Query 046258
Match_columns 900
No_of_seqs 644 out of 5162
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 1E-101 5E-106 955.0 80.2 834 1-849 1-847 (854)
2 3pxi_A Negative regulator of g 100.0 3E-92 1E-96 863.5 67.2 736 1-852 1-755 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 3.1E-88 1.1E-92 830.0 67.0 719 6-851 2-747 (758)
4 3pxg_A Negative regulator of g 100.0 2.8E-57 9.5E-62 521.7 40.3 438 1-464 1-444 (468)
5 4fcw_A Chaperone protein CLPB; 100.0 5.8E-36 2E-40 327.8 27.8 294 554-849 13-306 (311)
6 3cf2_A TER ATPase, transitiona 100.0 6.6E-37 2.3E-41 364.8 21.2 458 177-826 202-705 (806)
7 3m6a_A ATP-dependent protease 100.0 5E-31 1.7E-35 307.9 22.7 349 470-883 7-441 (543)
8 1ypw_A Transitional endoplasmi 100.0 1.3E-30 4.3E-35 317.6 9.3 457 176-823 201-702 (806)
9 3hws_A ATP-dependent CLP prote 99.9 8E-28 2.7E-32 268.6 8.9 253 556-823 13-326 (363)
10 3dzd_A Transcriptional regulat 99.9 2.5E-25 8.5E-30 247.2 16.1 259 526-817 97-359 (368)
11 1ojl_A Transcriptional regulat 99.9 4E-25 1.4E-29 239.5 17.0 227 559-817 3-233 (304)
12 1ny5_A Transcriptional regulat 99.9 9.8E-25 3.4E-29 244.5 18.2 262 525-818 96-369 (387)
13 2bjv_A PSP operon transcriptio 99.9 3.9E-24 1.3E-28 228.0 18.1 228 557-817 5-238 (265)
14 1um8_A ATP-dependent CLP prote 99.9 2.8E-24 9.5E-29 241.2 14.9 265 558-840 21-356 (376)
15 1ofh_A ATP-dependent HSL prote 99.9 2.1E-22 7.1E-27 219.8 16.4 243 557-840 14-290 (310)
16 1g41_A Heat shock protein HSLU 99.9 2.9E-22 1E-26 223.8 17.7 153 660-839 250-423 (444)
17 1khy_A CLPB protein; alpha hel 99.9 4.3E-22 1.5E-26 192.1 16.1 144 1-146 1-145 (148)
18 3fh2_A Probable ATP-dependent 99.9 7.5E-22 2.5E-26 189.5 17.4 141 1-145 2-144 (146)
19 3fes_A ATP-dependent CLP endop 99.9 1.4E-21 4.8E-26 187.2 15.2 138 2-144 4-143 (145)
20 2y1q_A CLPC N-domain, negative 99.9 1.6E-21 5.6E-26 188.4 15.4 142 1-147 1-144 (150)
21 1jbk_A CLPB protein; beta barr 99.9 2.5E-21 8.4E-26 195.0 16.0 191 161-351 2-194 (195)
22 4b4t_J 26S protease regulatory 99.9 6E-21 2E-25 209.4 19.6 198 176-401 145-368 (405)
23 2p65_A Hypothetical protein PF 99.8 1E-20 3.5E-25 189.6 16.5 183 161-343 2-187 (187)
24 4b4t_I 26S protease regulatory 99.8 2.3E-20 8E-25 204.9 17.3 197 176-401 179-402 (437)
25 4b4t_H 26S protease regulatory 99.8 4.8E-20 1.7E-24 204.4 19.7 198 176-401 206-429 (467)
26 4b4t_M 26S protease regulatory 99.8 3.5E-20 1.2E-24 206.7 18.3 198 176-401 178-401 (434)
27 3zri_A CLPB protein, CLPV; cha 99.8 1.9E-20 6.5E-25 182.7 13.3 138 1-144 20-163 (171)
28 4b4t_L 26S protease subunit RP 99.8 7.3E-20 2.5E-24 204.4 17.9 198 176-401 178-401 (437)
29 3k1j_A LON protease, ATP-depen 99.8 2.7E-20 9.2E-25 220.9 12.7 298 551-884 34-490 (604)
30 4b4t_K 26S protease regulatory 99.8 3.2E-19 1.1E-23 199.0 20.3 198 176-401 169-393 (428)
31 3syl_A Protein CBBX; photosynt 99.8 1.6E-19 5.6E-24 196.8 17.7 213 556-825 29-268 (309)
32 3eie_A Vacuolar protein sortin 99.8 1.4E-18 4.8E-23 190.2 19.8 196 177-399 16-232 (322)
33 3pfi_A Holliday junction ATP-d 99.8 2E-18 6.8E-23 190.7 18.8 202 552-817 23-232 (338)
34 1xwi_A SKD1 protein; VPS4B, AA 99.8 4.4E-18 1.5E-22 185.8 19.5 197 177-399 10-227 (322)
35 4b4t_J 26S protease regulatory 99.8 1.3E-18 4.4E-23 191.0 15.1 199 556-821 146-371 (405)
36 2qp9_X Vacuolar protein sortin 99.8 4.4E-18 1.5E-22 188.4 19.7 199 176-401 48-267 (355)
37 1k6k_A ATP-dependent CLP prote 99.8 3E-18 1E-22 164.0 13.8 132 6-141 2-138 (143)
38 3vfd_A Spastin; ATPase, microt 99.8 6.7E-18 2.3E-22 189.9 18.8 197 176-399 112-330 (389)
39 3d8b_A Fidgetin-like protein 1 99.8 1.6E-17 5.4E-22 184.4 21.0 196 177-399 82-299 (357)
40 4b4t_I 26S protease regulatory 99.7 4E-18 1.4E-22 187.3 13.4 199 556-821 180-405 (437)
41 4b4t_H 26S protease regulatory 99.7 1.4E-17 4.7E-22 184.8 16.7 199 557-821 208-432 (467)
42 3n70_A Transport activator; si 99.7 5E-18 1.7E-22 162.9 11.2 143 559-758 2-145 (145)
43 3b9p_A CG5977-PA, isoform A; A 99.7 4.7E-17 1.6E-21 176.2 19.8 196 177-399 19-237 (297)
44 3pxi_A Negative regulator of g 99.7 2.8E-16 9.5E-21 191.9 28.3 177 179-378 491-703 (758)
45 4b4t_M 26S protease regulatory 99.7 5.7E-18 2E-22 188.9 11.9 200 556-821 179-404 (434)
46 2zan_A Vacuolar protein sortin 99.7 2.3E-17 8E-22 188.1 17.0 198 176-399 131-349 (444)
47 4b4t_L 26S protease subunit RP 99.7 1.7E-17 5.7E-22 185.4 15.3 199 556-820 179-403 (437)
48 3eie_A Vacuolar protein sortin 99.7 4.1E-17 1.4E-21 178.6 17.4 210 557-826 17-242 (322)
49 4b4t_K 26S protease regulatory 99.7 2.2E-17 7.4E-22 184.2 14.8 199 556-821 170-396 (428)
50 3cf2_A TER ATPase, transitiona 99.7 7.3E-18 2.5E-22 201.2 11.3 197 177-401 475-697 (806)
51 4akg_A Glutathione S-transfera 99.7 1.7E-15 5.7E-20 200.7 34.6 142 199-359 1266-1435(2695)
52 3h4m_A Proteasome-activating n 99.7 1.3E-16 4.3E-21 171.7 19.7 199 177-403 15-239 (285)
53 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.5E-16 5.2E-21 173.6 20.3 210 558-826 12-237 (322)
54 1hqc_A RUVB; extended AAA-ATPa 99.7 3.3E-17 1.1E-21 179.7 14.7 200 552-815 6-214 (324)
55 3cf0_A Transitional endoplasmi 99.7 3.9E-17 1.3E-21 176.9 15.0 197 177-401 13-235 (301)
56 3syl_A Protein CBBX; photosynt 99.7 2.7E-16 9.3E-21 171.2 21.6 188 180-380 32-238 (309)
57 3hu3_A Transitional endoplasmi 99.7 7.5E-17 2.6E-21 184.8 17.5 199 176-402 201-422 (489)
58 2qp9_X Vacuolar protein sortin 99.7 1.2E-16 4.1E-21 176.9 17.4 208 558-825 51-274 (355)
59 3pvs_A Replication-associated 99.7 1.3E-16 4.5E-21 181.1 17.9 191 176-402 23-222 (447)
60 3pvs_A Replication-associated 99.7 1.9E-17 6.5E-22 188.0 10.7 195 552-817 20-220 (447)
61 2c9o_A RUVB-like 1; hexameric 99.7 1.4E-17 4.7E-22 191.0 9.7 102 177-290 35-144 (456)
62 2qz4_A Paraplegin; AAA+, SPG7, 99.7 4.3E-16 1.5E-20 165.2 20.1 198 177-401 4-228 (262)
63 3t15_A Ribulose bisphosphate c 99.7 4.3E-16 1.5E-20 167.8 17.7 172 569-796 18-213 (293)
64 2zan_A Vacuolar protein sortin 99.7 5.7E-16 2E-20 176.6 18.7 211 557-826 133-359 (444)
65 2ce7_A Cell division protein F 99.7 6.7E-16 2.3E-20 175.3 18.5 197 177-402 14-236 (476)
66 3cf0_A Transitional endoplasmi 99.7 3.4E-16 1.2E-20 169.5 15.4 206 558-827 15-244 (301)
67 1ojl_A Transcriptional regulat 99.7 7.4E-17 2.5E-21 174.5 9.7 182 180-378 3-216 (304)
68 3u61_B DNA polymerase accessor 99.7 3.9E-16 1.3E-20 171.2 15.1 196 551-816 19-220 (324)
69 1r6b_X CLPA protein; AAA+, N-t 99.7 2.9E-14 9.9E-19 174.4 33.1 177 179-378 458-694 (758)
70 1g8p_A Magnesium-chelatase 38 99.7 8.7E-16 3E-20 170.3 16.0 221 559-816 25-299 (350)
71 3d8b_A Fidgetin-like protein 1 99.6 1.4E-15 4.8E-20 168.6 17.5 207 556-821 82-304 (357)
72 3pfi_A Holliday junction ATP-d 99.6 1.7E-15 5.7E-20 167.2 17.9 183 176-402 26-234 (338)
73 3vfd_A Spastin; ATPase, microt 99.6 8.1E-16 2.8E-20 172.9 15.1 206 556-820 113-334 (389)
74 3uk6_A RUVB-like 2; hexameric 99.6 1.1E-15 3.7E-20 170.8 15.9 220 557-819 43-310 (368)
75 3b9p_A CG5977-PA, isoform A; A 99.6 2.9E-15 1E-19 162.0 18.4 207 556-820 19-241 (297)
76 1lv7_A FTSH; alpha/beta domain 99.6 2.9E-15 9.8E-20 158.4 17.5 198 177-403 10-233 (257)
77 3co5_A Putative two-component 99.6 9.5E-17 3.2E-21 153.5 5.1 138 559-758 5-143 (143)
78 2bjv_A PSP operon transcriptio 99.6 1.6E-15 5.5E-20 161.2 14.4 184 177-377 4-220 (265)
79 1lv7_A FTSH; alpha/beta domain 99.6 1.3E-15 4.5E-20 161.0 13.3 201 557-820 11-233 (257)
80 1ofh_A ATP-dependent HSL prote 99.6 8.4E-15 2.9E-19 159.3 18.0 210 180-401 16-272 (310)
81 3vkg_A Dynein heavy chain, cyt 99.6 2.2E-13 7.6E-18 181.0 34.6 444 199-771 1303-1827(3245)
82 2r44_A Uncharacterized protein 99.6 1.3E-15 4.3E-20 167.6 10.9 196 558-797 27-238 (331)
83 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.8E-15 6.1E-20 173.0 12.4 215 557-813 21-260 (500)
84 2chg_A Replication factor C sm 99.6 8.4E-15 2.9E-19 150.7 15.6 187 557-817 16-209 (226)
85 3h4m_A Proteasome-activating n 99.6 6.6E-15 2.3E-19 158.2 15.0 205 557-820 16-239 (285)
86 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.4E-14 4.8E-19 153.5 16.9 200 559-819 7-229 (262)
87 2chq_A Replication factor C sm 99.6 8.3E-15 2.8E-19 160.0 15.0 193 550-816 9-208 (319)
88 2ce7_A Cell division protein F 99.6 1.3E-14 4.5E-19 164.7 16.9 197 558-819 16-236 (476)
89 1iqp_A RFCS; clamp loader, ext 99.6 1.6E-14 5.6E-19 158.2 16.1 191 551-815 18-215 (327)
90 3hu3_A Transitional endoplasmi 99.6 8.6E-15 2.9E-19 167.7 13.8 202 559-822 205-425 (489)
91 3te6_A Regulatory protein SIR3 99.6 3.1E-14 1E-18 152.9 16.5 233 558-831 20-298 (318)
92 1d2n_A N-ethylmaleimide-sensit 99.6 2E-15 7E-20 161.0 7.3 210 546-817 21-247 (272)
93 1hqc_A RUVB; extended AAA-ATPa 99.6 9.7E-15 3.3E-19 160.0 12.7 180 177-400 10-216 (324)
94 2chg_A Replication factor C sm 99.6 5E-14 1.7E-18 144.8 17.2 189 176-400 14-209 (226)
95 3u61_B DNA polymerase accessor 99.6 1.4E-14 4.8E-19 158.7 13.4 187 176-399 23-220 (324)
96 2r62_A Cell division protease 99.6 6.8E-16 2.3E-20 164.4 2.5 163 177-357 9-198 (268)
97 1sxj_D Activator 1 41 kDa subu 99.5 7.6E-15 2.6E-19 162.8 10.5 205 552-816 31-239 (353)
98 3te6_A Regulatory protein SIR3 99.5 2E-14 6.9E-19 154.3 13.2 168 181-359 22-215 (318)
99 4akg_A Glutathione S-transfera 99.5 3.1E-13 1.1E-17 179.3 27.0 134 590-756 925-1073(2695)
100 2x8a_A Nuclear valosin-contain 99.5 7.3E-14 2.5E-18 148.5 17.3 201 177-401 8-232 (274)
101 1d2n_A N-ethylmaleimide-sensit 99.5 8.5E-14 2.9E-18 148.4 17.2 179 179-381 33-229 (272)
102 1njg_A DNA polymerase III subu 99.5 1.4E-13 4.7E-18 143.5 18.3 199 556-815 21-231 (250)
103 2dhr_A FTSH; AAA+ protein, hex 99.5 2.7E-14 9.4E-19 163.0 12.2 198 176-402 28-251 (499)
104 3t15_A Ribulose bisphosphate c 99.5 2.1E-14 7.3E-19 154.4 10.1 140 199-356 35-199 (293)
105 1l8q_A Chromosomal replication 99.5 7.7E-14 2.6E-18 152.8 14.6 173 589-818 38-214 (324)
106 1jr3_A DNA polymerase III subu 99.5 2.8E-13 9.6E-18 151.3 19.0 202 556-816 14-225 (373)
107 2qby_B CDC6 homolog 3, cell di 99.5 8.3E-14 2.8E-18 156.3 14.7 208 559-816 21-249 (384)
108 3n70_A Transport activator; si 99.5 1.3E-14 4.4E-19 139.0 6.9 137 180-344 2-144 (145)
109 3hws_A ATP-dependent CLP prote 99.5 1.9E-13 6.4E-18 152.2 16.9 186 181-378 17-301 (363)
110 4fcw_A Chaperone protein CLPB; 99.5 2E-13 6.8E-18 148.6 16.8 181 180-378 18-257 (311)
111 1ixz_A ATP-dependent metallopr 99.5 2.6E-13 8.9E-18 143.1 16.6 197 177-402 14-236 (254)
112 3f9v_A Minichromosome maintena 99.5 1.6E-14 5.6E-19 169.8 7.9 201 589-814 328-562 (595)
113 2r62_A Cell division protease 99.5 8.1E-15 2.8E-19 156.0 4.8 169 590-817 46-231 (268)
114 1sxj_B Activator 1 37 kDa subu 99.5 9.5E-14 3.2E-18 151.8 13.3 189 553-816 16-213 (323)
115 3uk6_A RUVB-like 2; hexameric 99.5 2.2E-13 7.5E-18 152.0 16.5 199 177-403 42-311 (368)
116 1iqp_A RFCS; clamp loader, ext 99.5 1.7E-13 6E-18 150.0 15.3 192 176-399 22-216 (327)
117 2v1u_A Cell division control p 99.5 2.2E-13 7.7E-18 152.8 16.3 213 179-402 19-256 (387)
118 1fnn_A CDC6P, cell division co 99.5 5.7E-13 2E-17 149.7 19.3 217 559-817 18-252 (389)
119 1ny5_A Transcriptional regulat 99.5 7.6E-14 2.6E-18 156.1 11.6 194 178-396 136-361 (387)
120 2chq_A Replication factor C sm 99.5 9.8E-14 3.4E-18 151.4 11.6 191 177-399 15-208 (319)
121 2dhr_A FTSH; AAA+ protein, hex 99.5 6.7E-14 2.3E-18 159.8 10.6 196 558-818 31-250 (499)
122 1iy2_A ATP-dependent metallopr 99.5 7.7E-13 2.6E-17 141.4 17.7 198 176-402 37-260 (278)
123 3bos_A Putative DNA replicatio 99.5 5.1E-13 1.8E-17 139.2 15.6 168 589-819 53-224 (242)
124 1sxj_D Activator 1 41 kDa subu 99.5 2.1E-13 7.1E-18 151.2 13.4 191 176-401 34-241 (353)
125 1sxj_C Activator 1 40 kDa subu 99.5 3.4E-13 1.2E-17 148.6 14.5 188 551-812 18-212 (340)
126 3dzd_A Transcriptional regulat 99.5 6.6E-14 2.2E-18 155.3 8.7 191 180-396 130-352 (368)
127 1sxj_A Activator 1 95 kDa subu 99.5 9.4E-14 3.2E-18 161.6 10.4 191 176-399 36-256 (516)
128 2r44_A Uncharacterized protein 99.4 2.5E-13 8.7E-18 149.2 12.5 176 177-379 25-240 (331)
129 1um8_A ATP-dependent CLP prote 99.4 1.8E-12 6.1E-17 145.0 19.4 207 180-401 22-338 (376)
130 2v1u_A Cell division control p 99.4 2.2E-13 7.5E-18 152.9 11.7 216 559-817 20-254 (387)
131 1l8q_A Chromosomal replication 99.4 1.2E-12 4.2E-17 143.1 17.3 197 177-401 9-214 (324)
132 1sxj_A Activator 1 95 kDa subu 99.4 2.3E-13 7.8E-18 158.3 11.9 210 550-815 31-255 (516)
133 1sxj_E Activator 1 40 kDa subu 99.4 3.4E-13 1.1E-17 149.6 12.6 205 550-816 6-241 (354)
134 1sxj_B Activator 1 37 kDa subu 99.4 5.4E-13 1.8E-17 145.8 13.9 188 176-399 18-213 (323)
135 2x8a_A Nuclear valosin-contain 99.4 1.2E-12 4.1E-17 139.1 15.8 178 590-825 46-239 (274)
136 3m6a_A ATP-dependent protease 99.4 3E-13 1E-17 157.8 12.1 178 180-378 82-295 (543)
137 3bos_A Putative DNA replicatio 99.4 1.3E-12 4.4E-17 136.2 15.3 193 177-402 26-224 (242)
138 2qby_A CDC6 homolog 1, cell di 99.4 2.8E-12 9.5E-17 143.7 19.1 210 178-402 19-252 (386)
139 3co5_A Putative two-component 99.4 1.6E-14 5.4E-19 138.0 0.4 132 180-344 5-142 (143)
140 1njg_A DNA polymerase III subu 99.4 1.3E-12 4.4E-17 136.1 15.0 193 176-399 20-232 (250)
141 1a5t_A Delta prime, HOLB; zinc 99.4 2.1E-12 7.2E-17 141.7 16.7 174 564-798 8-194 (334)
142 1ypw_A Transitional endoplasmi 99.4 2E-14 6.9E-19 175.1 0.6 164 176-357 474-663 (806)
143 2qby_B CDC6 homolog 3, cell di 99.4 4.9E-12 1.7E-16 141.8 20.0 205 179-402 20-252 (384)
144 1in4_A RUVB, holliday junction 99.4 4.2E-12 1.4E-16 139.3 18.5 201 552-816 19-227 (334)
145 2z4s_A Chromosomal replication 99.4 4.3E-13 1.5E-17 152.5 10.8 175 589-819 131-313 (440)
146 3pxg_A Negative regulator of g 99.4 4.9E-13 1.7E-17 153.4 11.2 170 560-797 182-360 (468)
147 1ixz_A ATP-dependent metallopr 99.4 1E-12 3.4E-17 138.5 11.7 168 590-820 51-237 (254)
148 1jr3_A DNA polymerase III subu 99.4 5.6E-12 1.9E-16 140.8 18.1 195 176-401 13-227 (373)
149 1iy2_A ATP-dependent metallopr 99.4 1.6E-12 5.5E-17 138.9 12.9 167 590-819 75-260 (278)
150 1fnn_A CDC6P, cell division co 99.4 1.1E-11 3.7E-16 139.2 20.2 206 179-402 17-254 (389)
151 2z4s_A Chromosomal replication 99.4 5E-12 1.7E-16 143.7 15.2 204 177-403 103-314 (440)
152 2gno_A DNA polymerase III, gam 99.3 3.9E-12 1.3E-16 136.9 13.0 145 562-770 1-152 (305)
153 1g8p_A Magnesium-chelatase 38 99.3 2.9E-12 1E-16 141.7 12.0 210 177-404 22-304 (350)
154 1g41_A Heat shock protein HSLU 99.3 1.3E-11 4.6E-16 137.9 17.0 100 273-378 251-381 (444)
155 1in4_A RUVB, holliday junction 99.3 2.2E-11 7.7E-16 133.5 17.7 185 176-404 22-232 (334)
156 1jbk_A CLPB protein; beta barr 99.3 7.2E-13 2.5E-17 132.7 5.1 153 559-766 23-194 (195)
157 1sxj_C Activator 1 40 kDa subu 99.3 9E-12 3.1E-16 137.2 14.0 187 176-398 22-215 (340)
158 1sxj_E Activator 1 40 kDa subu 99.3 8.9E-12 3E-16 138.1 13.6 198 176-402 11-244 (354)
159 1qvr_A CLPB protein; coiled co 99.3 6.6E-12 2.3E-16 154.9 13.6 181 180-378 559-798 (854)
160 2qby_A CDC6 homolog 1, cell di 99.3 6.4E-12 2.2E-16 140.7 12.2 214 559-817 21-250 (386)
161 3f8t_A Predicted ATPase involv 99.3 1.4E-11 4.9E-16 136.0 12.6 228 552-813 208-457 (506)
162 3vkg_A Dynein heavy chain, cyt 99.3 5E-10 1.7E-14 149.4 28.9 134 590-756 908-1055(3245)
163 2p65_A Hypothetical protein PF 99.2 1.7E-11 5.7E-16 122.1 7.3 146 559-758 23-187 (187)
164 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 8E-11 2.7E-15 134.6 11.1 201 180-405 23-269 (500)
165 3k1j_A LON protease, ATP-depen 99.1 2.7E-10 9.2E-15 135.0 16.0 207 177-404 39-357 (604)
166 1w5s_A Origin recognition comp 99.1 1.2E-09 3.9E-14 123.6 19.3 213 179-401 22-272 (412)
167 1a5t_A Delta prime, HOLB; zinc 99.1 5.9E-10 2E-14 122.2 13.5 182 184-398 7-208 (334)
168 1w5s_A Origin recognition comp 99.0 9.9E-10 3.4E-14 124.1 11.7 215 559-816 23-270 (412)
169 2c9o_A RUVB-like 1; hexameric 99.0 2.2E-10 7.4E-15 131.1 6.1 99 557-674 36-140 (456)
170 3f9v_A Minichromosome maintena 99.0 2.3E-11 8E-16 142.9 -3.2 205 179-401 295-536 (595)
171 2gno_A DNA polymerase III, gam 98.9 2.3E-09 7.8E-14 115.3 10.4 147 183-355 1-152 (305)
172 3ec2_A DNA replication protein 98.8 3E-09 1E-13 105.5 6.0 104 590-714 40-146 (180)
173 2qen_A Walker-type ATPase; unk 98.8 1.1E-07 3.7E-12 104.5 19.3 182 179-380 12-237 (350)
174 2w58_A DNAI, primosome compone 98.8 4.6E-09 1.6E-13 106.1 5.5 107 589-716 55-164 (202)
175 2fna_A Conserved hypothetical 98.7 2.6E-07 8.9E-12 101.8 18.9 160 179-356 13-223 (357)
176 2kjq_A DNAA-related protein; s 98.7 1.4E-08 4.9E-13 97.0 7.4 91 590-714 38-128 (149)
177 3cmu_A Protein RECA, recombina 98.7 6.4E-08 2.2E-12 124.8 13.9 82 590-672 1429-1517(2050)
178 2w58_A DNAI, primosome compone 98.7 4.3E-08 1.5E-12 98.9 8.7 96 176-285 22-128 (202)
179 3f8t_A Predicted ATPase involv 98.6 4.3E-08 1.5E-12 108.5 7.5 209 176-407 210-468 (506)
180 3ljc_A ATP-dependent protease 98.6 1.3E-08 4.4E-13 106.3 2.0 150 304-465 90-250 (252)
181 2qgz_A Helicase loader, putati 98.5 4.9E-08 1.7E-12 105.3 5.9 108 589-717 153-264 (308)
182 1jr3_D DNA polymerase III, del 98.5 5E-07 1.7E-11 99.3 14.1 163 590-816 20-189 (343)
183 3fh2_A Probable ATP-dependent 98.5 2.6E-07 8.8E-12 87.9 7.7 65 5-71 81-145 (146)
184 3fes_A ATP-dependent CLP endop 98.4 2E-07 6.7E-12 88.6 5.9 64 5-70 81-144 (145)
185 1tue_A Replication protein E1; 98.4 7.5E-07 2.6E-11 88.0 10.1 96 590-712 60-158 (212)
186 3ec2_A DNA replication protein 98.4 1.9E-07 6.4E-12 92.3 5.7 95 177-283 8-111 (180)
187 2kjq_A DNAA-related protein; s 98.4 2.1E-07 7.3E-12 88.8 4.9 107 199-336 35-141 (149)
188 1u0j_A DNA replication protein 98.4 9.3E-07 3.2E-11 91.6 9.5 135 588-767 104-248 (267)
189 2qen_A Walker-type ATPase; unk 98.3 2.6E-06 8.7E-11 93.5 12.7 181 559-796 13-233 (350)
190 2qgz_A Helicase loader, putati 98.3 3.4E-07 1.2E-11 98.6 5.2 95 177-285 122-227 (308)
191 2y1q_A CLPC N-domain, negative 98.2 1.8E-06 6.2E-11 82.4 7.9 65 5-71 79-143 (150)
192 2fna_A Conserved hypothetical 98.2 5E-06 1.7E-10 91.4 10.7 166 559-771 14-223 (357)
193 1k6k_A ATP-dependent CLP prote 98.1 5.1E-06 1.7E-10 78.6 7.7 61 5-67 79-139 (143)
194 1tue_A Replication protein E1; 98.1 1.6E-06 5.4E-11 85.6 4.0 39 186-224 43-82 (212)
195 1jr3_D DNA polymerase III, del 98.1 1E-05 3.5E-10 88.6 10.8 172 195-401 13-191 (343)
196 2r2a_A Uncharacterized protein 98.0 1E-05 3.5E-10 80.8 7.6 131 202-342 7-153 (199)
197 2r2a_A Uncharacterized protein 98.0 1.7E-05 5.8E-10 79.2 9.1 129 590-756 7-152 (199)
198 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.5E-05 5E-10 84.6 8.6 105 200-317 123-235 (331)
199 1khy_A CLPB protein; alpha hel 97.9 1.8E-05 6.3E-10 75.2 7.9 60 5-67 82-141 (148)
200 2orw_A Thymidine kinase; TMTK, 97.9 1.2E-05 4.2E-10 79.4 6.3 95 590-686 5-102 (184)
201 1qzm_A ATP-dependent protease 97.8 7.4E-05 2.5E-09 63.7 9.5 67 756-826 2-71 (94)
202 2r8r_A Sensor protein; KDPD, P 97.8 6.9E-05 2.4E-09 75.4 9.7 150 588-763 6-170 (228)
203 1u0j_A DNA replication protein 97.7 0.00011 3.7E-09 76.1 9.9 37 188-224 90-128 (267)
204 1ye8_A Protein THEP1, hypothet 97.7 7.5E-05 2.6E-09 73.2 8.2 24 590-613 2-25 (178)
205 1ye8_A Protein THEP1, hypothet 97.7 0.00019 6.5E-09 70.4 10.8 23 202-224 2-24 (178)
206 2vhj_A Ntpase P4, P4; non- hyd 97.6 9.4E-05 3.2E-09 78.5 7.8 69 590-674 125-196 (331)
207 3cmw_A Protein RECA, recombina 97.5 9.1E-05 3.1E-09 95.0 7.9 79 201-287 1083-1175(1706)
208 2b8t_A Thymidine kinase; deoxy 97.5 0.00032 1.1E-08 71.1 9.8 99 587-685 11-114 (223)
209 1z6t_A APAF-1, apoptotic prote 97.5 0.00033 1.1E-08 82.7 11.5 46 178-223 123-170 (591)
210 3upu_A ATP-dependent DNA helic 97.4 0.00031 1.1E-08 80.0 9.3 113 562-686 29-154 (459)
211 3cmw_A Protein RECA, recombina 97.3 0.00021 7.2E-09 91.7 6.3 85 590-675 1084-1175(1706)
212 3jvv_A Twitching mobility prot 97.2 0.00035 1.2E-08 76.3 7.1 99 586-687 121-221 (356)
213 3zri_A CLPB protein, CLPV; cha 97.2 0.0022 7.4E-08 62.0 11.2 59 84-142 24-84 (171)
214 1g5t_A COB(I)alamin adenosyltr 97.1 0.0011 3.9E-08 65.1 8.2 115 588-715 28-167 (196)
215 3sfz_A APAF-1, apoptotic pepti 97.0 0.0035 1.2E-07 80.7 14.9 46 178-223 123-170 (1249)
216 3kl4_A SRP54, signal recogniti 97.0 0.011 3.6E-07 66.0 16.3 96 588-684 97-207 (433)
217 3e1s_A Exodeoxyribonuclease V, 97.0 0.0009 3.1E-08 78.0 8.0 90 590-686 206-305 (574)
218 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.002 7E-08 65.6 9.7 28 199-226 22-49 (235)
219 2i3b_A HCR-ntpase, human cance 97.0 0.00049 1.7E-08 68.0 4.8 24 590-613 3-26 (189)
220 3cmu_A Protein RECA, recombina 97.0 0.0022 7.6E-08 83.3 11.9 81 198-286 1425-1519(2050)
221 2orw_A Thymidine kinase; TMTK, 96.9 0.00014 4.9E-09 71.7 0.3 25 202-226 5-29 (184)
222 2eyu_A Twitching motility prot 96.9 0.0019 6.5E-08 67.3 8.8 94 587-686 24-122 (261)
223 1vt4_I APAF-1 related killer D 96.9 0.0046 1.6E-07 75.2 13.0 43 181-223 130-173 (1221)
224 2a5y_B CED-4; apoptosis; HET: 96.9 0.0017 5.9E-08 75.7 8.9 44 561-610 131-174 (549)
225 3dm5_A SRP54, signal recogniti 96.9 0.0057 1.9E-07 68.2 12.5 96 588-683 100-207 (443)
226 1xx6_A Thymidine kinase; NESG, 96.9 0.0015 5.1E-08 64.5 7.0 93 590-686 10-107 (191)
227 3upu_A ATP-dependent DNA helic 96.9 0.0011 3.9E-08 75.3 7.0 45 183-228 29-73 (459)
228 2a5y_B CED-4; apoptosis; HET: 96.8 0.0025 8.7E-08 74.2 9.9 41 182-222 131-174 (549)
229 3lw7_A Adenylate kinase relate 96.7 0.01 3.5E-07 57.2 11.9 32 590-627 3-34 (179)
230 2iut_A DNA translocase FTSK; n 96.7 0.011 3.7E-07 67.8 13.6 142 200-351 214-419 (574)
231 1qhx_A CPT, protein (chloramph 96.7 0.00096 3.3E-08 65.0 4.4 36 201-246 4-39 (178)
232 3trf_A Shikimate kinase, SK; a 96.7 0.0007 2.4E-08 66.5 3.2 25 200-224 5-29 (185)
233 2ewv_A Twitching motility prot 96.7 0.003 1E-07 69.5 8.3 91 586-686 134-233 (372)
234 2cvh_A DNA repair and recombin 96.6 0.0022 7.5E-08 64.8 6.5 35 200-244 20-54 (220)
235 3hr8_A Protein RECA; alpha and 96.6 0.0049 1.7E-07 66.9 9.6 85 589-674 62-153 (356)
236 1z6t_A APAF-1, apoptotic prote 96.6 0.0027 9.2E-08 74.8 8.2 45 559-610 125-169 (591)
237 1gvn_B Zeta; postsegregational 96.6 0.0032 1.1E-07 66.7 7.8 36 589-627 34-69 (287)
238 1qhx_A CPT, protein (chloramph 96.6 0.00099 3.4E-08 64.9 3.4 35 590-627 5-39 (178)
239 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0026 9E-08 64.7 6.7 36 590-625 25-60 (235)
240 2j9r_A Thymidine kinase; TK1, 96.6 0.0033 1.1E-07 62.6 7.1 95 590-686 30-127 (214)
241 2p5t_B PEZT; postsegregational 96.5 0.0038 1.3E-07 64.8 7.6 36 589-627 33-68 (253)
242 2zr9_A Protein RECA, recombina 96.5 0.0058 2E-07 66.5 9.0 83 590-673 63-152 (349)
243 3vaa_A Shikimate kinase, SK; s 96.5 0.0012 4.2E-08 65.8 3.3 26 199-224 24-49 (199)
244 3iij_A Coilin-interacting nucl 96.5 0.0017 5.9E-08 63.4 4.3 26 199-224 10-35 (180)
245 3e1s_A Exodeoxyribonuclease V, 96.5 0.079 2.7E-06 61.6 18.9 28 200-227 204-231 (574)
246 3crm_A TRNA delta(2)-isopenten 96.5 0.0019 6.4E-08 69.0 4.7 100 201-318 6-105 (323)
247 1n0w_A DNA repair protein RAD5 96.4 0.0083 2.9E-07 61.4 9.5 26 199-224 23-48 (243)
248 1via_A Shikimate kinase; struc 96.4 0.0017 5.8E-08 63.2 3.8 24 201-224 5-28 (175)
249 1xp8_A RECA protein, recombina 96.4 0.0098 3.4E-07 65.0 10.2 80 199-286 73-166 (366)
250 2dr3_A UPF0273 protein PH0284; 96.4 0.017 6E-07 59.1 11.7 28 199-226 22-49 (247)
251 1y63_A LMAJ004144AAA protein; 96.4 0.0016 5.5E-08 64.0 3.5 25 199-223 9-33 (184)
252 3trf_A Shikimate kinase, SK; a 96.3 0.0019 6.6E-08 63.3 3.8 24 590-613 7-30 (185)
253 1w36_D RECD, exodeoxyribonucle 96.3 0.0075 2.6E-07 70.9 9.4 26 660-685 262-287 (608)
254 2cdn_A Adenylate kinase; phosp 96.3 0.0026 8.7E-08 63.4 4.6 30 582-612 15-44 (201)
255 1nks_A Adenylate kinase; therm 96.3 0.0019 6.6E-08 63.6 3.7 37 590-626 3-39 (194)
256 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7.3E-08 62.0 3.9 23 202-224 3-25 (173)
257 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.8E-08 62.7 3.0 26 199-224 6-31 (168)
