CCCH
T ss_pred ccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHH-------------hcccchhhH
Confidence 99999999999999999999988655 433333 478899999985432211000000 124789999
Q ss_pred hcccceeec-CCCCHHHHHHHHHHHHHHHHHH-------------------------HHhcCCccccCHHHHHHHHHcCC
Q 046258 746 NRLDEIVVF-DPLSHEQLRKVARLQMKDVAIR-------------------------LAERGVALAVTDAALDIVLAESY 799 (900)
Q Consensus 746 ~R~~~~i~f-~pl~~e~~~~I~~~~l~~~~~~-------------------------~~~~~~~~~~~~~a~~~l~~~~~ 799 (900)
+|||.++.+ .+.+++.=..|+++.+...... +.++.+...+++++.+.|..+..
T Consensus 196 SRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv 275 (331)
T PF00493_consen 196 SRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYV 275 (331)
T ss_dssp CC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHC
T ss_pred hhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence 999987665 4477655555666544322111 11223567889999888876511
Q ss_pred -----------CCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 800 -----------DPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 800 -----------~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
.-...+|.|+.+|+ +..+.++.-+
T Consensus 276 ~lR~~~~~~~~~~~iT~R~LeSLIR--LseA~AKl~l 310 (331)
T PF00493_consen 276 ELRKESKSNNKSIPITIRQLESLIR--LSEAHAKLRL 310 (331)
T ss_dssp CCCHCHHCHSS-B-SSCCCCCHHHH--HHHHHHHCTT
T ss_pred HhcccccccccccccchhhHHHHHH--HHHHHHHHhc
Confidence 11234677777773 3344444333
No 426
>PRK08181 transposase; Validated
Probab=98.67 E-value=2.7e-08 Score=105.06 Aligned_cols=105 Identities=21% Similarity=0.385 Sum_probs=72.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh-CCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDE 668 (900)
+++|+||||||||+||.+++..+...+..++.+++.++......+. .. +.+...+.. ....+|+|||
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~-----------~~-~~~~~~l~~l~~~dLLIIDD 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR-----------RE-LQLESAIAKLDKFDLLILDD 175 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH-----------hC-CcHHHHHHHHhcCCEEEEec
Confidence 6999999999999999999998876667788888776554322110 00 112222222 2457999999
Q ss_pred ccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 669 VEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 669 idk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
++..+. ..+..|+++++. ++ .+.-+|+|||.++..+..
T Consensus 176 lg~~~~~~~~~~~Lf~lin~-R~----------~~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISA-RY----------ERRSILITANQPFGEWNR 215 (269)
T ss_pred cccccCCHHHHHHHHHHHHH-HH----------hCCCEEEEcCCCHHHHHH
Confidence 987644 456789999984 21 123489999999877653
No 427
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.1e-07 Score=98.24 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=88.1
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc-----cccccc--cCCCCCCcccccccchhHHHHh---
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ-----HSVSRL--IGAPPGYVGHEEGGQLTEAVRR--- 658 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-----~~~~~l--~G~~~g~~g~~~~~~l~~~~~~--- 658 (900)
..+||+||+|+||..+|.++|+.+.+.... -.|+....- ....++ +......++.++.+.+.+.+..
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 369999999999999999999999874422 123321110 000111 1111112333333334443332
Q ss_pred --CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHH
Q 046258 659 --RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV 736 (900)
Q Consensus 659 --~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (900)
.++.|++++++|+++....|+||+.||+ ...+++||++|+.
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~-------------------------- 127 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRN-------------------------- 127 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECC--------------------------
Confidence 2468999999999999999999999998 5678999998886
Q ss_pred HhcccHHHHhcccceeecCCCC
Q 046258 737 RKHFRPELLNRLDEIVVFDPLS 758 (900)
Q Consensus 737 ~~~~~~~ll~R~~~~i~f~pl~ 758 (900)
...+.|-+++|| ..+.|+++.
T Consensus 128 ~~~lLpTI~SRC-q~~~~~~~~ 148 (261)
T PRK05818 128 ENNILNTILSRC-VQYVVLSKE 148 (261)
T ss_pred hHhCchHhhhhe-eeeecCChh
Confidence 466889999999 778888873
No 428
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66 E-value=6.5e-07 Score=89.19 Aligned_cols=179 Identities=23% Similarity=0.340 Sum_probs=121.7
Q ss_pred hHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc
Q 046258 555 NEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 555 ~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 634 (900)
-....|+|.+..-+.+.+.-.+...|+ |-.++||+|.-||||++|.|++...+......+|.++-.++..-
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L---- 127 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL---- 127 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC-----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH----
Confidence 345668888888888888888776654 44579999999999999999999999887777888877664321
Q ss_pred cccCCCCCCcccccccchhHHHHhCCCe-EEEEccccc-cCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCc
Q 046258 635 RLIGAPPGYVGHEEGGQLTEAVRRRPYS-VVLFDEVEK-AHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGA 712 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~~~l~~~~~~~~~~-vlllDEidk-~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~ 712 (900)
..+.+.++..|.. |||+|+.-- -+.+....|-.+||.|- .-...||+|-+|||...
T Consensus 128 ---------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRH 185 (287)
T COG2607 128 ---------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCCcc
Confidence 2355666666554 577777642 23456778888888532 22457999999999742
Q ss_pred ---HHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 713 ---EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 713 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+.+.+.. +....-... +.+.+.+ .|-+||.--+.|.|.++++...|+..+.+
T Consensus 186 Ll~e~~~dn~-~~~~eih~~----eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 186 LLPEDMKDNE-GSTGEIHPS----EAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred cccHhhhhCC-CcccccChh----HHHHHhh--chhhhcceeecccCCCHHHHHHHHHHHHH
Confidence 1111100 000000001 1122222 35689999999999999999999999987
No 429
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=5.1e-08 Score=111.90 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCC------------------CCCCcEE
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPS------------------NLADVRL 238 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~------------------~l~~~~~ 238 (900)
.|.+++|++..++.+.-.+. ...|++|+||||||||++++.++..+....... .....+|
T Consensus 190 d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 45668999888776654443 457899999999999999999997652211000 0112334
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-----------
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG----------- 307 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g----------- 307 (900)
...+++....+. .-|. .....+.+..+++|+ |||||++.+.+. ..+.|.+.|+.+
T Consensus 268 ~~p~~s~s~~~~-~ggg----~~~~pG~i~lA~~Gv-LfLDEi~e~~~~--------~~~~L~~~LE~~~v~i~r~g~~~ 333 (499)
T TIGR00368 268 RSPHHSASKPAL-VGGG----PIPLPGEISLAHNGV-LFLDELPEFKRS--------VLDALREPIEDGSISISRASAKI 333 (499)
T ss_pred cccccccchhhh-hCCc----cccchhhhhccCCCe-EecCChhhCCHH--------HHHHHHHHHHcCcEEEEecCcce
Confidence 443333211100 0000 011223445566565 999999887654 344888887655
Q ss_pred ----cEEEEEecCHHH-----------------HHHH-hhccHHHHcccce-eeecCCC
Q 046258 308 ----QLRCIGATTLEE-----------------YRKY-VEKDAAFERRFQQ-VYVAEPS 343 (900)
Q Consensus 308 ----~irvI~att~~~-----------------~~~~-~~~d~al~~Rf~~-i~i~~P~ 343 (900)
.+++|+++|+.+ ..+| ....+.|.+||+. +.++.++
T Consensus 334 ~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~ 392 (499)
T TIGR00368 334 FYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLP 392 (499)
T ss_pred eccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCC
Confidence 368999987532 1111 2467889999996 5555443
No 430
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.65 E-value=2.8e-07 Score=95.31 Aligned_cols=132 Identities=26% Similarity=0.318 Sum_probs=79.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
.-.+.||+|||||++.+.+|+.+++ .++.++|++-.+-..+++ .+.++.. -+++++|||+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~---~~~vfnc~~~~~~~~l~r---------------il~G~~~--~GaW~cfdef 93 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGR---FVVVFNCSEQMDYQSLSR---------------ILKGLAQ--SGAWLCFDEF 93 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT-----EEEEETTSSS-HHHHHH---------------HHHHHHH--HT-EEEEETC
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCC---eEEEecccccccHHHHHH---------------HHHHHhh--cCchhhhhhh
Confidence 3568999999999999999999966 999999998655444332 3334444 3789999999
Q ss_pred cccCHHHHHHHHHHhh-------CC--eeecCCCceeecC-CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhc
Q 046258 670 EKAHISVFNTLLQVLD-------DG--RLTDGQGRTVDFR-NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKH 739 (900)
Q Consensus 670 dk~~~~~~~~Ll~~ld-------~g--~~~d~~g~~~~~~-~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (900)
++++.+++..+.+.+. ++ ++.- .|..+... ++-+.+|.|.+... ...
T Consensus 94 nrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~g----------------------r~~ 150 (231)
T PF12774_consen 94 NRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAG----------------------RSE 150 (231)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCC----------------------C--
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCC----------------------ccc
Confidence 9999998877655554 22 2221 24444443 55666788865310 345
Q ss_pred ccHHHHhcccceeecCCCCHHHHHHH
Q 046258 740 FRPELLNRLDEIVVFDPLSHEQLRKV 765 (900)
Q Consensus 740 ~~~~ll~R~~~~i~f~pl~~e~~~~I 765 (900)
+|+.|..-| ..|.+..++...+.++
T Consensus 151 LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 151 LPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred CCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 788887777 6666666665554443
No 431
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.65 E-value=6.9e-08 Score=100.48 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=70.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+|+||||||+||.+|+..+...+..++.++++++......+ +.. . ...+ ..+...+. ...+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-~---~~~~-~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-S---ETSE-EQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-c---cccH-HHHHHHhc--cCCEEEEeCC
Confidence 699999999999999999999997767788888877654321100 000 0 0000 11222222 4679999999
Q ss_pred cccCHH--HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 670 EKAHIS--VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 670 dk~~~~--~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
+..... ....|.++++. ++. .+.-.|+|||..++.+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~-Ry~---------~~~~tiitSNl~~~~l 209 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDR-RSS---------SKRPTGMLTNSNMEEM 209 (244)
T ss_pred CCCCCCHHHHHHHHHHHHH-HHh---------CCCCEEEeCCCCHHHH
Confidence 876433 45678888885 221 2345899999987665
No 432
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.63 E-value=5.1e-07 Score=102.71 Aligned_cols=150 Identities=21% Similarity=0.351 Sum_probs=96.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHH--HHH-cCCCeE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKE--VEE-AEGKVI 275 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~--~~~-~~~~~i 275 (900)
.+.=+||+||||-||||+|+.||+.. |+.++++|.++--.+. .+.+++..++.. +.. -..|+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----------GYsVvEINASDeRt~~----~v~~kI~~avq~~s~l~adsrP~C 390 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----------GYSVVEINASDERTAP----MVKEKIENAVQNHSVLDADSRPVC 390 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----------CceEEEecccccccHH----HHHHHHHHHHhhccccccCCCcce
Confidence 33347899999999999999999998 8999999988754432 233333333221 111 134667
Q ss_pred EEEcchhhhhhCCCCCChhhHHHhHhhhhh-------------------------cCcEEEEEecCHHHHHHHhhccHHH
Q 046258 276 LFIDEIHLVLGAGRTEGSMDAANLFKPMLA-------------------------RGQLRCIGATTLEEYRKYVEKDAAF 330 (900)
Q Consensus 276 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------------------------~g~irvI~att~~~~~~~~~~d~al 330 (900)
|+|||||- +...+.+.|+.++. ...|.||+.- .| -|+|
T Consensus 391 LViDEIDG--------a~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LY------aPaL 453 (877)
T KOG1969|consen 391 LVIDEIDG--------APRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LY------APAL 453 (877)
T ss_pred EEEecccC--------CcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---cc------chhh
Confidence 99999953 22334445554442 0123444432 11 3566
Q ss_pred Hc--cc-ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc
Q 046258 331 ER--RF-QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT 383 (900)
Q Consensus 331 ~~--Rf-~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~ 383 (900)
+. -| ..|.+..|+..-..+-|+.++.+ .++..+..++..+..++...+.
T Consensus 454 R~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 454 RPLRPFAEIIAFVPPSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred hhcccceEEEEecCCChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchHH
Confidence 54 23 34667777777777777777776 6788899999999998876665
No 433
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.1e-07 Score=100.28 Aligned_cols=106 Identities=24% Similarity=0.374 Sum_probs=72.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDE 668 (900)
+++|+||||||||+||-+|+..+...+.++..+...++..... .. +..+..-....+ -....||+|||
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk-----~~------~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK-----AA------FDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH-----HH------HhcCchHHHHHHHhhcCCEEEEec
Confidence 7999999999999999999999986677888888877654322 11 011111122233 23567999999
Q ss_pred cccc--CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 669 VEKA--HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 669 idk~--~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
+... ++...+.|++++.... -+... |+|||.+.+.+..