258 1xp8_A RECA protein, recombina 96.3 0.0059 2E-07 66.8 7.5 83 590-673 76-165 (366)
259 2iyv_A Shikimate kinase, SK; t 96.3 0.0021 7.2E-08 63.0 3.6 24 201-224 3-26 (184)
260 1u94_A RECA protein, recombina 96.3 0.0082 2.8E-07 65.4 8.6 83 590-673 65-154 (356)
261 3vaa_A Shikimate kinase, SK; s 96.3 0.0025 8.5E-08 63.5 4.0 23 590-612 27-49 (199)
262 1kht_A Adenylate kinase; phosp 96.2 0.0022 7.6E-08 63.1 3.5 37 590-626 5-41 (192)
263 2cvh_A DNA repair and recombin 96.2 0.0036 1.2E-07 63.1 5.2 34 590-626 22-55 (220)
264 1n0w_A DNA repair protein RAD5 96.2 0.0054 1.9E-07 62.9 6.6 37 590-626 26-68 (243)
265 3kb2_A SPBC2 prophage-derived 96.2 0.0028 9.6E-08 61.2 4.1 24 590-613 3-26 (173)
266 3umf_A Adenylate kinase; rossm 96.2 0.0026 8.9E-08 64.1 3.9 39 585-629 27-65 (217)
267 1nlf_A Regulatory protein REPA 96.2 0.0092 3.1E-07 62.8 8.3 25 590-614 32-56 (279)
268 2fz4_A DNA repair protein RAD2 96.2 0.008 2.7E-07 61.6 7.5 105 590-711 110-229 (237)
269 2ehv_A Hypothetical protein PH 96.2 0.014 4.7E-07 60.1 9.4 24 199-222 29-52 (251)
270 1knq_A Gluconate kinase; ALFA/ 96.2 0.0045 1.6E-07 60.0 5.4 35 588-627 8-42 (175)
271 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0065 2.2E-07 65.6 7.1 87 590-686 173-263 (330)
272 1via_A Shikimate kinase; struc 96.1 0.0022 7.4E-08 62.4 2.8 33 590-627 6-38 (175)
273 2dr3_A UPF0273 protein PH0284; 96.1 0.0074 2.5E-07 62.0 7.1 37 590-626 25-61 (247)
274 3io5_A Recombination and repai 96.1 0.0074 2.5E-07 63.7 6.9 86 587-673 27-124 (333)
275 1kag_A SKI, shikimate kinase I 96.1 0.0045 1.5E-07 59.9 5.0 25 200-224 4-28 (173)
276 1u94_A RECA protein, recombina 96.1 0.0077 2.6E-07 65.6 7.3 81 199-286 62-155 (356)
277 3tlx_A Adenylate kinase 2; str 96.1 0.006 2.1E-07 62.8 6.1 34 589-627 30-63 (243)
278 3exa_A TRNA delta(2)-isopenten 96.1 0.0027 9.2E-08 67.1 3.4 99 202-318 5-103 (322)
279 4a74_A DNA repair and recombin 96.1 0.0065 2.2E-07 61.7 6.2 38 589-626 26-69 (231)
280 1w4r_A Thymidine kinase; type 96.1 0.0055 1.9E-07 60.1 5.3 91 590-686 22-116 (195)
281 3sr0_A Adenylate kinase; phosp 96.1 0.0027 9.3E-08 63.6 3.2 35 590-629 2-36 (206)
282 2iut_A DNA translocase FTSK; n 96.1 0.038 1.3E-06 63.3 12.9 74 660-767 343-420 (574)
283 2b8t_A Thymidine kinase; deoxy 96.1 0.01 3.5E-07 59.9 7.4 26 202-227 14-39 (223)
284 2xxa_A Signal recognition part 96.0 0.053 1.8E-06 60.6 13.9 97 586-682 98-207 (433)
285 2ze6_A Isopentenyl transferase 96.0 0.0034 1.2E-07 65.1 3.9 32 202-243 3-34 (253)
286 1e6c_A Shikimate kinase; phosp 96.0 0.0037 1.3E-07 60.4 3.9 24 201-224 3-26 (173)
287 1y63_A LMAJ004144AAA protein; 96.0 0.0038 1.3E-07 61.3 4.0 36 590-629 12-47 (184)
288 1nks_A Adenylate kinase; therm 96.0 0.0055 1.9E-07 60.2 5.2 38 202-246 3-40 (194)
289 2rhm_A Putative kinase; P-loop 96.0 0.0027 9.1E-08 62.7 2.8 25 200-224 5-29 (193)
290 2ze6_A Isopentenyl transferase 96.0 0.0041 1.4E-07 64.5 4.4 24 590-613 3-26 (253)
291 3e70_C DPA, signal recognition 96.0 0.054 1.9E-06 58.1 13.2 35 587-621 128-162 (328)
292 3foz_A TRNA delta(2)-isopenten 96.0 0.0025 8.6E-08 67.2 2.6 97 202-318 12-110 (316)
293 3tqc_A Pantothenate kinase; bi 96.0 0.022 7.5E-07 60.9 10.0 42 585-627 90-133 (321)
294 4a74_A DNA repair and recombin 96.0 0.016 5.6E-07 58.6 8.8 25 200-224 25-49 (231)
295 1nlf_A Regulatory protein REPA 96.0 0.026 9E-07 59.3 10.5 29 199-227 29-57 (279)
296 1kag_A SKI, shikimate kinase I 96.0 0.0039 1.3E-07 60.3 3.8 32 590-626 6-37 (173)
297 3iij_A Coilin-interacting nucl 96.0 0.003 1E-07 61.7 2.9 33 590-627 13-45 (180)
298 2c95_A Adenylate kinase 1; tra 95.9 0.0038 1.3E-07 61.7 3.6 25 200-224 9-33 (196)
299 1zuh_A Shikimate kinase; alpha 95.9 0.0042 1.4E-07 59.8 3.8 25 589-613 8-32 (168)
300 3uie_A Adenylyl-sulfate kinase 95.9 0.0058 2E-07 60.8 4.9 38 589-626 26-63 (200)
301 1aky_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 63.1 3.7 25 200-224 4-28 (220)
302 3t61_A Gluconokinase; PSI-biol 95.9 0.0043 1.5E-07 61.8 3.9 33 590-627 20-52 (202)
303 3t61_A Gluconokinase; PSI-biol 95.9 0.0047 1.6E-07 61.6 4.1 25 200-224 18-42 (202)
304 2cdn_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 62.0 3.5 26 199-224 19-44 (201)
305 1aky_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 63.0 3.5 33 590-627 6-38 (220)
306 3lw7_A Adenylate kinase relate 95.9 0.0037 1.3E-07 60.4 3.0 22 202-224 3-24 (179)
307 1kht_A Adenylate kinase; phosp 95.8 0.0064 2.2E-07 59.7 4.8 26 201-226 4-29 (192)
308 2yvu_A Probable adenylyl-sulfa 95.8 0.0075 2.5E-07 59.2 5.2 37 589-625 14-50 (186)
309 2iyv_A Shikimate kinase, SK; t 95.8 0.0045 1.5E-07 60.6 3.6 33 590-627 4-36 (184)
310 1ukz_A Uridylate kinase; trans 95.8 0.0043 1.5E-07 61.8 3.4 33 590-627 17-49 (203)
311 1zp6_A Hypothetical protein AT 95.8 0.0048 1.6E-07 60.7 3.6 36 589-627 10-45 (191)
312 1rz3_A Hypothetical protein rb 95.8 0.013 4.4E-07 58.3 6.8 39 589-627 23-61 (201)
313 3cm0_A Adenylate kinase; ATP-b 95.8 0.0044 1.5E-07 60.7 3.3 33 590-627 6-38 (186)
314 2fz4_A DNA repair protein RAD2 95.8 0.017 5.9E-07 59.1 7.8 24 201-224 109-132 (237)
315 3jvv_A Twitching mobility prot 95.8 0.017 5.7E-07 62.9 8.1 40 183-226 110-149 (356)
316 2ius_A DNA translocase FTSK; n 95.8 0.042 1.4E-06 62.4 11.6 43 200-245 167-209 (512)
317 1zak_A Adenylate kinase; ATP:A 95.8 0.0043 1.5E-07 62.9 3.2 33 590-627 7-39 (222)
318 2yvu_A Probable adenylyl-sulfa 95.8 0.0071 2.4E-07 59.3 4.7 29 199-227 12-40 (186)
319 2rhm_A Putative kinase; P-loop 95.7 0.0065 2.2E-07 59.8 4.3 23 590-612 7-29 (193)
320 2zr9_A Protein RECA, recombina 95.7 0.021 7.2E-07 62.0 8.7 80 199-286 60-153 (349)
321 1tev_A UMP-CMP kinase; ploop, 95.7 0.0047 1.6E-07 60.9 3.2 33 590-627 5-37 (196)
322 1ak2_A Adenylate kinase isoenz 95.7 0.0056 1.9E-07 62.6 3.8 25 200-224 16-40 (233)
323 2bwj_A Adenylate kinase 5; pho 95.7 0.0048 1.6E-07 61.1 3.2 33 590-627 14-46 (199)
324 2z43_A DNA repair and recombin 95.7 0.023 7.9E-07 61.2 8.9 87 199-286 106-217 (324)
325 1tev_A UMP-CMP kinase; ploop, 95.7 0.0046 1.6E-07 61.0 3.0 24 201-224 4-27 (196)
326 2c95_A Adenylate kinase 1; tra 95.7 0.0054 1.8E-07 60.6 3.6 33 590-627 11-43 (196)
327 3dl0_A Adenylate kinase; phosp 95.7 0.0042 1.4E-07 62.6 2.8 33 590-627 2-34 (216)
328 1zd8_A GTP:AMP phosphotransfer 95.7 0.0048 1.7E-07 62.8 3.2 33 590-627 9-41 (227)
329 1gvn_B Zeta; postsegregational 95.7 0.011 3.6E-07 62.6 5.9 24 201-224 34-57 (287)
330 2pt5_A Shikimate kinase, SK; a 95.7 0.0046 1.6E-07 59.4 2.9 23 202-224 2-24 (168)
331 3tlx_A Adenylate kinase 2; str 95.7 0.0079 2.7E-07 61.9 4.8 26 199-224 28-53 (243)
332 1ly1_A Polynucleotide kinase; 95.7 0.0059 2E-07 59.3 3.6 32 590-626 4-36 (181)
333 2bwj_A Adenylate kinase 5; pho 95.7 0.0054 1.8E-07 60.8 3.4 25 200-224 12-36 (199)
334 1ak2_A Adenylate kinase isoenz 95.6 0.006 2.1E-07 62.4 3.8 33 590-627 18-50 (233)
335 3lda_A DNA repair protein RAD5 95.6 0.026 9E-07 62.3 9.1 43 199-244 177-221 (400)
336 4eun_A Thermoresistant glucoki 95.6 0.0082 2.8E-07 59.7 4.6 33 590-627 31-63 (200)
337 3fb4_A Adenylate kinase; psych 95.6 0.0048 1.7E-07 62.1 2.9 33 590-627 2-34 (216)
338 1zak_A Adenylate kinase; ATP:A 95.6 0.0048 1.6E-07 62.5 2.9 25 200-224 5-29 (222)
339 1qf9_A UMP/CMP kinase, protein 95.6 0.0052 1.8E-07 60.4 3.1 24 201-224 7-30 (194)
340 1e6c_A Shikimate kinase; phosp 95.6 0.006 2E-07 58.9 3.4 33 590-627 4-36 (173)
341 2orv_A Thymidine kinase; TP4A 95.6 0.049 1.7E-06 54.7 10.0 91 590-686 21-114 (234)
342 2yhs_A FTSY, cell division pro 95.6 0.022 7.5E-07 64.1 8.3 40 586-625 291-330 (503)
343 3dl0_A Adenylate kinase; phosp 95.6 0.0045 1.5E-07 62.4 2.5 23 202-224 2-24 (216)
344 3cm0_A Adenylate kinase; ATP-b 95.6 0.0083 2.8E-07 58.7 4.4 24 201-224 5-28 (186)
345 3fb4_A Adenylate kinase; psych 95.6 0.0053 1.8E-07 61.8 2.9 23 202-224 2-24 (216)
346 3a8t_A Adenylate isopentenyltr 95.6 0.0046 1.6E-07 66.2 2.5 34 200-243 40-73 (339)
347 1zd8_A GTP:AMP phosphotransfer 95.6 0.0054 1.8E-07 62.4 3.0 25 200-224 7-31 (227)
348 3dm5_A SRP54, signal recogniti 95.5 0.066 2.3E-06 59.6 11.9 37 201-244 101-137 (443)
349 3c8u_A Fructokinase; YP_612366 95.5 0.0096 3.3E-07 59.6 4.8 26 588-613 22-47 (208)
350 3hr8_A Protein RECA; alpha and 95.5 0.027 9.2E-07 61.1 8.5 80 199-286 60-153 (356)
351 1qf9_A UMP/CMP kinase, protein 95.5 0.006 2.1E-07 60.0 3.2 33 590-627 8-40 (194)
352 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0064 2.2E-07 63.4 3.5 37 590-626 6-42 (260)
353 3be4_A Adenylate kinase; malar 95.5 0.0061 2.1E-07 61.5 3.2 24 201-224 6-29 (217)
354 1rz3_A Hypothetical protein rb 95.5 0.025 8.6E-07 56.2 7.8 43 184-226 3-48 (201)
355 1knq_A Gluconate kinase; ALFA/ 95.5 0.0069 2.4E-07 58.7 3.4 24 201-224 9-32 (175)
356 2pt5_A Shikimate kinase, SK; a 95.5 0.0078 2.7E-07 57.8 3.8 24 590-613 2-25 (168)
357 4eun_A Thermoresistant glucoki 95.5 0.011 3.6E-07 58.9 4.8 27 198-224 27-53 (200)
358 2vli_A Antibiotic resistance p 95.5 0.0062 2.1E-07 59.4 3.1 25 590-614 7-31 (183)
359 3ney_A 55 kDa erythrocyte memb 95.5 0.0056 1.9E-07 60.5 2.7 26 199-224 18-43 (197)
360 3crm_A TRNA delta(2)-isopenten 95.5 0.0077 2.6E-07 64.2 3.9 31 590-623 7-37 (323)
361 2pez_A Bifunctional 3'-phospho 95.5 0.011 3.7E-07 57.6 4.7 36 589-624 6-41 (179)
362 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.011 3.6E-07 61.6 4.8 39 201-246 5-43 (260)
363 3sr0_A Adenylate kinase; phosp 95.4 0.011 3.9E-07 59.0 4.7 35 202-248 2-36 (206)
364 1zp6_A Hypothetical protein AT 95.4 0.006 2.1E-07 60.0 2.6 24 200-223 9-32 (191)
365 2pez_A Bifunctional 3'-phospho 95.4 0.013 4.3E-07 57.1 4.8 38 200-244 5-42 (179)
366 3a8t_A Adenylate isopentenyltr 95.4 0.0076 2.6E-07 64.5 3.4 32 590-624 42-73 (339)
367 1vt4_I APAF-1 related killer D 95.4 0.05 1.7E-06 66.3 10.8 42 561-610 131-172 (1221)
368 1ukz_A Uridylate kinase; trans 95.4 0.0068 2.3E-07 60.4 2.9 24 201-224 16-39 (203)
369 3foz_A TRNA delta(2)-isopenten 95.4 0.012 4E-07 62.1 4.8 32 590-624 12-43 (316)
370 2p5t_B PEZT; postsegregational 95.4 0.01 3.5E-07 61.5 4.3 24 201-224 33-56 (253)
371 1cke_A CK, MSSA, protein (cyti 95.4 0.0074 2.5E-07 61.2 3.2 34 590-628 7-40 (227)
372 3r20_A Cytidylate kinase; stru 95.4 0.0082 2.8E-07 61.1 3.5 34 590-628 11-44 (233)
373 3be4_A Adenylate kinase; malar 95.3 0.0075 2.6E-07 60.9 3.2 33 590-627 7-39 (217)
374 1ly1_A Polynucleotide kinase; 95.3 0.0083 2.8E-07 58.2 3.3 21 202-222 4-24 (181)
375 3nwj_A ATSK2; P loop, shikimat 95.3 0.0099 3.4E-07 61.3 4.0 25 200-224 48-72 (250)
376 1e4v_A Adenylate kinase; trans 95.3 0.0072 2.4E-07 60.9 2.9 33 590-627 2-34 (214)
377 1pzn_A RAD51, DNA repair and r 95.3 0.043 1.5E-06 59.6 9.2 26 199-224 130-155 (349)
378 2plr_A DTMP kinase, probable t 95.3 0.012 4.1E-07 58.8 4.5 25 590-614 6-30 (213)
379 2vli_A Antibiotic resistance p 95.3 0.0066 2.3E-07 59.2 2.5 25 200-224 5-29 (183)
380 1e4v_A Adenylate kinase; trans 95.3 0.0073 2.5E-07 60.8 2.8 23 202-224 2-24 (214)
381 2v3c_C SRP54, signal recogniti 95.3 0.061 2.1E-06 60.1 10.5 86 589-674 100-194 (432)
382 2pbr_A DTMP kinase, thymidylat 95.3 0.016 5.4E-07 57.0 5.2 34 202-242 2-35 (195)
383 3eph_A TRNA isopentenyltransfe 95.2 0.017 5.9E-07 63.2 5.8 96 202-317 4-101 (409)
384 2ga8_A Hypothetical 39.9 kDa p 95.2 0.012 4.1E-07 63.3 4.4 40 185-224 5-48 (359)
385 1v5w_A DMC1, meiotic recombina 95.2 0.043 1.5E-06 59.5 9.0 46 199-245 121-166 (343)
386 2pbr_A DTMP kinase, thymidylat 95.2 0.012 4.2E-07 57.8 4.2 34 590-623 2-35 (195)
387 2r6a_A DNAB helicase, replicat 95.2 0.049 1.7E-06 61.6 9.7 28 199-226 202-229 (454)
388 3uie_A Adenylyl-sulfate kinase 95.2 0.011 3.9E-07 58.7 3.9 28 198-225 23-50 (200)
389 1c9k_A COBU, adenosylcobinamid 95.2 0.0081 2.8E-07 58.3 2.6 75 591-669 2-82 (180)
390 2og2_A Putative signal recogni 95.1 0.089 3.1E-06 57.1 11.1 33 587-619 156-188 (359)
391 3umf_A Adenylate kinase; rossm 95.1 0.012 4.2E-07 59.1 3.8 35 202-248 31-65 (217)
392 2xb4_A Adenylate kinase; ATP-b 95.1 0.0094 3.2E-07 60.5 3.0 33 590-627 2-34 (223)
393 2jaq_A Deoxyguanosine kinase; 95.1 0.015 5.1E-07 57.7 4.4 23 202-224 2-24 (205)
394 2ga8_A Hypothetical 39.9 kDa p 95.1 0.023 7.9E-07 61.1 6.0 25 590-614 26-50 (359)
395 3h1t_A Type I site-specific re 95.1 0.036 1.2E-06 65.1 8.3 41 563-613 183-223 (590)
396 1w4r_A Thymidine kinase; type 95.0 0.013 4.3E-07 57.5 3.6 25 203-227 23-48 (195)
397 3d3q_A TRNA delta(2)-isopenten 95.0 0.016 5.4E-07 62.2 4.7 33 590-627 9-41 (340)
398 1ex7_A Guanylate kinase; subst 95.0 0.012 4.2E-07 57.6 3.5 22 591-612 4-25 (186)
399 1ex7_A Guanylate kinase; subst 95.0 0.013 4.4E-07 57.5 3.6 24 201-224 2-25 (186)
400 1vma_A Cell division protein F 95.0 0.04 1.4E-06 58.6 7.7 41 587-627 103-143 (306)
401 1cke_A CK, MSSA, protein (cyti 95.0 0.018 6.3E-07 58.2 4.9 24 201-224 6-29 (227)
402 2qor_A Guanylate kinase; phosp 95.0 0.013 4.3E-07 58.5 3.6 25 200-224 12-36 (204)
403 1sky_E F1-ATPase, F1-ATP synth 95.0 0.047 1.6E-06 61.0 8.4 27 200-226 151-177 (473)
404 1m7g_A Adenylylsulfate kinase; 95.0 0.015 5.2E-07 58.3 4.1 38 589-626 26-64 (211)
405 2qt1_A Nicotinamide riboside k 95.0 0.019 6.4E-07 57.3 4.8 45 580-628 13-57 (207)
406 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.7E-07 58.9 3.0 22 202-224 3-24 (204)
407 2j37_W Signal recognition part 94.9 0.088 3E-06 59.8 10.7 98 587-684 100-209 (504)
408 3llm_A ATP-dependent RNA helic 94.9 0.053 1.8E-06 55.3 8.2 19 590-608 78-96 (235)
409 3vkw_A Replicase large subunit 94.9 0.056 1.9E-06 60.0 8.8 92 588-686 161-260 (446)
410 2xb4_A Adenylate kinase; ATP-b 94.9 0.019 6.4E-07 58.2 4.6 23 202-224 2-24 (223)
411 2qor_A Guanylate kinase; phosp 94.9 0.012 4.1E-07 58.7 3.0 23 590-612 14-36 (204)
412 3bh0_A DNAB-like replicative h 94.9 0.12 4.2E-06 55.1 11.2 29 199-227 67-95 (315)
413 3ice_A Transcription terminati 94.9 0.074 2.5E-06 57.6 9.2 91 190-286 163-275 (422)
414 2z0h_A DTMP kinase, thymidylat 94.8 0.023 8E-07 55.9 5.1 27 203-229 3-29 (197)
415 2bbw_A Adenylate kinase 4, AK4 94.8 0.01 3.5E-07 61.1 2.5 23 590-612 29-51 (246)
416 1m7g_A Adenylylsulfate kinase; 94.8 0.024 8E-07 56.9 5.1 42 197-245 22-64 (211)
417 3r20_A Cytidylate kinase; stru 94.8 0.021 7.1E-07 58.1 4.7 25 200-224 9-33 (233)
418 2jaq_A Deoxyguanosine kinase; 94.8 0.014 4.9E-07 57.8 3.5 24 590-613 2-25 (205)
419 1kgd_A CASK, peripheral plasma 94.8 0.014 4.8E-07 56.9 3.3 23 590-612 7-29 (180)
420 3exa_A TRNA delta(2)-isopenten 94.8 0.017 5.8E-07 61.0 4.0 24 590-613 5-28 (322)
421 3tau_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 58.2 3.5 23 590-612 10-32 (208)
422 1j8m_F SRP54, signal recogniti 94.8 0.35 1.2E-05 51.0 14.3 40 588-627 98-137 (297)
423 3eph_A TRNA isopentenyltransfe 94.8 0.023 7.7E-07 62.3 5.0 31 590-623 4-34 (409)
424 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 56.7 4.0 30 591-620 3-32 (197)
425 1zu4_A FTSY; GTPase, signal re 94.7 0.034 1.2E-06 59.6 6.3 42 586-627 103-144 (320)
426 1nn5_A Similar to deoxythymidy 94.7 0.022 7.6E-07 57.0 4.6 25 590-614 11-35 (215)
427 2grj_A Dephospho-COA kinase; T 94.7 0.016 5.6E-07 57.1 3.5 23 202-224 14-36 (192)
428 1g5t_A COB(I)alamin adenosyltr 94.7 0.15 5E-06 50.0 10.2 31 199-229 27-57 (196)
429 4e22_A Cytidylate kinase; P-lo 94.7 0.016 5.4E-07 60.0 3.5 34 590-628 29-62 (252)
430 1sq5_A Pantothenate kinase; P- 94.7 0.043 1.5E-06 58.5 7.1 39 589-627 81-121 (308)
431 2wwf_A Thymidilate kinase, put 94.7 0.021 7.2E-07 57.1 4.3 25 590-614 12-36 (212)
432 3b9q_A Chloroplast SRP recepto 94.7 0.065 2.2E-06 56.9 8.3 33 587-619 99-131 (302)
433 1odf_A YGR205W, hypothetical 3 94.7 0.043 1.5E-06 57.9 6.9 46 566-614 12-57 (290)
434 1uj2_A Uridine-cytidine kinase 94.7 0.023 8E-07 58.7 4.7 39 590-628 24-67 (252)
435 3c8u_A Fructokinase; YP_612366 94.7 0.021 7.2E-07 57.1 4.2 39 187-225 7-47 (208)
436 3d3q_A TRNA delta(2)-isopenten 94.6 0.018 6.2E-07 61.8 3.9 23 202-224 9-31 (340)
437 3nwj_A ATSK2; P loop, shikimat 94.6 0.024 8.3E-07 58.4 4.7 33 590-627 50-82 (250)
438 3lda_A DNA repair protein RAD5 94.6 0.047 1.6E-06 60.3 7.2 37 590-626 180-222 (400)
439 2grj_A Dephospho-COA kinase; T 94.6 0.017 5.7E-07 57.1 3.2 34 590-628 14-47 (192)
440 2plr_A DTMP kinase, probable t 94.6 0.018 6.1E-07 57.5 3.5 24 201-224 5-28 (213)
441 1kgd_A CASK, peripheral plasma 94.6 0.019 6.4E-07 56.0 3.5 24 201-224 6-29 (180)
442 3sfz_A APAF-1, apoptotic pepti 94.6 0.056 1.9E-06 69.3 9.0 45 560-611 126-170 (1249)
443 2if2_A Dephospho-COA kinase; a 94.5 0.018 6.1E-07 57.3 3.4 32 590-627 3-34 (204)
444 2ius_A DNA translocase FTSK; n 94.5 0.17 5.7E-06 57.5 11.7 37 590-626 169-209 (512)
445 1nn5_A Similar to deoxythymidy 94.5 0.023 7.9E-07 56.9 4.2 28 200-227 9-36 (215)
446 3asz_A Uridine kinase; cytidin 94.5 0.029 9.8E-07 56.1 4.9 25 589-613 7-31 (211)
447 3ake_A Cytidylate kinase; CMP 94.5 0.016 5.4E-07 57.8 2.9 34 590-628 4-37 (208)
448 2q6t_A DNAB replication FORK h 94.5 0.079 2.7E-06 59.7 9.0 27 200-226 200-226 (444)
449 2r8r_A Sensor protein; KDPD, P 94.5 0.033 1.1E-06 55.9 5.2 31 198-228 4-34 (228)
450 1rj9_A FTSY, signal recognitio 94.5 0.037 1.3E-06 58.8 5.9 32 589-620 103-134 (304)
451 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.7E-07 56.2 3.5 34 590-627 4-37 (189)
452 1uj2_A Uridine-cytidine kinase 94.5 0.026 8.8E-07 58.4 4.5 45 201-247 23-67 (252)
453 2bbw_A Adenylate kinase 4, AK4 94.5 0.021 7E-07 58.8 3.7 25 200-224 27-51 (246)
454 2wwf_A Thymidilate kinase, put 94.4 0.02 7E-07 57.1 3.5 27 200-226 10-36 (212)
455 3tr0_A Guanylate kinase, GMP k 94.4 0.023 7.9E-07 56.4 3.7 23 590-612 9-31 (205)
456 2j41_A Guanylate kinase; GMP, 94.3 0.02 7E-07 56.8 3.3 23 590-612 8-30 (207)
457 1uf9_A TT1252 protein; P-loop, 94.3 0.024 8.3E-07 56.1 3.7 32 590-627 10-41 (203)
458 2v54_A DTMP kinase, thymidylat 94.3 0.023 7.9E-07 56.4 3.6 23 590-612 6-28 (204)
459 1lvg_A Guanylate kinase, GMP k 94.3 0.025 8.5E-07 56.1 3.7 25 200-224 4-28 (198)
460 3tau_A Guanylate kinase, GMP k 94.3 0.023 7.9E-07 56.8 3.5 25 200-224 8-32 (208)
461 2v54_A DTMP kinase, thymidylat 94.2 0.02 6.8E-07 56.8 2.9 25 200-224 4-28 (204)
462 2gza_A Type IV secretion syste 94.2 0.056 1.9E-06 59.0 6.6 33 590-623 177-209 (361)
463 1w36_D RECD, exodeoxyribonucle 94.2 0.15 5.3E-06 59.7 10.8 27 200-226 164-190 (608)
464 4e22_A Cytidylate kinase; P-lo 94.2 0.034 1.2E-06 57.4 4.7 25 200-224 27-51 (252)
465 1svm_A Large T antigen; AAA+ f 94.1 0.052 1.8E-06 59.4 6.2 26 589-614 170-195 (377)
466 3p32_A Probable GTPase RV1496/ 94.1 0.18 6E-06 54.9 10.5 41 187-227 64-106 (355)
467 1jjv_A Dephospho-COA kinase; P 94.1 0.017 6E-07 57.5 2.3 21 202-222 4-24 (206)
468 3ake_A Cytidylate kinase; CMP 94.1 0.033 1.1E-06 55.4 4.3 23 202-224 4-26 (208)
469 1a7j_A Phosphoribulokinase; tr 94.1 0.018 6E-07 61.0 2.4 39 590-628 7-45 (290)
470 2bdt_A BH3686; alpha-beta prot 94.1 0.024 8.2E-07 55.6 3.2 22 202-223 4-25 (189)
471 2zts_A Putative uncharacterize 94.1 0.15 5.1E-06 52.0 9.5 25 199-223 29-53 (251)
472 1htw_A HI0065; nucleotide-bind 94.1 0.039 1.3E-06 52.5 4.5 26 587-612 32-57 (158)
473 2px0_A Flagellar biosynthesis 94.1 0.046 1.6E-06 57.9 5.6 95 589-685 106-209 (296)
474 1lvg_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 56.2 3.1 23 590-612 6-28 (198)
475 3e2i_A Thymidine kinase; Zn-bi 94.1 0.052 1.8E-06 53.9 5.4 95 590-687 30-128 (219)
476 3llm_A ATP-dependent RNA helic 94.1 0.12 4E-06 52.7 8.4 22 200-221 76-97 (235)
477 2r6a_A DNAB helicase, replicat 94.1 0.057 1.9E-06 61.1 6.6 36 589-624 204-240 (454)
478 1xjc_A MOBB protein homolog; s 94.0 0.042 1.4E-06 52.8 4.6 35 590-624 6-40 (169)
479 3ney_A 55 kDa erythrocyte memb 94.0 0.031 1.1E-06 55.1 3.8 23 590-612 21-43 (197)
480 2f6r_A COA synthase, bifunctio 94.0 0.026 8.9E-07 59.4 3.4 32 590-627 77-108 (281)
481 2ffh_A Protein (FFH); SRP54, s 94.0 0.29 9.8E-06 54.3 11.9 41 587-627 97-137 (425)
482 2j41_A Guanylate kinase; GMP, 94.0 0.029 9.9E-07 55.7 3.5 25 200-224 6-30 (207)
483 2qmh_A HPR kinase/phosphorylas 94.0 0.025 8.5E-07 55.5 2.8 34 590-627 36-69 (205)
484 3a00_A Guanylate kinase, GMP k 94.0 0.026 8.9E-07 55.3 3.1 24 590-613 3-26 (186)
485 3a00_A Guanylate kinase, GMP k 93.9 0.03 1E-06 54.8 3.5 24 202-225 3-26 (186)
486 1jjv_A Dephospho-COA kinase; P 93.9 0.026 8.8E-07 56.2 3.0 32 590-627 4-35 (206)
487 2i1q_A DNA repair and recombin 93.9 0.11 3.9E-06 55.6 8.3 26 199-224 97-122 (322)
488 3zvl_A Bifunctional polynucleo 93.9 0.031 1.1E-06 62.4 4.0 32 590-626 260-291 (416)
489 1q3t_A Cytidylate kinase; nucl 93.9 0.033 1.1E-06 56.9 3.8 34 590-628 18-51 (236)
490 3lxx_A GTPase IMAP family memb 93.8 0.046 1.6E-06 55.8 4.9 25 199-223 28-52 (239)
491 3tr0_A Guanylate kinase, GMP k 93.8 0.034 1.1E-06 55.2 3.7 25 200-224 7-31 (205)
492 2oap_1 GSPE-2, type II secreti 93.8 0.06 2.1E-06 61.5 6.2 33 590-623 262-294 (511)
493 2h92_A Cytidylate kinase; ross 93.8 0.033 1.1E-06 56.0 3.7 25 200-224 3-27 (219)
494 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.067 2.3E-06 57.6 6.2 26 199-224 170-195 (330)
495 1gtv_A TMK, thymidylate kinase 93.8 0.021 7.2E-07 57.1 2.0 25 590-614 2-26 (214)
496 1bif_A 6-phosphofructo-2-kinas 93.7 0.12 4E-06 58.7 8.4 29 199-227 38-66 (469)
497 1x6v_B Bifunctional 3'-phospho 93.7 0.048 1.6E-06 63.5 5.2 35 590-624 54-88 (630)
498 1svm_A Large T antigen; AAA+ f 93.7 0.057 1.9E-06 59.1 5.5 27 198-224 167-193 (377)
499 3lxw_A GTPase IMAP family memb 93.6 0.18 6E-06 51.8 8.8 24 199-222 20-43 (247)
500 1q3t_A Cytidylate kinase; nucl 93.6 0.058 2E-06 55.0 5.0 25 200-224 16-40 (236)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.4e-101 Score=955.00 Aligned_cols=834 Identities=53% Similarity=0.856 Sum_probs=716.6
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||.+|+|||||+|||++++|.+.++|+++|+|. +.++..++..+++.|...+.+
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~--~~l~~~l~~~l~~~p~~~~~~ 78 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADP--KALKELQERELARLPKVEGAE 78 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCH--HHHHHHHHHHHHTSCCCCGGG
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCH--HHHHHHHHHHHhhCCCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999 999999999999988764333
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccchhHHHHHcCCCHHHHHHHHHHhhccCCCcccCCCCCcc
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQIGDLFKEAGVAVARVKSEVEKLRGKEGRKVESASGDTT 160 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
..++||+.++++|+.|+.+|..+|+.+|+++|+++|+++++... ++...+...+...++. .+..+..+...
T Consensus 79 ~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 149 (854)
T 1qvr_A 79 VGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGL-------PGLEALKGALKELRGG--RTVQTEHAEST 149 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTS-------CCHHHHHHHHTSSCSC--CSSCSSCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccccc-------CCHHHHHHHHHHhccc--ccccccccccc
Confidence 56899999999999999999999999999999999999866431 6788887776555432 22333334456
Q ss_pred hhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 046258 161 FQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRL 238 (900)
Q Consensus 161 ~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~ 238 (900)
++.|.+|+.||+..+ +.+++++|++.+++++++++.++.++|++|+||||||||++|+++|+.+..+.+|..+++.++
T Consensus 150 ~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 150 YNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp CSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred chhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 789999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHH
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLE 318 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~ 318 (900)
+.++++.+.+|..+.|+++.+++.++..+...++++||||||+|.+.+.+...+..++.+.|+++++++.+++|++||..
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~ 309 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLD 309 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHH
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCch
Confidence 99999999999999999999999999998876668999999999999887766778889999999999999999999999
Q ss_pred HHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
++.+ +..+++|.+||+.+.++.|+.+++.+|++.+..+|+.++++.++++++..++.++.+|++++++|+++++++|++
T Consensus 310 ~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea 388 (854)
T 1qvr_A 310 EYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 388 (854)
T ss_dssp HHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHH
Confidence 9877 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 399 CANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLKQ 478 (900)
Q Consensus 399 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 478 (900)
++..++.....|..++.+++.+..++.+...+.++.+..+.+++.++++++..++++++.+...|..+.....+++.+++
T Consensus 389 ~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (854)
T 1qvr_A 389 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH 468 (854)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccChh---
Q 046258 479 KREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQN--- 555 (900)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~--- 555 (900)
++++.......+++..++..+..+.|..++.+.+++..++.. ....+++.++++.+++..++++|+++|..++...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~ 547 (854)
T 1qvr_A 469 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGERE 547 (854)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHH
T ss_pred HHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHH
Confidence 999988888888888999999999999999999999887643 2345788999999999999999999987766332
Q ss_pred --------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 --------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 --------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
....++|++.+++.+...+.+.++|+..|++|.+++||+||||||||++|++||+.+++.+.+|+.+||+++
T Consensus 548 ~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 548 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp HHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 235679999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred ccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEc
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMT 707 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~t 707 (900)
.+.+..+.++|.++||+|+..++.++++++.++++|||||||+++++++++.|+++|++|+++++.|+.++|++++||+|
T Consensus 628 ~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 628 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp CSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred cchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 046258 708 SNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVT 787 (900)
Q Consensus 708 sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~ 787 (900)
||.++..+.+..........+.+.+.+.+...|+|+|++||+.++.|.||+.+++..|+..++.++..++...++.+.++
T Consensus 708 sn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 708 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELT 787 (854)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred cCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 99988766431101112344566677777899999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEE
Q 046258 788 DAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYR 849 (900)
Q Consensus 788 ~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~ 849 (900)
++++++|+.++|++.+|+|+|+++|++.+..++++.|+.+++++|++|.|++++ +++.|.
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 847 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP--AGLVFA 847 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECCT--TSCEEE
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEEC--CEEEEE
Confidence 999999999999877889999999999999999999999999999999999874 346654
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3e-92 Score=863.46 Aligned_cols=736 Identities=45% Similarity=0.748 Sum_probs=602.7
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||++|+|||||+|||.+++|.+.++|+++|+|+ +.+++++++.+++.|.. +
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~--~~l~~~l~~~l~~~~~~---~ 75 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS--EKIQKEVESLIGRGQEM---S 75 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCH--HHHHHHHHTTSCCCCTT---C
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH--HHHHHHHHHHhccCCCC---C
Confidence 899999999999999999999999999999999999999999999999999999999 99999999999887754 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHHhhccCCCcccC----
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVES---- 154 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~---- 154 (900)
..++||+.++++|+.|+.+|..+|+.+|+++||++|++.++. ...+|.++|++...+...+....+.. ...+
T Consensus 76 ~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~--~~~~~~~~ 153 (758)
T 3pxi_A 76 QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN--ETGSSAAG 153 (758)
T ss_dssp SSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCC--CTTC----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCC--cccccccc
Confidence 468999999999999999999999999999999999998653 56899999999999999887665432 1111
Q ss_pred CCCCcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCC
Q 046258 155 ASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSN 232 (900)
Q Consensus 155 ~~~~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~ 232 (900)
..+...++.|.+|+.||+..+ +.+++++|++++++++++++.++.++|+||+||||||||++|++||+.+.++++|..
T Consensus 154 ~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~ 233 (758)
T 3pxi_A 154 TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (758)
T ss_dssp -CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred cccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChh
Confidence 123345789999999999988 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEE
Q 046258 233 LADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCI 312 (900)
Q Consensus 233 l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI 312 (900)
+.+++++.+|+ |.+|.|+++.+++.+++.+.... ++||||| +..++.+.|+++++++.+++|
T Consensus 234 l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~-~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I 295 (758)
T 3pxi_A 234 LRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAG-NIILFID------------AAIDASNILKPSLARGELQCI 295 (758)
T ss_dssp TSSCCEECC---------------CTTHHHHHHHHHTCC-CCEEEEC------------C--------CCCTTSSSCEEE
T ss_pred hcCCeEEEecc-----cccccchHHHHHHHHHHHHHhcC-CEEEEEc------------CchhHHHHHHHHHhcCCEEEE
Confidence 99999999998 67789999999999999988754 7789999 345677899999999999999
Q ss_pred EecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHH
Q 046258 313 GATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
++||+.++.+++..+++|.+||+.|.++.|+.+++..|++.+..+|+.++++.++++++..++.++.+|++++++|++++
T Consensus 296 ~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred eCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 393 DLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDE 472 (900)
Q Consensus 393 ~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 472 (900)
+++|.+++.+.+.....|..+..+++.+..++.+...+....+ .++..+++.+...+
T Consensus 376 ~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-------------------- 432 (758)
T 3pxi_A 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRL-------------------- 432 (758)
T ss_dssp HHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHH--------------------
Confidence 9999999999998888888888888776666554433222111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCcccc
Q 046258 473 IRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRL 552 (900)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 552 (900)
.+++..+...+.........+++.+++..++++|+++|+.++
T Consensus 433 --------------------------------------~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~ 474 (758)
T 3pxi_A 433 --------------------------------------REQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKI 474 (758)
T ss_dssp --------------------------------------HHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------
T ss_pred --------------------------------------HHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHh
Confidence 111222221111111234567889999999999999998766
Q ss_pred Chh-----------HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 553 GQN-----------EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 553 ~~~-----------~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
... ....++|++.+++.+..++.+.+.++..|.+|.+++||+||||||||++|+++|+.+++++.+|++
T Consensus 475 ~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 475 AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred hHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 543 334589999999999999999999999999999999999999999999999999999998899999
Q ss_pred ecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 622 IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 622 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
+||++|.+.+..+ ++.++++++..+++|||||||+++++++++.|+++|++|++++..|+.+++.+
T Consensus 555 i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 555 IDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp EEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT
T ss_pred Eechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCC
Confidence 9999998765433 46788999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
++||+|||.++.. ...+...+...|+|+|++||+.+|.|+||+.+++..|+..++.++.+++...+
T Consensus 621 ~~iI~ttn~~~~~--------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 686 (758)
T 3pxi_A 621 TILIMTSNVGASE--------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQD 686 (758)
T ss_dssp CEEEEEESSSTTC--------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeCCCChhh--------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999987532 12333455677999999999999999999999999999999999999998888
Q ss_pred CccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEEEec
Q 046258 782 VALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRVQK 852 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 852 (900)
+.+.++++++++|++.+|+..+|+|+|+++|++.+..++++.++.+.+.+|++|.|++++ +++.|....
T Consensus 687 ~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 755 (758)
T 3pxi_A 687 LSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVED--GEFVVKTTA 755 (758)
T ss_dssp CEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEESS--SSEEEEECC
T ss_pred CeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEEC--CEEEEEEec
Confidence 889999999999999888888899999999999999999999999999999999999975 467776543
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3.1e-88 Score=829.99 Aligned_cols=719 Identities=40% Similarity=0.664 Sum_probs=618.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhc-CCCCCC--CCCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKK-LPSQTP--APDE 82 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~-~~~~~~--~~~~ 82 (900)
||++++++|..|+++|+++||.+|+|||||+|||+++ .+.++|+++|+|. +.++++++.++++ .|...+ ....
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~--~~l~~~l~~~l~~~~p~~~~~~~~~~ 77 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDL--VALRQELEAFIEQTTPVLPASEEERD 77 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCH--HHHHHHHHHHHHHHSCBCCCSSSCCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCH--HHHHHHHHHHHhccCCCCCCccccCC
Confidence 9999999999999999999999999999999999864 4889999999999 9999999999987 776432 1256
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHHHHhhccCC----Cc--cc-
Q 046258 83 IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVEKLRGKEG----RK--VE- 153 (900)
Q Consensus 83 ~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~~~~~~~~~----~~--~~- 153 (900)
+++|+.++++|+.|+.+|...|+.+|+++||++|++.++ .+..+|...|++...+.+.+.......+ .. ..
T Consensus 78 ~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (758)
T 1r6b_X 78 TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQP 157 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC----------------
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccccc
Confidence 899999999999999999999999999999999999865 3578899999999998887644321110 00 00
Q ss_pred C-CCCCcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCC
Q 046258 154 S-ASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVP 230 (900)
Q Consensus 154 ~-~~~~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p 230 (900)
+ ..+..+++.|.+|+.+|+..+ +.+++++|++.++++++++|.++.++|+||+||||||||++|+++|+.+..+.+|
T Consensus 158 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~ 237 (758)
T 1r6b_X 158 NSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP 237 (758)
T ss_dssp -----------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSC
T ss_pred cccccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 0 112235678999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhcCcE
Q 046258 231 SNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQL 309 (900)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g~i 309 (900)
..+.+++++.++++.+..|.++.|.++.+++.+++.+.... ++||||||+|.+.+.+.. .+..++.+.|+++++++.+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~ 316 (758)
T 1r6b_X 238 EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI 316 (758)
T ss_dssp GGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCC
T ss_pred hhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCe
Confidence 88889999999999999988999999999999999887654 688999999999987765 4678889999999999999
Q ss_pred EEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 310 RCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 310 rvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
++|++|+..++.+++..+++|.+||+.+.+..|+.+++.+|++.+...|+.++++.++++++..++.++.+|+.++++|+
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~ 396 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTH
T ss_pred EEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCch
Confidence 99999999998888888999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 390 KAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKER 469 (900)
Q Consensus 390 ~a~~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 469 (900)
++++++|++++..++....
T Consensus 397 ~~i~lld~a~~~~~~~~~~------------------------------------------------------------- 415 (758)
T 1r6b_X 397 KAIDVIDEAGARARLMPVS------------------------------------------------------------- 415 (758)
T ss_dssp HHHHHHHHHHHHHHHSSSC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccc-------------------------------------------------------------
Confidence 9999999998765432100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCc
Q 046258 470 IDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPV 549 (900)
Q Consensus 470 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 549 (900)
.....++.+++..+++.++++|+
T Consensus 416 ---------------------------------------------------------~~~~~v~~~di~~~~~~~~~ip~ 438 (758)
T 1r6b_X 416 ---------------------------------------------------------KRKKTVNVADIESVVARIARIPE 438 (758)
T ss_dssp ---------------------------------------------------------CCCCSCCHHHHHHHHHHHSCCCC
T ss_pred ---------------------------------------------------------ccCCccCHHHHHHHHHHhcCCCc
Confidence 00134667778888888888887
Q ss_pred cccChhH-----------HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCc
Q 046258 550 TRLGQNE-----------KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENL 618 (900)
Q Consensus 550 ~~~~~~~-----------~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~ 618 (900)
.++.... ...++|++.+++.+..++...++|+..+++|.+++||+||||||||++|+++|+.+. .+
T Consensus 439 ~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~---~~ 515 (758)
T 1r6b_X 439 KSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IE 515 (758)
T ss_dssp CCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT---CE
T ss_pred cccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CC
Confidence 7665432 234779999999999999999999999999999999999999999999999999994 59
Q ss_pred eeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceee
Q 046258 619 LVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 619 ~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
|+++||+++.+.+.+++++|+++||+|+++++.++++++.++++|||||||+++++++++.|+++|++|+++|..|+.++
T Consensus 516 ~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 516 LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp EEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred EEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLA 778 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~ 778 (900)
|.+++||+|||.+...+.....+... ......+.+.+...|+|+|++||+.+|.|+||+.+++..|+..++.++..++.
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIH-QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp CTTEEEEEEECSSCC------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccc-cchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987665432111111 11123445667789999999999999999999999999999999999999998
Q ss_pred hcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEEEe
Q 046258 779 ERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRVQ 851 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~ 851 (900)
..++.+.++++++++|++++|++++|+|+|+++|++.+..++++.++.|.+..|+++.|+++++++++.|...
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQ 747 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEEGGGTEEEEEEE
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEeCCceeEEEEEc
Confidence 8888899999999999999999999999999999999999999999999999999999999865556887664
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=2.8e-57 Score=521.71 Aligned_cols=438 Identities=40% Similarity=0.682 Sum_probs=364.9
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||++|+|||||+|||.+++|.+.++|+++|+|. +.+++.+++.+++.|.. +
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~--~~l~~~l~~~l~~~~~~---~ 75 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS--EKIQKEVESLIGRGQEM---S 75 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCH--HHHHHHHHTTSCCCCTT---C
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCH--HHHHHHHHHHhcccCCC---C
Confidence 899999999999999999999999999999999999999999999999999999999 99999999998877654 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHHhhccCCCccc--CCC
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGKEGRKVE--SAS 156 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~--~~~ 156 (900)
..++||+.++++|+.|+.+|..+|+.+|+++||++|++.++. ...+|..+|++...++..+....+....... +..
T Consensus 76 ~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~ 155 (468)
T 3pxg_A 76 QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTN 155 (468)
T ss_dssp SSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----C
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCcccccccCcC
Confidence 358999999999999999999999999999999999998653 5789999999999999988766543210000 112
Q ss_pred CCcchhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCC
Q 046258 157 GDTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA 234 (900)
Q Consensus 157 ~~~~~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~ 234 (900)
+....+.|.+|+.||+..+ +.++++||++.+++++++++.++.++|+||+||||||||++|++||+.+.++++|..+.
T Consensus 156 ~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 156 SNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred CccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 2345678999999999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEe
Q 046258 235 DVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGA 314 (900)
Q Consensus 235 ~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~a 314 (900)
+.+|+.+||+ ..+.|+++.+++.+++.+...+ ++||||| +..++.+.|+++|++|.+++|++
T Consensus 236 ~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~a 297 (468)
T 3pxg_A 236 DKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAG-NIILFID------------AAIDASNILKPSLARGELQCIGA 297 (468)
T ss_dssp SCCEECC---------------CTTHHHHHHHHHTCC-CCEEEEC------------C--------CCCTTSSSCEEEEE
T ss_pred CCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcC-CeEEEEe------------CchhHHHHHHHhhcCCCEEEEec
Confidence 9999999998 4678999999999999888754 6789999 34567789999999999999999
Q ss_pred cCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
||..++.+++..+++|.+||++|.++.|+.+++..|++.+..+|+.++++.++++++..++.++.+|++++++|++++++
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 395 VDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYK 464 (900)
Q Consensus 395 ld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 464 (900)
+|.+++..++.....|..+..++..+..++.+....... ..-++..+++.+...+++++..+..+|.
T Consensus 378 l~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~---~d~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (468)
T 3pxg_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQS---QEFEKAASLRDTEQRLREQVEDTKKSWK 444 (468)
T ss_dssp HHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999889999998888877776554332221 1124455555556556666555555554
No 5
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=5.8e-36 Score=327.75 Aligned_cols=294 Identities=58% Similarity=0.967 Sum_probs=265.1
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 554 QNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 554 ~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
......++|++.+++.+...+.....++..+.+|.+++||+||||||||++|++||+.+.+...+++.++|+.+......
T Consensus 13 ~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 13 EELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 33455688999999999999999999999999999999999999999999999999999887889999999999888888
Q ss_pred ccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcH
Q 046258 634 SRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAE 713 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~ 713 (900)
+.++|.+++|+|+...+.+.+++..++++|||||||+++++++++.|+++|+++.+++..+..+++++++||+|||.+..
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 89999999999999888999999999999999999999999999999999999999998899999999999999999887
Q ss_pred HHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Q 046258 714 HLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDI 793 (900)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (900)
.+.+........+.+.+.+.+.+...|+|+|++||+.++.|.|++.+++..|+..++.++...+...+..+.++++++++
T Consensus 173 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 4fcw_A 173 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDF 252 (311)
T ss_dssp HHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHH
Confidence 77654333334445566666667889999999999999999999999999999999999999888777789999999999
Q ss_pred HHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEecCCCCeEEEE
Q 046258 794 VLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYR 849 (900)
Q Consensus 794 l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~~~~~~~~~~ 849 (900)
|.+++|+..+|+|+|++++++.+..++++.++.+++++|+++.|++.++ ++.+.
T Consensus 253 l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~--~~~~~ 306 (311)
T 4fcw_A 253 LAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPA--GLVFA 306 (311)
T ss_dssp HHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECSS--SEEEE
T ss_pred HHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEECC--eEEEE
Confidence 9999997677799999999999999999999999999999999999864 45544
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.6e-37 Score=364.78 Aligned_cols=458 Identities=20% Similarity=0.293 Sum_probs=285.1
Q ss_pred CCCCCCCchHHHHHHHHHHc----c---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILS----R---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~----~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+++++.|.+..++.|.+.+. . ..+.++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~ 271 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLING 271 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEh
Confidence 46678888887777766542 1 346679999999999999999999987 888999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC---hhhHHHhHhhhhh----cCcEEEEEecC
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG---SMDAANLFKPMLA----RGQLRCIGATT 316 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~g~irvI~att 316 (900)
+.+.. +|.|+.+..++.+|..+.... |+||||||+|.|.+.+.... .....+.|+..|. ++.+.||++||
T Consensus 272 ~~l~s--k~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 272 PEIMS--KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHHS--SCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred HHhhc--ccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 99986 678999999999999887655 89999999999998765422 2334566665553 56799999998
Q ss_pred HHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 317 LEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+.+. +|++|+| ||+. |+++.|+..+|.+||+.+...+... ++..+..++..+.+| .+.+...
T Consensus 349 ~~d~-----LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~T~Gf-----sgaDL~~ 413 (806)
T 3cf2_A 349 RPNS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGH-----VGADLAA 413 (806)
T ss_dssp STTT-----SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHHCCSC-----CHHHHHH
T ss_pred Chhh-----cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhcCCC-----CHHHHHH
Confidence 8764 8999999 9986 8999999999999998765432111 222356677777666 3447777
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 394 LVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEI 473 (900)
Q Consensus 394 Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~ 473 (900)
|+.+|+...... ... .+.........+
T Consensus 414 Lv~eA~~~A~~r-------------~~~-------~i~~~~~~~~~e--------------------------------- 440 (806)
T 3cf2_A 414 LCSEAALQAIRK-------------KMD-------LIDLEDETIDAE--------------------------------- 440 (806)
T ss_dssp HHHHHHHHHHHH-------------HHH-------HGGGTCCCCSHH---------------------------------
T ss_pred HHHHHHHHHHHh-------------ccc-------cccccccccchh---------------------------------
Confidence 777765432110 000 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCccccC
Q 046258 474 RRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRLG 553 (900)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 553 (900)
....+ .-...++...+.................+.+
T Consensus 441 ------------------------~~~~~-~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w------------------- 476 (806)
T 3cf2_A 441 ------------------------VMNSL-AVTMDDFRWALSQSNPSALRETVVEVPQVTW------------------- 476 (806)
T ss_dssp ------------------------HHHHC-EECTTHHHHHHSSSSCCCCCCCCCBCCCCCS-------------------
T ss_pred ------------------------hhccc-eeeHHHHHHHHHhCCCcccccccccCCCCCH-------------------
Confidence 00000 0000011111211221110000000111222
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHHHhcC----CCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 554 QNEKERLIGLAEAVNAVAESVLRSRAG----LGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 554 ~~~~~~l~g~~~av~~l~~~i~~~~~g----~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
..+.|++++.+.+.+.+...... .....+|...+||+||||||||++|+++|..+.. +|+.++.+++..
T Consensus 477 ----~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~---~f~~v~~~~l~s 549 (806)
T 3cf2_A 477 ----EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGPELLT 549 (806)
T ss_dssp ----TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC---EEEECCHHHHHT
T ss_pred ----HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC---ceEEeccchhhc
Confidence 22445555555555544321000 0011233447999999999999999999999954 899998877543
Q ss_pred ccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecCC
Q 046258 630 QHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDGQ 693 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~~ 693 (900)
.|+|..+. ..++...++...|||||||||.+-+ .+.+.||..||.-.
T Consensus 550 ------------~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~----- 612 (806)
T 3cf2_A 550 ------------MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 612 (806)
T ss_dssp ------------TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----
T ss_pred ------------cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----
Confidence 26666653 3355556666779999999998632 26789999998421
Q ss_pred CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHH
Q 046258 694 GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMK 771 (900)
Q Consensus 694 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~ 771 (900)
...++++|+|||.+ ..++|+|+. |||..|.|++++.++..+|++.++.
T Consensus 613 ----~~~~V~vi~aTN~p--------------------------~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 613 ----TKKNVFIIGATNRP--------------------------DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp ----SSSSEEEECC-CCS--------------------------SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred ----CCCCEEEEEeCCCc--------------------------hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 23568999999985 558999997 9999999999999999999988775
Q ss_pred HHHHHHHhcCCccccCHH-HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 772 DVAIRLAERGVALAVTDA-ALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
+. .++++ -++.|++. +..|...+|+.++..+...++-+.+..
T Consensus 663 ~~-----------~~~~~~dl~~la~~--t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 663 KS-----------PVAKDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp CC-------------CCC------------------CHHHHHHHHHHHHHHHHHC-
T ss_pred CC-----------CCCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 12221 24556543 345667899999999998888776643
No 7
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.97 E-value=5e-31 Score=307.92 Aligned_cols=349 Identities=22% Similarity=0.334 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCc
Q 046258 470 IDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPV 549 (900)
Q Consensus 470 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 549 (900)
..+++++++++++. .++......+.+++++++ .+.....+...+++|+++++++||
T Consensus 7 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~el~~l~-------~~~~~~~e~~~~~~~l~~~~~lp~ 62 (543)
T 3m6a_A 7 TGEVQTLTEKIEEA-----------------GMPDHVKETALKELNRYE-------KIPSSSAESSVIRNYIDWLVALPW 62 (543)
T ss_dssp CCTTTHHHHHHHSS-----------------SCCCHHHHHHHHHHHSSC-------CCSSSCTTTTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHHh-------cCCCCCchHhHHHHHHHHHhcCCC
Confidence 34566777777653 334444555788888887 444556677889999999999999
Q ss_pred cccCh----------hHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCce
Q 046258 550 TRLGQ----------NEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLL 619 (900)
Q Consensus 550 ~~~~~----------~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 619 (900)
.+... ...+.++|++.+.+.+...+......... +..+++|+||||||||++|++||..+.. ++
T Consensus 63 ~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~ 136 (543)
T 3m6a_A 63 TDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR---KF 136 (543)
T ss_dssp SCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC---EE
T ss_pred CccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC---Ce
Confidence 76433 24567899998888887766555443332 3347999999999999999999999954 89
Q ss_pred eEecccccccccccccccCCCCCCcccccccchhHHHHhC--CCeEEEEccccccCHH----HHHHHHHHhhCCe---ee
Q 046258 620 VRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR--PYSVVLFDEVEKAHIS----VFNTLLQVLDDGR---LT 690 (900)
Q Consensus 620 i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~--~~~vlllDEidk~~~~----~~~~Ll~~ld~g~---~~ 690 (900)
+.++|+.+.. .+.++|+...|+|+..+. +...+... .++|+|||||++++++ .++.|+++|+.+. +.
T Consensus 137 ~~i~~~~~~~---~~~~~g~~~~~ig~~~~~-~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~ 212 (543)
T 3m6a_A 137 VRISLGGVRD---ESEIRGHRRTYVGAMPGR-IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFS 212 (543)
T ss_dssp EEECCCC-----------------------C-HHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCC
T ss_pred EEEEecccch---hhhhhhHHHHHhccCchH-HHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceee
Confidence 9999988644 467788888888887654 33344433 5679999999999988 5599999998653 55
Q ss_pred cCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHH
Q 046258 691 DGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 691 d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
+.+ +..+++++++||+|||.. ..|+|+|++|| .+|.|++|+.+++..|+..+
T Consensus 213 ~~~~~~~~~~~~v~iI~ttN~~--------------------------~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 213 DHYIEETFDLSKVLFIATANNL--------------------------ATIPGPLRDRM-EIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp CSSSCCCCBCSSCEEEEECSST--------------------------TTSCHHHHHHE-EEEECCCCCHHHHHHHHHHT
T ss_pred cccCCeeecccceEEEeccCcc--------------------------ccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHH
Confidence 554 677888999999999983 56899999999 68999999999999999998
Q ss_pred HHHHHHHHHhcCC---ccccCHHHHHHHHH-cCCCCCCCchHHHHHHHHHHHHHHHHHHHccc----CCC----------
Q 046258 770 MKDVAIRLAERGV---ALAVTDAALDIVLA-ESYDPIYGARPIRRWLEKKVVTELSRMLVREE----IDE---------- 831 (900)
Q Consensus 770 l~~~~~~~~~~~~---~~~~~~~a~~~l~~-~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~----~~~---------- 831 (900)
+. .+.+...|+ .+.++++++..|+. +.|+ .|+|+|++.|++.+.......+.... +..
T Consensus 266 l~--~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~--~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 266 LL--PKQIKEHGLKKSNLQLRDQAILDIIRYYTRE--AGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HH--HHHHHHTTCCGGGCEECHHHHHHHHHHHCCC--SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HH--HHHHHHcCCCcccccCCHHHHHHHHHhCChh--hchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 85 444445555 57899999999876 5554 56999999998877664444332211 000
Q ss_pred -------------------------CCEEEEEec--CCCCeEEEEEecCCcccccccc-------------------ccc
Q 046258 832 -------------------------NSTVYIDAS--PKGDNLVYRVQKNGGFVDAATG-------------------RKS 865 (900)
Q Consensus 832 -------------------------~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 865 (900)
|..+.|++. +|.+.+.+++..+++|+++... ...
T Consensus 342 ~~~~e~~~~~~~~g~v~g~a~~~~~g~~~~ve~~~~~g~~~~~~~G~~~~~~~es~~~a~~~v~~~~~~~g~~~~~~~~~ 421 (543)
T 3m6a_A 342 IFRYGQAETEDQVGVVTGLAYTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKY 421 (543)
T ss_dssp CSCCSTTTCCCBSSEEEEEEEETTEEEEEEEEEEEESSCSCEEEEESCCHHHHHHHHHHHHHHTSSCGGGSSCSSCTTTC
T ss_pred ccCchhhhccccccccccccccCCCccceeeEEEeeCCCCceEEecCchHHHHHHHHHHHHHHHHHHHHcCCCccccCCc
Confidence 444555544 7899999999999998888732 245
Q ss_pred cccccCCCC--CCCCchhHH
Q 046258 866 DVLIQIPNG--PRTDPSQAV 883 (900)
Q Consensus 866 ~~~~~~p~~--~~~~~~~~~ 883 (900)
|+|+|+|.| |||||||--
T Consensus 422 di~v~~~~g~~~k~gpsa~l 441 (543)
T 3m6a_A 422 DIHIHVPEGAVPKDGPAAGI 441 (543)
T ss_dssp EEEEEECTTBCGGGGGGGHH
T ss_pred ceEEEeCCCCCCCCCchhHH
Confidence 899999999 999999854
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.3e-30 Score=317.55 Aligned_cols=457 Identities=20% Similarity=0.293 Sum_probs=274.3
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-.+++++|.+.+++++.+.+.. ..+.++||+||||||||++|++|+..+ +..++.++
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEE
Confidence 4567899999999999887753 456679999999999999999999887 66799999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC-Ch--hhHHHhHhhhhh----cCcEEEEEec
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-GS--MDAANLFKPMLA----RGQLRCIGAT 315 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~-~~--~~~~~~L~~~l~----~g~irvI~at 315 (900)
+..+.. .+.|+++..++.++..+.... ++++||||++.+.+..... +. ....+.|+.++. +..+.+|++|
T Consensus 271 ~~~l~~--~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~at 347 (806)
T 1ypw_A 271 GPEIMS--KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHHSS--SSTTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEEC
T ss_pred chHhhh--hhhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEeccc
Confidence 988875 567899999999999887665 7889999999998865442 22 223455555554 5578999999
Q ss_pred CHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHH
Q 046258 316 TLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
++.. ..++++.+ ||.. +.+..|+.+++.++++.+...+..... ..+..++..+..|. ..+..
T Consensus 348 n~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~-----~~l~~la~~t~g~~-----g~dl~ 412 (806)
T 1ypw_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD-----VDLEQVANETHGHV-----GADLA 412 (806)
T ss_dssp SCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTT-----CCTHHHHHSCSSCC-----HHHHH
T ss_pred CCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCccc-----chhHHHHHhhcCcc-----hHHHH
Confidence 8764 37899988 8965 788999999999999877655332221 12333444443332 22333
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 393 DLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDE 472 (900)
Q Consensus 393 ~Lld~a~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 472 (900)
.++.+++............ .+ . ..
T Consensus 413 ~l~~ea~~~a~r~~~~~i~-----------~~--~--------------------------~~----------------- 436 (806)
T 1ypw_A 413 ALCSEAALQAIRKKMDLID-----------LE--D--------------------------ET----------------- 436 (806)
T ss_dssp HHHHHHHHHHHHHTTTTTS-----------CH--H--------------------------HH-----------------
T ss_pred HHHHHHHHHHHhhhccccc-----------hh--h--------------------------hc-----------------
Confidence 3333332211000000000 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccccCCCChhhHHHHHHHHhcCCcccc
Q 046258 473 IRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWTGIPVTRL 552 (900)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 552 (900)
+.. +. ...+ .....++...+.......... .. ...
T Consensus 437 -------~~~--------~~------~~~~-~v~~~d~~~al~~~~~s~~~~-~~----------------------~~~ 471 (806)
T 1ypw_A 437 -------IDA--------EV------MNSL-AVTMDDFRWALSQSNPSALRE-TV----------------------VEV 471 (806)
T ss_dssp -------CCH--------HH------HTTC-CCCTTHHHHHHHHSCCCCCCC-CC----------------------CCC
T ss_pred -------cch--------hh------hhhh-hhhhhhhhccccccCchhhhh-hc----------------------ccC
Confidence 000 00 0000 000001111111111100000 00 000
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHh----cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSR----AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~----~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
....+..+.|++.+.+.+.+.+.... ........|..++||+||||||||+||++||..+. .+++.++++++.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~ 548 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELL 548 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSST
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHhh
Confidence 00011223444444444443332110 00111123445799999999999999999999994 489999988764
Q ss_pred cccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhCCeeecC
Q 046258 629 EQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH--------------ISVFNTLLQVLDDGRLTDG 692 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~--------------~~~~~~Ll~~ld~g~~~d~ 692 (900)
.. |+|..+. +.+++..+....+|+||||||++. ..+++.|++.|+...
T Consensus 549 ~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---- 612 (806)
T 1ypw_A 549 TM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---- 612 (806)
T ss_dssp TC------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------
T ss_pred hh------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc----
Confidence 32 4454432 234444455556899999999852 346788888887532
Q ss_pred CCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHH
Q 046258 693 QGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 693 ~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
...+++||+|||.. ..++|+|++ ||+.++.|++++.++...|++.++
T Consensus 613 -----~~~~v~vI~tTN~~--------------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 -----TKKNVFIIGATNRP--------------------------DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp --------CCBCCCCCBSC--------------------------GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred -----ccCCeEEEEecCCc--------------------------ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 33678999999984 457899998 999999999999999999999887
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRM 823 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~ 823 (900)
....- . .. +. ++.|+.. +..|..++|+.++..+...++.+.
T Consensus 662 ~~~~~--~-~~--~~-----l~~la~~--t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 662 RKSPV--A-KD--VD-----LEFLAKM--TNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCC-------C--CC-----CSCSCGG--GSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCC--C-cc--cC-----HHHHHHh--ccccCHHHHHHHHHHHHHHHHHHH
Confidence 63210 0 00 11 1122221 223456788887777666665443
No 9
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.94 E-value=8e-28 Score=268.65 Aligned_cols=253 Identities=25% Similarity=0.366 Sum_probs=179.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH----hcCCCCC--CCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS----RAGLGRP--QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~----~~g~~~~--~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
..+.++|++.+++.+..++... ..+.... ..|..++||+||||||||++|++||+.+. .+|+.++|+.+..
T Consensus 13 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~~~~~l~~ 89 (363)
T 3hws_A 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD---VPFTMADATTLTE 89 (363)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHTT
T ss_pred HHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEechHHhcc
Confidence 3456799999999998888533 2222211 22445799999999999999999999994 4999999987543
Q ss_pred ccccccccCCCCCCcccccccchhHHHHh-------CCCeEEEEccccccCHH--------------HHHHHHHHhhCCe
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVRR-------RPYSVVLFDEVEKAHIS--------------VFNTLLQVLDDGR 688 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~vlllDEidk~~~~--------------~~~~Ll~~ld~g~ 688 (900)
.+|+|+...+.+...+.. ++++||||||||++++. +++.|+++|+ |.
T Consensus 90 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~ 157 (363)
T 3hws_A 90 -----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GT 157 (363)
T ss_dssp -----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC
T ss_pred -----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cc
Confidence 345666545556655543 35689999999999877 9999999999 55
Q ss_pred e---ecCCCceeecCCeEEEEccCC---------CcHHHhcccCCc----------------cchHHHHHHHH--HHHHh
Q 046258 689 L---TDGQGRTVDFRNTVIIMTSNL---------GAEHLLSGMMGK----------------VTMQVARDQVL--QEVRK 738 (900)
Q Consensus 689 ~---~d~~g~~~~~~~~~iI~tsn~---------~~~~~~~~~~~~----------------~~~~~~~~~~~--~~~~~ 738 (900)
+ .+..|+.+++.++++|+|||. +.+.+.....+. .....+.+.+. .....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~ 237 (363)
T 3hws_A 158 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 (363)
T ss_dssp ----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHH
T ss_pred eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHc
Confidence 3 445566555555555555555 665554321110 01111111111 11234
Q ss_pred cccHHHHhcccceeecCCCCHHHHHHHHHH----HHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 046258 739 HFRPELLNRLDEIVVFDPLSHEQLRKVARL----QMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEK 814 (900)
Q Consensus 739 ~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~----~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~ 814 (900)
.|+|+|++||+.++.|.||+.+++.+|+.. ++.++.+.+...++.+.++++++++|+.++|++++|+|+|+++|++
T Consensus 238 ~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~ 317 (363)
T 3hws_A 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEA 317 (363)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred CCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHH
Confidence 499999999999999999999999999998 7888888888778889999999999999889999999999999999
Q ss_pred HHHHHHHHH
Q 046258 815 KVVTELSRM 823 (900)
Q Consensus 815 ~i~~~l~~~ 823 (900)
.+.+++.+.