T Consensus 176 lG~~~~~~~~~~~~~q~I~~r~----------~~~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 176 IGYEPFSQEEADLLFQLISRRY----------ESRSL-IITSNLSFGEWDE 215 (254)
T ss_pred ccCccCCHHHHHHHHHHHHHHH----------hhccc-eeecCCChHHHHh
Confidence 9874 4556778888887422 12223 9999998776643
No 434
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.60 E-value=4.5e-07 Score=98.21 Aligned_cols=50 Identities=30% Similarity=0.441 Sum_probs=41.0
Q ss_pred CCC-CCCCchHHHHHHHHHHcc-----C-CCCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 177 KLD-PVIGRDEEIRRVVRILSR-----R-TKNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 177 ~~~-~~iG~~~~i~~l~~~l~~-----~-~~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
-|+ .++|.++.+.++++.+.. . .+.-++|+||||+||||+|++|++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344 799999999999998864 1 2344799999999999999999998844
No 435
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.3e-06 Score=95.44 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=85.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCC---------------CcEEEEEechhhhhcccccchHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA---------------DVRLIALDMGALVAGAKYRGEFEERLKAVL 264 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~---------------~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~ 264 (900)
....||+||+|+|||++|+.+|+.+.... |.... .-.++.+.... .+ + .--.+.++.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~--~~-~--~i~id~iR~l~ 95 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEA-PQGGGACGSCKGCQLLRAGSHPDNFVLEPEE--AD-K--TIKVDQVRELV 95 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEEEEeccC--CC-C--CCCHHHHHHHH
Confidence 34478999999999999999999985422 10000 00233332110 00 0 01133455555
Q ss_pred HHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccHHHHcccceeee
Q 046258 265 KEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYV 339 (900)
Q Consensus 265 ~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i 339 (900)
+.+... ++.-|++||++|.|.. .++|.|+..|+. +...+|.+|+.... .-|.+++|++.+.+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~--------~aaNaLLK~LEEPp~~~~fiL~t~~~~~-----ll~TI~SRc~~~~~ 162 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR--------NAANALLKSLEEPSGDTVLLLISHQPSR-----LLPTIKSRCQQQAC 162 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH--------HHHHHHHHHHhCCCCCeEEEEEECChhh-----CcHHHHhhceeeeC
Confidence 554432 3455789999999854 467799999986 45666666654442 67999999999999
Q ss_pred cCCChHHHHHHHH
Q 046258 340 AEPSVPDTVSILR 352 (900)
Q Consensus 340 ~~P~~~e~~~ilr 352 (900)
..|+.++..+.+.
T Consensus 163 ~~~~~~~~~~~L~ 175 (328)
T PRK05707 163 PLPSNEESLQWLQ 175 (328)
T ss_pred CCcCHHHHHHHHH
Confidence 8888877665553
No 436
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.56 E-value=6.4e-07 Score=87.87 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=88.2
Q ss_pred CchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC-------------CCCcEEEEEechhhhh
Q 046258 183 GRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN-------------LADVRLIALDMGALVA 248 (900)
Q Consensus 183 G~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~-------------l~~~~~~~~~~~~l~~ 248 (900)
|++..++.+...+....-.| .||+||+|+||+++|..+|+.+........ .....++.++......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78888999999888876666 699999999999999999999855332100 1122344443332100
Q ss_pred cccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHH
Q 046258 249 GAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKY 323 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~ 323 (900)
.-..+.++.+...+... .+.-|++||++|.|.. +++|.|+..|++. .+++|..|+...
T Consensus 81 -----~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~--------~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 81 -----SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE--------EAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp -----SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H--------HHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred -----hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH--------HHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 00123444444443322 2355899999998854 5677999999864 567776665433
Q ss_pred hhccHHHHcccceeeecCC
Q 046258 324 VEKDAAFERRFQQVYVAEP 342 (900)
Q Consensus 324 ~~~d~al~~Rf~~i~i~~P 342 (900)
..-|.+++|+..+.+...
T Consensus 144 -~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GS-HHHHTTSEEEEE---
T ss_pred -HChHHHHhhceEEecCCC
Confidence 267999999998887543
No 437
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=2.3e-07 Score=87.36 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=82.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHh---CCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR---RPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~---~~~~vlll 666 (900)
.+++.||.|||||++++.+++.+. ....++.+|+.+....... ... +.+.+.+ ....++||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA--------------DPD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh--------------hhh-hHHHHHHhhccCCcEEEE
Confidence 489999999999999999998886 3557899999875432110 000 2222222 24689999
Q ss_pred ccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 667 DEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 667 DEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
|||+.++ +....+-.+.|++ .++.||+|+..... +.......|.+
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~----------------------l~~~~~~~l~g 112 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSL----------------------LSKDIAESLAG 112 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHH----------------------HhhcccccCCC
Confidence 9999996 6777777777752 34556666654211 12334567788
Q ss_pred cccceeecCCCCHHHH
Q 046258 747 RLDEIVVFDPLSHEQL 762 (900)
Q Consensus 747 R~~~~i~f~pl~~e~~ 762 (900)
|. ..+...|++..|+
T Consensus 113 r~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 113 RV-IEIELYPLSFREF 127 (128)
T ss_pred eE-EEEEECCCCHHHh
Confidence 98 6888999988764
No 438
>PRK09183 transposase/IS protein; Provisional
Probab=98.55 E-value=5.9e-08 Score=102.77 Aligned_cols=105 Identities=24% Similarity=0.302 Sum_probs=68.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH--hCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR--RRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~--~~~~~vlllD 667 (900)
+++|+||||||||+||.+|+......+..+..+++.++......+.. . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~-----------~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR-----------Q-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH-----------C-CcHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999998876554556666676654322111100 0 11222222 1345799999
Q ss_pred ccccc--CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 668 EVEKA--HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 668 Eidk~--~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
|++.. +.+..+.|+++++... .+.-+|+|||.++..+.+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w~~ 212 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQWDQ 212 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHHHH
Confidence 99874 4556678999997421 122378999999877653
No 439
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=4e-07 Score=98.98 Aligned_cols=214 Identities=17% Similarity=0.261 Sum_probs=134.8
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEeccccccccccc-ccc
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMSEYMEQHSV-SRL 636 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~~~~~~-~~l 636 (900)
+.|.+.-+..+.+.+..+.. .+. .|++.+.|-||||||.+-..+-..+..... ..+.+||..+.+...+ ..+
T Consensus 152 l~gRe~e~~~v~~F~~~hle----~~t-~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE----LNT-SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh----ccc-CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 55666666666666665532 233 368999999999999887755555443222 3488999886654332 222
Q ss_pred cCCC-CCCcccccccc----hhHHHHhC-CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 637 IGAP-PGYVGHEEGGQ----LTEAVRRR-PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 637 ~G~~-~g~~g~~~~~~----l~~~~~~~-~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
++.- -+.++...+.. +.....+. .-=|+++||+|.+...-+..|+.+++--.+ ..+..++|..+|.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiGiANs 298 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeeeehhh
Confidence 2211 01112222212 22233333 345799999999998888888888874332 2355667777764
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcc---cceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRL---DEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVT 787 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~---~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~ 787 (900)
= + +..+|-|-|..|+ ...+.|.||+.++|.+|+...|.... ...+-
T Consensus 299 l--D---------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--------t~~~~ 347 (529)
T KOG2227|consen 299 L--D---------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--------TSIFL 347 (529)
T ss_pred h--h---------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--------ccccc
Confidence 1 1 1345666666655 35899999999999999999888433 45566
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 788 DAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 788 ~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+.+++..++.........|.+-.+++++|.
T Consensus 348 ~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 348 NAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 688999888754433337877777776554
No 440
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-07 Score=104.38 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=37.4
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.|.+++|++...+.+.-... ...|+|++||||||||++|+-+...+
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccC
Confidence 46679999888887764443 46799999999999999999887655
No 441
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.3e-06 Score=93.85 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=89.8
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc--CCCCCCcccccccchhHHHHh-----CCC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI--GAPPGYVGHEEGGQLTEAVRR-----RPY 661 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~--G~~~g~~g~~~~~~l~~~~~~-----~~~ 661 (900)
..+||+|+.|+||+.+|+.+++.+.+....- ++-+.. +.....+- | +.++.+....+.+.+.. .++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~--p~n~~~~d~~g---~~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQEL--PANIILFDIFD---KDLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCC--CcceEEeccCC---CcCCHHHHHHHHHHhccCCcccCCc
Confidence 3688999999999999999999986522100 000000 00000010 1 01111111112222211 356
Q ss_pred eEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
.|+++|++|++....+|.||+.|++ ...+++||++|+. ...+.
T Consensus 92 KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~--------------------------~~kll 134 (299)
T PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKN--------------------------INKVL 134 (299)
T ss_pred eEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC--------------------------hHhCh
Confidence 8999999999999999999999998 4578889987774 34577
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
|.+.+|| .++.|.|++.+++...+..
T Consensus 135 ~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 135 PTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 8999999 9999999999998766554
No 442
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=4.6e-07 Score=85.36 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcc
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDE 280 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 280 (900)
..++|+||.||||||+++.+++.+. + ..+++++|+......... ... +...+... ...++.+|||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~----~~~~~yi~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----P----PENILYINFDDPRDRRLA--DPD--LLEYFLEL-IKPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----c----cccceeeccCCHHHHHHh--hhh--hHHHHHHh-hccCCcEEEEeh
Confidence 4588999999999999999998874 1 345788887765431110 000 11222111 112467899999
Q ss_pred hhhhhhCCCCCChhhHHHhHhhhhhcC-cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHH
Q 046258 281 IHLVLGAGRTEGSMDAANLFKPMLARG-QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPD 346 (900)
Q Consensus 281 i~~l~~~~~~~~~~~~~~~L~~~l~~g-~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e 346 (900)
++.+. +....++.+.+++ .+.++.++........ .....+..|...+.+.+.+..|
T Consensus 70 iq~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhhc---------cHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeEEEEEECCCCHHH
Confidence 98873 2344666677665 6788888854443211 3456677788778887766654
No 443
>PRK12377 putative replication protein; Provisional
Probab=98.52 E-value=4.6e-07 Score=94.61 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH--HHHHHHHHHHHHcCCCeEEE
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE--ERLKAVLKEVEEAEGKVILF 277 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~--~~l~~~~~~~~~~~~~~iL~ 277 (900)
..+++|+||||||||++|.+|++.+...+ ..++.++...+....+ ..+. .....++..+. ..-+|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g-------~~v~~i~~~~l~~~l~--~~~~~~~~~~~~l~~l~---~~dLLi 168 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG-------RSVIVVTVPDVMSRLH--ESYDNGQSGEKFLQELC---KVDLLV 168 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CCeEEEEHHHHHHHHH--HHHhccchHHHHHHHhc---CCCEEE
Confidence 46899999999999999999999987653 4477777777654211 1110 01122333333 244799
Q ss_pred EcchhhhhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecC--HHHHHHHhhccHHHHccc
Q 046258 278 IDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATT--LEEYRKYVEKDAAFERRF 334 (900)
Q Consensus 278 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att--~~~~~~~~~~d~al~~Rf 334 (900)
|||+..... +......|.++++. ...-+|.+|| ..++.+. ....+.+|+
T Consensus 169 IDDlg~~~~------s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~--~~~ri~dRl 222 (248)
T PRK12377 169 LDEIGIQRE------TKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTL--LGERVMDRM 222 (248)
T ss_pred EcCCCCCCC------CHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHH--hhHHHHHHH
Confidence 999955421 12233456666542 2234566675 3444332 344555665
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.51 E-value=9.1e-07 Score=94.21 Aligned_cols=143 Identities=17% Similarity=0.347 Sum_probs=86.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHH-HHH--------
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKE-VEE-------- 269 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~-~~~-------- 269 (900)
.+.|+||+||+|||||++++.+-+.+... ..-...+++++..... .++.+++. +..
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts~--------~~q~~ie~~l~k~~~~~~gP 96 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTSN--------QLQKIIESKLEKRRGRVYGP 96 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHHH--------HHHHCCCTTECECTTEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCHH--------HHHHHHhhcEEcCCCCCCCC
Confidence 46799999999999999998876544211 2234556776543211 11111110 000
Q ss_pred -cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------cEEEEEecCHHHHHHHhhccHHHHccc
Q 046258 270 -AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------QLRCIGATTLEEYRKYVEKDAAFERRF 334 (900)
Q Consensus 270 -~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~irvI~att~~~~~~~~~~d~al~~Rf 334 (900)
.++..|+||||++.-.++. -|.......|+++++.| .+.+++++++.. .....++.|.|.|
T Consensus 97 ~~~k~lv~fiDDlN~p~~d~--ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~is~R~~r~f 172 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQPDK--YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNPISPRFLRHF 172 (272)
T ss_dssp ESSSEEEEEEETTT-S---T--TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--SHHHHHHTTE
T ss_pred CCCcEEEEEecccCCCCCCC--CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCCCChHHhhhe
Confidence 1235699999998765543 34555667888888754 467888876532 2234689999999
Q ss_pred ceeeecCCChHHHHHHHHHHHHHHhc
Q 046258 335 QQVYVAEPSVPDTVSILRGLKEKYEG 360 (900)
Q Consensus 335 ~~i~i~~P~~~e~~~ilr~l~~~~~~ 360 (900)
..+.++.|+.+....|...+...+-.
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~~~l~ 198 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQSHLK 198 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHHHHTC
T ss_pred EEEEecCCChHHHHHHHHHHHhhhcc
Confidence 99999999999999999888776543
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=3.3e-07 Score=87.32 Aligned_cols=125 Identities=25% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc------------cccchHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA------------KYRGEFEERLKAVLKEV 267 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~------------~~~g~~~~~l~~~~~~~ 267 (900)
..+++|+||||||||++++.++..+.... ..++.+++....... .............+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999884432 237777776543211 11122333455556655
Q ss_pred HHcCCCeEEEEcchhhhhhCCCCCChhhH--HHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccce
Q 046258 268 EEAEGKVILFIDEIHLVLGAGRTEGSMDA--ANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQ 336 (900)
Q Consensus 268 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~--~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~~ 336 (900)
.... +.++||||++.+............ ..............+|++++... ...+..+..|+..
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~ 140 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDR 140 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccce
Confidence 5544 578999999888654322000000 00122333456688888887411 1234455556654
No 446
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.1e-06 Score=91.70 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCC------------cEEEEEechhhhhccc
Q 046258 185 DEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLAD------------VRLIALDMGALVAGAK 251 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~------------~~~~~~~~~~l~~g~~ 251 (900)
....+++.+.+.+..-.| +||+||+|+||+++|..+|+.+...+ |..... -.++.+....-..|.+
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~-~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG-PDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC-CCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 466788888887766555 88999999999999999999885432 110000 0122221000000100
Q ss_pred c-cchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHHhh
Q 046258 252 Y-RGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKYVE 325 (900)
Q Consensus 252 ~-~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~~~ 325 (900)
. ..-..+.++.+.+.+... ++.-|++||++|.|.. .++|.|+..|+.. ...+|..++....