T Consensus 318 ~~~~~l~~~ 326 (363)
T 3hws_A 318 ALLDTMYDL 326 (363)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHhc
Confidence 999988764
No 10
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.92 E-value=2.5e-25 Score=247.24 Aligned_cols=259 Identities=16% Similarity=0.254 Sum_probs=206.9
Q ss_pred ccccCCCChhhHHHHHHHHhcCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHH
Q 046258 526 LMLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELA 605 (900)
Q Consensus 526 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA 605 (900)
+|+.+|++.+.+...+.+.+..............++|.+.++..+...+.+.. ....+++++|++||||+.+|
T Consensus 97 ~yl~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a-------~~~~~vli~GesGtGKe~lA 169 (368)
T 3dzd_A 97 EFLEKPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIA-------KSKAPVLITGESGTGKEIVA 169 (368)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHH-------TSCSCEEEECCTTSSHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhh-------ccchhheEEeCCCchHHHHH
Confidence 78999999999988887654321100000011347888888888888887763 12235999999999999999
Q ss_pred HHHHHHhcCCCCceeEecccccccccccccccCCCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHh
Q 046258 606 KALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVL 684 (900)
Q Consensus 606 ~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~l 684 (900)
+++|....+.. +|+.+||+.+.+....+.|+|+..|.. |... .-.+.+..+.+++||||||+.+++.+|..|+++|
T Consensus 170 r~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l 246 (368)
T 3dzd_A 170 RLIHRYSGRKG-AFVDLNCASIPQELAESELFGHEKGAFTGALT--RKKGKLELADQGTLFLDEVGELDQRVQAKLLRVL 246 (368)
T ss_dssp HHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHEECSCSSSSCCC--CEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHH
T ss_pred HHHHHhccccC-CcEEEEcccCChHHHHHHhcCccccccCCccc--ccCChHhhcCCCeEEecChhhCCHHHHHHHHHHH
Confidence 99999987754 499999999998888899999876643 3221 1234556677899999999999999999999999
Q ss_pred hCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccce-eecCCCCH--HH
Q 046258 685 DDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEI-VVFDPLSH--EQ 761 (900)
Q Consensus 685 d~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~-i~f~pl~~--e~ 761 (900)
++|.++...+......++++|++||.+...... .+.|+++|++|+..+ |.++||++ +|
T Consensus 247 ~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~-------------------~g~fr~dL~~rl~~~~i~lPpLreR~~D 307 (368)
T 3dzd_A 247 ETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK-------------------KGNFREDLYYRLSVFQIYLPPLRERGKD 307 (368)
T ss_dssp HHSEECCBTCCCBEECCCEEEEEESSCHHHHHH-------------------TTSSCHHHHHHHTSEEEECCCGGGSTTH
T ss_pred HhCCcccCCCCcceeeeeEEEEecCCCHHHHHH-------------------cCCccHHHHHHhCCeEEeCCChhhchhh
Confidence 999998876665556789999999998776655 678999999999764 77899988 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 762 LRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 762 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+..++.+++.++..+++.. .+.+++++++.|..|.||+| +|+|+++|++++.
T Consensus 308 i~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpGN--vreL~n~i~~~~~ 359 (368)
T 3dzd_A 308 VILLAEYFLKKFAKEYKKN--CFELSEETKEYLMKQEWKGN--VRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHHTCCCTTH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHhCCCCcH--HHHHHHHHHHHHH
Confidence 9999999999888765443 46899999999999999999 9999999998765
No 11
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.92 E-value=4e-25 Score=239.53 Aligned_cols=227 Identities=19% Similarity=0.249 Sum_probs=182.3
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.++|++.+++.+.+.+.... ....++||+||||||||++|++||..+.+...+|+.+||+.+......+.++|
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CcEECCHHHHHHHHHHHHHh-------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 36788889999999988772 22346999999999999999999999887788999999999987777788999
Q ss_pred CCCCCc-ccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 639 APPGYV-GHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 639 ~~~g~~-g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
+..|.. |... .....+..+.+++||||||+.+++++|..|+++|+++.+....+......+++||+|||.+...+..
T Consensus 76 ~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~ 153 (304)
T 1ojl_A 76 HEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS 153 (304)
T ss_dssp CCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH
T ss_pred ccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH
Confidence 866533 2221 1223344456789999999999999999999999999887655444445678999999998665543
Q ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCC--HHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Q 046258 718 GMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLS--HEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIV 794 (900)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~--~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 794 (900)
...|+++|++||+. .+.++||+ .+|+..++.+++.++...++.. ...+++++++.|
T Consensus 154 -------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~~a~~~L 212 (304)
T 1ojl_A 154 -------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTPQAMDLL 212 (304)
T ss_dssp -------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHH
T ss_pred -------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCHHHHHHH
Confidence 56799999999964 47789999 5999999999998877654433 367999999999
Q ss_pred HHcCCCCCCCchHHHHHHHHHHH
Q 046258 795 LAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 795 ~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
..+.|++| +|+|++++++++.
T Consensus 213 ~~~~wpGn--vReL~~~l~~~~~ 233 (304)
T 1ojl_A 213 IHYDWPGN--IRELENAIERAVV 233 (304)
T ss_dssp HHCCCSSH--HHHHHHHHHHHHH
T ss_pred HcCCCCCC--HHHHHHHHHHHHH
Confidence 99999998 9999999988765
No 12
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.92 E-value=9.8e-25 Score=244.52 Aligned_cols=262 Identities=18% Similarity=0.241 Sum_probs=209.7
Q ss_pred cccccCCCChhhHHHHHHHHhcCCcc-----ccChhH---HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEecc
Q 046258 525 NLMLTETVGPDQIAEVVSRWTGIPVT-----RLGQNE---KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGP 596 (900)
Q Consensus 525 ~~~~~~~~~~~~i~~~i~~~~~~~~~-----~~~~~~---~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp 596 (900)
.+|+.+|++.+.+...+.+....... .+.... ...++|.+.+++.+.+.+... ..+..+++++|+
T Consensus 96 ~dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~-------a~~~~~vli~Ge 168 (387)
T 1ny5_A 96 YDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKI-------SCAECPVLITGE 168 (387)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHH-------TTCCSCEEEECS
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHh-------cCCCCCeEEecC
Confidence 37888999999888888765532110 000000 013677778899999888876 222335899999
Q ss_pred CCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCC-cccccccchhHHHHhCCCeEEEEccccccCHH
Q 046258 597 TGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGY-VGHEEGGQLTEAVRRRPYSVVLFDEVEKAHIS 675 (900)
Q Consensus 597 ~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~-~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~ 675 (900)
+|||||.+|++|+....+...+|+.+||+.+.+....+.|+|+..|. .|... .-.+.+..+.+++||||||+.++++
T Consensus 169 ~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~ 246 (387)
T 1ny5_A 169 SGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELSLE 246 (387)
T ss_dssp TTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCCHH
T ss_pred CCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCCHH
Confidence 99999999999999998888999999999999888889999987653 33221 2334566778899999999999999
Q ss_pred HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeec
Q 046258 676 VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVF 754 (900)
Q Consensus 676 ~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f 754 (900)
+|..|+++|++|.++...+......++++|+|||.+...+.. .+.|+++|++|+.. .+.+
T Consensus 247 ~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~-------------------~g~fr~dl~~rl~~~~i~l 307 (387)
T 1ny5_A 247 AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK-------------------EGKFREDLYYRLGVIEIEI 307 (387)
T ss_dssp HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH-------------------TTSSCHHHHHHHTTEEEEC
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH-------------------cCCccHHHHHhhcCCeecC
Confidence 999999999999998777766666789999999998876655 67899999999964 5777
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 755 DPLSH--EQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 755 ~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
+||++ +|+..++.+++.++..+++.. ...+++++++.|..|.||+| +|+|+++|++++..
T Consensus 308 PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~wpGN--vreL~~~i~~~~~~ 369 (387)
T 1ny5_A 308 PPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLSYPWYGN--VRELKNVIERAVLF 369 (387)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHHSCCTTH--HHHHHHHHHHHHHH
T ss_pred CcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCcH--HHHHHHHHHHHHHh
Confidence 88877 999999999999887765443 35799999999999999999 99999999987763
No 13
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.91 E-value=3.9e-24 Score=228.03 Aligned_cols=228 Identities=21% Similarity=0.304 Sum_probs=173.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
.+.++|++.+++.+.+.+..... ...++||+||||||||++|+++++.+.+...+|+.++|+.+......+.+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~-------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAP-------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTT-------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhC-------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 34578999999999888877621 12369999999999999999999999877789999999998766556778
Q ss_pred cCCCCC-CcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 637 IGAPPG-YVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 637 ~G~~~g-~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
+|...| |.|... ...+.+..+.+++||||||+.+++++++.|+++|+++.+.+..+......++++|+|||.++..+
T Consensus 78 ~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp HCCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cCCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 887544 233221 12234445567899999999999999999999999998876555444456789999999986555
Q ss_pred hcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCH--HHHHHHHHHHHHHHHHHHHhcCCc--cccCHHH
Q 046258 716 LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSH--EQLRKVARLQMKDVAIRLAERGVA--LAVTDAA 790 (900)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~--e~~~~I~~~~l~~~~~~~~~~~~~--~~~~~~a 790 (900)
.. ...|+++|++||+ ..+.++||++ +++..++.+++.++.... +.. ..+++++
T Consensus 156 ~~-------------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~---~~~~~~~~~~~a 213 (265)
T 2bjv_A 156 VN-------------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI---KLPLFPGFTERA 213 (265)
T ss_dssp HH-------------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT---TCSSCCCBCHHH
T ss_pred HH-------------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh---CCCcccCcCHHH
Confidence 43 4678999999996 4688899887 899999999998766543 333 3799999
Q ss_pred HHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 791 LDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 791 ~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+++|..++|++| +|+|++++++++.
T Consensus 214 ~~~L~~~~~~gn--~reL~~~l~~~~~ 238 (265)
T 2bjv_A 214 RETLLNYRWPGN--IRELKNVVERSVY 238 (265)
T ss_dssp HHHHHHSCCTTH--HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHH
Confidence 999999999988 9999999988664
No 14
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.91 E-value=2.8e-24 Score=241.19 Aligned_cols=265 Identities=23% Similarity=0.328 Sum_probs=177.2
Q ss_pred HHHhcHHHHHHHHHHHH----HHHhcCC-----------------CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC
Q 046258 558 ERLIGLAEAVNAVAESV----LRSRAGL-----------------GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE 616 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i----~~~~~g~-----------------~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~ 616 (900)
+.++||+.+++.+..++ .+.+.|+ ....++..++||+||||||||++|+++|+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 34789999998888877 3433322 00122344799999999999999999999994
Q ss_pred CceeEecccccccccccccccCCCCCCcccccccchhHHHH-------hCCCeEEEEccccccCHH--------------
Q 046258 617 NLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-------RRPYSVVLFDEVEKAHIS-------------- 675 (900)
Q Consensus 617 ~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~vlllDEidk~~~~-------------- 675 (900)
.+|+.++|+.+.. .+|+|....+.+...+. .++++|||||||+++++.
T Consensus 98 ~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 166 (376)
T 1um8_A 98 IPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG 166 (376)
T ss_dssp CCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHH
T ss_pred CCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHH
Confidence 4899999987643 34566555555555443 336799999999999988
Q ss_pred HHHHHHHHhhCCee--ecCCCce--------eecCCeEEEEccCC-CcHHHhcccC-----C--ccch-----HH-HHHH
Q 046258 676 VFNTLLQVLDDGRL--TDGQGRT--------VDFRNTVIIMTSNL-GAEHLLSGMM-----G--KVTM-----QV-ARDQ 731 (900)
Q Consensus 676 ~~~~Ll~~ld~g~~--~d~~g~~--------~~~~~~~iI~tsn~-~~~~~~~~~~-----~--~~~~-----~~-~~~~ 731 (900)
+++.|+++|+.+.+ .+..++. +..+|++||+|+|. +.+......+ + .... .. ....
T Consensus 167 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~ 246 (376)
T 1um8_A 167 VQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLV 246 (376)
T ss_dssp HHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGC
T ss_pred HHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhc
Confidence 99999999997753 3444443 44466677777764 2222221111 0 0000 00 0000
Q ss_pred HHHH-HHhcccHHHHhcccceeecCCCCHHHHHHHHH----HHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCch
Q 046258 732 VLQE-VRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR----LQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGAR 806 (900)
Q Consensus 732 ~~~~-~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~----~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R 806 (900)
.... ....|.|+|++||+.++.|+||+.+++..|+. .++.++.+++...+..+.++++++++|+.++|+.+.|+|
T Consensus 247 ~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R 326 (376)
T 1um8_A 247 QTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGAR 326 (376)
T ss_dssp CHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGG
T ss_pred CHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcH
Confidence 0111 14568999999999999999999999999998 467777777776777899999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 807 PIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 807 ~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
+|++++++.+..++.+.... .+..+.|+.+
T Consensus 327 ~L~~~le~~~~~~~~~~~~~----~~~~~~i~~~ 356 (376)
T 1um8_A 327 GLRAIIEDFCLDIMFDLPKL----KGSEVRITKD 356 (376)
T ss_dssp GHHHHHHHHHHHHHHTGGGG----TTSEEEECHH
T ss_pred HHHHHHHHHHHHHHhhccCC----CCCEEEEeHH
Confidence 99999999999988865532 2445666554
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.88 E-value=2.1e-22 Score=219.75 Aligned_cols=243 Identities=24% Similarity=0.359 Sum_probs=180.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHh--cCCCC---CCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSR--AGLGR---PQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~--~g~~~---~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
...++|++.+++.+..++.... .++.. ...+..++||+||||||||++|+++|+.+. .+++.++|+.+..
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~~~~-- 88 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKFTE-- 88 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGGSS--
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchhccc--
Confidence 3458899999999998887631 11110 011224799999999999999999999994 4899999988653
Q ss_pred ccccccCCCCCCcccccccchhHHHHh--------CCCeEEEEccccccCHHH------------HHHHHHHhhCCeeec
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVRR--------RPYSVVLFDEVEKAHISV------------FNTLLQVLDDGRLTD 691 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~~--------~~~~vlllDEidk~~~~~------------~~~Ll~~ld~g~~~d 691 (900)
.+|+|......+...... .+++||||||||++++.. ++.|+++|+++.+..
T Consensus 89 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 89 ---------VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp ---------CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred ---------CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec
Confidence 246665544444443332 236899999999998664 899999999887766
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHH----
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR---- 767 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~---- 767 (900)
..+ ..+..+++||+++|..... ...++|+|++||+.++.|+||+.+++..|++
T Consensus 160 ~~~-~~~~~~~~~i~~~~~~~~~----------------------~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~ 216 (310)
T 1ofh_A 160 KHG-MVKTDHILFIASGAFQVAR----------------------PSDLIPELQGRLPIRVELTALSAADFERILTEPHA 216 (310)
T ss_dssp TTE-EEECTTCEEEEEECCSSSC----------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTT
T ss_pred ccc-cccCCcEEEEEcCCcccCC----------------------cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHH
Confidence 555 4566789999997643110 3468999999999889999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCC-----CCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEec
Q 046258 768 LQMKDVAIRLAERGVALAVTDAALDIVLAESYDP-----IYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAS 840 (900)
Q Consensus 768 ~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~-----~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~~ 840 (900)
.++.++...+...+..+.++++++++|++++|+. ..++|.+.+++++.+.....+.. ...|..+.|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~----~~~~~~~~i~~~ 290 (310)
T 1ofh_A 217 SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS----DMNGQTVNIDAA 290 (310)
T ss_dssp CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGG----GCTTCEEEECHH
T ss_pred HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCc----cccCCEEEEeeH
Confidence 5666666666667777899999999999998862 45699999999988776553322 234556666543
No 16
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.88 E-value=2.9e-22 Score=223.80 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=120.4
Q ss_pred CCeEEEEccccccCHH------------HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHH
Q 046258 660 PYSVVLFDEVEKAHIS------------VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV 727 (900)
Q Consensus 660 ~~~vlllDEidk~~~~------------~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~ 727 (900)
+++++++|||||+... +|+.||++||......++ ..++.++++||+|+......
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~------------- 315 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVAR------------- 315 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCC-------------
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCC-------------
Confidence 6789999999998642 889999999977766655 57899999999998432100
Q ss_pred HHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHH----HHHHHHHHHHHhcCCccccCHHHHHHHHHcC-----
Q 046258 728 ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR----LQMKDVAIRLAERGVALAVTDAALDIVLAES----- 798 (900)
Q Consensus 728 ~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~----~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~----- 798 (900)
...+.|+|++||+.+|.|++|+.+++.+|+. ..+.++.+.++..|+.+.|+++|+++|++.+
T Consensus 316 ---------~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~ 386 (444)
T 1g41_A 316 ---------PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 386 (444)
T ss_dssp ---------GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred ---------hhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhcc
Confidence 1225699999998889999999999999994 3667777778888999999999999999864
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHcccCCCCCEEEEEe
Q 046258 799 YDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDA 839 (900)
Q Consensus 799 ~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~~~~~~v~~ 839 (900)
|+.+.|||.|++.|++.+.....+. ... .+..+.|+.
T Consensus 387 ~t~~~GaR~L~~~ie~~~~~~~~~~-~~~---~~~~~~i~~ 423 (444)
T 1g41_A 387 KTENIGARRLHTVMERLMDKISFSA-SDM---NGQTVNIDA 423 (444)
T ss_dssp HSCCCGGGHHHHHHHHHHHHHHHHG-GGC---TTCEEEECH
T ss_pred CCccCCchHHHHHHHHHHHHHHhhc-ccc---CCCeEEEeH
Confidence 5689999999999988777766543 322 234565544
No 17
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.88 E-value=4.3e-22 Score=192.11 Aligned_cols=144 Identities=28% Similarity=0.469 Sum_probs=124.4
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||.+|+|||||+|||++++|.+.++|+++|+|+ +.++..++..+.+.|...+.+
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~--~~l~~~l~~~l~~~p~~~~~~ 78 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINA--GQLRTDINQALNRLPQVEGTG 78 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCH--HHHHHHHHHHHTTSCCC----
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCH--HHHHHHHHHHHHhCCCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999 999999999999998764323
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhc-cchhHHHHHcCCCHHHHHHHHHHhhc
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQIGDLFKEAGVAVARVKSEVEKLRG 146 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~-~~~~~~L~~~gi~~~~l~~~~~~~~~ 146 (900)
..+++|+.+.++|+.|+.+|..+++.+|+++|+++|+++. ..+..+|..+|++...++..+..+++
T Consensus 79 ~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~l~~~rg 145 (148)
T 1khy_A 79 GDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRG 145 (148)
T ss_dssp ---CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHHHC---
T ss_pred CCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 5689999999999999999999999999999999999963 35678899999999999988766553
No 18
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.88 E-value=7.5e-22 Score=189.46 Aligned_cols=141 Identities=19% Similarity=0.322 Sum_probs=131.2
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
+||++||++++++|..|+++|+++||.+|+|||||+|||++++|.+.++|+++|+|+ +.++..+...+++.|.. .+
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~--~~l~~~l~~~l~~~~~~--~~ 77 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISL--DAVRQEVEEIIGQGSQP--TT 77 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCH--HHHHHHHHHHHCCCSCC--CC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCH--HHHHHHHHHHhccCCCC--Cc
Confidence 478999999999999999999999999999999999999999999999999999999 99999999999988864 34
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHHHHhh
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVEKLR 145 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~~~~~ 145 (900)
..+++|+.++++|+.|+.+|+.+|+.+|+++||++|+++++ .+..+|+++|++...+++.+....
T Consensus 78 ~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~ 144 (146)
T 3fh2_A 78 GHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLL 144 (146)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999764 578899999999999999886654
No 19
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.87 E-value=1.4e-21 Score=187.20 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=128.4
Q ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCCC
Q 046258 2 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAPD 81 (900)
Q Consensus 2 ~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~~ 81 (900)
+|++||++++++|..|+++|+++||.+|+|||||+|||++++|.+.++|+++|+|+ +.+++.+++.+++.|. . +.
T Consensus 4 ~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~--~~l~~~l~~~l~~~~~-~--~~ 78 (145)
T 3fes_A 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTE--AYLEGKIVDMEGKGEE-I--SE 78 (145)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCH--HHHHHHHHHHHCCCSC-C--CS
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCH--HHHHHHHHHHHhcCCC-C--CC
Confidence 57899999999999999999999999999999999999999999999999999999 9999999999999886 2 35
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHHHHh
Q 046258 82 EIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVEKL 144 (900)
Q Consensus 82 ~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~~~~ 144 (900)
.+++|+.++++|+.|+.+|+.+|+.+|+++||++|+++++ .+..+|+++|++...+++.+...
T Consensus 79 ~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 143 (145)
T 3fes_A 79 DIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDM 143 (145)
T ss_dssp CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999865 36789999999999999887553
No 20
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.86 E-value=1.6e-21 Score=188.45 Aligned_cols=142 Identities=20% Similarity=0.389 Sum_probs=126.3
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||.+|+|||||+|||++++|.+.++|+++|+|+ +.++..++..+++.|...
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~--~~l~~~l~~~l~~~~~~~--- 75 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGS--EKIQKEVESLIGRAQEMS--- 75 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCH--HHHHHHHHHHHCCC-------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCH--HHHHHHHHHHhccCCccc---
Confidence 899999999999999999999999999999999999999999999999999999999 999999999999988652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhccc--hhHHHHHcCCCHHHHHHHHHHhhcc
Q 046258 81 DEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQ--IGDLFKEAGVAVARVKSEVEKLRGK 147 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~~--~~~~L~~~gi~~~~l~~~~~~~~~~ 147 (900)
+.++||+.+.++|+.|+.+|..+|+.+|+++|+++|+++++. ...+|+.+|++...++..+...++.
T Consensus 76 ~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 76 QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp -CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 468999999999999999999999999999999999997653 4588999999999999988877653
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=2.5e-21 Score=195.05 Aligned_cols=191 Identities=72% Similarity=1.173 Sum_probs=161.5
Q ss_pred hhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 046258 161 FQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRL 238 (900)
Q Consensus 161 ~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~ 238 (900)
++.|.+++.+++... ..+++++|++.+++++.+.+.+....+++|+||||||||++|+.+++.+.....|....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 457888899998876 789999999999999999998877889999999999999999999999987766666668889
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHH
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLE 318 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~ 318 (900)
+.+++..+..+..+.|.+...++.++..+....+++||||||+|.+.+.+...+..++.+.|+.+++.+.+.+|++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 99999999877777888888888888877777778899999999998765444455667788888999999999999988
Q ss_pred HHHHHhhccHHHHcccceeeecCCChHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSVPDTVSIL 351 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~il 351 (900)
.+......++++.+||..+.+..|+.+++.+|+
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 877776789999999998999999998887764
No 22
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6e-21 Score=209.42 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=154.2
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.+.+.+. ...+..+||+||||||||++|+++|..+ +++|+.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEE
Confidence 456789999998888877553 2456789999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---ChhhH---HHhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSMDA---ANLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~~~---~~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+||||||+|.+.+.+..+ ++... .+.|+..|+ ...+.||
T Consensus 215 ~s~l~s--k~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 215 GAELVQ--KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp GGGGSC--SSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred hHHhhc--cccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 999886 689999999999999988765 8999999999999876431 22222 334444443 4579999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||+.+. +||+|.| ||+. |+++.|+.++|.+||+.+...+.... +..+..++..+.+|- .+
T Consensus 292 aATNrpd~-----LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-----dvdl~~lA~~t~G~S-----GA 356 (405)
T 4b4t_J 292 MATNRLDI-----LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-----GINLRKVAEKMNGCS-----GA 356 (405)
T ss_dssp EEESCSSS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-----SCCHHHHHHHCCSCC-----HH
T ss_pred eccCChhh-----CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-----cCCHHHHHHHCCCCC-----HH
Confidence 99998874 8999999 9986 89999999999999987766532111 223566777776663 44
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+|+..
T Consensus 357 Di~~l~~eA~~~ 368 (405)
T 4b4t_J 357 DVKGVCTEAGMY 368 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777788877654
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.85 E-value=1e-20 Score=189.64 Aligned_cols=183 Identities=68% Similarity=1.160 Sum_probs=157.8
Q ss_pred hhhHhhhhhcHHHHc--CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 046258 161 FQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRL 238 (900)
Q Consensus 161 ~~~l~~~~~~l~~~a--~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~ 238 (900)
++.|.+|+.+|.+.. ..+++++|++.+++++.+.+.+....+++|+||||||||++|+.+++.+.....|....+..+
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp -CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 567889999999876 889999999999999999998877889999999999999999999999988777777778899
Q ss_pred EEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCC-CCChhhHHHhHhhhhhcCcEEEEEecCH
Q 046258 239 IALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGR-TEGSMDAANLFKPMLARGQLRCIGATTL 317 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~-~~~~~~~~~~L~~~l~~g~irvI~att~ 317 (900)
+.+++..+..+..+.|.+...+..++..+...+++.+|||||+|.+.+.+. ..+..++.+.|+.+++++.+.+|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCH
Confidence 999999988777777888888888888888776688999999999986554 3344667788889999999999999998
Q ss_pred HHHHHHhhccHHHHcccceeeecCCC
Q 046258 318 EEYRKYVEKDAAFERRFQQVYVAEPS 343 (900)
Q Consensus 318 ~~~~~~~~~d~al~~Rf~~i~i~~P~ 343 (900)
..+......++++.+||..+.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHhccHHHHHhcCcccCCCCC
Confidence 88766667899999999988887774
No 24
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.3e-20 Score=204.89 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=153.5
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.|.+.+. .+.+..+||+||||||||++|+++|..+ +++|+.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 567788999998888877553 1456789999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHh---Hhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANL---FKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~---L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+||||||+|.+.+.+.. .++....+. |+..+. .+.+.||
T Consensus 249 ~s~l~s--k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 249 GSELIQ--KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp SGGGCC--SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred HHHhhh--ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 999986 689999999999999988765 899999999999987643 223333333 333332 4679999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChh-HHHHHHHHhhhhccCCCCh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDR-ALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~e-al~~l~~~s~~~~~~~~~p 388 (900)
+|||+.+. +||+|.| ||+. |+++.|+.++|.+||+.+...+. ++++ .+..++..+.+|- .
T Consensus 326 aATNrpd~-----LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~------l~~dvdl~~LA~~T~GfS-----G 389 (437)
T 4b4t_I 326 MATNKIET-----LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN------LSEDVNLETLVTTKDDLS-----G 389 (437)
T ss_dssp EEESCSTT-----CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC------BCSCCCHHHHHHHCCSCC-----H
T ss_pred EeCCChhh-----cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC------CCCcCCHHHHHHhCCCCC-----H
Confidence 99998874 8999999 9986 88999999999999987776532 2222 3566777776663 4
Q ss_pred hhHHHHHHHHHHH
Q 046258 389 DKAIDLVDEACAN 401 (900)
Q Consensus 389 ~~a~~Lld~a~a~ 401 (900)
++...++.+|+..
T Consensus 390 ADI~~l~~eA~~~ 402 (437)
T 4b4t_I 390 ADIQAMCTEAGLL 402 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4777777777644
No 25
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.8e-20 Score=204.45 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=153.6
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.|.+.+. ...+..+||+||||||||++|+++|..+ +++|+.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 467889999998888877542 2467789999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCCh---hhHH---HhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS---MDAA---NLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~---~~~~---~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+||||||+|.+...+...+. .... +.|+..|. .+.+.||
T Consensus 276 ~s~L~s--k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 276 GSELVQ--KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp GGGGCC--CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred hHHhhc--ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 999986 689999999999999988766 899999999999987654221 2222 33333332 5679999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||+... +|++|.| ||+. |+++.|+.++|.+||+.+...+....++ -+..++..+.+|- .+
T Consensus 353 aATNrpd~-----LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~GfS-----GA 417 (467)
T 4b4t_H 353 FATNRPNT-----LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCPNST-----GA 417 (467)
T ss_dssp EECSCTTS-----BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCCSCC-----HH
T ss_pred eCCCCccc-----CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCCCCC-----HH
Confidence 99998874 8999999 9986 8899999999999998877653221111 2566777776663 44
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+|+..
T Consensus 418 DI~~l~~eAa~~ 429 (467)
T 4b4t_H 418 ELRSVCTEAGMF 429 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777778777644
No 26
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.5e-20 Score=206.74 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=154.1
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.+.+.+. .+.+.++||+||||||||++|+++|..+ +++|+.++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~ 247 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKLA 247 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 467889999999988887542 2456789999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHH---HhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAA---NLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~---~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+||||||+|.+.+.+.. ++..... +.|+..|. .+.+.||
T Consensus 248 ~s~l~~--~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 248 APQLVQ--MYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp GGGGCS--SCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred hhhhhh--cccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 999986 689999999999999888766 899999999999987654 2222332 33444443 4568999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||+.+. +||+|.| ||+. |+++.|+.++|.+||+.+...+.....+ -+..++..+.+| ..+
T Consensus 325 aaTNrp~~-----LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~-----sGA 389 (434)
T 4b4t_M 325 AATNRVDV-----LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEF-----NGA 389 (434)
T ss_dssp EECSSCCC-----CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSC-----CHH
T ss_pred EeCCCchh-----cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCC-----CHH
Confidence 99998864 8999988 9986 8899999999999999888764322222 256677777665 344
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+|+..
T Consensus 390 Di~~l~~eA~~~ 401 (434)
T 4b4t_M 390 QLKAVTVEAGMI 401 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776643
No 27
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.83 E-value=1.9e-20 Score=182.65 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcCCCCCCCC
Q 046258 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKLPSQTPAP 80 (900)
Q Consensus 1 m~~~~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~~~~~~~~ 80 (900)
|||++||++++++|..|+++|+++||++|+|||||+|||++++|.+.++|+++|+|+ +.+++.++ .+++.|.. .+
T Consensus 20 ~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~--~~l~~~l~-~l~~~p~~--~~ 94 (171)
T 3zri_A 20 TLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEV--DQVKQAIA-STYSREQV--LD 94 (171)
T ss_dssp HHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCH--HHHHHHHH-HHSCCCCC--CS
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCH--HHHHHHHH-HHhcCCCC--CC
Confidence 678999999999999999999999999999999999999999999999999999999 99999999 99998865 34
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCCcccHHHHHHHHhhccchhHHHH----H-cCCCHHHHHHHHHHh
Q 046258 81 DEIPASTTLIKVIRRAQAAQK-AHGDTHLAVDQLILGLLEDSQIGDLFK----E-AGVAVARVKSEVEKL 144 (900)
Q Consensus 81 ~~~~~s~~~~~~l~~A~~~a~-~~g~~~i~~e~lllgll~~~~~~~~L~----~-~gi~~~~l~~~~~~~ 144 (900)
..++||+.++++|+.|+.+|+ .+|+.+|+++||++|+++++ ....+. . ..++.+.+.+.+..+
T Consensus 95 ~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~-~~~~~~~~~~~l~~i~~~~L~~~~~~~ 163 (171)
T 3zri_A 95 TYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRA-DRYLSFKLISLFEGINRENLKKHFAMI 163 (171)
T ss_dssp SCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH-HHHSCHHHHHHTTTSCHHHHHHTHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh-hhhHHHHhhHHHHcCCHHHHHHHHHHH
Confidence 578999999999999999999 99999999999999999876 332221 1 146666666554443
No 28
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.3e-20 Score=204.40 Aligned_cols=198 Identities=23% Similarity=0.318 Sum_probs=153.2
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.+.+.+. ...+..+||+||||||||++|+++|..+ +++|+.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 457889999998888877553 2456789999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC---hhhH---HHhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG---SMDA---ANLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~---~~~~---~~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+||||||+|.+.+.+..++ +... .+.|+..|. .+.+.||
T Consensus 248 ~s~l~s--k~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 248 ASGIVD--KYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp GGGTCC--SSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred hhhhcc--ccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 999886 689999999999999888765 99999999999987664422 2222 334444443 4568999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|||+.+. +||+|.| ||+. |+++.|+..+|.+||+.+...+.... +..+..++..+.+| ..+
T Consensus 325 ~ATNrp~~-----LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-----d~dl~~lA~~t~G~-----sGA 389 (437)
T 4b4t_L 325 MATNRPDT-----LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-----EFDFEAAVKMSDGF-----NGA 389 (437)
T ss_dssp EEESSTTS-----SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-----CCCHHHHHHTCCSC-----CHH
T ss_pred EecCCchh-----hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-----ccCHHHHHHhCCCC-----CHH
Confidence 99998864 8999988 6986 88999999999999998877642221 22256677777665 344
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...++.+|+..
T Consensus 390 Di~~l~~eA~~~ 401 (437)
T 4b4t_L 390 DIRNCATEAGFF 401 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777644
No 29
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.82 E-value=2.7e-20 Score=220.87 Aligned_cols=298 Identities=15% Similarity=0.173 Sum_probs=189.2
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc-
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME- 629 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~- 629 (900)
++.+.....++|++.+++.+...+... .+++|+||||||||++|++||..+.......+.+++.....
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~ 102 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN 102 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT
T ss_pred cccccccceEECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc
Confidence 456667889999999998888887532 25999999999999999999999866443334443322210
Q ss_pred -------------------------------------------------------------ccccccccCCC-------C
Q 046258 630 -------------------------------------------------------------QHSVSRLIGAP-------P 641 (900)
Q Consensus 630 -------------------------------------------------------------~~~~~~l~G~~-------~ 641 (900)
......++|.- .
T Consensus 103 ~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 103 MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG 182 (604)
T ss_dssp SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence 01112233321 0
Q ss_pred CCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCC----------ceeecCCeEEEEccCCC
Q 046258 642 GYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG----------RTVDFRNTVIIMTSNLG 711 (900)
Q Consensus 642 g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g----------~~~~~~~~~iI~tsn~~ 711 (900)
++.+......-...+..+.+++||||||+.+++.+|+.|+++|+++.++...+ ......+++||+|||..
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred CccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH
Confidence 01000000112234556678899999999999999999999999998875322 11122478899999963
Q ss_pred cHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc---ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Q 046258 712 AEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD---EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTD 788 (900)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~---~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 788 (900)
. ...|+|+|++||+ ..+.|.+..+ +....+..++..+.+.+...+....+++
T Consensus 263 ~------------------------~~~l~~~l~~R~~v~~i~i~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ls~ 317 (604)
T 3k1j_A 263 T------------------------VDKMHPALRSRIRGYGYEVYMRTTMP-DTIENRRKLVQFVAQEVKRDGKIPHFTK 317 (604)
T ss_dssp H------------------------HHHSCHHHHHHHHHHSEEEECCSEEE-CCHHHHHHHHHHHHHHHHHHCSSCCBBH
T ss_pred H------------------------HhhcCHHHHHHhhccceEeecccccc-CCHHHHHHHHHHHHHHHhhccCcccCCH
Confidence 1 3468999999996 3556655322 2223344444444555554444678999
Q ss_pred HHHHHHHHcCC--CCCC-----CchHHHHHHHHHHHHH----------------H----------HHHHHcc-----cCC
Q 046258 789 AALDIVLAESY--DPIY-----GARPIRRWLEKKVVTE----------------L----------SRMLVRE-----EID 830 (900)
Q Consensus 789 ~a~~~l~~~~~--~~~~-----g~R~L~~~i~~~i~~~----------------l----------~~~i~~~-----~~~ 830 (900)
+++..|+++.| ++.. ..|++.++++.+..-+ + .+.++.. .+.
T Consensus 318 eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~i~~~~~e~~l~~~~~~~~i~ 397 (604)
T 3k1j_A 318 EAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKPLEKQLADWYIERKKEYQVIK 397 (604)
T ss_dssp HHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhhhHHHHHHHHhccccccchhh
Confidence 99999998764 4422 3788888886543211 0 1111111 000
Q ss_pred -----C-------------CCEEEEEe--cC--C--CCeEEEEEecCCcccccccc-------------ccccccccCCC
Q 046258 831 -----E-------------NSTVYIDA--SP--K--GDNLVYRVQKNGGFVDAATG-------------RKSDVLIQIPN 873 (900)
Q Consensus 831 -----~-------------~~~~~v~~--~~--~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~p~ 873 (900)
. |..+.|++ .+ + ++++.+++..+++|+++..- ...|+|+|+|.