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~~~fiL~~~~~~~----- 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR--------AACNALLKTLEEPSPGRYLWLISAQPAR----- 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--------HHHHHHHHHhhCCCCCCeEEEEECChhh-----
Confidence 0 001133455555544432 3346899999999843 4677899999854 5555655543332
Q ss_pred ccHHHHcccceeeecCCChHHHHHHHH
Q 046258 326 KDAAFERRFQQVYVAEPSVPDTVSILR 352 (900)
Q Consensus 326 ~d~al~~Rf~~i~i~~P~~~e~~~ilr 352 (900)
+-|.+++|++.+.+..|+.++..+.|.
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHH
Confidence 569999999999998888876665553
No 447
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=5.5e-06 Score=90.86 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--------------CCCcEEEEEechhhhhc
Q 046258 185 DEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--------------LADVRLIALDMGALVAG 249 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~g 249 (900)
....+++.+.+.+....| .||.||+|+||+++|..+|+.+........ ...-.++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 456788888887755555 678899999999999999999854211000 0001122221100 0
Q ss_pred ccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEec-CHHHHHHH
Q 046258 250 AKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGAT-TLEEYRKY 323 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~at-t~~~~~~~ 323 (900)
.... ..+.++.+...+... ++.-|++||+++.|.. .++|.|+..|+++ ...+|..| +...
T Consensus 85 ~~~I--~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~~---- 150 (334)
T PRK07993 85 KSSL--GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD--------AAANALLKTLEEPPENTWFFLACREPAR---- 150 (334)
T ss_pred cccC--CHHHHHHHHHHHhhccccCCceEEEEcchHhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChhh----
Confidence 0000 133455555544322 3355899999998853 4678999999753 44555555 4443
Q ss_pred hhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHH
Q 046258 324 VEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVD 396 (900)
Q Consensus 324 ~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld 396 (900)
+-|.+++|++.+.+..|+.++....|. +. . .++++....++.++ ..-|..|.++++
T Consensus 151 --lLpTIrSRCq~~~~~~~~~~~~~~~L~---~~----~--~~~~~~a~~~~~la------~G~~~~Al~l~~ 206 (334)
T PRK07993 151 --LLATLRSRCRLHYLAPPPEQYALTWLS---RE----V--TMSQDALLAALRLS------AGAPGAALALLQ 206 (334)
T ss_pred --ChHHHHhccccccCCCCCHHHHHHHHH---Hc----c--CCCHHHHHHHHHHc------CCCHHHHHHHhc
Confidence 678999999999988887766555443 21 1 24444444555555 223445655543
No 448
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.47 E-value=1.1e-06 Score=99.15 Aligned_cols=185 Identities=20% Similarity=0.259 Sum_probs=106.8
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc-ccch---hHHHHhCCCeE
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE-GGQL---TEAVRRRPYSV 663 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~-~~~l---~~~~~~~~~~v 663 (900)
..+|||+|-||||||.+-+.+++.+-++ +..+.-. +.-.|- ..|+-.+. .+++ .+++--+.+++
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTSGkG-------sSavGL-TayVtrd~dtkqlVLesGALVLSD~Gi 529 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRG----VYTSGKG-------SSAVGL-TAYVTKDPDTRQLVLESGALVLSDNGI 529 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcc----eeecCCc-------cchhcc-eeeEEecCccceeeeecCcEEEcCCce
Confidence 3589999999999999999999998552 1111100 000110 01222211 1111 12344456789
Q ss_pred EEEccccccCHHHHHHHHHHhhCCeeecCC-Cceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
-+|||+|||....++.|+++|+.-+++-.. |--..+ .++-||+++|+--...+.... +.+ .=.++
T Consensus 530 CCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~-----------i~e--NI~Lp 596 (804)
T KOG0478|consen 530 CCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKS-----------IIE--NINLP 596 (804)
T ss_pred EEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCc-----------hhh--ccCCC
Confidence 999999999999999999999976554433 322222 256677888853222211000 000 12479
Q ss_pred HHHHhcccceee-cCCCCHHHHHHHHHHHHHH-------------------HHHHHHhcCCccccCHHHHHHHHHc
Q 046258 742 PELLNRLDEIVV-FDPLSHEQLRKVARLQMKD-------------------VAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 742 ~~ll~R~~~~i~-f~pl~~e~~~~I~~~~l~~-------------------~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
|.|++|||.++. +.+.++.-=+.|+.+.... ..-.+..+.+...+++++...|...
T Consensus 597 ptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 597 PTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQA 672 (804)
T ss_pred hhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHH
Confidence 999999997544 4446654223344432221 1223344556788999998888765
No 449
>PRK08116 hypothetical protein; Validated
Probab=98.47 E-value=1.4e-06 Score=92.65 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc--ccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK--YRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
.+++|+|++|||||+||.+|++.+...+. +++.++...++...+ +.+........++..+.. .-+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~-------~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~---~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGV-------PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN---ADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC---CCEEEE
Confidence 35999999999999999999999866543 488888777654211 111101112233333332 236999
Q ss_pred cchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCH--HHHHHHhhccHHHHcccc----eeeecCCCh
Q 046258 279 DEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTL--EEYRKYVEKDAAFERRFQ----QVYVAEPSV 344 (900)
Q Consensus 279 DEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~--~~~~~~~~~d~al~~Rf~----~i~i~~P~~ 344 (900)
||++..... ......+.+++.....++ ..+|.+||. .++... .+..+.+|+. +|.+.-|+.
T Consensus 185 DDlg~e~~t--~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~--~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 185 DDLGAERDT--EWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQ--YGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ecccCCCCC--HHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHH--HhHHHHHHHHHcCEEEEeeCcCh
Confidence 999542111 001112223333333333 456667754 333322 4577777852 355555543
No 450
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.42 E-value=3.2e-06 Score=91.90 Aligned_cols=211 Identities=22% Similarity=0.234 Sum_probs=116.8
Q ss_pred CCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEE------echhhhhc---
Q 046258 179 DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIAL------DMGALVAG--- 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~------~~~~l~~g--- 249 (900)
.-++|+++--..|.-..-...-.++||-|+.||||||++|+||..+....+- .|++|-.= -|......
T Consensus 17 ~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 17 TAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred hhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhccc
Confidence 3478887765555544444566689999999999999999999988443210 01111000 00000000
Q ss_pred --------------ccccchHHHH----------HHH-----HHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhH
Q 046258 250 --------------AKYRGEFEER----------LKA-----VLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLF 300 (900)
Q Consensus 250 --------------~~~~g~~~~~----------l~~-----~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L 300 (900)
.-..|..+.+ ++. -.+.+..++.| |||+||+..|.. .+.+.|
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRG-IlYvDEvnlL~d--------~lvd~L 164 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRG-ILYVDEVNLLDD--------HLVDAL 164 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCC-EEEEeccccccH--------HHHHHH
Confidence 0011222221 110 01223345545 599999977754 355688
Q ss_pred hhhhhcC---------------cEEEEEecCHHHHHHHhhccHHHHcccce-eeecCC-ChHHHHHHHHHHHHHHhcccC
Q 046258 301 KPMLARG---------------QLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEP-SVPDTVSILRGLKEKYEGHHG 363 (900)
Q Consensus 301 ~~~l~~g---------------~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P-~~~e~~~ilr~l~~~~~~~~~ 363 (900)
+.+++.| ++.+|+++|+.+- ++-|.|..||.. |.+..| +.+++.+|++.-... +....
T Consensus 165 Ld~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f-~~~Pe 239 (423)
T COG1239 165 LDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF-EAVPE 239 (423)
T ss_pred HHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh-hcCcH
Confidence 8888765 4678888898752 567899999975 777555 677888887654332 11000
Q ss_pred --cc-cC--hhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhhhhc
Q 046258 364 --VR-IQ--DRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQL 406 (900)
Q Consensus 364 --v~-i~--~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~~~~ 406 (900)
+. +. ...+..-.......++...+++.+...+-..|....+..
T Consensus 240 ~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g 287 (423)
T COG1239 240 AFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG 287 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC
Confidence 00 10 111111111222344555667777777777776665543
No 451
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.39 E-value=3.2e-07 Score=104.82 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=88.9
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCc------------------EE
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADV------------------RL 238 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~------------------~~ 238 (900)
.+..++|+...++.+. +.-....+++|+||||+|||++++.|+..+........+... +|
T Consensus 189 d~~~v~Gq~~~~~al~--laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE--ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhh--eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 4566788887776653 233456789999999999999999999766322111111111 11
Q ss_pred EEE----echhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc------
Q 046258 239 IAL----DMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ------ 308 (900)
Q Consensus 239 ~~~----~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~------ 308 (900)
..- ...+++.|.. ....+.+..+++|+ |||||++.+.+. ..+.|.+.|+.|.
T Consensus 267 r~ph~~~s~~~l~GGg~---------~~~pG~l~~A~gGv-LfLDEi~e~~~~--------~~~~L~~~LE~g~v~I~r~ 328 (506)
T PRK09862 267 RSPHHSASLTAMVGGGA---------IPGPGEISLAHNGV-LFLDELPEFERR--------TLDALREPIESGQIHLSRT 328 (506)
T ss_pred cCCCccchHHHHhCCCc---------eehhhHhhhccCCE-EecCCchhCCHH--------HHHHHHHHHHcCcEEEecC
Confidence 111 1111222111 01224566677666 999999776553 3447888776553
Q ss_pred ---------EEEEEecCHHH---H------------HHH-hhccHHHHcccce-eeecCCChH
Q 046258 309 ---------LRCIGATTLEE---Y------------RKY-VEKDAAFERRFQQ-VYVAEPSVP 345 (900)
Q Consensus 309 ---------irvI~att~~~---~------------~~~-~~~d~al~~Rf~~-i~i~~P~~~ 345 (900)
+++|+++|+.+ | .+| -...+.+.+||+. +.++.|+..
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 58899988654 1 111 1356788999986 667666543
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=2.4e-06 Score=80.72 Aligned_cols=109 Identities=19% Similarity=0.316 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh------------ccccc--chHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------------GAKYR--GEFEERLKAVL 264 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------g~~~~--g~~~~~l~~~~ 264 (900)
.+..++++||||+|||++++.+++.+.....+.. +.+++.+++..... +.... .........+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998743210000 34588888765421 11111 23344444555
Q ss_pred HHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCH
Q 046258 265 KEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTL 317 (900)
Q Consensus 265 ~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~ 317 (900)
..+.... ..+|+|||+|.+. .....+.|+.+++...+.+|.++++
T Consensus 81 ~~l~~~~-~~~lviDe~~~l~-------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRR-VVLLVIDEADHLF-------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCT-EEEEEEETTHHHH-------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcC-CeEEEEeChHhcC-------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 5555444 4689999999986 1556778888888888999888875
No 453
>PRK06921 hypothetical protein; Provisional
Probab=98.35 E-value=7e-07 Score=94.83 Aligned_cols=104 Identities=24% Similarity=0.332 Sum_probs=66.4
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEE
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLF 666 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlll 666 (900)
.+++|+||||||||+||.+|++.+... +..++.++..++... +... + +.+...+. -....||+|
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~-----l~~~---~------~~~~~~~~~~~~~dlLiI 183 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD-----LKDD---F------DLLEAKLNRMKKVEVLFI 183 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH-----HHHH---H------HHHHHHHHHhcCCCEEEE
Confidence 369999999999999999999998764 556667766543221 1000 0 01111222 124579999
Q ss_pred ccccc-------cCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 667 DEVEK-------AHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 667 DEidk-------~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
||++. +....+..|+.+++... . .+.-+|+|||..++.+.
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~-~---------~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRY-L---------NHKPILISSELTIDELL 230 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHh
Confidence 99943 44555677888887421 0 12337889999877664
No 454
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.1e-05 Score=87.61 Aligned_cols=149 Identities=12% Similarity=0.169 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCC--CC------------CCcEEEEEechhhhhc
Q 046258 185 DEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPS--NL------------ADVRLIALDMGALVAG 249 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~--~l------------~~~~~~~~~~~~l~~g 249 (900)
....+.+.+.+.+....| .||.||+|+||+++|+.+|+.+...+... .. ..-.++.+... .|
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~ 84 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN 84 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC
Confidence 455677777777755445 66889999999999999999885532110 00 00112223211 11
Q ss_pred ccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHHh
Q 046258 250 AKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKYV 324 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~~ 324 (900)
.. . -.+.++.+.+.+... ++.-|++||++|.|.. .++|.|+..|+++ ...+|..|+....
T Consensus 85 ~~-I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~--------~AaNaLLKtLEEPp~~~~fiL~t~~~~~---- 149 (325)
T PRK06871 85 KD-I--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE--------AAANALLKTLEEPRPNTYFLLQADLSAA---- 149 (325)
T ss_pred CC-C--CHHHHHHHHHHHhhccccCCceEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChHh----
Confidence 11 1 133455555544322 3345899999999853 4677999999753 4555555543332
Q ss_pred hccHHHHcccceeeecCCChHHHHHHHH
Q 046258 325 EKDAAFERRFQQVYVAEPSVPDTVSILR 352 (900)
Q Consensus 325 ~~d~al~~Rf~~i~i~~P~~~e~~~ilr 352 (900)
.-|.+++|++.+.+..|+.++..+.|.
T Consensus 150 -llpTI~SRC~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 150 -LLPTIYSRCQTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred -CchHHHhhceEEeCCCCCHHHHHHHHH
Confidence 678999999999998888877665554
No 455
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.33 E-value=1.3e-06 Score=86.91 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc---ccccchHHHHHHHHHHHHHHcCCCe
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG---AKYRGEFEERLKAVLKEVEEAEGKV 274 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g---~~~~g~~~~~l~~~~~~~~~~~~~~ 274 (900)
..+.|++|+||||||||++|.++++.+... +..+..++...++.. ....+.. ...+..+... .
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~----~~~~~~l~~~--d- 110 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGSY----EELLKRLKRV--D- 110 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTTH----CHHHHHHHTS--S-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccch----hhhcCccccc--c-
Confidence 456799999999999999999999988775 444888888877542 1112222 2334444433 3
Q ss_pred EEEEcchhhhhhCCCCCChhhHHHhHhhhhh---cCcEEEEEecCH
Q 046258 275 ILFIDEIHLVLGAGRTEGSMDAANLFKPMLA---RGQLRCIGATTL 317 (900)
Q Consensus 275 iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~g~irvI~att~ 317 (900)
+|+|||+... ..+....+.|..++. +.. ..|.+||.