T Consensus 398 ~~~~~~g~v~gla~~~~~~g~~~~ie~~~~~~~~~~~g~~~~~g~~~~~~~es~~~~~~~l~~~~~~~~~~~~i~i~~~~ 477 (604)
T 3k1j_A 398 TEGSEIGRVNGLAVIGEQSGIVLPIEAVVAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYKGEDISRYDIHVQFLQ 477 (604)
T ss_dssp CSSEETTEEEEEEEETTTEEEEEEEEEEEEECSSSSBCCEEEESCBCHHHHHHHHHHHHHHHHHHCGGGGGEEEEEEETT
T ss_pred ccCcccEEEEEEEEECCCccEEEEEEEEEEeCCCCCCCEEEEecChHHHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcC
Confidence 0 33344443 33 2 36799999999999887642 45699999999
Q ss_pred C--CCCCchhHHh
Q 046258 874 G--PRTDPSQAVK 884 (900)
Q Consensus 874 ~--~~~~~~~~~~ 884 (900)
| |||||||--+
T Consensus 478 ~~~~~~gpsa~l~ 490 (604)
T 3k1j_A 478 TYEGVEGDAASIS 490 (604)
T ss_dssp CTTCBCSSTTHHH
T ss_pred CcccCCCccchHH
Confidence 9 9999998543
No 30
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.2e-19 Score=199.00 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=152.3
Q ss_pred CCCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-+++++.|.+..++.+.+.+. ...+..+||+||||||||++|+++|..+ +++|+.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 467789999998888877553 1456679999999999999999999999 88899999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhh---HHHhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMD---AANLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~---~~~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... |+|+||||+|.+.+.+.. +++.. ..+.|+..|. ...+.||
T Consensus 239 ~~~l~~--~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 239 GSEFVH--KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp GGGTCC--SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred cchhhc--cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 999886 679999999999999988765 899999999999987633 22222 2344444443 4579999
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeec-CCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCCh
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVA-EPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLP 388 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~-~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p 388 (900)
+|||+.+. +||+|.| ||+. |+++ .|+..+|..||+.+....... ++..+..++..+.+|- .
T Consensus 316 ~aTN~~~~-----LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-----~~~dl~~lA~~t~G~s-----g 380 (428)
T 4b4t_K 316 MATNRADT-----LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-----PEADLDSLIIRNDSLS-----G 380 (428)
T ss_dssp EEESCSSS-----CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-----TTCCHHHHHHHTTTCC-----H
T ss_pred EecCChhh-----cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHHCCCCC-----H
Confidence 99998764 8999999 9986 8885 789999999998887653211 1223567777776663 3
Q ss_pred hhHHHHHHHHHHH
Q 046258 389 DKAIDLVDEACAN 401 (900)
Q Consensus 389 ~~a~~Lld~a~a~ 401 (900)
++...++.+|+..
T Consensus 381 adi~~l~~eA~~~ 393 (428)
T 4b4t_K 381 AVIAAIMQEAGLR 393 (428)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4777777777643
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=1.6e-19 Score=196.76 Aligned_cols=213 Identities=24% Similarity=0.335 Sum_probs=162.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH-------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC----CCceeEecc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS-------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD----ENLLVRIDM 624 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~-------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~----~~~~i~i~~ 624 (900)
....++|++.+++.+.+.+... ..|+..+ ++..++||+||||||||++|+++|+.+... ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3446889998888887766543 2344433 344589999999999999999999998653 337889988
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhCCeeecCCCc
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA---------HISVFNTLLQVLDDGRLTDGQGR 695 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~---------~~~~~~~Ll~~ld~g~~~d~~g~ 695 (900)
+.+.. . |+|... ..+...+....++||||||+|.+ ++.+++.|++.|+++.
T Consensus 108 ~~l~~-----~-------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------- 167 (309)
T 3syl_A 108 DDLVG-----Q-------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------- 167 (309)
T ss_dssp GGTCC-----S-------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT-------
T ss_pred HHhhh-----h-------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC-------
Confidence 76532 1 333322 23445555567799999999977 8899999999999732
Q ss_pred eeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHH
Q 046258 696 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAI 775 (900)
Q Consensus 696 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~ 775 (900)
.+++||+|+|...... ...++|+|.+||+.++.|+||+.+++..|+..++.+
T Consensus 168 ----~~~~~i~~~~~~~~~~---------------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~--- 219 (309)
T 3syl_A 168 ----DDLVVILAGYADRMEN---------------------FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD--- 219 (309)
T ss_dssp ----TTCEEEEEECHHHHHH---------------------HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH---
T ss_pred ----CCEEEEEeCChHHHHH---------------------HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH---
Confidence 5788999998632110 123469999999999999999999999999999873
Q ss_pred HHHhcCCccccCHHHHHHHHHc-------CCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 776 RLAERGVALAVTDAALDIVLAE-------SYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 776 ~~~~~~~~~~~~~~a~~~l~~~-------~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
. .+.+++++++.+..+ .|++| +|.+++++++++.....+.+.
T Consensus 220 ----~--~~~~~~~~~~~l~~~~~~~~~~~~~gn--~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 220 ----Q--NYQMTPEAETALRAYIGLRRNQPHFAN--ARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp ----T--TCEECHHHHHHHHHHHHHHTTSSSCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c--CCCCCHHHHHHHHHHHHHhccCCCCCc--HHHHHHHHHHHHHHHHHHHHh
Confidence 2 368999999999987 78777 999999999999887777665
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.79 E-value=1.4e-18 Score=190.22 Aligned_cols=196 Identities=20% Similarity=0.339 Sum_probs=151.9
Q ss_pred CCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
++++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|+.+ +.+|+.++++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~~~ 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEEHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEchH
Confidence 46779999999999988772 1345679999999999999999999998 7789999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhh-----hcCcEEEEEecC
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPML-----ARGQLRCIGATT 316 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-----~~g~irvI~att 316 (900)
.+.. .+.|+.+..++.++..+.... ++||||||+|.|.+.... .......+.|+..+ ..+.+++|++||
T Consensus 86 ~l~~--~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVS--KWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHT--TTGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhh--cccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 9876 568999999999999888765 788999999999875432 22334445555444 346799999998
Q ss_pred HHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 317 LEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
... ..++++.+||.. +.++.|+.+++.+|++.+... ....++++.+..++..+.+|. +.+...++
T Consensus 163 ~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~l~~la~~t~g~s-----g~di~~l~ 228 (322)
T 3eie_A 163 IPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPCVLTKEDYRTLGAMTEGYS-----GSDIAVVV 228 (322)
T ss_dssp CGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT----CCCCCCHHHHHHHHHTTTTCC-----HHHHHHHH
T ss_pred Chh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHcCCCC-----HHHHHHHH
Confidence 765 379999999975 788999999999999877654 455578888888888886653 33555566
Q ss_pred HHHH
Q 046258 396 DEAC 399 (900)
Q Consensus 396 d~a~ 399 (900)
..++
T Consensus 229 ~~a~ 232 (322)
T 3eie_A 229 KDAL 232 (322)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=2e-18 Score=190.69 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=157.2
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
+.+.....++|++.+++.+...+...... ..+..++||+||||||||++|+++|+.+.. +|+.++|+.+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~~~---~~~~~~~~~~~~~- 94 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEMSA---NIKTTAAPMIEKS- 94 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHTTC---CEEEEEGGGCCSH-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHhCC---CeEEecchhccch-
Confidence 34444566899999999999888876431 233347999999999999999999999844 8999999764321
Q ss_pred ccccccCCCCCCcccccccchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeeecC-------CCceeecCCeE
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDG-------QGRTVDFRNTV 703 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~-------~g~~~~~~~~~ 703 (900)
+.+...+.. ..+++||||||+.+++.+++.|+++|+++.+.-. ....++..+++
T Consensus 95 ------------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 95 ------------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ------------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ------------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 233344443 5679999999999999999999999998875421 22334455789
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
+|++||. ...++++|++||+.++.|++++.+++..++...+.. . .
T Consensus 157 ~i~atn~--------------------------~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~--~ 201 (338)
T 3pfi_A 157 LIGATTR--------------------------AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------L--N 201 (338)
T ss_dssp EEEEESC--------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------T--T
T ss_pred EEEeCCC--------------------------ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------c--C
Confidence 9999997 355899999999999999999999999998877762 2 3
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+.+++++++.|+. .|+++ +|.+.+++++.+.
T Consensus 202 ~~~~~~~~~~l~~-~~~G~--~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 202 KTCEEKAALEIAK-RSRST--PRIALRLLKRVRD 232 (338)
T ss_dssp CEECHHHHHHHHH-TTTTC--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHCcC--HHHHHHHHHHHHH
Confidence 5789999999998 78888 8999999877543
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.4e-18 Score=185.80 Aligned_cols=197 Identities=20% Similarity=0.317 Sum_probs=151.6
Q ss_pred CCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
++++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|..+ .+..|+.++++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~~ 80 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSS 80 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEECC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEhH
Confidence 46779999999988887663 2334679999999999999999999987 25569999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC---hhhHHHhHhhhhh-----cCcEEEEEecC
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG---SMDAANLFKPMLA-----RGQLRCIGATT 316 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~-----~g~irvI~att 316 (900)
.+.. .+.|+.+..++.++..+.... ++||||||+|.+.+..+... .....+.|+..+. .+.+.+|++||
T Consensus 81 ~l~~--~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn 157 (322)
T 1xwi_A 81 DLVS--KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 157 (322)
T ss_dssp SSCC--SSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEES
T ss_pred HHHh--hhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecC
Confidence 8875 567888999999998887655 78899999999987665422 1233444444442 46799999998
Q ss_pred HHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 317 LEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+.. ..++++.+||.. +.++.|+.+++.+|++.+... .+..+++..+..++..+.+|. +.+...++
T Consensus 158 ~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s-----gadl~~l~ 223 (322)
T 1xwi_A 158 IPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYS-----GADISIIV 223 (322)
T ss_dssp CTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCC-----HHHHHHHH
T ss_pred Ccc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC-----HHHHHHHH
Confidence 775 379999999975 888999999999999877654 344567888888888876663 33666667
Q ss_pred HHHH
Q 046258 396 DEAC 399 (900)
Q Consensus 396 d~a~ 399 (900)
.+++
T Consensus 224 ~~A~ 227 (322)
T 1xwi_A 224 RDAL 227 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 35
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-18 Score=190.97 Aligned_cols=199 Identities=23% Similarity=0.336 Sum_probs=147.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++.|-|++.+.+.+.+.+... ..|+. |...+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~----~prGvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~l 218 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA----QPKGVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAEL 218 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCCCEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGGG
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHHh
Confidence 4677889999998888887652 22433 3336999999999999999999999955 9999999876
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeec
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTD 691 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d 691 (900)
.. .|+|..+. +.++...+....|||||||||.+.+ .+.+.||..||.-.
T Consensus 219 ~s------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 283 (405)
T 4b4t_J 219 VQ------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE--- 283 (405)
T ss_dssp SC------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT---
T ss_pred hc------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC---
Confidence 54 26665543 3355556666779999999998732 24677788887411
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...++++|+|||.+ ..++|+|+. |||..|.|++++.++..+|++.+
T Consensus 284 ------~~~~V~vIaATNrp--------------------------d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 284 ------TSKNIKIIMATNRL--------------------------DILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp ------CCCCEEEEEEESCS--------------------------SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred ------CCCCeEEEeccCCh--------------------------hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH
Confidence 23578999999984 568999996 99999999999999999999887
Q ss_pred HHHHHHHHHhcCCccccCHH-HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 770 MKDVAIRLAERGVALAVTDA-ALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 770 l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
+.. +.++++ -++.|+.. +..|.+.+|+.++..+...++.
T Consensus 332 ~~~-----------~~l~~dvdl~~lA~~--t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 332 SRK-----------MNLTRGINLRKVAEK--MNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp HTT-----------SBCCSSCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHHH
T ss_pred hcC-----------CCCCccCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Confidence 761 222222 25666654 3456788999999887766543
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.77 E-value=4.4e-18 Score=188.44 Aligned_cols=199 Identities=20% Similarity=0.327 Sum_probs=149.9
Q ss_pred CCCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
..+++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v~~ 117 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSS 117 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEEEH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEeeH
Confidence 457789999999999988763 1345679999999999999999999998 777999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh-----cCcEEEEEec
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA-----RGQLRCIGAT 315 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-----~g~irvI~at 315 (900)
+.+.. .+.|+.+..++.++..+.... ++||||||+|.|.+.+.. .....+.+.|+..+. ...+.+|++|
T Consensus 118 ~~l~~--~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 118 SDLVS--KWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp HHHHS--CC---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred HHHhh--hhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 98876 467888888999998877654 788999999999875432 112334455555553 4579999999
Q ss_pred CHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
|+.. .+++++.+||.. +.++.|+.+++.+|++.+... .+..+++..+..++..+.+|. +.+...+
T Consensus 195 n~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~s-----g~dl~~l 260 (355)
T 2qp9_X 195 NIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGYS-----GSDIAVV 260 (355)
T ss_dssp SCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTCC-----HHHHHHH
T ss_pred CCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCCC-----HHHHHHH
Confidence 8765 379999999975 788999999999999877654 344567888899998887663 4467777
Q ss_pred HHHHHHH
Q 046258 395 VDEACAN 401 (900)
Q Consensus 395 ld~a~a~ 401 (900)
+..++..
T Consensus 261 ~~~A~~~ 267 (355)
T 2qp9_X 261 VKDALMQ 267 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 37
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.76 E-value=3e-18 Score=163.97 Aligned_cols=132 Identities=17% Similarity=0.274 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhhcC-CCCC-CC-CCC
Q 046258 6 FTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKKL-PSQT-PA-PDE 82 (900)
Q Consensus 6 ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~~~-~~~~-~~-~~~ 82 (900)
||++++++|..|+++|+++||.+|+|||||+|||++++ +.++|+++|+|+ +.++..++..+.+. |... +. .+.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~--~~l~~~l~~~l~~~~p~~~~~~~~~~ 77 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDL--VALRQELEAFIEQTTPVLPASEEERD 77 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCH--HHHHHHHHHHHHHHSCBCCSSCSCCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCH--HHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 89999999999999999999999999999999998763 899999999999 99999999999886 7653 11 246
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHH
Q 046258 83 IPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEV 141 (900)
Q Consensus 83 ~~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~ 141 (900)
++||+.++++|+.|+.+|+.+|+.+|+++|+++|+++++ .+..+|+.+|++...++..+
T Consensus 78 ~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i 138 (143)
T 1k6k_A 78 TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFI 138 (143)
T ss_dssp CEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999999999999999999999999754 36789999999999998765
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.76 E-value=6.7e-18 Score=189.92 Aligned_cols=197 Identities=26% Similarity=0.415 Sum_probs=144.9
Q ss_pred CCCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
..+++++|++..++.+.+.+. .....++||+||||||||++|++||..+ +.+|+.++|
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~----------~~~~~~v~~ 181 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES----------NATFFNISA 181 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEECS
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------cCcEEEeeH
Confidence 457889999999999998772 2345789999999999999999999987 778999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhh------cCcEEEEEe
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLA------RGQLRCIGA 314 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~------~g~irvI~a 314 (900)
+.+.. .+.|..+..++.++..+.... ++||||||||.|...... .....+.+.|+..+. ...+++|++
T Consensus 182 ~~l~~--~~~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 182 ASLTS--KYVGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp CCC---------CHHHHHHHHHHHHHSS-SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred HHhhc--cccchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 98875 467888888899998887765 678999999999765443 122334445555543 456899999
Q ss_pred cCHHHHHHHhhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
||+.. ..++++.+||. .+.+..|+.+++..|++.+... .+..++++.+..++..+.+|.. .....
T Consensus 259 tn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~-----~~l~~ 324 (389)
T 3vfd_A 259 TNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYSG-----SDLTA 324 (389)
T ss_dssp ESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCH-----HHHHH
T ss_pred cCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCH-----HHHHH
Confidence 98754 37999999997 4888999999999999877765 5667888899989888866633 24555
Q ss_pred HHHHHH
Q 046258 394 LVDEAC 399 (900)
Q Consensus 394 Lld~a~ 399 (900)
|+..++
T Consensus 325 L~~~a~ 330 (389)
T 3vfd_A 325 LAKDAA 330 (389)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555544
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=184.37 Aligned_cols=196 Identities=22% Similarity=0.328 Sum_probs=151.3
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.+++++|++..++.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+.++|+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~ 151 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISAS 151 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGG
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehH
Confidence 467799999999999887742 456789999999999999999999987 7779999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC---hhhHHHhHhhhhh------cCcEEEEEec
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG---SMDAANLFKPMLA------RGQLRCIGAT 315 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~------~g~irvI~at 315 (900)
.+.. .+.|+.+..++.++..+.... ++||||||+|.|.+...... .....+.|+..+. ...+++|++|
T Consensus 152 ~l~~--~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 152 SLTS--KWVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp GGCC--SSTTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred Hhhc--cccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 8875 467888888988888777655 78899999999987654311 2233445555554 3578999999
Q ss_pred CHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
+... ..++++.+||.. +.+..|+.+++.++++.+... .+..++++.+..++..+.+|. +.+...|
T Consensus 229 n~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~G~s-----~~dl~~l 294 (357)
T 3d8b_A 229 NRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSDAFS-----GADMTQL 294 (357)
T ss_dssp SCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTTTCC-----HHHHHHH
T ss_pred CChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcCCCC-----HHHHHHH
Confidence 8764 378999999984 788999999999999887765 356688889999988886663 3466666
Q ss_pred HHHHH
Q 046258 395 VDEAC 399 (900)
Q Consensus 395 ld~a~ 399 (900)
++.++
T Consensus 295 ~~~a~ 299 (357)
T 3d8b_A 295 CREAS 299 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 40
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4e-18 Score=187.26 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=146.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHh--------cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSR--------AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~--------~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++.|-|++.+.+.|.+.+.... .|+. |...+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~l 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSEL 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGGG
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHHh
Confidence 56778899999999988886531 2332 3347999999999999999999999955 9999999876
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------H---HHHHHHHHhhCCeeec
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------S---VFNTLLQVLDDGRLTD 691 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~---~~~~Ll~~ld~g~~~d 691 (900)
.. .|+|..+. ..++...+....+||||||||.+.+ . +++.||..+|.-.
T Consensus 253 ~s------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~--- 317 (437)
T 4b4t_I 253 IQ------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--- 317 (437)
T ss_dssp CC------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC---
T ss_pred hh------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC---
Confidence 53 25665443 3345555666679999999997621 2 4556666666311
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...+++||+|||.+ ..++|+|+. |||..|.|+.++.++..+|++.+
T Consensus 318 ------~~~~ViVIaATNrp--------------------------d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~ 365 (437)
T 4b4t_I 318 ------DRGDVKVIMATNKI--------------------------ETLDPALIRPGRIDRKILFENPDLSTKKKILGIH 365 (437)
T ss_dssp ------CSSSEEEEEEESCS--------------------------TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHH
T ss_pred ------CCCCEEEEEeCCCh--------------------------hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHH
Confidence 23578999999984 568999996 99999999999999999999888
Q ss_pred HHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 770 MKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 770 l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
+.. +.+++++ ++.|+.. +..|..++|++++..+...++.
T Consensus 366 l~~-----------~~l~~dvdl~~LA~~--T~GfSGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 366 TSK-----------MNLSEDVNLETLVTT--KDDLSGADIQAMCTEAGLLALR 405 (437)
T ss_dssp HTT-----------SCBCSCCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHHH
T ss_pred hcC-----------CCCCCcCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Confidence 761 2233332 5666654 3456788999999887766553
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=184.83 Aligned_cols=199 Identities=23% Similarity=0.324 Sum_probs=143.1
Q ss_pred HHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
++.|.|++.+.+.|.+.+... ..|+. |...+||+||||||||++|++||..+.. +|+.++++++.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~----pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L~ 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGID----PPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSELV 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC----CCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC----CCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHhh
Confidence 445788888888887776531 22333 3347999999999999999999999955 99999998765
Q ss_pred cccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecC
Q 046258 629 EQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDG 692 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~ 692 (900)
. .|+|..+. +.++...+....|||||||||.+.. .+++.||..||...
T Consensus 281 s------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 344 (467)
T 4b4t_H 281 Q------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD---- 344 (467)
T ss_dssp C------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC----
T ss_pred c------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC----
Confidence 3 25665543 3345555666679999999997631 14566777776421
Q ss_pred CCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHH
Q 046258 693 QGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 693 ~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
...++++|+|||.+ ..++|+|+. |||..|.|+.++.++..+|++.++
T Consensus 345 -----~~~~ViVIaATNrp--------------------------d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 345 -----PRGNIKVMFATNRP--------------------------NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp -----CTTTEEEEEECSCT--------------------------TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred -----CCCcEEEEeCCCCc--------------------------ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 23578999999984 568999986 999999999999999999998887
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
.. ..+.-.++ ++.|++. +..|.+++|++++..+...++.
T Consensus 394 ~~-------~~l~~dvd---l~~LA~~--T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 394 KS-------MSVERGIR---WELISRL--CPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp TT-------SCBCSSCC---HHHHHHH--CCSCCHHHHHHHHHHHHHHHHH
T ss_pred cC-------CCCCCCCC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Confidence 62 11111222 4556654 3356688999999877766553
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.74 E-value=5e-18 Score=162.86 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=113.1
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.++|.+.+++.+.+.+.... ....++||+||||||||++|++||+...+.+.+|+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHh-------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 47888999999999998872 22236999999999999999999999877788999 999876442
Q ss_pred CCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcc
Q 046258 639 APPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSG 718 (900)
Q Consensus 639 ~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~ 718 (900)
....+.+..+.+++||||||+.+++++|..|+++|... ..++++|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-----------~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-----------HRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS-----------SCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc-----------CCCEEEEEECCcCHHHHHH-
Confidence 12334455556789999999999999999999999542 2467899999998776654
Q ss_pred cCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCC
Q 046258 719 MMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLS 758 (900)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~ 758 (900)
...|.++|++|+.. .|.++||+
T Consensus 123 ------------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ------------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ------------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ------------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 56799999999965 47777774
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=4.7e-17 Score=176.16 Aligned_cols=196 Identities=23% Similarity=0.368 Sum_probs=147.0
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.+++++|++..++.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+.++|+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~ 88 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------SATFLNISAA 88 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEEEST
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEeeHH
Confidence 467799999999999887632 245689999999999999999999987 6779999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---ChhhHHHhHhhhhhc-------CcEEEEEe
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSMDAANLFKPMLAR-------GQLRCIGA 314 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~~-------g~irvI~a 314 (900)
.+.. .+.|..+..++.++..+.... +.||||||+|.+....+.. ......+.|+..++. +.+++|++
T Consensus 89 ~l~~--~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 89 SLTS--KYVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp TTSS--SSCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred HHhh--cccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 8865 456788888888888777655 7789999999998765431 123344445444431 46889999
Q ss_pred cCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 315 TTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
|+... ..++++.+||.. +.++.|+.+++..|++.+... .+..++++.+..++..+.+|.. .....
T Consensus 166 tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~~~-----~~l~~ 231 (297)
T 3b9p_A 166 TNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGYSG-----SDLTA 231 (297)
T ss_dssp ESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTCCH-----HHHHH
T ss_pred cCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCH-----HHHHH
Confidence 98765 378999999975 778899999999998877665 3456788888888888765532 24445
Q ss_pred HHHHHH
Q 046258 394 LVDEAC 399 (900)
Q Consensus 394 Lld~a~ 399 (900)
+++.++
T Consensus 232 l~~~a~ 237 (297)
T 3b9p_A 232 LAKDAA 237 (297)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 565554
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=2.8e-16 Score=191.91 Aligned_cols=177 Identities=19% Similarity=0.301 Sum_probs=124.6
Q ss_pred CCCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc
Q 046258 179 DPVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g 249 (900)
..++|++..++.+...+.+. +..++||+||||||||++|++||+.+.+.+.| |+.+||+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~-------~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEES-------MIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTC-------EEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcc-------eEEEechhcccc
Confidence 35899999999988877641 11259999999999999999999999766555 999999998754
Q ss_pred cccc-chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEEEEec
Q 046258 250 AKYR-GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRCIGAT 315 (900)
Q Consensus 250 ~~~~-g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irvI~at 315 (900)
.... |.+ .+.+.... +.|||||||+.+. .++.+.|+++|+.|. +++|++|
T Consensus 564 ~~~~~~~l-------~~~~~~~~-~~vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 564 HSTSGGQL-------TEKVRRKP-YSVVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CCCC---C-------HHHHHHCS-SSEEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cccccchh-------hHHHHhCC-CeEEEEeCccccC--------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 3221 222 22233333 5679999998774 356678999988653 5889998
Q ss_pred CH-----HHHHHH--hhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcc-----cCcccChhHHHHHHHHh
Q 046258 316 TL-----EEYRKY--VEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGH-----HGVRIQDRALVVAAQLS 378 (900)
Q Consensus 316 t~-----~~~~~~--~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~-----~~v~i~~eal~~l~~~s 378 (900)
|. ...... ....|.|.+||. .|.++.|+.++...|++.+...+... ..+.++++++..++...
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 83 211111 115799999995 57788889999999888776665332 23568999999887654
No 45
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.7e-18 Score=188.93 Aligned_cols=200 Identities=17% Similarity=0.279 Sum_probs=144.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++.+.|.+.+.+.|.+.+... ..|+. |...+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTllAkAiA~e~~~---~f~~v~~s~l 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLLARACAAQTNA---TFLKLAAPQL 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGG
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHHHHHHHHHhCC---CEEEEehhhh
Confidence 5677899999988888876542 22333 3347999999999999999999999955 9999999876
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HH---HHHHHHHHhhCCeeec
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------IS---VFNTLLQVLDDGRLTD 691 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~---~~~~Ll~~ld~g~~~d 691 (900)
.. .|+|..+. +.++...+....|||||||||.+. .. +.+.||..||.-.
T Consensus 252 ~~------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--- 316 (434)
T 4b4t_M 252 VQ------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--- 316 (434)
T ss_dssp CS------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC---
T ss_pred hh------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC---
Confidence 43 25665442 234444555566999999999751 12 3566777777411
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...+++||+|||.+ ..++|+|++ |||..|.|++++.++..+|++.+
T Consensus 317 ------~~~~ViVIaaTNrp--------------------------~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 317 ------SDDRVKVLAATNRV--------------------------DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364 (434)
T ss_dssp ------SSCSSEEEEECSSC--------------------------CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred ------CCCCEEEEEeCCCc--------------------------hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHH
Confidence 12468999999984 568999976 99999999999999999999988
Q ss_pred HHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 770 MKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 770 l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
+..+ .+.-.++ ++.|+.. +..|.+++|++++..+...++.
T Consensus 365 ~~~~-------~~~~dvd---l~~lA~~--t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 365 SRKM-------TTDDDIN---WQELARS--TDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp HHHS-------CBCSCCC---HHHHHHH--CSSCCHHHHHHHHHHHHHHHHH
T ss_pred hcCC-------CCCCcCC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Confidence 8622 1111222 5566654 3456688999999887776654
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=2.3e-17 Score=188.07 Aligned_cols=198 Identities=21% Similarity=0.321 Sum_probs=145.2
Q ss_pred CCCCCCCCchHHHHHHHHHHc------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILS------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-.+++++|.+..++.+.+.+. ...+.++||+||||||||++|+++|..+ .+.+|+.+++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v~~ 201 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISS 201 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEECC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEEeH
Confidence 346779999999999988762 2345689999999999999999999986 1556999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---ChhhHHHhHhhhhh-----cCcEEEEEec
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSMDAANLFKPMLA-----RGQLRCIGAT 315 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-----~g~irvI~at 315 (900)
+.+.. .+.|+.+..++.++..+.... ++||||||||.+.+..... ....+.+.|+..+. .+.+.||++|
T Consensus 202 ~~l~~--~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 202 SDLVS--KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp C-----------CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred HHHHh--hhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 98865 456777777888888777654 7889999999997755432 22344555555553 4579999999
Q ss_pred CHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDL 394 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~L 394 (900)
|+.. ..++++.+||.. +.++.|+.+++..|++.+... .+..+++..+..++..+.+|.. .+...+
T Consensus 279 n~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~sg-----adl~~l 344 (444)
T 2zan_A 279 NIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGYSG-----ADISII 344 (444)
T ss_dssp SCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTCCH-----HHHHHH
T ss_pred CCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCH-----HHHHHH
Confidence 8774 379999999974 788999999999999877654 3455788888899988876643 366666
Q ss_pred HHHHH
Q 046258 395 VDEAC 399 (900)
Q Consensus 395 ld~a~ 399 (900)
+..++
T Consensus 345 ~~~a~ 349 (444)
T 2zan_A 345 VRDAL 349 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-17 Score=185.37 Aligned_cols=199 Identities=22% Similarity=0.313 Sum_probs=145.4
Q ss_pred HHHHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++.|.|++.+++.|.+.+... ..|+ +|...+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~----~~prGvLL~GPPGtGKTllAkAiA~e~~~---~~~~v~~s~l 251 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI----KPPKGVLLYGPPGTGKTLLAKAVAATIGA---NFIFSPASGI 251 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHHHTC---EEEEEEGGGT
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehhhh
Confidence 4567889999998888887653 1233 34447999999999999999999999955 9999999876
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeec
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTD 691 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d 691 (900)
.. .|+|..+. ..++...+....|||||||||.+.+ .+++.||..||.-.
T Consensus 252 ~s------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 316 (437)
T 4b4t_L 252 VD------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--- 316 (437)
T ss_dssp CC------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS---
T ss_pred cc------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc---
Confidence 53 25554432 2344555566779999999997631 24577888887421
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQ 769 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~ 769 (900)
...+++||+|||.+ ..++|+|++ |||..|.|+.++.++..+|++.+
T Consensus 317 ------~~~~vivI~ATNrp--------------------------~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (437)
T 4b4t_L 317 ------NLGQTKIIMATNRP--------------------------DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364 (437)
T ss_dssp ------CTTSSEEEEEESST--------------------------TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHH
T ss_pred ------CCCCeEEEEecCCc--------------------------hhhCHHHhCCCccceeeecCCcCHHHHHHHHHHH
Confidence 23578999999984 568999985 69999999999999999999988
Q ss_pred HHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 770 MKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 770 l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
+... ...-.++ ++.|+.. +..|.+++|++++..+...++
T Consensus 365 ~~~~-------~~~~d~d---l~~lA~~--t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 365 TAKV-------KKTGEFD---FEAAVKM--SDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp HHTS-------CBCSCCC---HHHHHHT--CCSCCHHHHHHHHHHHHHHHH
T ss_pred hcCC-------CCCcccC---HHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 8621 1111222 5666653 445678899999987766554
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.73 E-value=4.1e-17 Score=178.56 Aligned_cols=210 Identities=18% Similarity=0.266 Sum_probs=156.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhc---CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRA---GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~---g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
+..++|++.+++.+.+.+..... ......+|..++||+||||||||++|+++|+.+.. +|+.++|+++...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~v~~~~l~~~--- 90 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSDLVSK--- 90 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC---EEEEEEHHHHHTT---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC---CEEEEchHHHhhc---
Confidence 34578888888888887743321 11122345558999999999999999999999844 8999999775321
Q ss_pred ccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhCCeeecCCCceeecC
Q 046258 634 SRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
|+|..+. ..+....+....+||||||||.+.+ .+++.|+..|+.-. ....
T Consensus 91 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~ 153 (322)
T 3eie_A 91 ---------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQ 153 (322)
T ss_dssp ---------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCC
Confidence 3333221 2234445556679999999998854 46788888887421 1235
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
+++||+|||.+ ..++++|++||+..+.|++++.++..+|++.++.
T Consensus 154 ~v~vi~atn~~--------------------------~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~--------- 198 (322)
T 3eie_A 154 GVLVLGATNIP--------------------------WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG--------- 198 (322)
T ss_dssp CEEEEEEESCG--------------------------GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT---------
T ss_pred ceEEEEecCCh--------------------------hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc---------
Confidence 68999999973 4589999999999999999999999999998776
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
+....+++..++.|+.... .|..++|..+++.+...++.+....
T Consensus 199 ~~~~~~~~~~l~~la~~t~--g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 199 DTPCVLTKEDYRTLGAMTE--GYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp TCCCCCCHHHHHHHHHTTT--TCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 2245678999999997644 4668999999999988888876654
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-17 Score=184.20 Aligned_cols=199 Identities=23% Similarity=0.356 Sum_probs=145.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHh--------cCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSR--------AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~--------~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++.+.|++.+.+.|.+.+.... .|+. |...+||+||||||||++|+++|..+.. +|+.++++++
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~----~prGiLL~GPPGtGKT~lakAiA~~~~~---~~~~v~~~~l 242 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGID----PPRGVLLYGPPGTGKTMLVKAVANSTKA---AFIRVNGSEF 242 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTTTHHHHHHHHHHHHTC---EEEEEEGGGT
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecchh
Confidence 45678899988888888776431 2433 3347999999999999999999999955 9999999876
Q ss_pred ccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhCCeeec
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH--------------ISVFNTLLQVLDDGRLTD 691 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~--------------~~~~~~Ll~~ld~g~~~d 691 (900)
.. .|+|..+. ..++...+....||+||||||.+. ..+++.||..||.-.
T Consensus 243 ~~------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~--- 307 (428)
T 4b4t_K 243 VH------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD--- 307 (428)
T ss_dssp CC------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC---
T ss_pred hc------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC---
Confidence 43 25565443 234555556667999999998642 135678888888411
Q ss_pred CCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecC-CCCHHHHHHHHHH
Q 046258 692 GQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFD-PLSHEQLRKVARL 768 (900)
Q Consensus 692 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~-pl~~e~~~~I~~~ 768 (900)
...+++||+|||.+ ..++|+|++ |||..|.|+ +++.++...|++.
T Consensus 308 ------~~~~v~vI~aTN~~--------------------------~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~ 355 (428)
T 4b4t_K 308 ------QSTNVKVIMATNRA--------------------------DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGT 355 (428)
T ss_dssp ------SSCSEEEEEEESCS--------------------------SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHH
T ss_pred ------CCCCEEEEEecCCh--------------------------hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 23578999999984 568999996 999999996 5899999999988
Q ss_pred HHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 769 QMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 769 ~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
++.. ..+++++ ++.|+.. +..|.+++|++++..+...++.
T Consensus 356 ~~~~-----------~~l~~~~dl~~lA~~--t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 356 IASK-----------MSLAPEADLDSLIIR--NDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp HHHS-----------SCBCTTCCHHHHHHH--TTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhcC-----------CCCCcccCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Confidence 8761 2233222 5666654 3356688999999887766553
No 50
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.72 E-value=7.3e-18 Score=201.24 Aligned_cols=197 Identities=21% Similarity=0.357 Sum_probs=131.9
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+++++.|.+...+.+.+.+.. ..+..+||+||||||||++|+++|..+ +.+|+.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEecc
Confidence 356688888888887775531 345679999999999999999999998 888999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC--C----hhhHHHhHhhhhh----cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE--G----SMDAANLFKPMLA----RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~--~----~~~~~~~L~~~l~----~g~irvI~ 313 (900)
+.++. +|.|+.+..++.+|..++... |+||||||||.+.+.+... + ...+.+.|+..|+ ...+.||+
T Consensus 545 ~~l~s--~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 545 PELLT--MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHHT--TTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred chhhc--cccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 99987 689999999999999988765 8999999999998765421 1 1234566666664 45689999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+.+. +|+++.| ||+. |+++.|+.++|.+||+.+..+.... ++.-+..++..+.+|-.. +
T Consensus 622 aTN~p~~-----lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----~~~dl~~la~~t~g~SGa-----d 686 (806)
T 3cf2_A 622 ATNRPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNGFSGA-----D 686 (806)
T ss_dssp C-CCSSS-----SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----CC---------------------C
T ss_pred eCCCchh-----CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCCHH-----H
Confidence 9998864 8999999 9986 8899999999999997665432111 122345667777666443 6
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
...++.+|+..
T Consensus 687 i~~l~~~A~~~ 697 (806)
T 3cf2_A 687 LTEICQRACKL 697 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766643
No 51
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.72 E-value=1.7e-15 Score=200.66 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=98.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHH-HH--------
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEV-EE-------- 269 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~-~~-------- 269 (900)
.+.++||+||||||||++|+.+.... + +..++.+++++..... .+...+... ..
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~-----~----~~~~~~infsa~ts~~--------~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS-----S----LYDVVGINFSKDTTTE--------HILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC-----S----SCEEEEEECCTTCCHH--------HHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC-----C----CCceEEEEeecCCCHH--------HHHHHHHHHhhhccccCCcc
Confidence 35699999999999999996655432 2 5678899988765321 122222221 10
Q ss_pred -----cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------cEEEEEecCHHHHHHHhhccHHH
Q 046258 270 -----AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------QLRCIGATTLEEYRKYVEKDAAF 330 (900)
Q Consensus 270 -----~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~irvI~att~~~~~~~~~~d~al 330 (900)
.+..+||||||++....+ ..|.......|+++++.| ++.+|+|+|+........++++|
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp~~d--~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLPKLD--KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCSCCC--SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred ccCCCCCceEEEEeccccccccc--ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 123479999999864332 235556667888887743 37899999876422223579999
Q ss_pred HcccceeeecCCChHHHHHHHHHHHHHHh
Q 046258 331 ERRFQQVYVAEPSVPDTVSILRGLKEKYE 359 (900)
Q Consensus 331 ~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~ 359 (900)
.|||.++.++.|+.+++..|+..+...+-
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHT
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988776643
No 52
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.3e-16 Score=171.71 Aligned_cols=199 Identities=25% Similarity=0.389 Sum_probs=148.7
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
.+++++|.+..++++.+.+.. ..+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~~ 84 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVVG 84 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEEG
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeh
Confidence 467799999999999887743 456789999999999999999999987 777999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---ChhhHHHhHhhhh-------hcCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSMDAANLFKPML-------ARGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l-------~~g~irvI~ 313 (900)
+.+.. .+.|.....++.++..+.... ++||||||+|.+.+..+.. +.....+.+..++ ..+.+++|+
T Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 85 SELVK--KFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161 (285)
T ss_dssp GGGCC--CSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEE
T ss_pred HHHHH--hccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 88865 467888888888888877655 7889999999998765441 2333334444433 245799999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+|+... ..++++.+ ||.. +.++.|+.+++.+|++.+...+ .+. .+..+..++..+.+| .+.+
T Consensus 162 ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g~-----~~~~ 226 (285)
T 3h4m_A 162 ATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEGC-----VGAE 226 (285)
T ss_dssp ECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTTC-----CHHH
T ss_pred eCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCCC-----CHHH
Confidence 998764 37899999 9975 7889999999999998766542 221 222355666666544 4557
Q ss_pred HHHHHHHHHHHhh
Q 046258 391 AIDLVDEACANVR 403 (900)
Q Consensus 391 a~~Lld~a~a~~~ 403 (900)
...++..+.....
T Consensus 227 i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 227 LKAICTEAGMNAI 239 (285)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 53
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=173.62 Aligned_cols=210 Identities=18% Similarity=0.265 Sum_probs=153.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHhc---CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRA---GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~---g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 634 (900)
+.+.|++.+.+.+.+.+..... .......|..++||+||||||||++|+++|..+. ..+|+.++++++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~----- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVS----- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHh-----
Confidence 4477888888888777753211 0111123445799999999999999999999883 34899999987542
Q ss_pred cccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 635 RLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
.|+|..+. ..+....+....+||||||||.+. ..+++.|+..++.-. ....+
T Consensus 85 -------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 85 -------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp -------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred -------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 13343321 223444455667999999999882 246788888887421 12357
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
++||+|||.+ ..++++|++||+..+.+++++.++...|++.++. +
T Consensus 150 v~vI~atn~~--------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~---------~ 194 (322)
T 1xwi_A 150 ILVLGATNIP--------------------------WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG---------T 194 (322)
T ss_dssp EEEEEEESCT--------------------------TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT---------T
T ss_pred EEEEEecCCc--------------------------ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh---------c
Confidence 8999999984 4578999999999999999999999999988876 2
Q ss_pred CccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 782 VALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
....+++..++.|+... ..|..++|+.+++.+...++.+.+..
T Consensus 195 ~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 195 TQNSLTEADFRELGRKT--DGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp CCBCCCHHHHHHHHHTC--TTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 23567899999999763 45668999999999998888776543
No 54
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=3.3e-17 Score=179.75 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=149.6
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
+.+...+.++|++.+++.+...+...... ..+..+++|+||||||||++|+++|+.+. .+++.++|+.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~~~- 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR----KEPLEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIEKP- 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH----CSCCCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTTTCCSH-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc----CCCCCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeccccCCh-
Confidence 33334456888888888888888765321 12223699999999999999999999984 48889998765321
Q ss_pred ccccccCCCCCCcccccccchhHHHHh--CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCC-------CceeecCCe
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVRR--RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ-------GRTVDFRNT 702 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~~--~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~-------g~~~~~~~~ 702 (900)
+.+.+.+.. ..+++||||||+.+++..++.|+++++++.+..-. .......++
T Consensus 78 ------------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 78 ------------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ------------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ------------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 123333333 46789999999999999999999999987654211 112234578
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
++|++||.. ..|+++|++||+.++.|.+++.+++..++..++. ..
T Consensus 140 ~~i~~t~~~--------------------------~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-------~~-- 184 (324)
T 1hqc_A 140 TLIGATTRP--------------------------GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-------LL-- 184 (324)
T ss_dssp EEEEEESCC--------------------------SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-------TT--
T ss_pred EEEEeCCCc--------------------------ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH-------hc--
Confidence 899999974 4578899999988999999999999888877665 22
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
.+.+++++++.|+.+ ++++ .|.+.++++..
T Consensus 185 ~~~~~~~~~~~l~~~-~~G~--~r~l~~~l~~~ 214 (324)
T 1hqc_A 185 GVRITEEAALEIGRR-SRGT--MRVAKRLFRRV 214 (324)
T ss_dssp TCCCCHHHHHHHHHH-SCSC--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-ccCC--HHHHHHHHHHH
Confidence 357899999999987 4566 78888887654
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.71 E-value=3.9e-17 Score=176.87 Aligned_cols=197 Identities=21% Similarity=0.364 Sum_probs=142.3
Q ss_pred CCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
++++++|.+..++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.++|
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~~ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEECH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEEh
Confidence 466799999999888887642 455679999999999999999999987 677999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC------CChhhHHHhHhhhhh----cCcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT------EGSMDAANLFKPMLA----RGQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~----~g~irvI~ 313 (900)
+.+.. .+.|+.+..++.+|..+.... ++||||||++.+.+..+. .......+.|+..+. ...+++|+
T Consensus 83 ~~l~~--~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~ 159 (301)
T 3cf0_A 83 PELLT--MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159 (301)
T ss_dssp HHHHH--HHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEE
T ss_pred HHHHh--hhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 98865 456666777888888776654 788999999999865322 112234455555554 45799999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
+||+... .++++.+ ||.. ++++.|+.++|.+|++.+..... +. .+..+..++..+.+|- +.+
T Consensus 160 atn~~~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~----~~-~~~~~~~la~~~~g~s-----g~d 224 (301)
T 3cf0_A 160 ATNRPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VA-KDVDLEFLAKMTNGFS-----GAD 224 (301)
T ss_dssp EESCGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BC-SSCCHHHHHHTCSSCC-----HHH
T ss_pred ecCCccc-----cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC----CC-ccchHHHHHHHcCCCC-----HHH
Confidence 9987753 7899988 9975 88899999999999987776532 11 1222345555554442 335
Q ss_pred HHHHHHHHHHH
Q 046258 391 AIDLVDEACAN 401 (900)
Q Consensus 391 a~~Lld~a~a~ 401 (900)
...+++.++..
T Consensus 225 l~~l~~~a~~~ 235 (301)
T 3cf0_A 225 LTEICQRACKL 235 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 56
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=2.7e-16 Score=171.18 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=146.3
Q ss_pred CCCCchHHHHHHHHHHc---------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 180 PVIGRDEEIRRVVRILS---------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~---------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.++|++..++.+.+.+. .....++||+||||||||++|+++|+.+..... ..+.+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY---VRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---SSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---cCCCcEEEEcHH
Confidence 48999999888887654 244557999999999999999999999865432 124569999998
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhcC--cEEEEEecCHHHHH
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARG--QLRCIGATTLEEYR 321 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g--~irvI~att~~~~~ 321 (900)
.+.. .+.|.....+..++... . +.||||||+|.|.+..+. .....+.+.|+.+++.+ .+++|++|+.....
T Consensus 109 ~l~~--~~~g~~~~~~~~~~~~~---~-~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLVG--QYIGHTAPKTKEVLKRA---M-GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTCC--SSTTCHHHHHHHHHHHH---T-TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhhh--hcccccHHHHHHHHHhc---C-CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 8864 45677777776666544 3 557999999999865543 34566778888888754 68999999988777
Q ss_pred HHhhccHHHHccc-ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 322 KYVEKDAAFERRF-QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 322 ~~~~~d~al~~Rf-~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
.+...+|+|++|| ..+.++.|+.+++..|++.+... .++.++++++..+..+..+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~ 238 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGL 238 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHH
Confidence 7777789999999 45889999999999999888876 4677899999888887643
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.71 E-value=7.5e-17 Score=184.81 Aligned_cols=199 Identities=21% Similarity=0.335 Sum_probs=152.0
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
..+++++|.+..++++.+.+.. ..+.++||+||||||||++|++||..+ +.+|+.++
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~vn 270 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEEE
Confidence 4567899999999999887753 456789999999999999999999987 67799999
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC-Ch--hhHHHhHhhhhh----cCcEEEEEec
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-GS--MDAANLFKPMLA----RGQLRCIGAT 315 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~-~~--~~~~~~L~~~l~----~g~irvI~at 315 (900)
|+.+.. .+.|+.+..++.+|..+.... ++||||||||.|.+..+.. +. ....+.|+.+|+ ...+++|++|
T Consensus 271 ~~~l~~--~~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 271 GPEIMS--KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred chHhhh--hhcchhHHHHHHHHHHHHhcC-CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 999885 567889999999998887655 7889999999999876542 22 245566776665 4679999999
Q ss_pred CHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHH
Q 046258 316 TLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
|+.. ..++++.+ ||.. +.+..|+.++|.+||+.+...+. .. .+..+..++..+.+| .+.+..
T Consensus 348 n~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~----l~-~~~~l~~la~~t~g~-----s~~dL~ 412 (489)
T 3hu3_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK----LA-DDVDLEQVANETHGH-----VGADLA 412 (489)
T ss_dssp SCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC----BC-TTCCHHHHHHTCTTC-----CHHHHH
T ss_pred CCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC----Cc-chhhHHHHHHHccCC-----cHHHHH
Confidence 8775 37899998 8875 88899999999999987665422 11 122345566655444 445677
Q ss_pred HHHHHHHHHh
Q 046258 393 DLVDEACANV 402 (900)
Q Consensus 393 ~Lld~a~a~~ 402 (900)
.|+..++...
T Consensus 413 ~L~~~A~~~a 422 (489)
T 3hu3_A 413 ALCSEAALQA 422 (489)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766443
No 58
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.70 E-value=1.2e-16 Score=176.89 Aligned_cols=208 Identities=18% Similarity=0.278 Sum_probs=150.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHhc---CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRA---GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~---g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 634 (900)
+.++|++.+++.+...+..... ......+|..++||+||||||||++|+++|..+. .+|+.++|+++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~~l~~~---- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSDLVSK---- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHHHHHSC----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHHHHhhh----
Confidence 3477888888888777643210 0111234445799999999999999999999994 48999998765321
Q ss_pred cccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 635 RLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
|+|..+. ..+....+....+||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 124 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp --------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 3332221 2233444455679999999999874 36788888887421 12357
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
++||+|||.+ ..+++++++||+..+.+++++.++...|++.++. ..
T Consensus 188 v~vI~atn~~--------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~- 233 (355)
T 2qp9_X 188 VLVLGATNIP--------------------------WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG-------DT- 233 (355)
T ss_dssp EEEEEEESCG--------------------------GGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------TS-
T ss_pred eEEEeecCCc--------------------------ccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh-------hC-
Confidence 8999999983 4578999999999999999999999999988776 12
Q ss_pred CccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 046258 782 VALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLV 825 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~ 825 (900)
...+++..++.|+.... .|..++|..++++++..++.+...
T Consensus 234 -~~~~~~~~l~~la~~t~--G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 234 -PSVLTKEDYRTLGAMTE--GYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp -CBCCCHHHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999997643 456899999999999998877654
No 59
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=1.3e-16 Score=181.08 Aligned_cols=191 Identities=21% Similarity=0.302 Sum_probs=145.4
Q ss_pred CCCCCCCCchHHH---HHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 176 GKLDPVIGRDEEI---RRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 176 ~~~~~~iG~~~~i---~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
.++++++|++..+ ..+...+......++||+||||||||++|+.||+.+ +.+|+.+++....
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~~~~----- 87 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISAVTSG----- 87 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETTTCC-----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEeccCC-----
Confidence 6788999999999 788888887777899999999999999999999998 6779998864321
Q ss_pred cchHHHHHHHHHHHHH---HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHH
Q 046258 253 RGEFEERLKAVLKEVE---EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~a 329 (900)
... ++.++..+. ....+.||||||||.+....+. .|++.++++.+++|++|+.+.. ...+++
T Consensus 88 ~~~----ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~--------~LL~~le~~~v~lI~att~n~~---~~l~~a 152 (447)
T 3pvs_A 88 VKE----IREAIERARQNRNAGRRTILFVDEVHRFNKSQQD--------AFLPHIEDGTITFIGATTENPS---FELNSA 152 (447)
T ss_dssp HHH----HHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCGG---GSSCHH
T ss_pred HHH----HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHH--------HHHHHHhcCceEEEecCCCCcc---cccCHH
Confidence 112 333333322 1244788999999999876665 8899999999999999976553 356899
Q ss_pred HHcccceeeecCCChHHHHHHHHHHHHHHhcc---cCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHh
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRGLKEKYEGH---HGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~---~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
|.+|+.++.+..|+.++...+++.....+... .++.++++++..++..+.+. ...+..+++.++...
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd------~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD------ARRALNTLEMMADMA 222 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC------HHHHHHHHHHHHHHS
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHhc
Confidence 99999988899999999999998887765443 34669999999999987444 347778888777654
No 60
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.70 E-value=1.9e-17 Score=187.98 Aligned_cols=195 Identities=19% Similarity=0.252 Sum_probs=139.7
Q ss_pred cChhHHHHHhcHHHHH---HHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 552 LGQNEKERLIGLAEAV---NAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av---~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
+++...+.++|+++++ ..+...+... ++ .+++|+||||||||++|++||+.+.. +|+.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~--------~~-~~vLL~GppGtGKTtlAr~ia~~~~~---~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG--------HL-HSMILWGPPGTGKTTLAEVIARYANA---DVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT--------CC-CEEEEECSTTSSHHHHHHHHHHHTTC---EEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC--------CC-cEEEEECCCCCcHHHHHHHHHHHhCC---CeEEEEeccCC
Confidence 4444556688999888 6777777654 22 37999999999999999999999854 78888865421
Q ss_pred cccccccccCCCCCCcccccccchhHH---HHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 629 EQHSVSRLIGAPPGYVGHEEGGQLTEA---VRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~~~l~~~---~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
.. .+ ...+..+ .....++|||||||+.++...++.|+..|+++ .++||
T Consensus 88 ~~----~i------------r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-------------~v~lI 138 (447)
T 3pvs_A 88 VK----EI------------REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-------------TITFI 138 (447)
T ss_dssp HH----HH------------HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-------------SCEEE
T ss_pred HH----HH------------HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-------------ceEEE
Confidence 11 00 0111111 12346799999999999999999999999974 35677
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
++|+.+. ...+.++|++|+ .++.|.|++.+++..++.+.+......++. ..+.
T Consensus 139 ~att~n~------------------------~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~--~~~~ 191 (447)
T 3pvs_A 139 GATTENP------------------------SFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGG--QDIV 191 (447)
T ss_dssp EEESSCG------------------------GGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTT--SSEE
T ss_pred ecCCCCc------------------------ccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhcc--ccCc
Confidence 7665443 356889999999 688899999999999999988743322211 3578
Q ss_pred cCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 786 VTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 786 ~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
++++++++|+.+ |+++ +|.+.++++.++.
T Consensus 192 i~~~al~~L~~~-~~Gd--~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL-VNGD--ARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH-HCSC--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-CCCC--HHHHHHHHHHHHH
Confidence 999999999988 8777 9999999987654
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=1.4e-17 Score=191.01 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCCCCCCchHHHHHHHHHHc---c--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVIGRDEEIRRVVRILS---R--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~---~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
.++.++|++..++.+..++. . ..+.++||+||||||||++|+++|+.+.. +.+|+.++++.+.. +
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~~~--~ 104 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEVYS--T 104 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGGCC--S
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHHHH--H
Confidence 35789999998776555443 2 34468999999999999999999999821 15699999998875 5
Q ss_pred ccchHHHHHHHHHHHH---HHcCCCeEEEEcchhhhhhCCCC
Q 046258 252 YRGEFEERLKAVLKEV---EEAEGKVILFIDEIHLVLGAGRT 290 (900)
Q Consensus 252 ~~g~~~~~l~~~~~~~---~~~~~~~iL~iDEi~~l~~~~~~ 290 (900)
+.|+.+. +...|..+ .. ..++||||||+|.+.+.+..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~-~~~~il~iDEid~l~~~r~~ 144 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRI-KETKEVYEGEVTELTPCETE 144 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEE-EEEEEEEEEEEEEEEEC---
T ss_pred hhhhhHH-HHHHHHHHHhhhh-cCCcEEEEechhhcccccCC
Confidence 6788776 77777765 32 34789999999999977654
No 62
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.70 E-value=4.3e-16 Score=165.22 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=134.0
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.+++++|.+..++.+.+++.. ..+.++||+||||||||++|+++|+.+ +.+++.++|+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~ 73 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGA 73 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechH
Confidence 467899999988877665431 345679999999999999999999988 5669999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC-------ChhhHHHhHhhhhh----cCcEEEEE
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-------GSMDAANLFKPMLA----RGQLRCIG 313 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~-------~~~~~~~~L~~~l~----~g~irvI~ 313 (900)
.+.. .+.|.....++.++..+.... ++||||||+|.+....... ......+.|+..+. ...+++|+
T Consensus 74 ~~~~--~~~~~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~ 150 (262)
T 2qz4_A 74 EFVE--VIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLA 150 (262)
T ss_dssp TTSS--SSTTHHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHh--hccChhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEe
Confidence 8764 456777778888888776544 7889999999997654321 11122233333332 34689999
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhH-HHHHHHHhhhhccCCCChh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRA-LVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~ea-l~~l~~~s~~~~~~~~~p~ 389 (900)
+|+... ..++++.+ ||.. +.++.|+.+++.+|++.+...+ +...+.+. ...++..+.+| .+.
T Consensus 151 ~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~-----~~~ 216 (262)
T 2qz4_A 151 STNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGF-----SGA 216 (262)
T ss_dssp EESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTC-----CHH
T ss_pred cCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCC-----CHH
Confidence 998765 36789998 9964 8889999999999998887763 33344332 34555555333 344
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
+...+++.++..
T Consensus 217 ~l~~l~~~a~~~ 228 (262)
T 2qz4_A 217 DIANICNEAALH 228 (262)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 666777766543
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.68 E-value=4.3e-16 Score=167.77 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc
Q 046258 569 AVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE 648 (900)
Q Consensus 569 ~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~ 648 (900)
.+...+.+.+........|. .+||+||||||||++|++||+.+. .+|++++|+++... |+|..+
T Consensus 18 ~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~~~~l~~~------------~~g~~~ 81 (293)
T 3t15_A 18 KLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKMG---INPIMMSAGELESG------------NAGEPA 81 (293)
T ss_dssp HHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHHT---CCCEEEEHHHHHCC---------------HHH
T ss_pred HHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeHHHhhhc------------cCchhH
Confidence 34444444444444445554 789999999999999999999994 49999999876432 334332
Q ss_pred ccchhHHH-------HhCCCeEEEEccccccCH-------------HHHHHHHHHhhCCeeecCC--CceeecCCeEEEE
Q 046258 649 GGQLTEAV-------RRRPYSVVLFDEVEKAHI-------------SVFNTLLQVLDDGRLTDGQ--GRTVDFRNTVIIM 706 (900)
Q Consensus 649 ~~~l~~~~-------~~~~~~vlllDEidk~~~-------------~~~~~Ll~~ld~g~~~d~~--g~~~~~~~~~iI~ 706 (900)
+.+...+ +...++||||||||++.+ .+++.|+++||...+.... +.....++++||+
T Consensus 82 -~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 82 -KLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp -HHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred -HHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 2222222 344779999999998865 3679999999966544222 2344567899999
Q ss_pred ccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH--hcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 046258 707 TSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVAL 784 (900)
Q Consensus 707 tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~ 784 (900)
|||.. ..++++|+ +||+.++. .| +.++..+|++.++. . -
T Consensus 161 ttN~~--------------------------~~ld~al~R~~R~d~~i~-~P-~~~~r~~Il~~~~~-------~----~ 201 (293)
T 3t15_A 161 TGNDF--------------------------STLYAPLIRDGRMEKFYW-AP-TREDRIGVCTGIFR-------T----D 201 (293)
T ss_dssp ECSSC--------------------------CC--CHHHHHHHEEEEEE-CC-CHHHHHHHHHHHHG-------G----G
T ss_pred ecCCc--------------------------ccCCHHHhCCCCCceeEe-Cc-CHHHHHHHHHHhcc-------C----C
Confidence 99973 45788888 59977665 34 99999999986665 1 2
Q ss_pred ccCHHHHHHHHH
Q 046258 785 AVTDAALDIVLA 796 (900)
Q Consensus 785 ~~~~~a~~~l~~ 796 (900)
.++.+.+..+..
T Consensus 202 ~~~~~~l~~~~~ 213 (293)
T 3t15_A 202 NVPAEDVVKIVD 213 (293)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHhC
Confidence 455666666654
No 64
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.68 E-value=5.7e-16 Score=176.56 Aligned_cols=211 Identities=18% Similarity=0.271 Sum_probs=151.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhc---CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRA---GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~---g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
++.++|++.+.+.+...+..... .......|..++||+||||||||++|+++|..+. ..+|+.++++++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~--- 207 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK--- 207 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh---
Confidence 45588888888888887743211 0011123445899999999999999999999983 348999999875421
Q ss_pred ccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCceeecC
Q 046258 634 SRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
|+|..+. ..++...+....+||||||||.+. ..+++.|+..|+.-. ....
T Consensus 208 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~ 270 (444)
T 2zan_A 208 ---------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDND 270 (444)
T ss_dssp -------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCS
T ss_pred ---------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCC
Confidence 3333222 234444555677999999999883 357788888887421 1235
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAER 780 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~ 780 (900)
+++||+|||.+ ..++++|++||+.++.+++++.++...|++.++.
T Consensus 271 ~v~vI~atn~~--------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~--------- 315 (444)
T 2zan_A 271 GILVLGATNIP--------------------------WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG--------- 315 (444)
T ss_dssp SCEEEEEESCG--------------------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT---------
T ss_pred CEEEEecCCCc--------------------------cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh---------
Confidence 78999999984 4578999999998999999999999999988775
Q ss_pred CCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 781 GVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 781 ~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
+....+++..++.|+... ..|..++|..++..++..++.+.+..
T Consensus 316 ~~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 316 STQNSLTEADFQELGRKT--DGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp TSCEECCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 123567899999999763 35678999999999999888776543
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.67 E-value=6.7e-16 Score=175.27 Aligned_cols=197 Identities=22% Similarity=0.330 Sum_probs=141.7
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
+|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|... +.+|+.++++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~ 83 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGS 83 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHH
Confidence 467899999988777765532 235679999999999999999999987 5669999999
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CCh---hhHHHhHhhhhh----cCcEEEEEe
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGS---MDAANLFKPMLA----RGQLRCIGA 314 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~---~~~~~~L~~~l~----~g~irvI~a 314 (900)
.+.. .+.|....+++.+|..+.... ++||||||+|.+.+..+. ++. ....+.|+..++ ...+++|++
T Consensus 84 ~~~~--~~~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 84 DFVE--LFVGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp GTTT--CCTTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHHH--HHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 8875 457777788888888877644 889999999999876543 111 123455555553 457999999
Q ss_pred cCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChh-HHHHHHHHhhhhccCCCChhh
Q 046258 315 TTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDR-ALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~e-al~~l~~~s~~~~~~~~~p~~ 390 (900)
|++.+. .++++.+ ||.. +.++.|+.++|.+|++.+.... .+.++ .+..++..+.+| .+.+
T Consensus 161 Tn~~~~-----Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~-----sgad 224 (476)
T 2ce7_A 161 TNRPDI-----LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGF-----VGAD 224 (476)
T ss_dssp ESCGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTC-----CHHH
T ss_pred cCChhh-----hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCC-----cHHH
Confidence 988753 7889887 9985 8889999999999988766542 22222 245555555443 3346
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
...++..++...
T Consensus 225 L~~lv~~Aal~A 236 (476)
T 2ce7_A 225 LENLVNEAALLA 236 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 66
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.67 E-value=3.4e-16 Score=169.47 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=143.4
Q ss_pred HHHhcHHHHHHHHHHHHHHH--------hcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRS--------RAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~--------~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
+.++|++.+++.+.+.+... ..++ .|..++||+||||||||++|+++|..+. .+++.++|+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHHHh
Confidence 34778888888888777642 1122 2334799999999999999999999984 4899999987643
Q ss_pred ccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHH--------------HHHHHHHHhhCCeeecCCCc
Q 046258 630 QHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHIS--------------VFNTLLQVLDDGRLTDGQGR 695 (900)
Q Consensus 630 ~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~--------------~~~~Ll~~ld~g~~~d~~g~ 695 (900)
.++|..... ...+.........+||||||||.+.+. +++.|+..|+.-.
T Consensus 88 -----~~~g~~~~~-----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------- 150 (301)
T 3cf0_A 88 -----MWFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------- 150 (301)
T ss_dssp -----HHHTTCTTH-----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------
T ss_pred -----hhcCchHHH-----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------
Confidence 233322110 122333444456699999999986543 5788999998421
Q ss_pred eeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHH
Q 046258 696 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDV 773 (900)
Q Consensus 696 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~ 773 (900)
...+++||+|||.+ ..+++++++ ||+..+.|++++.++..+|++.++..
T Consensus 151 --~~~~v~vi~atn~~--------------------------~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~- 201 (301)
T 3cf0_A 151 --TKKNVFIIGATNRP--------------------------DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK- 201 (301)
T ss_dssp --TTSSEEEEEEESCG--------------------------GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-
T ss_pred --CCCCEEEEEecCCc--------------------------cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-
Confidence 23578999999983 457788887 99999999999999999998887762
Q ss_pred HHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHcc
Q 046258 774 AIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVRE 827 (900)
Q Consensus 774 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~~ 827 (900)
.++...++.+ .|+... ..|..++|++++++++..++.+.+...
T Consensus 202 ------~~~~~~~~~~---~la~~~--~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 202 ------SPVAKDVDLE---FLAKMT--NGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp ------SCBCSSCCHH---HHHHTC--SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCccchHH---HHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222234433 444332 223456999999999998888776543
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=7.4e-17 Score=174.50 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=127.6
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh--------hc
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV--------AG 249 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~--------~g 249 (900)
.++|+++.++++.+.+.+ ....++||+||||||||++|++||..+.+.+.| |+.+||+++. +|
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~-------~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRP-------LVTLNCAALNESLLESELFG 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSC-------CCEEECSSCCHHHHHHHHTC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCC-------eEEEeCCCCChHHHHHHhcC
Confidence 589999999999998876 567899999999999999999999988665555 9999998752 33
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-------------EEEEEecC
Q 046258 250 AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ-------------LRCIGATT 316 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~-------------irvI~att 316 (900)
+. .|.|.+......+.+..+++++ ||||||+.+... ....|+++++.+. +++|++||
T Consensus 76 ~~-~g~~tg~~~~~~g~~~~a~~g~-L~LDEi~~l~~~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 76 HE-KGAFTGADKRREGRFVEADGGT-LFLDEIGDISPL--------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp CC-SSCCC---CCCCCHHHHHTTSE-EEEESCTTCCHH--------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred cc-ccccCchhhhhcCHHHhcCCCE-EEEeccccCCHH--------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 32 3444333322233344455455 999999988653 3347778887653 89999998
Q ss_pred HHHHHHHh--hccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHh
Q 046258 317 LEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLS 378 (900)
Q Consensus 317 ~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s 378 (900)
.+...... ...+.|..||..+.+..|+..+|.+ +++.+..++....+ ..++++++..+..++
T Consensus 146 ~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 146 RDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp SCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred ccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 75322211 2357788899888887787665544 55666555544333 458999998888764
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.66 E-value=3.9e-16 Score=171.18 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=150.4
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 630 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~ 630 (900)
++++...+.++|++.+++.+...+... ..| ..+||.||||||||++|+++++.+.. +++.++++.....
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~~-------~~~-~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~~~~~~~~ 87 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSKG-------KIP-HIILHSPSPGTGKTTVAKALCHDVNA---DMMFVNGSDCKID 87 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHTT-------CCC-SEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEETTTCCHH
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHcC-------CCC-eEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEcccccCHH
Confidence 445555567899999988888888632 223 36888999999999999999999954 8899998764311
Q ss_pred cccccccCCCCCCcccccccchhHHHHhC----CCeEEEEccccccC-HHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTEAVRRR----PYSVVLFDEVEKAH-ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~~----~~~vlllDEidk~~-~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
.+. ..+.+..... .+.||||||+|.++ .+.++.|++.+++. ..+++||
T Consensus 88 -~i~---------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-----------~~~~~iI 140 (324)
T 3u61_B 88 -FVR---------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-----------SSNCSII 140 (324)
T ss_dssp -HHH---------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-----------GGGCEEE
T ss_pred -HHH---------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-----------CCCcEEE
Confidence 100 1122222221 46899999999999 99999999999862 2568899
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
+|||.. ..+.++|.+|| .++.|.+++.+++.+|+...+..+...+...| +.
T Consensus 141 ~~~n~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~ 191 (324)
T 3u61_B 141 ITANNI--------------------------DGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IA 191 (324)
T ss_dssp EEESSG--------------------------GGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CC
T ss_pred EEeCCc--------------------------cccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CC
Confidence 999973 45889999999 68999999999999999998888777777765 47
Q ss_pred cCH-HHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 786 VTD-AALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 786 ~~~-~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+++ +++++|+.. +.++ +|.+.+.++...
T Consensus 192 ~~~~~~~~~l~~~-~~gd--~R~a~~~L~~~~ 220 (324)
T 3u61_B 192 IADMKVVAALVKK-NFPD--FRKTIGELDSYS 220 (324)
T ss_dssp BSCHHHHHHHHHH-TCSC--TTHHHHHHHHHG
T ss_pred CCcHHHHHHHHHh-CCCC--HHHHHHHHHHHh
Confidence 888 999999977 6666 888888887654
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=2.9e-14 Score=174.40 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=125.9
Q ss_pred CCCCCchHHHHHHHHHHcc---------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc
Q 046258 179 DPVIGRDEEIRRVVRILSR---------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g 249 (900)
..++|++..++.+...+.+ +...++||+||||||||++|+++|+.+ +.+++.+||+.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4589999999988887753 122369999999999999999999998 566999999987542
Q ss_pred --------cc--ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc-----------
Q 046258 250 --------AK--YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ----------- 308 (900)
Q Consensus 250 --------~~--~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~----------- 308 (900)
.. |.|.-+. ..+.+.+.... +.|||||||+.+. .++.+.|+++|++|.
T Consensus 528 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~-~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQG--GLLTDAVIKHP-HAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHT--THHHHHHHHCS-SEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCcccc--chHHHHHHhCC-CcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 11 2221111 12334444444 6789999998764 356779999998664
Q ss_pred --EEEEEecCHHH----------------------HHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcc--
Q 046258 309 --LRCIGATTLEE----------------------YRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGH-- 361 (900)
Q Consensus 309 --irvI~att~~~----------------------~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~-- 361 (900)
+++|++||... ..+ ...|.|.+||.. |.++.|+.+++..|++.+..++...
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK--IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHH--HSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHH--hcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45888887521 111 357999999964 7788889999999988777654321
Q ss_pred ---cCcccChhHHHHHHHHh
Q 046258 362 ---HGVRIQDRALVVAAQLS 378 (900)
Q Consensus 362 ---~~v~i~~eal~~l~~~s 378 (900)
..+.++++++..++...
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHH
T ss_pred HCCcEEEeCHHHHHHHHHhC
Confidence 13568899998888754
No 70
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.65 E-value=8.7e-16 Score=170.27 Aligned_cols=221 Identities=19% Similarity=0.163 Sum_probs=136.2
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC----CCceeEecccccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD----ENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~----~~~~i~i~~~~~~~~~~~~ 634 (900)
.++|++.+++.+..+.. ....+++||+||||||||++|+++|+.+.+. ..+ ++|..........
T Consensus 25 ~i~G~~~~~~~l~~~~~---------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~~ 92 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAV---------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDWA 92 (350)
T ss_dssp GSCSCHHHHHHHHHHHH---------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTTC
T ss_pred hccChHHHHHHHHHHhh---------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccchh
Confidence 46777765554332221 1112369999999999999999999988531 122 3444332211100
Q ss_pred c------------ccCCCCC-----Cccccc---------ccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCe
Q 046258 635 R------------LIGAPPG-----YVGHEE---------GGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGR 688 (900)
Q Consensus 635 ~------------l~G~~~g-----~~g~~~---------~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~ 688 (900)
. ++..+.+ ..|... .......+..+.++|||||||++++++.++.|+++++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 0 0000010 011000 0000112223347899999999999999999999999875
Q ss_pred --eecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCC-CHHHHHHH
Q 046258 689 --LTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPL-SHEQLRKV 765 (900)
Q Consensus 689 --~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl-~~e~~~~I 765 (900)
+....+......++++|+|+|.. ...++++|++||+..+.++++ +.++...|
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~n~~-------------------------~~~l~~~L~~R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSGNPE-------------------------EGDLRPQLLDRFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEECSC-------------------------SCCCCHHHHTTCSEEEECCCCCSHHHHHHH
T ss_pred eEEEecceEEeeCCceEEEEEeCCC-------------------------CCCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 33322222223478999999963 235899999999877999998 45666688
Q ss_pred HHHHHHHH-----------------HHHH---HhcCCccccCHHHHHHHHHcCCCCCC-CchHHHHHHHHHH
Q 046258 766 ARLQMKDV-----------------AIRL---AERGVALAVTDAALDIVLAESYDPIY-GARPIRRWLEKKV 816 (900)
Q Consensus 766 ~~~~l~~~-----------------~~~~---~~~~~~~~~~~~a~~~l~~~~~~~~~-g~R~L~~~i~~~i 816 (900)
+.+.+... ...+ ......+.++++++++|.++.|..+. +.|.+.++++.+.
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSAR 299 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 87643210 0111 11112358999999999999998776 6899888886543
No 71
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=168.65 Aligned_cols=207 Identities=16% Similarity=0.242 Sum_probs=147.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCC---CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGL---GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~---~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
.++.++|++.+++.+.+.+......- ....++..++||+||||||||++|+++|..+. .+|+.++|+++...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISASSLTSK-- 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEGGGGCCS--
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEehHHhhcc--
Confidence 34458899999999988876531110 00123344799999999999999999999984 48999999875432
Q ss_pred cccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhCCeeecCCCceeec
Q 046258 633 VSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
|+|.... ..+........++||||||||.+.+ .+++.|+..++..... ..