T Consensus 111 lLilDDlG~~------~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 111 LLILDDLGYE------PLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp CEEEETCTSS---------HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred Eeccccccee------eecccccccchhhhhHhhccc-CeEeeCCC
Confidence 5999999432 122233344554443 223 45667754
No 456
>PRK08181 transposase; Validated
Probab=98.33 E-value=4e-06 Score=88.72 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=49.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
...|++|+||||||||++|.+|+..+.+. +..++.++...++..-. .......+...+..+.. .-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~~---~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLDK---FDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHhc---CCEEEE
Confidence 45689999999999999999999988654 44477777777654111 00001112233333333 347999
Q ss_pred cchhhhhh
Q 046258 279 DEIHLVLG 286 (900)
Q Consensus 279 DEi~~l~~ 286 (900)
||++.+..
T Consensus 174 DDlg~~~~ 181 (269)
T PRK08181 174 DDLAYVTK 181 (269)
T ss_pred eccccccC
Confidence 99977643
No 457
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3e-07 Score=87.01 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=62.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCC-----CCceeEeccccccccccc----ccccCCCCCC--cccccccchhHHHH
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDD-----ENLLVRIDMSEYMEQHSV----SRLIGAPPGY--VGHEEGGQLTEAVR 657 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~i~i~~~~~~~~~~~----~~l~G~~~g~--~g~~~~~~l~~~~~ 657 (900)
+.++++||||+|||++++.+++.+... ..+++.++|......... ...+|.+... ........+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 369999999999999999999987431 347788888775532221 2223332221 00001123444555
Q ss_pred hCCCeEEEEcccccc-CHHHHHHHHHHhhC
Q 046258 658 RRPYSVVLFDEVEKA-HISVFNTLLQVLDD 686 (900)
Q Consensus 658 ~~~~~vlllDEidk~-~~~~~~~Ll~~ld~ 686 (900)
.....+|+|||+|.+ +..+++.|..+++.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNE 114 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhC
Confidence 555579999999999 98899999888874
No 458
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.30 E-value=1.9e-06 Score=90.16 Aligned_cols=190 Identities=22% Similarity=0.380 Sum_probs=95.0
Q ss_pred hcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccc-----
Q 046258 561 IGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR----- 635 (900)
Q Consensus 561 ~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~----- 635 (900)
+|.+.-++.+.+.+... +..+++++||.|+|||+|.+.+.+.+.......+.+++..-........
T Consensus 2 ~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 45555666676665432 2236999999999999999999998844332333333322111100000
Q ss_pred --------ccCCC-CCCcc--------ccccc---chhHHHHhC-CCeEEEEccccccC------HHHHHHHHHHhhCCe
Q 046258 636 --------LIGAP-PGYVG--------HEEGG---QLTEAVRRR-PYSVVLFDEVEKAH------ISVFNTLLQVLDDGR 688 (900)
Q Consensus 636 --------l~G~~-~g~~g--------~~~~~---~l~~~~~~~-~~~vlllDEidk~~------~~~~~~Ll~~ld~g~ 688 (900)
.++.. ++..+ ..... .+.+.+... ...||+|||++.+. +.+...|...++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 01110 11100 00111 122333333 34899999999988 567778888887511
Q ss_pred eecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 689 LTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 689 ~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
...++.+|+++...+ +.. . ...-.+++.+|+.. +.+.|++.++..+++..
T Consensus 153 ---------~~~~~~~v~~~S~~~--~~~-----------------~-~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~ 202 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDS--LME-----------------E-FLDDKSPLFGRFSH-IELKPLSKEEAREFLKE 202 (234)
T ss_dssp -----------TTEEEEEEESSHH--HHH-----------------H-TT-TTSTTTT---E-EEE----HHHHHHHHHH
T ss_pred ---------ccCCceEEEECCchH--HHH-----------------H-hhcccCccccccce-EEEeeCCHHHHHHHHHH
Confidence 123444444443211 110 0 01124568899966 99999999999998888
Q ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHHc
Q 046258 769 QMKDVAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 769 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
...+. +.+.++++.++.+...
T Consensus 203 ~~~~~--------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 203 LFKEL--------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp HHHCC--------------HHHHHHHHHH
T ss_pred HHHHh--------hcccCCHHHHHHHHHH
Confidence 76621 1224588888888754
No 459
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.6e-05 Score=86.86 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCC-CCCC--------------CCCcEEEEEechhhh---
Q 046258 186 EEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGD-VPSN--------------LADVRLIALDMGALV--- 247 (900)
Q Consensus 186 ~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~-~p~~--------------l~~~~~~~~~~~~l~--- 247 (900)
...+++... ..+-+...||+||+|+||+++|+.+|+.+.... .+.. ...-.++.+......
T Consensus 8 ~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 8 DDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 345555553 344455688999999999999999999885532 1100 001112222211100
Q ss_pred --------------hccc---c-cchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc
Q 046258 248 --------------AGAK---Y-RGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR 306 (900)
Q Consensus 248 --------------~g~~---~-~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 306 (900)
.|.+ . ..=..+.++.+...+... ++.-|++||++|.|.. .++|.|+..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEE 158 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------AAANALLKTLEE 158 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------HHHHHHHHHhcC
Confidence 0000 0 001134455555544322 3345899999999853 467799988974
Q ss_pred C--cEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHH
Q 046258 307 G--QLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILR 352 (900)
Q Consensus 307 g--~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr 352 (900)
. .+.+|..|+..+. +.|.+++|++.+.+..|+.++..+.|.
T Consensus 159 Pp~~t~fiL~t~~~~~-----LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 159 PPPGTVFLLVSARIDR-----LLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred CCcCcEEEEEECChhh-----CcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 3 4556666644432 689999999999999888877766664
No 460
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.2e-06 Score=99.92 Aligned_cols=112 Identities=26% Similarity=0.451 Sum_probs=81.3
Q ss_pred CCCCCchHHHHHHHHHHcc------C--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh--
Q 046258 179 DPVIGRDEEIRRVVRILSR------R--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~------~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-- 248 (900)
+.++||++++..+.+.+.+ + +...++|.||.|||||-+|+++|..+...+- .|+.+|+++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~-------~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE-------NFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc-------ceEEechhhhhhhh
Confidence 3599999999999998865 1 2223799999999999999999999966643 399999997322
Q ss_pred -----cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc
Q 046258 249 -----GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ 308 (900)
Q Consensus 249 -----g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~ 308 (900)
...|+|..+.- .+.+.++. .+.+|++||||+. .+.++.|.|++++++|+
T Consensus 635 kligsp~gyvG~e~gg--~Lteavrr-rP~sVVLfdeIEk--------Ah~~v~n~llq~lD~Gr 688 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEGG--QLTEAVKR-RPYSVVLFEEIEK--------AHPDVLNILLQLLDRGR 688 (898)
T ss_pred hccCCCcccccchhHH--HHHHHHhc-CCceEEEEechhh--------cCHHHHHHHHHHHhcCc
Confidence 12345543321 23333443 4578999999954 46678889999998774
No 461
>PHA00729 NTP-binding motif containing protein
Probab=98.28 E-value=3.4e-06 Score=85.80 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCC------CCCCCcEEEEEechhhhhcccccchHHHHHHH
Q 046258 189 RRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVP------SNLADVRLIALDMGALVAGAKYRGEFEERLKA 262 (900)
Q Consensus 189 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p------~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~ 262 (900)
++.++.+......|++|+|+||||||++|.+|++.+...-.+ ....+...+.++...+.. .++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~----------~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALE----------KIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHH----------HHHH
Confidence 344444554455689999999999999999999987311000 000122344444444332 2222
Q ss_pred HHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccceeeecCC
Q 046258 263 VLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEP 342 (900)
Q Consensus 263 ~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P 342 (900)
.+. .....-+|+|||+..-..... . .......++...+++++|+..+.+..+
T Consensus 76 a~~---~~~~~dlLIIDd~G~~~~~~~-------------w------------h~~~~~~yf~L~~aLrSR~~l~il~~l 127 (226)
T PHA00729 76 AID---NDYRIPLIIFDDAGIWLSKYV-------------W------------YEDYMKTFYKIYALIRTRVSAVIFTTP 127 (226)
T ss_pred HHh---cCCCCCEEEEeCCchhhcccc-------------h------------hhhccchHHHHHHHHHhhCcEEEEecC
Confidence 221 111113699999833321100 0 000012234467888889998888888
Q ss_pred ChHHHHHHHHH
Q 046258 343 SVPDTVSILRG 353 (900)
Q Consensus 343 ~~~e~~~ilr~ 353 (900)
+.++....++.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 87777766653
No 462
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.26 E-value=3.3e-06 Score=91.36 Aligned_cols=106 Identities=22% Similarity=0.340 Sum_probs=69.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDE 668 (900)
+++|+||+|||||+||.+||..+...+.++..+.++++..... ..++. +.+.+.+. -....||+|||
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--~~~~~----------~~~~~~l~~l~~~dlLiIDD 225 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--NSISD----------GSVKEKIDAVKEAPVLMLDD 225 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--HHHhc----------CcHHHHHHHhcCCCEEEEec
Confidence 6999999999999999999999987677777888776643321 11111 11223332 23457999999
Q ss_pred ccc--cCHHHHHHHHH-HhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 669 VEK--AHISVFNTLLQ-VLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 669 idk--~~~~~~~~Ll~-~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
+.. +++.+.+.++. +++. ++ ..+.-.|+|||...+.+.+
T Consensus 226 iG~e~~s~~~~~~ll~~Il~~-R~---------~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 226 IGAEQMSSWVRDEVLGVILQY-RM---------QEELPTFFTSNFDFDELEH 267 (306)
T ss_pred CCCccccHHHHHHHHHHHHHH-HH---------HCCCeEEEECCCCHHHHHH
Confidence 975 44555545555 4453 21 1234589999998876644
No 463
>PF05729 NACHT: NACHT domain
Probab=98.26 E-value=1.4e-05 Score=78.60 Aligned_cols=144 Identities=18% Similarity=0.295 Sum_probs=81.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHH-----------HHHHHHHHHHc
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEER-----------LKAVLKEVEEA 270 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~-----------l~~~~~~~~~~ 270 (900)
-++|+|+||+|||++++.++..+.....+.. ...-++.+++......... ..+... ....+..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPS-KFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccc-cceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 3688999999999999999999877654321 0122344555444321110 111111 11122233344
Q ss_pred CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecCHHHHHHHhhccHHHHccc---ceeeecCCCh
Q 046258 271 EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATTLEEYRKYVEKDAAFERRF---QQVYVAEPSV 344 (900)
Q Consensus 271 ~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att~~~~~~~~~~d~al~~Rf---~~i~i~~P~~ 344 (900)
.+.++|+||.+|.+....+..+.......|..++.. ..++++.++++..... +.+.+ ..+.+...+.
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-------~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-------LRRRLKQAQILELEPFSE 152 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-------HHHhcCCCcEEEECCCCH
Confidence 568899999999997643321223334455555543 4577888776544311 33322 3466666677
Q ss_pred HHHHHHHHHH
Q 046258 345 PDTVSILRGL 354 (900)
Q Consensus 345 ~e~~~ilr~l 354 (900)
++..++++..
T Consensus 153 ~~~~~~~~~~ 162 (166)
T PF05729_consen 153 EDIKQYLRKY 162 (166)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 464
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.26 E-value=4.4e-06 Score=87.06 Aligned_cols=128 Identities=15% Similarity=0.271 Sum_probs=73.1
Q ss_pred HHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH---HHHH
Q 046258 187 EIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE---ERLK 261 (900)
Q Consensus 187 ~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~---~~l~ 261 (900)
.+..+.+++... ...+++|+|+||||||+++.+|+..+... +..++.++.+.+.... ...+. ....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l--~~~~~~~~~~~~ 154 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAM--KDTFSNSETSEE 154 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHH--HHHHhhccccHH
Confidence 445555544432 23579999999999999999999998664 4457888887775421 11111 1122
Q ss_pred HHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecC--HHHHHHHhhccHHHHccc
Q 046258 262 AVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATT--LEEYRKYVEKDAAFERRF 334 (900)
Q Consensus 262 ~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att--~~~~~~~~~~d~al~~Rf 334 (900)
.++..+.. .-+|+|||++.... +......|..++.. ....+|.+|| ..++.+. .+..+.+|+
T Consensus 155 ~~l~~l~~---~dlLvIDDig~~~~------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~--~g~ri~sRl 221 (244)
T PRK07952 155 QLLNDLSN---VDLLVIDEIGVQTE------SRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL--LGERVMDRM 221 (244)
T ss_pred HHHHHhcc---CCEEEEeCCCCCCC------CHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH--hChHHHHHH
Confidence 33444433 33799999976531 11112344455542 2345666664 4444433 345555666
No 465
>PF05729 NACHT: NACHT domain
Probab=98.26 E-value=4.6e-06 Score=82.21 Aligned_cols=143 Identities=22% Similarity=0.361 Sum_probs=84.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCC------CceeEecccccccccc---ccccc-CCCCCCcccccccchhHHHHhC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDE------NLLVRIDMSEYMEQHS---VSRLI-GAPPGYVGHEEGGQLTEAVRRR 659 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~------~~~i~i~~~~~~~~~~---~~~l~-G~~~g~~g~~~~~~l~~~~~~~ 659 (900)
.++++|+||+|||++++.++..+.... .-.+.+++..+..... ...++ .......+... ..+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-ELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-HHHHHHHHcC
Confidence 489999999999999999998876533 1244566665544321 11122 11111111100 1223345566
Q ss_pred CCeEEEEccccccCHHH--------HHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHH
Q 046258 660 PYSVVLFDEVEKAHISV--------FNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ 731 (900)
Q Consensus 660 ~~~vlllDEidk~~~~~--------~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~ 731 (900)
+..+|+||.+|.+.... ...|.+++... .+.++.+|+|++....
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~------------------ 132 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAF------------------ 132 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChH------------------
Confidence 77889999999887633 23455555531 1356677777765321
Q ss_pred HHHHHHhcccHHHHhccc--ceeecCCCCHHHHHHHHHHHHH
Q 046258 732 VLQEVRKHFRPELLNRLD--EIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 732 ~~~~~~~~~~~~ll~R~~--~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+.+..++. ..+...|++++++.++++.++.
T Consensus 133 ----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 133 ----------PDLRRRLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ----------HHHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 11222221 5688899999999999988875
No 466
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.6e-06 Score=88.99 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCC-----CC----------CCCCcEEEEEechhh--h
Q 046258 185 DEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDV-----PS----------NLADVRLIALDMGAL--V 247 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~-----p~----------~l~~~~~~~~~~~~l--~ 247 (900)
+...+++... ..+-+..+||+||+|+|||++|+.+|+.+..... |= .-..-.|+.++...- .
T Consensus 7 ~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 7 QEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 3445565554 2334445889999999999999999999853211 10 000123555543210 0
Q ss_pred hcccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHH
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRK 322 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~ 322 (900)
.|.....=-.+.++.+...+... .+.-|++||+++.|.. .+.|.|+..++.. ...+|.+|.....
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------~a~naLLk~LEep~~~~~~Ilvth~~~~-- 155 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL--------QAANSLLKVLEEPPPQVVFLLVSHAADK-- 155 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCH--------HHHHHHHHHHHhCcCCCEEEEEeCChHh--
Confidence 01000000234556665555432 3345789999988754 3455777777743 4556666644332
Q ss_pred HhhccHHHHcccceeeecCCChHHHHHHH
Q 046258 323 YVEKDAAFERRFQQVYVAEPSVPDTVSIL 351 (900)
Q Consensus 323 ~~~~d~al~~Rf~~i~i~~P~~~e~~~il 351 (900)
..+.+.+|++.+.+..|+.++..+.|
T Consensus 156 ---ll~ti~SRc~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 156 ---VLPTIKSRCRKMVLPAPSHEEALAYL 181 (325)
T ss_pred ---ChHHHHHHhhhhcCCCCCHHHHHHHH
Confidence 56889999999999888887766555
No 467
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.25 E-value=4.1e-05 Score=88.41 Aligned_cols=215 Identities=18% Similarity=0.244 Sum_probs=113.2
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEe-cccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRI-DMSEYM 628 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i-~~~~~~ 628 (900)
+++.+...+.|.-...-++.|...+.....+.. +...+||+||||||||++++.||+.+.. .++.- +-..+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~----~~~iLlLtGP~G~GKtttv~~La~elg~---~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSS----PKRILLLTGPSGCGKTTTVKVLAKELGF---EVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCC----CcceEEEECCCCCCHHHHHHHHHHHhCC---eeEEecCCCCcc
Confidence 556666666666666778888888877644322 2225889999999999999999999854 22221 111100
Q ss_pred cc-cccccccCCCC---CCcccccccchhHH-H--------------HhCCCeEEEEccccccC----HHHHHHHHHHhh
Q 046258 629 EQ-HSVSRLIGAPP---GYVGHEEGGQLTEA-V--------------RRRPYSVVLFDEVEKAH----ISVFNTLLQVLD 685 (900)
Q Consensus 629 ~~-~~~~~l~G~~~---g~~g~~~~~~l~~~-~--------------~~~~~~vlllDEidk~~----~~~~~~Ll~~ld 685 (900)
.. .......+... .|.+. ...+.+. + ......|||++|+-... ..+++.|.+.+.
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLR 161 (519)
T ss_pred ccccccccccccccccccccch--hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHH
Confidence 00 00000000000 00000 0011111 0 01245799999986432 346677777777
Q ss_pred CCeeecCCCceeecCCeEEEEc--cCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCHHHH
Q 046258 686 DGRLTDGQGRTVDFRNTVIIMT--SNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSHEQL 762 (900)
Q Consensus 686 ~g~~~d~~g~~~~~~~~~iI~t--sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~ 762 (900)
.++. .-++||+| -+...+.-.. . -.-.+..-|++++++... ..|.|.|....-|
T Consensus 162 ~~~~----------~PlV~iiSe~~~~~~~~~~~-~------------~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~m 218 (519)
T PF03215_consen 162 SSRC----------LPLVFIISETESLSGDNSYR-S------------NSFTAERLFPKEILNHPGITRIKFNPIAPTFM 218 (519)
T ss_pred cCCC----------CCEEEEEecccccCCCCccc-c------------cchhhhhccCHHHHhCCCceEEEecCCCHHHH
Confidence 5331 14566666 1111000000 0 000012457899987432 6899999999888
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHc
Q 046258 763 RKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE 797 (900)
Q Consensus 763 ~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 797 (900)
.+-+.+.+....+..... ....-..++++.|+..
T Consensus 219 kKaL~rI~~~E~~~~~~~-~~~p~~~~~l~~I~~~ 252 (519)
T PF03215_consen 219 KKALKRILKKEARSSSGK-NKVPDKQSVLDSIAES 252 (519)
T ss_pred HHHHHHHHHHHhhhhcCC-ccCCChHHHHHHHHHh
Confidence 888777776443222111 1122234568888864
No 468
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.8e-05 Score=84.17 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC-------------CCCcEEEEEechhhhhcc
Q 046258 185 DEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN-------------LADVRLIALDMGALVAGA 250 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~-------------l~~~~~~~~~~~~l~~g~ 250 (900)
.+..+++...+.+..-.| .||+||.|+||+++|+.+|+.+...+.+.. -..-.|+.+.... .|
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~- 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-
Confidence 455677777776655444 788899999999999999998855432100 0011233332211 01
Q ss_pred cccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEec-CHHHHHHHh
Q 046258 251 KYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGAT-TLEEYRKYV 324 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~at-t~~~~~~~~ 324 (900)
+.. ..+.++.+...+..+ ++.-|++||++|.|.. .++|.|+..+++. ...+|..| +...
T Consensus 86 ~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~~----- 150 (319)
T PRK06090 86 KSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE--------SASNALLKTLEEPAPNCLFLLVTHNQKR----- 150 (319)
T ss_pred CcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChhh-----
Confidence 001 123344444443322 3345899999999853 4678999999753 35555555 4443
Q ss_pred hccHHHHcccceeeecCCChHHHHHHH
Q 046258 325 EKDAAFERRFQQVYVAEPSVPDTVSIL 351 (900)
Q Consensus 325 ~~d~al~~Rf~~i~i~~P~~~e~~~il 351 (900)
.-|.+++|++.+.+..|+.++..+.+
T Consensus 151 -lLpTI~SRCq~~~~~~~~~~~~~~~L 176 (319)
T PRK06090 151 -LLPTIVSRCQQWVVTPPSTAQAMQWL 176 (319)
T ss_pred -ChHHHHhcceeEeCCCCCHHHHHHHH
Confidence 57899999999999988877766555
No 469
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.25 E-value=1.8e-06 Score=78.44 Aligned_cols=94 Identities=23% Similarity=0.454 Sum_probs=59.5
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCC-----CceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEE
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDE-----NLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~-----~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vll 665 (900)
|+|+||||+|||++|+.|++.+...- ..+...+... +.. .||. ...+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~w---~gY~---------------~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KFW---DGYQ---------------GQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------chh---hccC---------------CCcEEE
Confidence 57999999999999999998886411 1111111100 000 1222 236999
Q ss_pred EccccccCHH----HHHHHHHHhhCCeeecCC----CceeecCCeEEEEccCC
Q 046258 666 FDEVEKAHIS----VFNTLLQVLDDGRLTDGQ----GRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 666 lDEidk~~~~----~~~~Ll~~ld~g~~~d~~----g~~~~~~~~~iI~tsn~ 710 (900)
+||+...... ....|+++++...+.-.. .+...|.--+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999887754 678899999977665321 12234555688899984
No 470
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.24 E-value=3.9e-06 Score=88.44 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc---cccchHHHHHHHHHHHHHHcCCCeE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA---KYRGEFEERLKAVLKEVEEAEGKVI 275 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~~i 275 (900)
.+.|++|+||||||||++|-+|+..+... |..++.+..++++..- ...|..+..+... +...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhcCC---E
Confidence 67899999999999999999999999754 4558888888775421 1113333333322 33332 7
Q ss_pred EEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC
Q 046258 276 LFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT 316 (900)
Q Consensus 276 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att 316 (900)
|+|||+....... .....+...+.....+... |.++|
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN 207 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSN 207 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecC
Confidence 9999995543221 1123334445555555555 66664
No 471
>PRK06921 hypothetical protein; Provisional
Probab=98.22 E-value=4.5e-06 Score=88.68 Aligned_cols=73 Identities=27% Similarity=0.504 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
...+++|+|+||||||+++.+|++.+.... +..++++....++... ...+ ..+...+..+.. .-+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~~---~dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMKK---VEVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhcC---CCEEEE
Confidence 457899999999999999999999885531 3447777766554311 1111 112222233322 347999
Q ss_pred cchhh
Q 046258 279 DEIHL 283 (900)
Q Consensus 279 DEi~~ 283 (900)
||++.
T Consensus 184 DDl~~ 188 (266)
T PRK06921 184 DDLFK 188 (266)
T ss_pred ecccc
Confidence 99944
No 472
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.22 E-value=9.8e-06 Score=91.12 Aligned_cols=209 Identities=16% Similarity=0.221 Sum_probs=119.0
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccch---hHHHHhCCCe
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQL---TEAVRRRPYS 662 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l---~~~~~~~~~~ 662 (900)
|...++|++|.|||||+.+-++....+.++ ...++..+... -|. ...+--.+.+.+ .+++--+.++
T Consensus 376 RGDinv~iVGDPgt~KSQfLk~v~~fsPR~-----vYtsGkaSSaA---GLT---aaVvkD~esgdf~iEAGALmLADnG 444 (764)
T KOG0480|consen 376 RGDINVCIVGDPGTGKSQFLKAVCAFSPRS-----VYTSGKASSAA---GLT---AAVVKDEESGDFTIEAGALMLADNG 444 (764)
T ss_pred cCCceEEEeCCCCccHHHHHHHHhccCCcc-----eEecCcccccc---cce---EEEEecCCCCceeeecCcEEEccCc
Confidence 445589999999999999999998887541 12222221110 000 000001111111 1234445678
Q ss_pred EEEEccccccCHHHHHHHHHHhhCCeeecCC-Cceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcc
Q 046258 663 VVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 663 vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~-g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
|=.|||+||++..-|.+|++.|+.-.++-.. |....+ .++-||+++|+-....... ..+++ .=.+
T Consensus 445 ICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~-------ktl~e------Ni~m 511 (764)
T KOG0480|consen 445 ICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRK-------KTLRE------NINM 511 (764)
T ss_pred eEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccc-------cchhh------hcCC
Confidence 9999999999998899999999977665443 322222 2455667777632111110 00000 1247
Q ss_pred cHHHHhcccceeecCC-CCHHHHHHHHHHHHHHH------------------HH--HHHhcCCccccCHHHHHHHHHc--
Q 046258 741 RPELLNRLDEIVVFDP-LSHEQLRKVARLQMKDV------------------AI--RLAERGVALAVTDAALDIVLAE-- 797 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l~~~------------------~~--~~~~~~~~~~~~~~a~~~l~~~-- 797 (900)
++++++|||.++.+.. .++..=..|+.+.+... .+ ++. +.+...++.++-+.|.++
T Consensus 512 sApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA-R~~~P~ls~ea~~~lve~Y~ 590 (764)
T KOG0480|consen 512 SAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA-RNFKPKLSKEASEMLVEKYK 590 (764)
T ss_pred CchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH-HhcCccccHHHHHHHHHHHH
Confidence 9999999997655554 77755455555543311 11 111 245677888887777643
Q ss_pred -------------CCCCCCCchHHHHHHHHHHHHHHHHH
Q 046258 798 -------------SYDPIYGARPIRRWLEKKVVTELSRM 823 (900)
Q Consensus 798 -------------~~~~~~g~R~L~~~i~~~i~~~l~~~ 823 (900)
+|+ ..+|+|+++|+ +..++++.
T Consensus 591 ~lR~~~~~~~~~~s~~--ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 591 GLRQRDAQGNNRSSYR--ITVRQLESLIR--LSEARARV 625 (764)
T ss_pred HHHHhhccccCccccc--ccHHHHHHHHH--HHHHHHhh
Confidence 122 34899999995 33444443
No 473
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.20 E-value=5.6e-06 Score=90.33 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc---ccchHHHHHHHHHHHHHHcCCCeE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK---YRGEFEERLKAVLKEVEEAEGKVI 275 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~~i 275 (900)
...+++|+||+|||||+|+.+||+.+.+. +..++.++...+..... +.... .....+..+...+ +
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~D---L 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINCD---L 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccCC---E
Confidence 34789999999999999999999998654 45588888777643111 00000 1111133343333 6
Q ss_pred EEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC--HHHHHHHhhccHHHHcccc
Q 046258 276 LFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT--LEEYRKYVEKDAAFERRFQ 335 (900)
Q Consensus 276 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att--~~~~~~~~~~d~al~~Rf~ 335 (900)
|+|||+....... .....+.+++.....++. .+|.+|| ..++... .++.+.+|+.
T Consensus 250 LIIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~~--~~eri~SRL~ 306 (329)
T PRK06835 250 LIIDDLGTEKITE--FSKSELFNLINKRLLRQK-KMIISTNLSLEELLKT--YSERISSRLL 306 (329)
T ss_pred EEEeccCCCCCCH--HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH--HhHHHHHHHH
Confidence 9999996653211 112233344444444443 4555554 4444333 3566777763
No 474
>PRK06526 transposase; Provisional
Probab=98.20 E-value=3.1e-06 Score=89.09 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc---cccchHHHHHHHHHHHHHHcCCCeE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA---KYRGEFEERLKAVLKEVEEAEGKVI 275 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~---~~~g~~~~~l~~~~~~~~~~~~~~i 275 (900)
.+.|++|+||||||||++|.+|+..+...+ .+++.+.+..++... ...|... ..+..+ .+.-+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-------~~v~f~t~~~l~~~l~~~~~~~~~~----~~l~~l---~~~dl 162 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-------HRVLFATAAQWVARLAAAHHAGRLQ----AELVKL---GRYPL 162 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-------CchhhhhHHHHHHHHHHHHhcCcHH----HHHHHh---ccCCE
Confidence 456899999999999999999999886543 335556665543211 1112222 222222 22457
Q ss_pred EEEcchhhhh
Q 046258 276 LFIDEIHLVL 285 (900)
Q Consensus 276 L~iDEi~~l~ 285 (900)
|+|||++.+.