T Consensus 157 ----------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~ 219 (357)
T 3d8b_A 157 ----------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SE 219 (357)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CC
T ss_pred ----------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CC
Confidence 3332211 2233444456679999999998732 4678888888853211 12
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||+|||.. ..+++++++||+..+.+.+++.++...|+..++. .
T Consensus 220 ~~v~vI~atn~~--------------------------~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-------~ 266 (357)
T 3d8b_A 220 DRILVVGATNRP--------------------------QEIDEAARRRLVKRLYIPLPEASARKQIVINLMS-------K 266 (357)
T ss_dssp CCEEEEEEESCG--------------------------GGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-------T
T ss_pred CCEEEEEecCCh--------------------------hhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-------h
Confidence 478899999973 4578999999988999999999999999988776 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELS 821 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~ 821 (900)
. .+.++++.++.|+... ..|..+.|+.++..+....+.
T Consensus 267 ~--~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~ir 304 (357)
T 3d8b_A 267 E--QCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPIR 304 (357)
T ss_dssp S--CBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHHH
T ss_pred c--CCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence 2 3568899999998764 345578899888877665544
No 72
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.65 E-value=1.7e-15 Score=167.17 Aligned_cols=183 Identities=20% Similarity=0.275 Sum_probs=136.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
.++++++|++..++.+...+.. ....++||+||||||||++|+++|+.+ +.+|+.++|+.+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~~-- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMIEK-- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCCS--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhccc--
Confidence 4577899999999999888764 455689999999999999999999987 56699999877531
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc--------------------EE
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ--------------------LR 310 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~--------------------ir 310 (900)
.+.+. .. +.....+.+||||||+.+... ..+.|+..++.+. ++
T Consensus 94 --~~~~~----~~---~~~~~~~~vl~lDEi~~l~~~--------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 94 --SGDLA----AI---LTNLSEGDILFIDEIHRLSPA--------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --HHHHH----HH---HHTCCTTCEEEEETGGGCCHH--------HHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --hhHHH----HH---HHhccCCCEEEEechhhcCHH--------HHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 22222 22 223344677999999988643 3447777776543 78
Q ss_pred EEEecCHHHHHHHhhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|++|++... .++.|.+||. .+.++.|+.+++..+++..... .++.++++++..++..+.+ .|.
T Consensus 157 ~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G------~~r 221 (338)
T 3pfi_A 157 LIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRSRS------TPR 221 (338)
T ss_dssp EEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTT------CHH
T ss_pred EEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCc------CHH
Confidence 9999987553 7899999994 5889999999999998877765 4577899999888885533 355
Q ss_pred hHHHHHHHHHHHh
Q 046258 390 KAIDLVDEACANV 402 (900)
Q Consensus 390 ~a~~Lld~a~a~~ 402 (900)
.+..+++.+....
T Consensus 222 ~l~~~l~~~~~~a 234 (338)
T 3pfi_A 222 IALRLLKRVRDFA 234 (338)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776665443
No 73
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=172.86 Aligned_cols=206 Identities=18% Similarity=0.228 Sum_probs=144.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCC---CCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGL---GRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~---~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
.+..++|++.+++.+...+......- .....|..++||+||||||||++|++||..+.. +|+.++|+++...
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNISAASLTSK-- 187 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEECSCCC-----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEeeHHHhhcc--
Confidence 34568899999998888875543210 011233457999999999999999999999854 9999999876432
Q ss_pred cccccCCCCCCcccccc--cchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 633 VSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
|+|.... ..+....+....+||||||||.+ ...+++.|+..++...- ...
T Consensus 188 ----------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 250 (389)
T 3vfd_A 188 ----------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-------AGD 250 (389)
T ss_dssp --------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----------
T ss_pred ----------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-------cCC
Confidence 3332221 22334444556699999999988 45577888888874211 012
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||+|||. ...+++++++||+..+.|.+++.++...|+..++. .
T Consensus 251 ~~v~vI~atn~--------------------------~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~-------~ 297 (389)
T 3vfd_A 251 DRVLVMGATNR--------------------------PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC-------K 297 (389)
T ss_dssp -CEEEEEEESC--------------------------GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------T
T ss_pred CCEEEEEecCC--------------------------chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH-------h
Confidence 46899999997 34678999999988899999999999999987776 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
. ...++++++..|+.... .+..+.|..++..+....+
T Consensus 298 ~--~~~l~~~~~~~la~~~~--g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 298 Q--GSPLTQKELAQLARMTD--GYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp S--CCCSCHHHHHHHHHHTT--TCCHHHHHHHHHHHTTHHH
T ss_pred c--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence 2 35789999999987643 3446788887766555443
No 74
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.64 E-value=1.1e-15 Score=170.76 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=141.4
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc--
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS-- 634 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~-- 634 (900)
.+.++|++.+++.+.........+ ..|..++||+||||||||++|+++|+.+.. ..+++.++|..+.......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cCCcccccchhhhhcccchhH
Confidence 456889998877766555555433 223347999999999999999999999964 5688888877643221000
Q ss_pred -------c----------------------------ccCCCCCCcccccc---cchhHHHH----hCC----CeEEEEcc
Q 046258 635 -------R----------------------------LIGAPPGYVGHEEG---GQLTEAVR----RRP----YSVVLFDE 668 (900)
Q Consensus 635 -------~----------------------------l~G~~~g~~g~~~~---~~l~~~~~----~~~----~~vlllDE 668 (900)
. +.+...++.|.... ..+..+.. ... ++||||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 0 00111111111100 01111111 111 36999999
Q ss_pred ccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcc
Q 046258 669 VEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRL 748 (900)
Q Consensus 669 idk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~ 748 (900)
|+.++++.++.|++.+++.. ..+ +|+++|.+...+..... .. ...++++|++||
T Consensus 198 i~~l~~~~~~~L~~~le~~~-----------~~~-~ii~t~~~~~~i~~t~~--~~------------~~~l~~~l~sR~ 251 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDM-----------APV-LIMATNRGITRIRGTSY--QS------------PHGIPIDLLDRL 251 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTT-----------CCE-EEEEESCSEEECBTSSC--EE------------ETTCCHHHHTTE
T ss_pred ccccChHHHHHHHHHhhCcC-----------CCe-eeeecccceeeeeccCC--CC------------cccCCHHHHhhc
Confidence 99999999999999998632 233 34444432111100000 00 245789999999
Q ss_pred cceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 749 DEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 749 ~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
..+.|+||+.+++..|+...+.. . .+.++++++++|++++|+++ .|.+.++++.++..+
T Consensus 252 -~~i~~~~~~~~e~~~il~~~~~~-------~--~~~~~~~~l~~l~~~~~~G~--~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 252 -LIVSTTPYSEKDTKQILRIRCEE-------E--DVEMSEDAYTVLTRIGLETS--LRYAIQLITAASLVC 310 (368)
T ss_dssp -EEEEECCCCHHHHHHHHHHHHHH-------T--TCCBCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHH
T ss_pred -cEEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 55899999999999999887762 3 35799999999999887655 899999998766543
No 75
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.64 E-value=2.9e-15 Score=162.00 Aligned_cols=207 Identities=19% Similarity=0.243 Sum_probs=144.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcC---CCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAG---LGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g---~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
.+..++|++.+++.+.+.+...... ......|..++||+||||||||++|+++|..+. .+|+.++|+.+...
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~-- 93 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS---ATFLNISAASLTSK-- 93 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEESTTTSSS--
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEeeHHHHhhc--
Confidence 3456889999999888887653210 000112334799999999999999999999984 48999999775321
Q ss_pred cccccCCCCCCccccc--ccchhHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhCCeeecCCCceeec
Q 046258 633 VSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFDEVEKAH-----------ISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllDEidk~~-----------~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
|+|... ...+.........+||||||||.+. ..+++.|+..++..... ...
T Consensus 94 ----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~ 157 (297)
T 3b9p_A 94 ----------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDG 157 (297)
T ss_dssp ----------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----------
T ss_pred ----------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCC
Confidence 222211 1223344445667999999999873 45677888888742211 012
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.+++||+|||.+ ..+++++++||+..+.+++++.++...|+..++. .
T Consensus 158 ~~v~vi~~tn~~--------------------------~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-------~ 204 (297)
T 3b9p_A 158 DRIVVLAATNRP--------------------------QELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-------K 204 (297)
T ss_dssp -CEEEEEEESCG--------------------------GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-------G
T ss_pred CcEEEEeecCCh--------------------------hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-------h
Confidence 458899999973 4578999999999999999999999998887775 2
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
. ...+++++++.|+.... .+..+.|+.+++.+....+
T Consensus 205 ~--~~~~~~~~~~~la~~~~--g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 205 Q--GSPLDTEALRRLAKITD--GYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp G--SCCSCHHHHHHHHHHTT--TCCHHHHHHHHHHHTTHHH
T ss_pred c--CCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence 2 24678999999987643 4456789888877665544
No 76
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=2.9e-15 Score=158.45 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=138.1
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.+++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++|..+ +.+++.++++
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i~~~ 79 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGS 79 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEECSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEEeHH
Confidence 467799999888777665431 235679999999999999999999987 4559999998
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---Chh---hHHHhHhhhhh----cCcEEEEEe
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSM---DAANLFKPMLA----RGQLRCIGA 314 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~---~~~~~L~~~l~----~g~irvI~a 314 (900)
.+.. .+.|.....++.++..+.... ++++||||+|.+....+.. +.. ...+.++..+. ...+.+|++
T Consensus 80 ~~~~--~~~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~ 156 (257)
T 1lv7_A 80 DFVE--MFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 156 (257)
T ss_dssp SSTT--SCCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEE
T ss_pred HHHH--HhhhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEe
Confidence 8765 345666777888888776433 7789999999998765431 111 23344444333 457899999
Q ss_pred cCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhH-HHHHHHHhhhhccCCCChhh
Q 046258 315 TTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRA-LVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~ea-l~~l~~~s~~~~~~~~~p~~ 390 (900)
|+..+ ..++++.+ ||.. +.+..|+.++|.+|++.+..++ .+++++ +..++..+.+ +.+.+
T Consensus 157 tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~~G-----~~~~d 220 (257)
T 1lv7_A 157 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPG-----FSGAD 220 (257)
T ss_dssp ESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTT-----CCHHH
T ss_pred eCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHcCC-----CCHHH
Confidence 98764 37889988 8975 7788999999999987766542 233222 3334433322 34557
Q ss_pred HHHHHHHHHHHhh
Q 046258 391 AIDLVDEACANVR 403 (900)
Q Consensus 391 a~~Lld~a~a~~~ 403 (900)
...++..++....
T Consensus 221 l~~l~~~a~~~a~ 233 (257)
T 1lv7_A 221 LANLVNEAALFAA 233 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 77
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.63 E-value=9.5e-17 Score=153.49 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=105.2
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
.++|++.+++.+.+.+..... ...+++|+||||||||++|+++|.... +|+.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-------~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-------RTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-------CSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC-------CCCcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCChHh-------
Confidence 477888999999998887631 123599999999999999999998763 89999998764321
Q ss_pred CCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcc
Q 046258 639 APPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSG 718 (900)
Q Consensus 639 ~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~ 718 (900)
..+.+..+.+++||||||+.++++.|..|+++++++. ..++++|+|||.+...+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2344555667899999999999999999999999742 25688999999876543 3
Q ss_pred cCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCC
Q 046258 719 MMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLS 758 (900)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~ 758 (900)
.. |+++|++||.. .|.++||+
T Consensus 122 ------------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ------------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -------------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ------------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 45 89999999865 56777774
No 78
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.63 E-value=1.6e-15 Score=161.17 Aligned_cols=184 Identities=20% Similarity=0.210 Sum_probs=116.5
Q ss_pred CCCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh------
Q 046258 177 KLDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA------ 248 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------ 248 (900)
+|+.++|++..++++++.+.+ ....+++|+||||||||++|+++|+.+.+.+.| |+.++|+.+..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~-------~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGP-------FISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSC-------EEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCC-------eEEEecCCCChhHHHHH
Confidence 577899999999999887764 556799999999999999999999987554444 99999987621
Q ss_pred --cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEE
Q 046258 249 --GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIG 313 (900)
Q Consensus 249 --g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~ 313 (900)
|.. .|.+.+......+.+..+. +.+|||||++.+... ..+.|.++++.+ .+++|+
T Consensus 77 l~g~~-~~~~~g~~~~~~~~l~~a~-~~~l~lDEi~~l~~~--------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~ 146 (265)
T 2bjv_A 77 LFGHE-AGAFTGAQKRHPGRFERAD-GGTLFLDELATAPMM--------VQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (265)
T ss_dssp HHCCC----------CCCCHHHHTT-TSEEEEESGGGSCHH--------HHHHHHHHHHHCEECCCCC--CEECCCEEEE
T ss_pred hcCCc-ccccccccccccchhhhcC-CcEEEEechHhcCHH--------HHHHHHHHHHhCCeecCCCcccccCCeEEEE
Confidence 221 2222222211112233344 346999999998653 334777777643 578999
Q ss_pred ecCHHHHHHH--hhccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccCc----ccChhHHHHHHHH
Q 046258 314 ATTLEEYRKY--VEKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHGV----RIQDRALVVAAQL 377 (900)
Q Consensus 314 att~~~~~~~--~~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~v----~i~~eal~~l~~~ 377 (900)
+|+....... -...+.|.+||..+.+..|+..+|.+ +++.+..++....+. .++++++..+..+
T Consensus 147 atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 147 ATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred ecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 9986432211 12468899999877777777766544 444444444433333 5889988887764
No 79
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=1.3e-15 Score=161.04 Aligned_cols=201 Identities=21% Similarity=0.306 Sum_probs=133.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcC--CC-CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAG--LG-RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g--~~-~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
.+.++|++.+++.+.+.+...... +. ....+..+++|+||||||||++|+++|..+.. +++.++++.+...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~i~~~~~~~~--- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFVEM--- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC---CEEEECSCSSTTS---
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---CEEEEeHHHHHHH---
Confidence 345778887777777665543210 00 00122236999999999999999999999844 8999999876432
Q ss_pred ccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecCCCcee
Q 046258 634 SRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRTV 697 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~~ 697 (900)
+.|.... ..+.........+++||||||.+.+ ..++.|+..++.-.
T Consensus 85 ---------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 146 (257)
T 1lv7_A 85 ---------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------- 146 (257)
T ss_dssp ---------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------
T ss_pred ---------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------
Confidence 2222111 1223333344568999999987643 45677787777411
Q ss_pred ecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHH
Q 046258 698 DFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAI 775 (900)
Q Consensus 698 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~ 775 (900)
...++++|+|||.. ..+++.+++ ||+..+.+.+++.++..+|++.++.+
T Consensus 147 ~~~~~~vI~~tn~~--------------------------~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--- 197 (257)
T 1lv7_A 147 GNEGIIVIAATNRP--------------------------DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--- 197 (257)
T ss_dssp SSSCEEEEEEESCT--------------------------TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT---
T ss_pred cCCCEEEEEeeCCc--------------------------hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc---
Confidence 12568999999984 346777776 99999999999999999988777651
Q ss_pred HHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 776 RLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 776 ~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
..+++++ +..++ +.|++ |.+|+|++++++++....
T Consensus 198 --------~~l~~~~~~~~la-~~~~G-~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 198 --------VPLAPDIDAAIIA-RGTPG-FSGADLANLVNEAALFAA 233 (257)
T ss_dssp --------SCBCTTCCHHHHH-HTCTT-CCHHHHHHHHHHHHHHHH
T ss_pred --------CCCCccccHHHHH-HHcCC-CCHHHHHHHHHHHHHHHH
Confidence 2344444 34444 55765 459999999988766544
No 80
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.61 E-value=8.4e-15 Score=159.27 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=139.4
Q ss_pred CCCCchHHHHHHHHHHcc--------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 180 PVIGRDEEIRRVVRILSR--------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.++|++..++.+...+.+ ..+.++||+||||||||++|+++|+.+ +.+++.++|+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 489999999999887754 356789999999999999999999998 55699999988
Q ss_pred hhhcccccch-HHHHHHHHHHH----HHHcCCCeEEEEcchhhhhhCCCCCChh----hHHHhHhhhhhcC---------
Q 046258 246 LVAGAKYRGE-FEERLKAVLKE----VEEAEGKVILFIDEIHLVLGAGRTEGSM----DAANLFKPMLARG--------- 307 (900)
Q Consensus 246 l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~~iL~iDEi~~l~~~~~~~~~~----~~~~~L~~~l~~g--------- 307 (900)
+... .+.|. ....++.++.. +.....+.||||||+|.+.+.....+.. ...+.|+++++.+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 7541 12231 22334444331 1222225679999999998765432221 1256778888754
Q ss_pred ---cEEEEEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHH----HHHHHHhc-----ccCcccChhHHHHH
Q 046258 308 ---QLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILR----GLKEKYEG-----HHGVRIQDRALVVA 374 (900)
Q Consensus 308 ---~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr----~l~~~~~~-----~~~v~i~~eal~~l 374 (900)
.+++|++++.... .....++.|.+||.. +.++.|+.+++..|++ .+...|.. ...+.++++++..+
T Consensus 165 ~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 165 KTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp ECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred cCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 5788888632100 012478999999975 8889999999999987 44444332 12246899999999
Q ss_pred HHHhhhh--ccCCCChhhHHHHHHHHHHH
Q 046258 375 AQLSARY--ITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 375 ~~~s~~~--~~~~~~p~~a~~Lld~a~a~ 401 (900)
+..+... .....-+..+..+++.+...
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 8877321 00122344666666666544
No 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.61 E-value=2.2e-13 Score=181.03 Aligned_cols=444 Identities=18% Similarity=0.229 Sum_probs=233.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHH-HH--H------
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKE-VE--E------ 269 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~-~~--~------ 269 (900)
.+.|+||+||||||||+++......+ | +..++.+++++-.... .+...++. +. .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l-----~----~~~~~~infS~~Tta~--------~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF-----P----DFEVVSLNFSSATTPE--------LLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC-----T----TEEEEEECCCTTCCHH--------HHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC-----C----CCceEEEEeeCCCCHH--------HHHHHHhhcceEEeccCCCc
Confidence 46799999999999998876544332 2 5668899998754321 11122211 00 0
Q ss_pred ------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------cEEEEEecCHHHHHHHhhccHH
Q 046258 270 ------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------QLRCIGATTLEEYRKYVEKDAA 329 (900)
Q Consensus 270 ------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~irvI~att~~~~~~~~~~d~a 329 (900)
.++.+|+||||++.-..+ .-|.......|+++++.| .+.+|+|+++........++++
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp~~D--~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLPSTD--KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCCCCC--TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCCCCcc--ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 122369999999864332 235556677888887633 3678899876532223457899
Q ss_pred HHcccceeeecCCChHHHHHHHHHHHHHHhccc-Ccc-cChhHHHHHHHH----hhhhccC-----CCChhhHHHHHHHH
Q 046258 330 FERRFQQVYVAEPSVPDTVSILRGLKEKYEGHH-GVR-IQDRALVVAAQL----SARYITG-----RHLPDKAIDLVDEA 398 (900)
Q Consensus 330 l~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~-~v~-i~~eal~~l~~~----s~~~~~~-----~~~p~~a~~Lld~a 398 (900)
|.|||.++.++.|+.++...|...+...+.... .+. +.+..+.+...+ ...+.+. -+.+.+..+++...
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGl 1523 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHH
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHH
Confidence 999999999999999999998877766543321 111 223333332222 1222221 23445555555554
Q ss_pred HHHhhh-hccCChhHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046258 399 CANVRV-QLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLK 477 (900)
Q Consensus 399 ~a~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~ 477 (900)
+....- ...+....+..|-. | . ++....++-.+.++ .-+.
T Consensus 1524 l~~~~~~~~~~~~~lvrLW~H-----E--~----------------------------~RVF~DRLv~~~Dr----~~f~ 1564 (3245)
T 3vkg_A 1524 LEAIQTMDGCTLEGLVRLWAH-----E--A----------------------------LRLFQDRLVETEEK----EWTD 1564 (3245)
T ss_dssp HHHHHTSSCCCTTHHHHHHHH-----H--H----------------------------HHHHTTTCSSHHHH----HHHH
T ss_pred HHhcCccccCCHHHHHHHHHH-----H--H----------------------------HHHHHHHcCCHHHH----HHHH
Confidence 433211 11111111111110 0 0 00000011000000 0000
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhcccCcccccc---cCCCChhhHHHHHHHHhcCCccccCh
Q 046258 478 QKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIGQLEGNQSDENLML---TETVGPDQIAEVVSRWTGIPVTRLGQ 554 (900)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~ 554 (900)
+.+.+. ......+.. . . .+.... --.++. -.+++.+++..++...+.. +..
T Consensus 1565 ~~l~~~-----~~~~F~~~~--~----~----------~~~~pl-lf~~f~~~~Y~~v~~~~l~~~l~~~L~~----yn~ 1618 (3245)
T 3vkg_A 1565 KKIDEV-----ALKHFPSVN--L----D----------ALKRPI-LYSNWLTKDYQPVNRSDLREYVKARLKV----FYE 1618 (3245)
T ss_dssp HHHHHH-----HHHHCTTSC--G----G----------GGCSSC-CCCSSCC----CCCHHHHHHHHHHHHHT----TC-
T ss_pred HHHHHH-----HHHhcCcch--h----h----------hcccCc-chhhhccccCccCCHHHHHHHHHHHHHH----HHh
Confidence 000000 000000000 0 0 000000 000111 1244556666666654321 111
Q ss_pred h-HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 555 N-EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 555 ~-~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
. ..-.|+=.++|++.|++..+.. +.|.||.||+|..|+||++|+|..|... +..++.+.++.
T Consensus 1619 ~~~~m~LVlF~daleHv~RI~RIL-------~qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~vfqi~i~k------- 1681 (3245)
T 3vkg_A 1619 EELDVPLVLFNEVLDHILRIDRVF-------RQPQGHALLIGVSGGGKSVLSRFVAWMN---GLSIYTIKVNN------- 1681 (3245)
T ss_dssp -----CCCCCHHHHHHHHHHHHHH-------TSTTCCEEEEESTTSSHHHHHHHHHHHT---TCEEECCC----------
T ss_pred cccCceEEeHHHHHHHHHHHHHHH-------ccCCCCeEEecCCCCcHHHHHHHHHHHh---CCeeEEEeeeC-------
Confidence 1 1112444568888888877666 6788999999999999999999998776 33566665543
Q ss_pred ccccCCCCCCcccccccchhHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCC----------------
Q 046258 634 SRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQ---------------- 693 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~---------------- 693 (900)
+|-..+-...|...++ +....|++|+|-+-.++.++..+..+|.+|.+.+-.
T Consensus 1682 --------~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a 1753 (3245)
T 3vkg_A 1682 --------NYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETA 1753 (3245)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHH
Confidence 1211111112222232 345689999999999999999999999888764321
Q ss_pred ---Cceee-------------cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCC
Q 046258 694 ---GRTVD-------------FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPL 757 (900)
Q Consensus 694 ---g~~~~-------------~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl 757 (900)
|...+ -.|..||++.++..+.+.. +-+..|+|+++| .+-.|.+.
T Consensus 1754 ~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~-------------------R~r~fPaLvncc-tIDWf~~W 1813 (3245)
T 3vkg_A 1754 QRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHN-------------------RSATSPALFNRC-VLDWFGEW 1813 (3245)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC-----------------------CTHHHHHS-EEEEEESC
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHH-------------------HHHHChHHhhCc-eeeecCCC
Confidence 10000 0233444444443222211 112348999999 88999999
Q ss_pred CHHHHHHHHHHHHH
Q 046258 758 SHEQLRKVARLQMK 771 (900)
Q Consensus 758 ~~e~~~~I~~~~l~ 771 (900)
..+.+..++.++|.
T Consensus 1814 p~eAL~~Va~~fl~ 1827 (3245)
T 3vkg_A 1814 SPEALFQVGSEFTR 1827 (3245)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
No 82
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=1.3e-15 Score=167.63 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=131.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI 637 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~ 637 (900)
..++|++.+++.+..++... .++||+||||||||++|+++|+.+.. ++.+++|+.... .+.++
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~~~---~~~~i~~~~~~~---~~~l~ 89 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTMDL---DFHRIQFTPDLL---PSDLI 89 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHTTC---CEEEEECCTTCC---HHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHhCC---CeEEEecCCCCC---hhhcC
Confidence 45778888888777776542 25999999999999999999999854 788898853221 12233
Q ss_pred CCCCCCcccccccchhHHHHhC--CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeec-CCeEEEEccCCCcHH
Q 046258 638 GAPPGYVGHEEGGQLTEAVRRR--PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDF-RNTVIIMTSNLGAEH 714 (900)
Q Consensus 638 G~~~g~~g~~~~~~l~~~~~~~--~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~-~~~~iI~tsn~~~~~ 714 (900)
|... .... .+.+. .... ..+|+|||||+++++.+++.|++.|+++.++.. |..... .++++|+|+|....
T Consensus 90 g~~~--~~~~-~~~~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~viat~np~~~- 162 (331)
T 2r44_A 90 GTMI--YNQH-KGNFE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLVLATQNPVEQ- 162 (331)
T ss_dssp EEEE--EETT-TTEEE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEEEEEECTTCC-
T ss_pred Ccee--ecCC-CCceE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEEEEecCCCcc-
Confidence 3210 0000 00000 0000 137999999999999999999999999887763 333333 35788888885310
Q ss_pred HhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHH-------------HHHHHhcC
Q 046258 715 LLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDV-------------AIRLAERG 781 (900)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~-------------~~~~~~~~ 781 (900)
.. ...++++|++||+..+.+.+++.++..+|++..+... ........
T Consensus 163 -~~-------------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 222 (331)
T 2r44_A 163 -EG-------------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI 222 (331)
T ss_dssp -SC-------------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH
T ss_pred -cC-------------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh
Confidence 00 1248999999997789999999999999998875421 00000100
Q ss_pred CccccCHHHHHHHHHc
Q 046258 782 VALAVTDAALDIVLAE 797 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~ 797 (900)
..+.+++++++++++.
T Consensus 223 ~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 223 NKVTISESLEKYIIEL 238 (331)
T ss_dssp HTCBCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHH
Confidence 1468899999998764
No 83
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.60 E-value=1.8e-15 Score=173.02 Aligned_cols=215 Identities=16% Similarity=0.228 Sum_probs=139.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
...++|++.+++.+..++... +++||+||||||||++|++||..+.. ..+|..++|.-. ..+.+
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l~~-~~~f~~~~~~~~----t~~dL 84 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQN-ARAFEYLMTRFS----TPEEV 84 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGBSS-CCEEEEECCTTC----CHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHHhh-hhHHHHHHHhcC----CHHHh
Confidence 345789998888877776432 37999999999999999999998844 557777777531 12566
Q ss_pred cCCCCCCcccccccchhHHHHhC--CCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHH
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRRR--PYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEH 714 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~~--~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~ 714 (900)
+|...++.... .+.+..+.... ..+|+|||||+++++.+++.|+++|+++.++. .|........++|+|||..++
T Consensus 85 ~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~iI~ATN~lpe- 161 (500)
T 3nbx_X 85 FGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLLVAASNELPE- 161 (500)
T ss_dssp HCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEEEEEESSCCC-
T ss_pred cCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhhhhccccCCC-
Confidence 76432221111 11111110100 24699999999999999999999999998876 344455554466888885322
Q ss_pred HhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH-HHHHHHHHHHHH---------------HHHHHHH
Q 046258 715 LLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH-EQLRKVARLQMK---------------DVAIRLA 778 (900)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~-e~~~~I~~~~l~---------------~~~~~~~ 778 (900)
...+.+++++||...+.+++++. ++...|+..... .+. .+.
T Consensus 162 ----------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~-~~~ 218 (500)
T 3nbx_X 162 ----------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYE-RWQ 218 (500)
T ss_dssp ----------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHH-HHH
T ss_pred ----------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHH-HHH
Confidence 23467899999977788888887 777788765321 011 111
Q ss_pred hcCCccccCHHHHHHHHHcC-------CCCCCCchHHHHHHH
Q 046258 779 ERGVALAVTDAALDIVLAES-------YDPIYGARPIRRWLE 813 (900)
Q Consensus 779 ~~~~~~~~~~~a~~~l~~~~-------~~~~~g~R~L~~~i~ 813 (900)
..-..+.+++++++++++.. -....+.|.+..++.
T Consensus 219 ~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr 260 (500)
T 3nbx_X 219 KEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIR 260 (500)
T ss_dssp HHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHH
T ss_pred hcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHH
Confidence 11114689999999887653 122345677766654
No 84
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.60 E-value=8.4e-15 Score=150.66 Aligned_cols=187 Identities=21% Similarity=0.345 Sum_probs=136.1
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~ 634 (900)
...++|++..++.+...+... ..+ +++|+||||||||++|+.+++.+... ...++.++++.........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK-------NIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT-------CCC--CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC-------CCC--eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 345788888888888877532 222 49999999999999999999987432 2356777775432211100
Q ss_pred cccCCCCCCcccccccchhHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 635 RLIGAPPGYVGHEEGGQLTEAVR-----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
..+..... ...+.||+|||++.+++..++.|+++++.. ..++++|+|||
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~ 140 (226)
T 2chg_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCN 140 (226)
T ss_dssp ---------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEES
T ss_pred ---------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeC
Confidence 01111111 245689999999999999999999999862 25678899988
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDA 789 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~ 789 (900)
. ...+.+.+.+|+. .+.|.|++.+++..++...+.. .| +.++++
T Consensus 141 ~--------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~ 184 (226)
T 2chg_A 141 Y--------------------------VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG--VKITED 184 (226)
T ss_dssp C--------------------------GGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHH
T ss_pred C--------------------------hhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 6 3457899999995 9999999999999988877652 23 458999
Q ss_pred HHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 790 ALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 790 a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
+++.|... +.++ .|.+.+.++..+.
T Consensus 185 ~~~~l~~~-~~g~--~r~l~~~l~~~~~ 209 (226)
T 2chg_A 185 GLEALIYI-SGGD--FRKAINALQGAAA 209 (226)
T ss_dssp HHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCC--HHHHHHHHHHHHh
Confidence 99999864 6666 8888888876543
No 85
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=6.6e-15 Score=158.20 Aligned_cols=205 Identities=20% Similarity=0.293 Sum_probs=134.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCC----CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLG----RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~----~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
.+.++|++.+++.+.+.+........ ....+..++||+||||||||++|+++|..+.. +++.++++++...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~~~~v~~~~~~~~-- 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA---TFIRVVGSELVKK-- 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC---EEEEEEGGGGCCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehHHHHHh--
Confidence 34577888888888777754311100 00123347999999999999999999999844 8999998765432
Q ss_pred cccccCCCCCCcccccc--cchhHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhCCeeecCCCceeec
Q 046258 633 VSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKA-----------HISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~-----------~~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
+.|.... ..+.........+||||||||.+ +...+..|+++++...-.. ..
T Consensus 91 ----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~ 154 (285)
T 3h4m_A 91 ----------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD------AR 154 (285)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC------SS
T ss_pred ----------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC------CC
Confidence 2232211 12333444556689999999997 5567777777665311000 12
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRL 777 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~ 777 (900)
.+++||+|||. ...+++.+++ ||+.++.|++++.++..+|++.++..
T Consensus 155 ~~~~vI~ttn~--------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~----- 203 (285)
T 3h4m_A 155 GDVKIIGATNR--------------------------PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK----- 203 (285)
T ss_dssp SSEEEEEECSC--------------------------GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT-----
T ss_pred CCEEEEEeCCC--------------------------chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc-----
Confidence 47899999997 3557899988 99999999999999999999877651
Q ss_pred HhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHH
Q 046258 778 AERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTEL 820 (900)
Q Consensus 778 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l 820 (900)
.++.... .+..|+... ..+..|+++.++..+...++
T Consensus 204 --~~~~~~~---~~~~l~~~~--~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 204 --MNLAEDV---NLEEIAKMT--EGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp --SCBCTTC---CHHHHHHHC--TTCCHHHHHHHHHHHHHHHH
T ss_pred --CCCCCcC---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 2211122 244455432 23447788887766555443
No 86
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=153.54 Aligned_cols=200 Identities=22% Similarity=0.263 Sum_probs=125.4
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCC---CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLG---RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR 635 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~---~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~ 635 (900)
.++|++.+++.+.+.+........ ....+..++||+||||||||++|+++|+.+.. +++.++|+.+...
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~~~~----- 78 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEFVEV----- 78 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTTSSS-----
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHHHhh-----
Confidence 366777777777665544321111 00123347999999999999999999999854 8999999876432
Q ss_pred ccCCCCCCccccc--ccchhHHHHhCCCeEEEEccccccC------------HHH---HHHHHHHhhCCeeecCCCceee
Q 046258 636 LIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFDEVEKAH------------ISV---FNTLLQVLDDGRLTDGQGRTVD 698 (900)
Q Consensus 636 l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllDEidk~~------------~~~---~~~Ll~~ld~g~~~d~~g~~~~ 698 (900)
|.|... ...+........++||||||||.+. ... ++.|+..++... .
T Consensus 79 -------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~---------~ 142 (262)
T 2qz4_A 79 -------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG---------T 142 (262)
T ss_dssp -------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC---------T
T ss_pred -------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC---------C
Confidence 112111 1122333344457999999999983 233 344555554311 1
Q ss_pred cCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHH
Q 046258 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIR 776 (900)
Q Consensus 699 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~ 776 (900)
..++++|+|||.. ..+++++++ ||+..+.|.+++.++..+|++.++..
T Consensus 143 ~~~~~vi~~tn~~--------------------------~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~---- 192 (262)
T 2qz4_A 143 TDHVIVLASTNRA--------------------------DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS---- 192 (262)
T ss_dssp TCCEEEEEEESCG--------------------------GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH----
T ss_pred CCCEEEEecCCCh--------------------------hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh----
Confidence 2478999999973 446788887 99999999999999999999988873
Q ss_pred HHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 777 LAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 777 ~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
.+ +..+.+. ...|.... ..+..++|++++..+....
T Consensus 193 ---~~--~~~~~~~~~~~l~~~~--~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 193 ---LK--LTQSSTFYSQRLAELT--PGFSGADIANICNEAALHA 229 (262)
T ss_dssp ---TT--CCBTHHHHHHHHHHTC--TTCCHHHHHHHHHHHHTC-
T ss_pred ---CC--CCcchhhHHHHHHHHC--CCCCHHHHHHHHHHHHHHH
Confidence 22 3444443 46666542 2344578888887655443
No 87
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.58 E-value=8.3e-15 Score=159.97 Aligned_cols=193 Identities=20% Similarity=0.341 Sum_probs=140.5
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEeccccc
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDMSEY 627 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~ 627 (900)
.++.+.....++|++.+++.+...+.. ...| +++|+||||||||++|+.+++.+.+.. .+++.++++..