T Consensus 163 LIIDD~g~~~ 172 (254)
T PRK06526 163 LIVDEVGYIP 172 (254)
T ss_pred EEEcccccCC
Confidence 9999997764
No 475
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.20 E-value=1.6e-05 Score=83.18 Aligned_cols=165 Identities=24% Similarity=0.392 Sum_probs=104.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-----
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL----- 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l----- 246 (900)
|.--++.|-.++-+.+.+++.+ +..+.++++||.|+|||.+.-..-....+.+ + +.-++.+|..-.
T Consensus 21 ~~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~--E---~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 21 GPHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG--E---NFLLVRLNGELQTDKIA 95 (408)
T ss_pred CCCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC--C---eEEEEEECccchhhHHH
Confidence 3344578888877777777765 6778899999999999998765544421111 0 222334432211
Q ss_pred ------------hhcccccchHHHHHHHHHHHHHH----cCCCeEEEEcchhhhhhC-CCCCChhhHHHhHhhhhh----
Q 046258 247 ------------VAGAKYRGEFEERLKAVLKEVEE----AEGKVILFIDEIHLVLGA-GRTEGSMDAANLFKPMLA---- 305 (900)
Q Consensus 247 ------------~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~iDEi~~l~~~-~~~~~~~~~~~~L~~~l~---- 305 (900)
..+.+..|.|.+.+..++..++. .++++|.++||+|...+- +|. .|..+++
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQt--------llYnlfDisqs 167 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQT--------LLYNLFDISQS 167 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhH--------HHHHHHHHHhh
Confidence 12345567778877777766653 233467777899988653 232 4444443
Q ss_pred -cCcEEEEEecCHHHHHHHhhccHHHHcccce--eeecCC-ChHHHHHHHHHHH
Q 046258 306 -RGQLRCIGATTLEEYRKYVEKDAAFERRFQQ--VYVAEP-SVPDTVSILRGLK 355 (900)
Q Consensus 306 -~g~irvI~att~~~~~~~~~~d~al~~Rf~~--i~i~~P-~~~e~~~ilr~l~ 355 (900)
+..+.+||.|++-+..++ .+....+||.. |++..+ +..+-..+.|.+.
T Consensus 168 ~r~Piciig~Ttrld~lE~--LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILEL--LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHH--HHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 567999999988776555 55788889963 555333 5666666766655
No 476
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.19 E-value=0.00035 Score=80.19 Aligned_cols=199 Identities=16% Similarity=0.241 Sum_probs=117.9
Q ss_pred hhHhhhhhcHHHHcCCCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHh----cCCCCCC
Q 046258 162 QALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIV----RGDVPSN 232 (900)
Q Consensus 162 ~~l~~~~~~l~~~a~~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~----~~~~p~~ 232 (900)
+.|.+....|...+ -.+.+-+|+.+...+-..+.. ....-+.+.|-||||||.+++.+...+. ++++|
T Consensus 380 S~l~~ara~Lhls~-vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p-- 456 (767)
T KOG1514|consen 380 SELSKARARLHLSA-VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP-- 456 (767)
T ss_pred hHHHHHHHHhHHhh-ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC--
Confidence 34555555555544 334578899999999887764 2233578889999999999999988664 46677
Q ss_pred CCCcEEEEEechhhh-------------hcccccch-HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHH
Q 046258 233 LADVRLIALDMGALV-------------AGAKYRGE-FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAAN 298 (900)
Q Consensus 233 l~~~~~~~~~~~~l~-------------~g~~~~g~-~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~ 298 (900)
...++++|.-.+. .|.+..+. .-+.++..|..-......+||+|||+|.|....|. -+.|
T Consensus 457 --~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd----VlYn 530 (767)
T KOG1514|consen 457 --KFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD----VLYN 530 (767)
T ss_pred --CccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH----HHHH
Confidence 5568888754432 12221111 11112222221113345789999999999876665 1223
Q ss_pred hHh-hhhhcCcEEEEEecCHHHH-HHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHH
Q 046258 299 LFK-PMLARGQLRCIGATTLEEY-RKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVA 374 (900)
Q Consensus 299 ~L~-~~l~~g~irvI~att~~~~-~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l 374 (900)
.+. +.+++.++.||+.+|...+ .+. ..+...+|+. .+.|.+.+..+...|+..-.... ..+.+++++.+
T Consensus 531 ~fdWpt~~~sKLvvi~IaNTmdlPEr~--l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielv 603 (767)
T KOG1514|consen 531 IFDWPTLKNSKLVVIAIANTMDLPERL--LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELV 603 (767)
T ss_pred HhcCCcCCCCceEEEEecccccCHHHH--hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHH
Confidence 332 2345677888877753332 122 2334445554 47787888888888886544332 12455555544
Q ss_pred HH
Q 046258 375 AQ 376 (900)
Q Consensus 375 ~~ 376 (900)
+.
T Consensus 604 ar 605 (767)
T KOG1514|consen 604 AR 605 (767)
T ss_pred HH
Confidence 43
No 477
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.18 E-value=3.1e-06 Score=85.22 Aligned_cols=60 Identities=30% Similarity=0.551 Sum_probs=38.8
Q ss_pred CCCCchHHHHHHHHHHcc---CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 180 PVIGRDEEIRRVVRILSR---RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
+++||+++++++...+.+ ..+++++|+|++|+|||++++.+...+.... .. ++.++|...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~------~~-~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG------GY-VISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---------EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC------CE-EEEEEEecc
Confidence 479999999999999932 4567799999999999999999998885541 22 566555443
No 478
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.16 E-value=1.6e-05 Score=81.23 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred CeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-cEEEEEecCHHH--HH------HHhhccHHHHcccceeeecCCC
Q 046258 273 KVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-QLRCIGATTLEE--YR------KYVEKDAAFERRFQQVYVAEPS 343 (900)
Q Consensus 273 ~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-~irvI~att~~~--~~------~~~~~d~al~~Rf~~i~i~~P~ 343 (900)
|.||||||+|.|. .+-+..|.+.++.. ...+|.++|+.. .+ .-.-..+.|..|+-.|..-..+
T Consensus 297 PGVLFIDEVhMLD--------iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhh--------hHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 3469999999983 44556777787754 356666666431 11 1123467888998888776777
Q ss_pred hHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 344 VPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 344 ~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
.++...|++.-.+. .++.++++++..+..+.
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIG 399 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhc
Confidence 88888887654443 67889999998888765
No 479
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.13 E-value=1.2e-05 Score=91.87 Aligned_cols=191 Identities=20% Similarity=0.230 Sum_probs=120.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc-------CCCCceeEeccccccccccc-----ccccCCCCCCcccccccchhHHH-
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF-------DDENLLVRIDMSEYMEQHSV-----SRLIGAPPGYVGHEEGGQLTEAV- 656 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~-------~~~~~~i~i~~~~~~~~~~~-----~~l~G~~~g~~g~~~~~~l~~~~- 656 (900)
.+.+.|-||||||.+...+-+.|. ...-.++.||.-.+...+.+ ..+.|...++.-.. ..|...+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al--~~L~~~f~ 501 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAAL--EALNFRFT 501 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHH--HHHHHhhc
Confidence 688999999999999998888775 23445777777666554433 22333332211110 0111111
Q ss_pred ---HhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 657 ---RRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 657 ---~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
.+.+.+|||+||.|.+-..-|+.|+.+++--.. .-+..+||+.+|.-- +
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~--------~~sKLvvi~IaNTmd--l------------------ 553 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL--------KNSKLVVIAIANTMD--L------------------ 553 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC--------CCCceEEEEeccccc--C------------------
Confidence 123568999999999988889999999985322 225677888777510 0
Q ss_pred HHHHhcccHHHHhccc-ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 734 QEVRKHFRPELLNRLD-EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 734 ~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
....|..-.-+|++ ..+.|.||+.+++.+|+...|... -.|..++++.+++.--.-...+|.-..++
T Consensus 554 --PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~----------~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 554 --PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL----------DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred --HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch----------hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 01112223335665 478999999999999999988733 35788888888775222122277777777
Q ss_pred HHHHHHHHHH
Q 046258 813 EKKVVTELSR 822 (900)
Q Consensus 813 ~~~i~~~l~~ 822 (900)
++++.-+--+
T Consensus 622 ~RA~Eia~~~ 631 (767)
T KOG1514|consen 622 RRAAEIAEER 631 (767)
T ss_pred HHHHHHhhhh
Confidence 6665544433
No 480
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=3.3e-05 Score=76.68 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=72.9
Q ss_pred HHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch----HHHHH------
Q 046258 191 VVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE----FEERL------ 260 (900)
Q Consensus 191 l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~----~~~~l------ 260 (900)
++..+....+.|.||+|||||||||+.+-||+.+..+-- .+...++.-+|-++-++|. ..|- +..+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld~c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLDPC 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhcc-ccCCchhhhhhhhhhcccc
Confidence 555567778899999999999999999999999866521 2236778888887766652 2331 11111
Q ss_pred ---HHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecC
Q 046258 261 ---KAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT 316 (900)
Q Consensus 261 ---~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att 316 (900)
...+..+++.. |-|+++|||.+ .+-.-.++.++..| +.+|++..
T Consensus 205 pk~~gmmmaIrsm~-PEViIvDEIGt----------~~d~~A~~ta~~~G-Vkli~TaH 251 (308)
T COG3854 205 PKAEGMMMAIRSMS-PEVIIVDEIGT----------EEDALAILTALHAG-VKLITTAH 251 (308)
T ss_pred hHHHHHHHHHHhcC-CcEEEEecccc----------HHHHHHHHHHHhcC-cEEEEeec
Confidence 12333444444 67799999933 23333555666655 78888764
No 481
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.00016 Score=79.27 Aligned_cols=165 Identities=17% Similarity=0.235 Sum_probs=103.3
Q ss_pred CCCCCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc-c
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG-A 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g-~ 250 (900)
+.-..+.||+.++..+..++.. .+...+.+.|-||||||.+..-+-...... .+....+++||.++... .
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-----SKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-----cccceeEEEeeccccchHH
Confidence 4556689999999999998865 566789999999999999998776655222 12445789999875210 0
Q ss_pred cc-------------cchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhh-----hhhcCcEEEE
Q 046258 251 KY-------------RGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKP-----MLARGQLRCI 312 (900)
Q Consensus 251 ~~-------------~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~-----~l~~g~irvI 312 (900)
-| .|.....+..+-.-..+.....|+++||+|.|....+. .|.. .+.+.++.+|
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~--------vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT--------VLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc--------eeeeehhcccCCcceeeee
Confidence 01 11111112222222334455789999999999866555 4433 3446677778
Q ss_pred EecCHHHHHHHhhccHHHHcccc----eeeecCCChHHHHHHHHHHH
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQ----QVYVAEPSVPDTVSILRGLK 355 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~----~i~i~~P~~~e~~~ilr~l~ 355 (900)
|..|.-+.... .=|.|..|.. .+.|.+++.++..+|+..-.
T Consensus 294 GiANslDlTdR--~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 294 GIANSLDLTDR--FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred eehhhhhHHHH--HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 87765543211 1133444443 35667778888888875433
No 482
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.08 E-value=2.3e-05 Score=82.97 Aligned_cols=169 Identities=24% Similarity=0.318 Sum_probs=101.8
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCC
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGA 639 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~ 639 (900)
++=.++|++.|++..+.. +.|.|+.||+|.+|+||++++|..|.... ..++.+.++.
T Consensus 10 lVlf~~ai~hi~ri~RvL-------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~---~~~~~i~~~~------------- 66 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL-------SQPRGHALLVGVGGSGRQSLARLAAFICG---YEVFQIEITK------------- 66 (268)
T ss_dssp ----HHHHHHHHHHHHHH-------CSTTEEEEEECTTTSCHHHHHHHHHHHTT---EEEE-TTTST-------------
T ss_pred eeeHHHHHHHHHHHHHHH-------cCCCCCeEEecCCCccHHHHHHHHHHHhc---cceEEEEeeC-------------
Confidence 444567888888777666 67889999999999999999998776662 2555555432
Q ss_pred CCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCc-eee----------------
Q 046258 640 PPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGR-TVD---------------- 698 (900)
Q Consensus 640 ~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~-~~~---------------- 698 (900)
+|.-.+-...+..++. +....|++|++-+-.++.++..+..+|.+|.+.+-... +.+
T Consensus 67 --~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~ 144 (268)
T PF12780_consen 67 --GYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGIS 144 (268)
T ss_dssp --TTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--
T ss_pred --CcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCC
Confidence 1111110112323322 34567899999888888888888888888876432210 000
Q ss_pred --------------cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHH
Q 046258 699 --------------FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRK 764 (900)
Q Consensus 699 --------------~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~ 764 (900)
..|..||++.++..+.+.. .-.--|+|++++ .+..|.+++.+.+..
T Consensus 145 ~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~-------------------~~~~fPaL~~~c-tIdW~~~W~~eaL~~ 204 (268)
T PF12780_consen 145 DSRESLYEFFIERVRKNLHIVLCMSPVGPNFRD-------------------RCRSFPALVNCC-TIDWFDPWPEEALLS 204 (268)
T ss_dssp SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCH-------------------HHHHHCCHHHHS-EEEEEES--HHHHHH
T ss_pred CchHHHHHHHHHHHHhheeEEEEECCCCchHHH-------------------HHHhCcchhccc-EEEeCCcCCHHHHHH
Confidence 1233333333332211100 112347889988 899999999999999
Q ss_pred HHHHHHHHH
Q 046258 765 VARLQMKDV 773 (900)
Q Consensus 765 I~~~~l~~~ 773 (900)
++..+|...
T Consensus 205 Va~~~l~~~ 213 (268)
T PF12780_consen 205 VANKFLSDI 213 (268)
T ss_dssp HHHHHCCHH
T ss_pred HHHHHHHhh
Confidence 999988743
No 483
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.08 E-value=4.5e-05 Score=81.98 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=123.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc-c-----
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ-H----- 631 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-~----- 631 (900)
..+.|.++.+.++++.++.+..|+... +. .++|.||+|+|||++++.|-+.+-.- ++..+..+.+.+. .
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~-kr--Il~L~GPvg~GKSsl~~~Lk~~le~y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEER-KR--ILLLLGPVGGGKSSLAELLKRGLEEY--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCcc-ce--EEEEECCCCCCHHHHHHHHHHHhheE--EEEEecCCccccChhhhCCH
Confidence 368999999999999999988777643 33 49999999999999999999887431 3333222111100 0
Q ss_pred ---------------------ccccc----cCCC---------------CC---Ccccccc----cchhH----------
Q 046258 632 ---------------------SVSRL----IGAP---------------PG---YVGHEEG----GQLTE---------- 654 (900)
Q Consensus 632 ---------------------~~~~l----~G~~---------------~g---~~g~~~~----~~l~~---------- 654 (900)
...+| -|.- .| +--.++. ..|++
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~ 215 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEY 215 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhh
Confidence 00000 0000 00 0000000 11221
Q ss_pred ------------HHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeec-CCCceeecCCeEEEEccCCCcHHHhcccCC
Q 046258 655 ------------AVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTD-GQGRTVDFRNTVIIMTSNLGAEHLLSGMMG 721 (900)
Q Consensus 655 ------------~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d-~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 721 (900)
.+..+.++++=|=|+-|.+.+++..||.+.++|.+.- .....++ -+.+||+.||.. ++.+
T Consensus 216 s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~-~D~liiAhsNe~--E~~~---- 288 (358)
T PF08298_consen 216 SESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIP-FDELIIAHSNEE--EYNK---- 288 (358)
T ss_pred ccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccc-cceeEEecCCHH--HHHH----
Confidence 2222233455555777888999999999999998875 3333344 367899999942 1111
Q ss_pred ccchHHHHHHHHHHHHhcccHHHHhcccceeecCC-CCHHHHHHHHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHH
Q 046258 722 KVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDP-LSHEQLRKVARLQMKDVAIRLAERGV-ALAVTDAALDIVLA 796 (900)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~p-l~~e~~~~I~~~~l~~~~~~~~~~~~-~~~~~~~a~~~l~~ 796 (900)
-......++|.+|+ .+|.++. ++-.+=.+|-++.+. +..+ ...+.|.+++.++.
T Consensus 289 -------------f~~~~~~eAf~DRi-~~I~VPY~L~~s~E~kIY~k~~~-------~s~l~~~h~aP~~L~~aA~ 344 (358)
T PF08298_consen 289 -------------FKNNKNNEAFKDRI-EVIKVPYCLRVSEEVKIYEKLIG-------KSDLRDAHIAPHTLEMAAR 344 (358)
T ss_pred -------------Hhccccchhhhhhe-EEEeccccCCHHHHHHHHHHHhh-------hccccccccCchHHHHHHH
Confidence 00223468999999 8888888 555655667666665 2121 45778887776664
No 484
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.06 E-value=2.2e-05 Score=89.13 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=106.4
Q ss_pred CCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh
Q 046258 181 VIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
+.|.++..+-++-.|-. +..-||||+|.||||||-+.+.+|+.+.++.+-.. +|..- ..+.+
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSG-kGsSa-----vGLTa 504 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSG-KGSSA-----VGLTA 504 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecC-Cccch-----hccee
Confidence 56677766666555532 23368999999999999999999999877643210 01000 01111
Q ss_pred cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---------------CcEEEEE
Q 046258 249 GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---------------GQLRCIG 313 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---------------g~irvI~ 313 (900)
+....++..+.+ ---+.+--+++| |-.|||+|.|..+.++ .|.++|+. .+.-||+
T Consensus 505 yVtrd~dtkqlV-LesGALVLSD~G-iCCIDEFDKM~dStrS--------vLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 505 YVTKDPDTRQLV-LESGALVLSDNG-ICCIDEFDKMSDSTRS--------VLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred eEEecCccceee-eecCcEEEcCCc-eEEchhhhhhhHHHHH--------HHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 100000000000 000111123544 5999999999766555 77777763 2456788
Q ss_pred ecCHHH--------HHHHhhccHHHHcccceeee--cCCChHHHHHHHHHHHHHHhcccC----cccChhHHHHHHHHhh
Q 046258 314 ATTLEE--------YRKYVEKDAAFERRFQQVYV--AEPSVPDTVSILRGLKEKYEGHHG----VRIQDRALVVAAQLSA 379 (900)
Q Consensus 314 att~~~--------~~~~~~~d~al~~Rf~~i~i--~~P~~~e~~~ilr~l~~~~~~~~~----v~i~~eal~~l~~~s~ 379 (900)
+.|+.. ..+-+.+.|.|.+||+.|++ +.|+...-..+-.++...|.+... .-++...+...+.++.
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yAr 654 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYAR 654 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHh
Confidence 877432 12235678999999998664 666655445566777776644221 1133334444455554
Q ss_pred hhccCCCCh
Q 046258 380 RYITGRHLP 388 (900)
Q Consensus 380 ~~~~~~~~p 388 (900)
..+.....|
T Consensus 655 k~i~p~l~~ 663 (804)
T KOG0478|consen 655 KNIHPALSP 663 (804)
T ss_pred ccCCccccH
Confidence 444433333
No 485
>PRK09183 transposase/IS protein; Provisional
Probab=98.04 E-value=1.5e-05 Score=84.45 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
...|++|+||||||||+++.+|+...... +..+..+++..+..... .......+...+... .....+|+|
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~-------G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~--~~~~dlLii 170 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA-------GIKVRFTTAADLLLQLS-TAQRQGRYKTTLQRG--VMAPRLLII 170 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHH--hcCCCEEEE
Confidence 46789999999999999999999876443 44577777766542110 000001122233221 122457999
Q ss_pred cchhhhhhCCCCCChhhHHHhHhhhh----hcCcEEEEEecC--HHHHHHHh
Q 046258 279 DEIHLVLGAGRTEGSMDAANLFKPML----ARGQLRCIGATT--LEEYRKYV 324 (900)
Q Consensus 279 DEi~~l~~~~~~~~~~~~~~~L~~~l----~~g~irvI~att--~~~~~~~~ 324 (900)
||++.+... .+..+.|.+++ +++. +|.+|| ..++...+
T Consensus 171 Ddlg~~~~~------~~~~~~lf~li~~r~~~~s--~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 171 DEIGYLPFS------QEEANLFFQVIAKRYEKGS--MILTSNLPFGQWDQTF 214 (259)
T ss_pred cccccCCCC------hHHHHHHHHHHHHHHhcCc--EEEecCCCHHHHHHHh
Confidence 999765322 12233444444 3443 566664 34444443
No 486
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.01 E-value=6.6e-05 Score=69.49 Aligned_cols=94 Identities=29% Similarity=0.516 Sum_probs=62.2
Q ss_pred CCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEE
Q 046258 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVV 664 (900)
Q Consensus 585 ~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vl 664 (900)
.+| ++|++|-||||||+++..||+.+ .+..|+||.+..... + |-||++. +...
T Consensus 6 ~~P--NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn~---l------~~gyDE~-----------y~c~ 58 (176)
T KOG3347|consen 6 ERP--NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKENN---L------YEGYDEE-----------YKCH 58 (176)
T ss_pred cCC--CEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhhhc---c------hhccccc-----------ccCc
Confidence 355 59999999999999999999887 678899998765432 1 3455542 3445
Q ss_pred EEccccccCHHHHHHHHHHhh-CCeeecCCCcee---ecCCeEEEEccCC
Q 046258 665 LFDEVEKAHISVFNTLLQVLD-DGRLTDGQGRTV---DFRNTVIIMTSNL 710 (900)
Q Consensus 665 llDEidk~~~~~~~~Ll~~ld-~g~~~d~~g~~~---~~~~~~iI~tsn~ 710 (900)
+||| ..+++.|-..|. .|.+.|-.|..+ ...+.+|++++-.
T Consensus 59 i~DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~ 103 (176)
T KOG3347|consen 59 ILDE-----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPN 103 (176)
T ss_pred cccH-----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecCc
Confidence 7776 345666655554 455666544322 2236677777753
No 487
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=1.5e-05 Score=86.27 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchH-HH
Q 046258 184 RDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEF-EE 258 (900)
Q Consensus 184 ~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~-~~ 258 (900)
+...+.....++.. ....+++|+||+|||||+++.+||+.+...+. .+..+.++.++..-+ ..+ .+
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-------~v~~~~~~~l~~~lk--~~~~~~ 206 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-------SSTLLHFPEFIRELK--NSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------CEEEEEHHHHHHHHH--HHHhcC
Confidence 33444444555543 24568999999999999999999999976543 367777776543111 110 01
Q ss_pred HHHHHHHHHHHcCCCeEEEEcchhh
Q 046258 259 RLKAVLKEVEEAEGKVILFIDEIHL 283 (900)
Q Consensus 259 ~l~~~~~~~~~~~~~~iL~iDEi~~ 283 (900)
.+...+..+.. --+|+|||+..
T Consensus 207 ~~~~~l~~l~~---~dlLiIDDiG~ 228 (306)
T PRK08939 207 SVKEKIDAVKE---APVLMLDDIGA 228 (306)
T ss_pred cHHHHHHHhcC---CCEEEEecCCC
Confidence 12333444443 33799999954
No 488
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.99 E-value=0.00077 Score=82.26 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCcHHHHH-HHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHH---HHHHc---
Q 046258 198 RTKNNPVLIGEPGVGKTAVV-EGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLK---EVEEA--- 270 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la-~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~---~~~~~--- 270 (900)
.+.+.++++||||+|||.+. -+|-.++ .+.++.+|.+.-... +..+..+-. .....
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~T-------~s~ls~Ler~t~yy~~tg~~ 1554 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTMT-------PSKLSVLERETEYYPNTGVV 1554 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccCC-------HHHHHHHHhhceeeccCCeE
Confidence 46678999999999999975 3343333 456788876543211 001111100 01110
Q ss_pred -------CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------cEEEEEecCHHHHHHHhhccHH
Q 046258 271 -------EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------QLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 271 -------~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~irvI~att~~~~~~~~~~d~a 329 (900)
-...|||.|||. |+. +..-++.+..-.|++++++. ++.+.|++|+........-...
T Consensus 1555 ~l~PK~~vK~lVLFcDeIn-Lp~-~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1555 RLYPKPVVKDLVLFCDEIN-LPY-GFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEccCcchhheEEEeeccC-Ccc-ccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 113479999998 443 32324444444555666642 4678888877653222222334
Q ss_pred HHcccceeeecCCChHHHHHHHHHHH
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRGLK 355 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~l~ 355 (900)
|.++--.+.+..|.......|...+.
T Consensus 1633 f~r~~v~vf~~ype~~SL~~Iyea~l 1658 (3164)
T COG5245 1633 FIRKPVFVFCCYPELASLRNIYEAVL 1658 (3164)
T ss_pred HhcCceEEEecCcchhhHHHHHHHHH
Confidence 44443346678887776666665443
No 489
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.99 E-value=0.00048 Score=78.21 Aligned_cols=116 Identities=22% Similarity=0.374 Sum_probs=71.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc--CCCCceeEecccccccc-----cccccccCCCCCCcccccccchhHHHHh-CC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF--DDENLLVRIDMSEYMEQ-----HSVSRLIGAPPGYVGHEEGGQLTEAVRR-RP 660 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~--~~~~~~i~i~~~~~~~~-----~~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~ 660 (900)
..++|+||+|||||+++..||..+. ..+.++..+++..+... ....+..|-|. ++.+.. ..+...+.. ..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-~~~~~~-~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-EVVYDP-KELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-EccCCH-HhHHHHHHHhCC
Confidence 4799999999999999998887764 33556777887765321 11133444322 222322 334455543 36
Q ss_pred CeEEEEccccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 661 YSVVLFDEVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 661 ~~vlllDEidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
+.+||+|-....+. .....|.++++... ....++++++++.+...+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~---------~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSG---------EPIDVYLVLSATTKYEDL 347 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccC---------CCCeEEEEEECCCCHHHH
Confidence 78999998876544 45567777776210 113567888888775444
No 490
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.99 E-value=0.00048 Score=79.82 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.0
Q ss_pred hCCCeEEEEccc-cccCHHHHHHHHHHhhC
Q 046258 658 RRPYSVVLFDEV-EKAHISVFNTLLQVLDD 686 (900)
Q Consensus 658 ~~~~~vlllDEi-dk~~~~~~~~Ll~~ld~ 686 (900)
..+..||+|||- +.++.+.+.+|-..|.+
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence 456789999998 57999999999999984
No 491
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=9.9e-05 Score=74.84 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=94.0
Q ss_pred eEEEEeccCC-chHHHHHHHHHHHhcCCCCceeEeccccccccccccccc--CCCCCCcccccccchhHHHHh----CCC
Q 046258 589 GSFLFLGPTG-VGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI--GAPPGYVGHEEGGQLTEAVRR----RPY 661 (900)
Q Consensus 589 ~~~ll~Gp~G-tGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~--G~~~g~~g~~~~~~l~~~~~~----~~~ 661 (900)
...||.|..+ +||..++..+++.++... ++++...+-+.+..-- +.....++.+..+.+.+.+.. .++
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~ 90 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGY 90 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCc
Confidence 3599999998 999999999999987631 3333322211111000 000112333333444444443 356
Q ss_pred eEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR 741 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (900)
.|++++++|++.....|+||+.||+ ...+++||++|+. ...+.
T Consensus 91 KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~--------------------------~~~LL 133 (263)
T PRK06581 91 KVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSR--------------------------AASII 133 (263)
T ss_pred EEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCC--------------------------hhhCc
Confidence 8999999999999999999999998 4577888887665 35688
Q ss_pred HHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 742 PELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 742 ~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
|-+++|| ..+.|..+......++...++
T Consensus 134 pTIrSRC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 134 STIRSRC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred hhHhhce-EEEeCCCCCHHHHHHHHHHhc
Confidence 9999999 889999888866655555433
No 492
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=0.00022 Score=77.34 Aligned_cols=171 Identities=12% Similarity=0.144 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh------------c
Q 046258 184 RDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------------G 249 (900)
Q Consensus 184 ~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------g 249 (900)
|+.+++++.+.|.. ....-+.|+|++|+|||++|..+++.......- +. ++.++++.-.. +
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f----~~-v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF----DG-VIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC----TE-EEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc----cc-cccccccccccccccccccccccc
Confidence 57899999999988 444558899999999999999999774322111 11 34444332100 1
Q ss_pred cc-----ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh--cCcEEEEEecCHHHHHH
Q 046258 250 AK-----YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA--RGQLRCIGATTLEEYRK 322 (900)
Q Consensus 250 ~~-----~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~irvI~att~~~~~~ 322 (900)
.. .....+.....+...+. +.+++|+||+++... ....+...+. ....++|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~kilvTTR~~~v-- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLK--DKRCLLVLDDVWDEE----------DLEELREPLPSFSSGSKILVTTRDRSV-- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHC--CTSEEEEEEEE-SHH----------HH-------HCHHSS-EEEEEESCGGG--
T ss_pred ccccccccccccccccccchhhhc--cccceeeeeeecccc----------ccccccccccccccccccccccccccc--
Confidence 11 12233333333333332 348999999996553 1112233332 235788888854332
Q ss_pred HhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHh
Q 046258 323 YVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLS 378 (900)
Q Consensus 323 ~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s 378 (900)
-..+......+.+...+.++..+++......-.. ......++....++..+
T Consensus 142 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c 192 (287)
T PF00931_consen 142 ----AGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKC 192 (287)
T ss_dssp ----GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHT
T ss_pred ----cccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 1222222445777777888888888665433210 01112234445566655
No 493
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.91 E-value=0.0017 Score=79.23 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH--hcC--CCCCCCCCcEEEE-----EechhhhhcccccchHHHHHHHHHHHHHHcC
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI--VRG--DVPSNLADVRLIA-----LDMGALVAGAKYRGEFEERLKAVLKEVEEAE 271 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l--~~~--~~p~~l~~~~~~~-----~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~ 271 (900)
..++|+||+|+||||+.+.++... ... .+|..- +..+-. .+.+.-..-......|...++.+...+....
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~-~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~ 401 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE-HSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTT 401 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc-cccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 468999999999999999998762 222 334211 111111 1111100000112344444555555555555
Q ss_pred CCeEEEEcchhhhhhCCCCCCh-hhHHHhHhhhhhcCcEEEEEecCHHHHHHH
Q 046258 272 GKVILFIDEIHLVLGAGRTEGS-MDAANLFKPMLARGQLRCIGATTLEEYRKY 323 (900)
Q Consensus 272 ~~~iL~iDEi~~l~~~~~~~~~-~~~~~~L~~~l~~g~irvI~att~~~~~~~ 323 (900)
++.++++||+.. +..... ..++..+...+......+|.+|...+...+
T Consensus 402 ~~sLvLlDE~g~----GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 402 ENSLVLFDELGA----GTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCcEEEecCCCC----CCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 678999999822 111111 122233344444445678888876665443
No 494
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.90 E-value=3.3e-05 Score=83.84 Aligned_cols=158 Identities=18% Similarity=0.298 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHH--hcCCCCceeEecccccccccc----cccccC
Q 046258 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQ--LFDDENLLVRIDMSEYMEQHS----VSRLIG 638 (900)
Q Consensus 565 ~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~--l~~~~~~~i~i~~~~~~~~~~----~~~l~G 638 (900)
.-+++|.+.+... ..+...+.++|++|+|||+||+.+++. ....-...+-++++....... +...++
T Consensus 3 ~~~~~l~~~L~~~-------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDN-------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTT-------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCC-------CCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 3456666666543 244557999999999999999999977 333233445566654322211 122233
Q ss_pred CCCCCc-ccccc----cchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcH
Q 046258 639 APPGYV-GHEEG----GQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAE 713 (900)
Q Consensus 639 ~~~g~~-g~~~~----~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~ 713 (900)
....-. ..... ..+.+.+.. ...+|+||+++... .++.+...+-. .-.++.+|+||....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~--~~~~l~~~~~~-----------~~~~~kilvTTR~~~- 140 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEE--DLEELREPLPS-----------FSSGSKILVTTRDRS- 140 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHH--HH-------HC-----------HHSS-EEEEEESCGG-
T ss_pred ccccccccccccccccccchhhhcc-ccceeeeeeecccc--ccccccccccc-----------ccccccccccccccc-
Confidence 321111 11111 122233333 47999999998654 33334443322 113567888886521
Q ss_pred HHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHH
Q 046258 714 HLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
+...+ +.-+..+...+|+.++-.+++.....
T Consensus 141 --------------------------v~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 141 --------------------------VAGSL-GGTDKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp --------------------------GGTTH-HSCEEEEECSS--HHHHHHHHHHHHT
T ss_pred --------------------------ccccc-cccccccccccccccccccccccccc
Confidence 11111 11135677888888887777766643
No 495
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.90 E-value=1.5e-05 Score=101.03 Aligned_cols=147 Identities=31% Similarity=0.417 Sum_probs=98.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc------cchhHHHHhCCCeE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG------GQLTEAVRRRPYSV 663 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~------~~l~~~~~~~~~~v 663 (900)
++||.||+|+|||.+++.+|+.+.. ++++|+-.+. .+..+++|. |+--..| +.+.++++ .+.+
T Consensus 442 pillqG~tssGKtsii~~la~~~g~---~~vrinnheh---td~qeyig~---y~~~~~g~l~freg~LV~Alr--~G~~ 510 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGK---NIVRINNHEH---TDLQEYIGT---YVADDNGDLVFREGVLVQALR--NGDW 510 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhcc---Cceehhcccc---chHHHHHHh---hhcCCCCCeeeehhHHHHHHH--hCCE
Confidence 3999999999999999999999955 8999998773 444566663 2222222 34445555 5789
Q ss_pred EEEccccccCHHHHHHHHHHhhC-CeeecCCC-cee-ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcc
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDD-GRLTDGQG-RTV-DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHF 740 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~-g~~~d~~g-~~~-~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (900)
++|||++.++.+++++|.+++++ ..+.-..+ +.+ ...+.++.+|-|.+.-. .. .+.+
T Consensus 511 ~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y-~g-------------------rk~l 570 (1856)
T KOG1808|consen 511 IVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTY-GG-------------------RKIL 570 (1856)
T ss_pred EEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcccc-ch-------------------hhhh
Confidence 99999999999999999999997 44432222 222 22345566676664210 00 3445
Q ss_pred cHHHHhcccceeecCCCCHHHHHHHHHH
Q 046258 741 RPELLNRLDEIVVFDPLSHEQLRKVARL 768 (900)
Q Consensus 741 ~~~ll~R~~~~i~f~pl~~e~~~~I~~~ 768 (900)
..+|++|+ ..+.|....++++..|...
T Consensus 571 sRa~~~rf-~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 571 SRALRNRF-IELHFDDIGEEELEEILEH 597 (1856)
T ss_pred hhcccccc-hhhhhhhcCchhhhhhhcc
Confidence 66777887 5566666666666666544
No 496
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.89 E-value=4e-05 Score=84.34 Aligned_cols=139 Identities=18% Similarity=0.257 Sum_probs=83.3
Q ss_pred CChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHH
Q 046258 532 VGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQ 611 (900)
Q Consensus 532 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~ 611 (900)
++.++-.+++-+..|+.+..+... ..+..+...+.-. .+. .++++.||+|||||++|.+|+..
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r---------~k~~~L~rl~~fv-------e~~-~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEAR---------QKLLLLARLLPLV-------EPN-YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChH---------HHHHHHHhhHHHH-------hcC-CcEEEECCCCCCHHHHHHHHhHH
Confidence 455556666667777777666432 2233333332222 111 37999999999999999998876
Q ss_pred h-cCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hCCCeEEEEccccccC----HHHHHHHHHHhh
Q 046258 612 L-FDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RRPYSVVLFDEVEKAH----ISVFNTLLQVLD 685 (900)
Q Consensus 612 l-~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~~vlllDEidk~~----~~~~~~Ll~~ld 685 (900)
. ..++ .+ ...+.|+..-. +..+. -....+|+|||+..++ .+..+.|...|+
T Consensus 233 ~a~~sG---------~f---~T~a~Lf~~L~-----------~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMe 289 (449)
T TIGR02688 233 VILISG---------GT---ITVAKLFYNIS-----------TRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYME 289 (449)
T ss_pred HHHHcC---------Cc---CcHHHHHHHHH-----------HHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHH
Confidence 2 2111 11 11122222100 01111 1245799999999854 447788999999
Q ss_pred CCeeecCCCceeecCCeEEEEccCCCc
Q 046258 686 DGRLTDGQGRTVDFRNTVIIMTSNLGA 712 (900)
Q Consensus 686 ~g~~~d~~g~~~~~~~~~iI~tsn~~~ 712 (900)
+|.|+.+... -..++-+++..|.+.
T Consensus 290 sg~fsRG~~~--~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 290 SGSFTRGDET--KSSDASFVFLGNVPL 314 (449)
T ss_pred hCceecccee--eeeeeEEEEEcccCC
Confidence 9999875532 235777888888753
No 497
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.87 E-value=5.1e-05 Score=83.89 Aligned_cols=110 Identities=26% Similarity=0.438 Sum_probs=68.2
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc-c-ccccccCCCCCCcccccccchhHHHH--hCCCe
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ-H-SVSRLIGAPPGYVGHEEGGQLTEAVR--RRPYS 662 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~-~-~~~~l~G~~~g~~g~~~~~~l~~~~~--~~~~~ 662 (900)
+...+.|+||+|+|||.|.-.....+.... -.++...+|+.. | ....+.|. ...+....+ .....
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~--k~R~HFh~Fm~~vh~~l~~~~~~---------~~~l~~va~~l~~~~~ 129 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR--KRRVHFHEFMLDVHSRLHQLRGQ---------DDPLPQVADELAKESR 129 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc--cccccccHHHHHHHHHHHHHhCC---------CccHHHHHHHHHhcCC
Confidence 334899999999999999999998885522 234444444322 1 11122211 122333222 23446
Q ss_pred EEEEccccccCHH---HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccC
Q 046258 663 VVLFDEVEKAHIS---VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM 720 (900)
Q Consensus 663 vlllDEidk~~~~---~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 720 (900)
||+|||++--+.. ++..|+..|=+ ..+++|+|||..++++.....
T Consensus 130 lLcfDEF~V~DiaDAmil~rLf~~l~~-------------~gvvlVaTSN~~P~~Ly~~gl 177 (362)
T PF03969_consen 130 LLCFDEFQVTDIADAMILKRLFEALFK-------------RGVVLVATSNRPPEDLYKNGL 177 (362)
T ss_pred EEEEeeeeccchhHHHHHHHHHHHHHH-------------CCCEEEecCCCChHHHcCCcc
Confidence 9999999765443 45555555532 468899999999999886443
No 498
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00042 Score=73.64 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC------CCCcEEEEEechhhhhcccccchHH
Q 046258 185 DEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN------LADVRLIALDMGALVAGAKYRGEFE 257 (900)
Q Consensus 185 ~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~------l~~~~~~~~~~~~l~~g~~~~g~~~ 257 (900)
+...+++...+.+..-.| .||+||+|+||+++|..+|+.+.....|.. ...-.++.+... |.. ..-..
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~----~~~-~~I~i 77 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ----GKG-RLHSI 77 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----CCC-CcCcH
Confidence 455677888887755555 678899999999999999999865332210 001112222111 000 00013
Q ss_pred HHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEec-CHHHHHHHhhccHHHH
Q 046258 258 ERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGAT-TLEEYRKYVEKDAAFE 331 (900)
Q Consensus 258 ~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~at-t~~~~~~~~~~d~al~ 331 (900)
+.++.+...+... ++.-|++||++|.|.. +++|.|+..|++. .+.+|..| +... .-|.++
T Consensus 78 dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~--------~AaNaLLK~LEEPp~~~~fiL~~~~~~~------ll~TI~ 143 (290)
T PRK05917 78 ETPRAIKKQIWIHPYESPYKIYIIHEADRMTL--------DAISAFLKVLEDPPQHGVIILTSAKPQR------LPPTIR 143 (290)
T ss_pred HHHHHHHHHHhhCccCCCceEEEEechhhcCH--------HHHHHHHHHhhcCCCCeEEEEEeCChhh------CcHHHH
Confidence 3445555554432 3345899999998854 4677999999753 45555555 5443 678999
Q ss_pred cccceeeecCC
Q 046258 332 RRFQQVYVAEP 342 (900)
Q Consensus 332 ~Rf~~i~i~~P 342 (900)
+|++.+.+..+
T Consensus 144 SRcq~~~~~~~ 154 (290)
T PRK05917 144 SRSLSIHIPME 154 (290)
T ss_pred hcceEEEccch
Confidence 99998888543
No 499
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.83 E-value=0.00023 Score=82.27 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=34.5
Q ss_pred CCCCchHHHHHHHHHHccC----C-CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 180 PVIGRDEEIRRVVRILSRR----T-KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~----~-~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
++....+.+..|..+|... . ..-+||+|||||||||+++.||+.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555677778888877642 1 2236778999999999999999998
No 500
>PHA00729 NTP-binding motif containing protein
Probab=97.83 E-value=4.3e-05 Score=77.83 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
+++|+|+||||||+||.+|++.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999874
Done!