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-------~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-------KNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-------TCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-------CCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 345555556688999888877766632 1223 599999999999999999999985532 24777887653
Q ss_pred ccccccccccCCCCCCcccccccchhHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCe
Q 046258 628 MEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNT 702 (900)
Q Consensus 628 ~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~ 702 (900)
...... ...+..... ..++.|++|||+|.++.+.++.|++.+++ ...++
T Consensus 80 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~ 133 (319)
T 2chq_A 80 RGIDVV---------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSC 133 (319)
T ss_dssp TCTTTS---------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSE
T ss_pred cChHHH---------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCC
Confidence 211110 011112221 13468999999999999999999999986 22578
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
+||+++|. ...+.+.+.+|+ ..+.|.|++.+++..++...+. ..|
T Consensus 134 ~~i~~~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~-------~~~- 178 (319)
T 2chq_A 134 RFILSCNY--------------------------VSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICE-------KEG- 178 (319)
T ss_dssp EEEEEESC--------------------------GGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHH-------TTC-
T ss_pred eEEEEeCC--------------------------hhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHH-------HcC-
Confidence 89999986 345789999999 6999999999999888877765 333
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+.+++++++.|+. .++++ .|.+.+.++...
T Consensus 179 -~~i~~~~l~~l~~-~~~G~--~r~~~~~l~~~~ 208 (319)
T 2chq_A 179 -VKITEDGLEALIY-ISGGD--FRKAINALQGAA 208 (319)
T ss_dssp -CCBCHHHHHHHHH-TTTTC--HHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHH-HcCCC--HHHHHHHHHHHH
Confidence 5789999999995 46666 888888776543
No 88
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.58 E-value=1.3e-14 Score=164.66 Aligned_cols=197 Identities=22% Similarity=0.367 Sum_probs=134.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHhc-----CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRA-----GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~-----g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~ 632 (900)
+.+.|++++++.+.+.+..... .+. ...|. ++||+||||||||++|+++|..+. .+|+.++|+++.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g-~~~p~-gvLL~GppGtGKT~Laraia~~~~---~~f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIG-ARMPK-GILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTT-CCCCS-EEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcC-CCCCC-eEEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHHHHHH--
Confidence 3477888887777776655421 111 01233 599999999999999999999984 48999999887542
Q ss_pred cccccCCCCCCccccc--ccchhHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecCCCce
Q 046258 633 VSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
|+|... ...+.........+||||||||.+.+ .+++.|+..|+.-.
T Consensus 89 ----------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-------- 150 (476)
T 2ce7_A 89 ----------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-------- 150 (476)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------
T ss_pred ----------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------
Confidence 222211 12233334445669999999998753 35778888887310
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
...+++||+|||.+ ..++|+++. ||+..+.+.+++.++..+|++.++..
T Consensus 151 -~~~~viVIaaTn~~--------------------------~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~-- 201 (476)
T 2ce7_A 151 -SKEGIIVMAATNRP--------------------------DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN-- 201 (476)
T ss_dssp -GGGTEEEEEEESCG--------------------------GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--
T ss_pred -CCCCEEEEEecCCh--------------------------hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh--
Confidence 12478999999983 446778875 99999999999999999998877651
Q ss_pred HHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
..+++++ +..|+ ..|+++ ..|+|++++.++....
T Consensus 202 ---------~~l~~~v~l~~la-~~t~G~-sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 202 ---------KPLAEDVNLEIIA-KRTPGF-VGADLENLVNEAALLA 236 (476)
T ss_dssp ---------SCBCTTCCHHHHH-HTCTTC-CHHHHHHHHHHHHHHH
T ss_pred ---------CCCcchhhHHHHH-HhcCCC-cHHHHHHHHHHHHHHH
Confidence 1223332 55565 456655 3488998887765544
No 89
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=1.6e-14 Score=158.22 Aligned_cols=191 Identities=23% Similarity=0.362 Sum_probs=138.9
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEecccccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDMSEYM 628 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~~ 628 (900)
++.+.....++|++.+++.+...+... ..| +++|+||||||||++|+++++.+.+.. ..++.+++++..
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-------SMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-------CCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-------CCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 344545556899999999988887653 222 599999999999999999999985422 246677766432
Q ss_pred cccccccccCCCCCCcccccccchhHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 629 EQHSVSRLIGAPPGYVGHEEGGQLTEAVR-----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
...... ..+..... ...+.|++|||++.++++.++.|++.+++. ..+++
T Consensus 89 ~~~~~~---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~ 142 (327)
T 1iqp_A 89 GINVIR---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVR 142 (327)
T ss_dssp HHHTTH---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEE
T ss_pred chHHHH---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCe
Confidence 111000 01111111 135789999999999999999999999862 25678
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
||+++|.. ..+.+.+.+|+ ..+.|.|++.+++..++...+. ..|
T Consensus 143 ~i~~~~~~--------------------------~~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~-------~~~-- 186 (327)
T 1iqp_A 143 FILSCNYS--------------------------SKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAE-------NEG-- 186 (327)
T ss_dssp EEEEESCG--------------------------GGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHH-------TTT--
T ss_pred EEEEeCCc--------------------------cccCHHHHhhC-cEEEecCCCHHHHHHHHHHHHH-------hcC--
Confidence 99998863 45788999999 5899999999999988877665 333
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
+.++++++++|+.. +.++ .|.+.+.++..
T Consensus 187 ~~~~~~~~~~l~~~-~~g~--~r~~~~~l~~~ 215 (327)
T 1iqp_A 187 LELTEEGLQAILYI-AEGD--MRRAINILQAA 215 (327)
T ss_dssp CEECHHHHHHHHHH-HTTC--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-CCCC--HHHHHHHHHHH
Confidence 57999999999976 4555 78877777643
No 90
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.57 E-value=8.6e-15 Score=167.73 Aligned_cols=202 Identities=19% Similarity=0.275 Sum_probs=139.2
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCC----CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLG----RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVS 634 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~----~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~ 634 (900)
.++|++.+++.+.+.+......-. ....+..++||+||||||||++|++||..+. .+|+.++|+++...
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~l~~~---- 277 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIMSK---- 277 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHHHHTS----
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchHhhhh----
Confidence 477888888888777765311000 0012334799999999999999999999984 49999999886532
Q ss_pred cccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhCCeeecCCCceeecCC
Q 046258 635 RLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFRN 701 (900)
Q Consensus 635 ~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~~ 701 (900)
|+|...+ ..++........++|||||||.+.+ .+++.|+.+|+... ...+
T Consensus 278 --------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---------~~~~ 340 (489)
T 3hu3_A 278 --------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAH 340 (489)
T ss_dssp --------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC---------TTSC
T ss_pred --------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc---------cCCc
Confidence 2232221 1122233344568999999977654 68899999998422 2357
Q ss_pred eEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 702 TVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 702 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
++||+|||.+ ..+++++.+ ||+..+.|.+++.++..+|++.++..
T Consensus 341 v~vIaaTn~~--------------------------~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~------- 387 (489)
T 3hu3_A 341 VIVMAATNRP--------------------------NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN------- 387 (489)
T ss_dssp EEEEEEESCG--------------------------GGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-------
T ss_pred eEEEEecCCc--------------------------cccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-------
Confidence 8999999984 447788887 99999999999999999999877651
Q ss_pred cCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSR 822 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~ 822 (900)
. .+. .+..+..++.. ...|..++|..++..+....+.+
T Consensus 388 ~--~l~-~~~~l~~la~~--t~g~s~~dL~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 388 M--KLA-DDVDLEQVANE--THGHVGADLAALCSEAALQAIRK 425 (489)
T ss_dssp S--CBC-TTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred C--CCc-chhhHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHh
Confidence 1 122 12234556654 33456889999988777766654
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.1e-14 Score=152.90 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=156.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-------CCceeEecccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-------ENLLVRIDMSEYMEQ 630 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~ 630 (900)
+.|.+.+.-+..+...+.....+ .+| .+++|+||||||||++++.+++.+... .-.++.+||..+.+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~----~~~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMS----SQN-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCC-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 34888888899999888877543 233 479999999999999999999999532 235889999887654
Q ss_pred ccc-----ccccCCCCCCcccccccchhHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecC
Q 046258 631 HSV-----SRLIGAPPGYVGHEEGGQLTEAVR-----RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFR 700 (900)
Q Consensus 631 ~~~-----~~l~G~~~g~~g~~~~~~l~~~~~-----~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~ 700 (900)
... ..+.|....+ |. ....+...+. .....|++|||||.+. -++.|+.+++-.. .+.+
T Consensus 95 ~~~~~~I~~~L~g~~~~~-~~-~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s 162 (318)
T 3te6_A 95 DALYEKIWFAISKENLCG-DI-SLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNS 162 (318)
T ss_dssp HHHHHHHHHHHSCCC--C-CC-CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSC
T ss_pred HHHHHHHHHHhcCCCCCc-hH-HHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCC
Confidence 322 3455553221 11 1122333333 2345799999999997 4666666665211 1235
Q ss_pred CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhccc-ceeecCCCCHHHHHHHHHHHHHHHHHH-H-
Q 046258 701 NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLD-EIVVFDPLSHEQLRKVARLQMKDVAIR-L- 777 (900)
Q Consensus 701 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~-~~i~f~pl~~e~~~~I~~~~l~~~~~~-~- 777 (900)
+++||+++|.-.- . ...+++.+.+||. ..+.|+||+.+++.+|++..+...... +
T Consensus 163 ~~~vI~i~n~~d~-~---------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~ 220 (318)
T 3te6_A 163 KLSIICVGGHNVT-I---------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHV 220 (318)
T ss_dssp CEEEEEECCSSCC-C---------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_pred cEEEEEEecCccc-c---------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccc
Confidence 7889998886210 0 1224566788996 589999999999999999999864311 0
Q ss_pred -----------------H-------hcCCccccCHHHHHHHHHcC--CCCCCCchHHHHHHHHHHHHHHHHHHHcccCCC
Q 046258 778 -----------------A-------ERGVALAVTDAALDIVLAES--YDPIYGARPIRRWLEKKVVTELSRMLVREEIDE 831 (900)
Q Consensus 778 -----------------~-------~~~~~~~~~~~a~~~l~~~~--~~~~~g~R~L~~~i~~~i~~~l~~~i~~~~~~~ 831 (900)
. -.++.+.+++++++++++.. -.+. +|..-.++++++...-.+.+.+.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD--~R~Al~ilr~A~~~ae~e~~~k~~~~~ 298 (318)
T 3te6_A 221 KVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS--TEKAFKICEAAVEISKKDFVRKGGLQK 298 (318)
T ss_dssp EECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHTTEET
T ss_pred cccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCCh--HHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 0 00113468999999999852 2344 999999999999888888877665443
No 92
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=2e-15 Score=161.01 Aligned_cols=210 Identities=19% Similarity=0.200 Sum_probs=125.8
Q ss_pred cCCccccChhHHHHHhcHHHHHHHHHHHHHHHhcCCC-CCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 546 GIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRAGLG-RPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 546 ~~~~~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~-~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
|+....+.......++|++.+++.+..........+. ....+..++||+||||||||++|+++|+.+. .+|+.++|
T Consensus 21 g~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~~~i~~ 97 (272)
T 1d2n_A 21 GTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN---FPFIKICS 97 (272)
T ss_dssp ----CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT---CSEEEEEC
T ss_pred CCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC---CCEEEEeC
Confidence 3333333333333456666665555553111111111 0134456899999999999999999999974 48999988
Q ss_pred cccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcccccc----------CHHHHHHHHHHhhCCeeecCCC
Q 046258 625 SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKA----------HISVFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 625 ~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~----------~~~~~~~Ll~~ld~g~~~d~~g 694 (900)
++ .++|...+.. ......+.......+++||||||||.+ ...+++.|+..++...
T Consensus 98 ~~--------~~~g~~~~~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~------ 162 (272)
T 1d2n_A 98 PD--------KMIGFSETAK-CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP------ 162 (272)
T ss_dssp GG--------GCTTCCHHHH-HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC------
T ss_pred HH--------HhcCCchHHH-HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc------
Confidence 64 2233210000 000011222233456799999999997 4556677777665311
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccH-HHHhcccceeecCCCCH-HHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP-ELLNRLDEIVVFDPLSH-EQLRKVARLQMKD 772 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~R~~~~i~f~pl~~-e~~~~I~~~~l~~ 772 (900)
....++++|+|||.. ..+++ .+.+||+..+.++|++. +++..++...
T Consensus 163 --~~~~~~~ii~ttn~~--------------------------~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~--- 211 (272)
T 1d2n_A 163 --PQGRKLLIIGTTSRK--------------------------DVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL--- 211 (272)
T ss_dssp --STTCEEEEEEEESCH--------------------------HHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH---
T ss_pred --CCCCCEEEEEecCCh--------------------------hhcchhhhhcccceEEcCCCccHHHHHHHHHHhc---
Confidence 112467899999873 22333 56789988999999887 7766665431
Q ss_pred HHHHHHhcCCccccCHHHHHHHHHc----CCCCCCCchHHHHHHHHHHH
Q 046258 773 VAIRLAERGVALAVTDAALDIVLAE----SYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 773 ~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~g~R~L~~~i~~~i~ 817 (900)
..++++++..+++. .|+++ +|.+.++++.+..
T Consensus 212 -----------~~~~~~~~~~l~~~~~g~~~~g~--ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 212 -----------GNFKDKERTTIAQQVKGKKVWIG--IKKLLMLIEMSLQ 247 (272)
T ss_dssp -----------TCSCHHHHHHHHHHHTTSEEEEC--HHHHHHHHHHHTT
T ss_pred -----------CCCCHHHHHHHHHHhcCCCcccc--HHHHHHHHHHHhh
Confidence 14688888888764 23334 9999999876543
No 93
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.56 E-value=9.7e-15 Score=159.99 Aligned_cols=180 Identities=24% Similarity=0.239 Sum_probs=131.2
Q ss_pred CCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
.+++++|++..++.+...+.. ....+++|+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPAIEK--- 76 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTTCCS---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccCC---
Confidence 577899999999998887753 355789999999999999999999988 55689998876532
Q ss_pred ccchHHHHHHHHHHHHHH-cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------------cEE
Q 046258 252 YRGEFEERLKAVLKEVEE-AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------------QLR 310 (900)
Q Consensus 252 ~~g~~~~~l~~~~~~~~~-~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------------~ir 310 (900)
. ..+++.+.. ...+.+|||||++.+... ..+.|+.+++.+ .++
T Consensus 77 -~-------~~l~~~l~~~~~~~~~l~lDEi~~l~~~--------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 77 -P-------GDLAAILANSLEEGDILFIDEIHRLSRQ--------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -H-------HHHHHHHTTTCCTTCEEEETTTTSCCHH--------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -h-------HHHHHHHHHhccCCCEEEEECCcccccc--------hHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1 122333333 234667999999988643 233666666543 367
Q ss_pred EEEecCHHHHHHHhhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+|++|+... ..++.|.+||. .+.+..|+.+++..+++..... .++.++++++..++..+. ..|.
T Consensus 141 ~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~------G~~r 205 (324)
T 1hqc_A 141 LIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSR------GTMR 205 (324)
T ss_dssp EEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSC------SCHH
T ss_pred EEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcc------CCHH
Confidence 889887663 25778899995 6889999999988888776654 456789999988888763 3455
Q ss_pred hHHHHHHHHHH
Q 046258 390 KAIDLVDEACA 400 (900)
Q Consensus 390 ~a~~Lld~a~a 400 (900)
.+..++..+..
T Consensus 206 ~l~~~l~~~~~ 216 (324)
T 1hqc_A 206 VAKRLFRRVRD 216 (324)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 94
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=5e-14 Score=144.84 Aligned_cols=189 Identities=22% Similarity=0.270 Sum_probs=134.7
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..+++++|++..++.+.+.+......+++|+||||||||++|+.+++.+..... ...++.++++.... .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~----~-- 82 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDERG----I-- 82 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG-----GGGEEEEETTCTTC----H--
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcccc-----ccceEEeccccccC----h--
Confidence 346679999999999999998877778999999999999999999998743321 34488888765321 1
Q ss_pred HHHHHHHHHHHHHH-----cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccH
Q 046258 256 FEERLKAVLKEVEE-----AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 256 ~~~~l~~~~~~~~~-----~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~ 328 (900)
..+...+..+.. ...+.||||||++.+.+. ..+.|..+++. ..+++|++++... ..++
T Consensus 83 --~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~~~~~~~~i~~~~~~~-----~~~~ 147 (226)
T 2chg_A 83 --DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------AQAALRRTMEMYSKSCRFILSCNYVS-----RIIE 147 (226)
T ss_dssp --HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------HHHHHHHHHHHTTTTEEEEEEESCGG-----GSCH
T ss_pred --HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------HHHHHHHHHHhcCCCCeEEEEeCChh-----hcCH
Confidence 112222222222 145788999999988542 23466666653 4678888886543 3678
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACA 400 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a 400 (900)
.+.+||..+.+..|+.++...+++..... .+..++++++..++..+.+ .|..+..+++.++.
T Consensus 148 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGG------DFRKAINALQGAAA 209 (226)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHHHH
T ss_pred HHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHh
Confidence 99999998889888999988888776654 4566889998888877633 45566666666553
No 95
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.56 E-value=1.4e-14 Score=158.72 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=140.5
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCe-EEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNP-VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRG 254 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~v-lL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g 254 (900)
.++++++|++..++.+...+......++ |++||||||||++|+++++.+ +.++++++++...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~~------- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDCK------- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTCC-------
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcccccC-------
Confidence 5788999999999999999987665565 555779999999999999998 7789999976521
Q ss_pred hHHHHHHHHHHHHHHc----CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccH
Q 046258 255 EFEERLKAVLKEVEEA----EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 255 ~~~~~l~~~~~~~~~~----~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~ 328 (900)
...++..+..+... +.+.||||||+|.+.+ .+..+.|+.+++. +.+++|++++... ..++
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~~~-----~l~~ 151 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANNID-----GIIK 151 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESSGG-----GSCT
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCCcc-----ccCH
Confidence 22344444433332 2467899999999861 2344577777764 5688888887654 3789
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHh---cccCcccCh-hHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYE---GHHGVRIQD-RALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~---~~~~v~i~~-eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
.+.+||..+.+..|+.+++..+++.+...+. ...++.+++ +++..++..+.+.+. .++..++.++
T Consensus 152 ~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R------~a~~~L~~~~ 220 (324)
T 3u61_B 152 PLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR------KTIGELDSYS 220 (324)
T ss_dssp THHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT------HHHHHHHHHG
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH------HHHHHHHHHh
Confidence 9999999899999999998887766555433 345678888 999999988755543 6888888776
No 96
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.55 E-value=6.8e-16 Score=164.39 Aligned_cols=163 Identities=23% Similarity=0.389 Sum_probs=113.0
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.+++++|.+..++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~ 78 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMGGS 78 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCCSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEechH
Confidence 467899999888887776541 345679999999999999999999988 4458888888
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCC-------hhhHHHhHhhhhh-----cCcEEEE
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEG-------SMDAANLFKPMLA-----RGQLRCI 312 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~-------~~~~~~~L~~~l~-----~g~irvI 312 (900)
.+... +.|.....++.++..+.... +.||||||+|.+......++ .....+.|+..+. .+.+.+|
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 155 (268)
T 2r62_A 79 SFIEM--FVGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVL 155 (268)
T ss_dssp TTTTS--CSSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEE
T ss_pred HHHHh--hcchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEE
Confidence 76542 23333333445555555443 67899999999986542211 1112334444443 2348899
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHH
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~ 357 (900)
++|+.... .++++.+ ||.. +.+..|+.+++.++++.+...
T Consensus 156 ~ttn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 156 AATNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp ECBSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred EecCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 99987653 6888988 8865 888999999999999766544
No 97
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=7.6e-15 Score=162.83 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=137.5
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC---CCCceeEecccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD---DENLLVRIDMSEYM 628 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~---~~~~~i~i~~~~~~ 628 (900)
+.+.....++|++.+++.+...+... ..| +++|+||||||||++|+++++.+.. ....++.+++++..
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------NLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------TCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------CCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 34444456788888887777766321 112 5999999999999999999999753 23457778876632
Q ss_pred cccccccccCC-CCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEc
Q 046258 629 EQHSVSRLIGA-PPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMT 707 (900)
Q Consensus 629 ~~~~~~~l~G~-~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~t 707 (900)
....+...+.. ....+.... ...........+.||+|||++.+++..++.|++.|++.. .+++||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~ 169 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPS-KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFCLI 169 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCC-TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEE
T ss_pred chHHHHHHHHHHhhhcccccc-hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEEEE
Confidence 11111110000 000000000 000000011245799999999999999999999999632 46778888
Q ss_pred cCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 046258 708 SNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVT 787 (900)
Q Consensus 708 sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~ 787 (900)
+|.. ..+.+.+.+|+ ..+.|.|++.+++..++...+. .. .+.++
T Consensus 170 ~~~~--------------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~-------~~--~~~i~ 213 (353)
T 1sxj_D 170 CNYV--------------------------TRIIDPLASQC-SKFRFKALDASNAIDRLRFISE-------QE--NVKCD 213 (353)
T ss_dssp ESCG--------------------------GGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHH-------TT--TCCCC
T ss_pred eCch--------------------------hhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHH-------Hh--CCCCC
Confidence 8763 44789999999 5899999999999988887765 23 35789
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 788 DAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 788 ~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
++++++|++..+ ++ .|.+.+.++...
T Consensus 214 ~~~l~~l~~~~~-G~--~r~~~~~l~~~~ 239 (353)
T 1sxj_D 214 DGVLERILDISA-GD--LRRGITLLQSAS 239 (353)
T ss_dssp HHHHHHHHHHTS-SC--HHHHHHHHHHTH
T ss_pred HHHHHHHHHHcC-CC--HHHHHHHHHHHH
Confidence 999999999876 44 888877776544
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2e-14 Score=154.30 Aligned_cols=168 Identities=10% Similarity=0.090 Sum_probs=116.1
Q ss_pred CCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh--------
Q 046258 181 VIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-------- 248 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------- 248 (900)
+.||++++.++...|.. ..+++++|+||||||||++++.+++.+.....-..+.+..++++||..+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 67899999999887764 577889999999999999999999998543211122267899999876421
Q ss_pred -----ccc-ccchHHHHHHHHHHHH-HHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhh-----hcCcEEEEEecC
Q 046258 249 -----GAK-YRGEFEERLKAVLKEV-EEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML-----ARGQLRCIGATT 316 (900)
Q Consensus 249 -----g~~-~~g~~~~~l~~~~~~~-~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l-----~~g~irvI~att 316 (900)
|.. ..+.....+...|..+ .....++|+||||+|.|. .|. .|.+++ +.+.+.+|+.+|
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~--------~L~~l~~~~~~~~s~~~vI~i~n 171 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEK--------ILQYFEKWISSKNSKLSIICVGG 171 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTH--------HHHHHHHHHHCSSCCEEEEEECC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cch--------HHHHHHhcccccCCcEEEEEEec
Confidence 221 1233445566666654 223457899999999997 222 444443 456788888885
Q ss_pred HHHHHHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHh
Q 046258 317 LEEYRKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYE 359 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~ 359 (900)
..+... ...++.+.+||. .|.+..++.++...|++.-...+.
T Consensus 172 ~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 172 HNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp SSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred Ccccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 432111 125677888985 488888899999999977766653
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.54 E-value=3.1e-13 Score=179.28 Aligned_cols=134 Identities=23% Similarity=0.305 Sum_probs=91.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC---CCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-------
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD---DENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR------- 659 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~---~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~------- 659 (900)
+++++||||+|||++.+.|++.+.. ....+..+|... .+..+|+|.-..-.+.=.-|.+...+|+.
T Consensus 925 gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~----~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~ 1000 (2695)
T 4akg_A 925 ALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKV----LTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGT 1000 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTT----SCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCC----CCHHHhcceecCCCCeEecChHHHHHHHHHhccccc
Confidence 5999999999999999999988642 222344555433 23356777521111111137788777741
Q ss_pred ---CCeEEEEccccccCHHHHHHHHHHhhCC-eeecCCCceeecC-CeEEEEccCCCcHHHhcccCCccchHHHHHHHHH
Q 046258 660 ---PYSVVLFDEVEKAHISVFNTLLQVLDDG-RLTDGQGRTVDFR-NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQ 734 (900)
Q Consensus 660 ---~~~vlllDEidk~~~~~~~~Ll~~ld~g-~~~d~~g~~~~~~-~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (900)
.+.+|+|| .-+++.+.+.|..+||+. .++-.+|..+... ++.+||-+..
T Consensus 1001 ~~~~~~WivfD--G~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~d------------------------ 1054 (2695)
T 4akg_A 1001 FKNSRIWVVFD--SDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDN------------------------ 1054 (2695)
T ss_dssp CSSEEEEEEEC--SCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESC------------------------
T ss_pred cCCCCeEEEEC--CCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecc------------------------
Confidence 14689999 778999999999999855 5676777777664 6677775532
Q ss_pred HHHhcccHHHHhcccceeecCC
Q 046258 735 EVRKHFRPELLNRLDEIVVFDP 756 (900)
Q Consensus 735 ~~~~~~~~~ll~R~~~~i~f~p 756 (900)
...-+|+..+|| -+|.+.|
T Consensus 1055 --L~~ASPATVSRc-Gmvy~~~ 1073 (2695)
T 4akg_A 1055 --LDHTTPATITRC-GLLWFST 1073 (2695)
T ss_dssp --CTTSCHHHHHHS-EEEECCS
T ss_pred --cccCCccceeee-eEEEecC
Confidence 244689999999 5666666
No 100
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.54 E-value=7.3e-14 Score=148.53 Aligned_cols=201 Identities=20% Similarity=0.261 Sum_probs=134.0
Q ss_pred CCCCCCCchHHHHHHHHHHc-------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 177 KLDPVIGRDEEIRRVVRILS-------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+++++.|.+...+.+.+.+. -..+.+++|+||||||||+++++||..+ +..++.++.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g 77 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKG 77 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEc
Confidence 45678888877777765432 1234559999999999999999999987 556999998
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC---CChhhHHHhHhhhhhc----CcEEEEEecC
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLAR----GQLRCIGATT 316 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~~----g~irvI~att 316 (900)
..+.. .+.|+.+..+..++..+.... ++++|+||++.+...... .......+.+...|.. ..+.++++|+
T Consensus 78 ~~l~~--~~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 78 PELLN--MYVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp TTTCS--STTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred HHHHh--hhhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 87754 457888888888888775544 789999999988654321 1112344555555543 3577888888
Q ss_pred HHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccC-hhHHHHHHHHhhhhccCCCChhhHH
Q 046258 317 LEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSARYITGRHLPDKAI 392 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~~~~~~~~~p~~a~ 392 (900)
+.+. +|+++.| ||+. |.++.|+..+|.+||+.+.... ...... +..+..++... .+..+.+++..
T Consensus 155 ~p~~-----LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~---~~~g~sgadl~ 223 (274)
T 2x8a_A 155 RPDI-----IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDL---RCDCYTGADLS 223 (274)
T ss_dssp CGGG-----SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCS---GGGSCCHHHHH
T ss_pred Chhh-----CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhh---ccCCcCHHHHH
Confidence 7765 7999998 9986 8899999999999998766431 111121 22233344322 12234556888
Q ss_pred HHHHHHHHH
Q 046258 393 DLVDEACAN 401 (900)
Q Consensus 393 ~Lld~a~a~ 401 (900)
.++.+|+..
T Consensus 224 ~l~~~a~~~ 232 (274)
T 2x8a_A 224 ALVREASIC 232 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877754
No 101
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=8.5e-14 Score=148.40 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=121.7
Q ss_pred CCCCCchHHHHHHHH-------HHc---cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh
Q 046258 179 DPVIGRDEEIRRVVR-------ILS---RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~-------~l~---~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
+.++|+++.++.++. .+. .....++||+||||||||++|+++|+.+ +.+|+.+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 468899988777766 232 3455689999999999999999999987 56699999987665
Q ss_pred cccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCC--CChhhHHHhHhhhhh-----cCcEEEEEecCHHHHH
Q 046258 249 GAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT--EGSMDAANLFKPMLA-----RGQLRCIGATTLEEYR 321 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~--~~~~~~~~~L~~~l~-----~g~irvI~att~~~~~ 321 (900)
|.. .+.....++.++..+.... +.+|||||++.|.+.... .......+.|...+. ...+++|++|+....
T Consensus 103 g~~-~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~- 179 (272)
T 1d2n_A 103 GFS-ETAKCQAMKKIFDDAYKSQ-LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV- 179 (272)
T ss_dssp TCC-HHHHHHHHHHHHHHHHTSS-EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH-
T ss_pred CCc-hHHHHHHHHHHHHHHHhcC-CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh-
Confidence 532 3444556677777665443 678999999999764432 123445566666554 235778888887653
Q ss_pred HHhhccH-HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhh
Q 046258 322 KYVEKDA-AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 322 ~~~~~d~-al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~ 381 (900)
.++ .+.+||.. .+..|+..++.++...+... ..++++.+..++..+.+|
T Consensus 180 ----l~~~~l~~rf~~-~i~~p~l~~r~~i~~i~~~~------~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 180 ----LQEMEMLNAFST-TIHVPNIATGEQLLEALELL------GNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ----HHHTTCTTTSSE-EEECCCEEEHHHHHHHHHHH------TCSCHHHHHHHHHHHTTS
T ss_pred ----cchhhhhcccce-EEcCCCccHHHHHHHHHHhc------CCCCHHHHHHHHHHhcCC
Confidence 344 56778864 23345555555555444432 236788888888888665
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=1.4e-13 Score=143.54 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=134.0
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc----
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH---- 631 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~---- 631 (900)
....++|++..++.+...+... ..| ..++|+||+|||||++|+.+++.+.... ......|.......
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~-------~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLG-------RIH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQ 91 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHT-------CCC-SEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHT
T ss_pred cHHHHhCcHHHHHHHHHHHHcC-------CCC-eEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhc
Confidence 3445888888888888888653 222 3699999999999999999999886522 22222222111000
Q ss_pred -ccccccCCCCCCcccccccchhHHHHh-------CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 632 -SVSRLIGAPPGYVGHEEGGQLTEAVRR-------RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 632 -~~~~l~G~~~g~~g~~~~~~l~~~~~~-------~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
....+++.... +......+...+.. ....||+|||++.+++..++.|++.+++. ..+++
T Consensus 92 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~ 158 (250)
T 1njg_A 92 GRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVK 158 (250)
T ss_dssp TCCSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEE
T ss_pred cCCcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceE
Confidence 00001100000 00001112233332 23589999999999999999999999862 25688
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
+|++||. ...+.+.+.+|+ ..+.|+|++.+++.+++...+.. .+
T Consensus 159 ~i~~t~~--------------------------~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-------~~-- 202 (250)
T 1njg_A 159 FLLATTD--------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH-- 202 (250)
T ss_dssp EEEEESC--------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------TT--
T ss_pred EEEEeCC--------------------------hHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-------cC--
Confidence 8998886 245678899998 88999999999999998887762 33
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
+.+++++++.|++.+ .++ .|.+.++++.+
T Consensus 203 ~~~~~~~~~~l~~~~-~G~--~~~~~~~~~~~ 231 (250)
T 1njg_A 203 IAHEPRALQLLARAA-EGS--LRDALSLTDQA 231 (250)
T ss_dssp CCBCHHHHHHHHHHH-TTC--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHH
Confidence 578999999999875 455 88888887655
No 103
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.52 E-value=2.7e-14 Score=163.00 Aligned_cols=198 Identities=23% Similarity=0.344 Sum_probs=136.2
Q ss_pred CCCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-+|++++|.+..+..+.+++.. ..+.+++|+||||||||++|++||..+ +..++.+++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~g 97 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASG 97 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEEG
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeh
Confidence 4578899999887777665432 124569999999999999999999987 445999999
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---Chh---hHHHhHhhhhhc----CcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSM---DAANLFKPMLAR----GQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~~---~~~~~L~~~l~~----g~irvI~ 313 (900)
+.+.. .+.|....+++.+|..+... .++|+|||||+.+....+.. +.. ...+.|+..|.. ..+.+|+
T Consensus 98 ~~~~~--~~~g~~~~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 98 SDFVE--MFVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174 (499)
T ss_dssp GGGTS--SCTTHHHHHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEE
T ss_pred hHHHH--hhhhhHHHHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEE
Confidence 88764 45677777777776654322 36789999999997654421 122 234455555542 3478888
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhH-HHHHHHHhhhhccCCCChh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRA-LVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~ea-l~~l~~~s~~~~~~~~~p~ 389 (900)
+|++... .|+++.+ ||.. |.++.|+..+|.+|++.+.. +..+++++ +..++..+.+| .+.
T Consensus 175 atn~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~-----~ga 238 (499)
T 2dhr_A 175 ATNRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGF-----VGA 238 (499)
T ss_dssp CCSCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSC-----CHH
T ss_pred ecCChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCC-----CHH
Confidence 8887753 7899988 7875 88899999999999875542 23344333 44455444333 335
Q ss_pred hHHHHHHHHHHHh
Q 046258 390 KAIDLVDEACANV 402 (900)
Q Consensus 390 ~a~~Lld~a~a~~ 402 (900)
+...++.+++...
T Consensus 239 dL~~lv~~Aa~~A 251 (499)
T 2dhr_A 239 DLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777787776543
No 104
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.51 E-value=2.1e-14 Score=154.45 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=97.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHH---HcCCCeE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVE---EAEGKVI 275 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~~~~i 275 (900)
.+..+||+||||||||++|+++|+.+ +.+|+.++|+.+.. .+.|+.+..++..+..+. ....++|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~v 102 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMCC 102 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCeE
Confidence 34568999999999999999999999 66799999999876 467888888888887763 2334788
Q ss_pred EEEcchhhhhhCCCCC-----ChhhHHHhHhhhhh---------------cCcEEEEEecCHHHHHHHhhccHHHHc--c
Q 046258 276 LFIDEIHLVLGAGRTE-----GSMDAANLFKPMLA---------------RGQLRCIGATTLEEYRKYVEKDAAFER--R 333 (900)
Q Consensus 276 L~iDEi~~l~~~~~~~-----~~~~~~~~L~~~l~---------------~g~irvI~att~~~~~~~~~~d~al~~--R 333 (900)
|||||||.+.+..... ....+.+.|+.+++ ...+.+|++||... ..+++|.+ |
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R 177 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGR 177 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHH
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCC
Confidence 9999999998743321 12245567777764 34688999998664 26788886 8
Q ss_pred cceeeecCCChHHHHHHHHHHHH
Q 046258 334 FQQVYVAEPSVPDTVSILRGLKE 356 (900)
Q Consensus 334 f~~i~i~~P~~~e~~~ilr~l~~ 356 (900)
|+.+. ..|+.+++.+|++.+..
T Consensus 178 ~d~~i-~~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 178 MEKFY-WAPTREDRIGVCTGIFR 199 (293)
T ss_dssp EEEEE-ECCCHHHHHHHHHHHHG
T ss_pred CceeE-eCcCHHHHHHHHHHhcc
Confidence 87533 26899999999985554
No 105
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.51 E-value=7.7e-14 Score=152.79 Aligned_cols=173 Identities=15% Similarity=0.238 Sum_probs=123.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||||||||++|+++++.+...+.+++.++|..+..... ..+.. .....+..... ..+||||||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~--------~~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMV-EHLKK--------GTINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-HHHHH--------TCHHHHHHHHH--TCSEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH-HHHHc--------CcHHHHHHHhc--CCCEEEEcC
Confidence 36999999999999999999999866566899999987643211 11100 00111222222 368999999
Q ss_pred ccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
|+.++. ..++.|+.+++... -.+..+|+|++.++..+ ..+.+.|++
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~l----------------------~~l~~~L~s 154 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQKL----------------------DGVSDRLVS 154 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGGC----------------------TTSCHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHHH----------------------HHhhhHhhh
Confidence 999886 67888888876311 12334666666554322 247899999
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 747 RLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 747 R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
||. .++.|+| +.+++..|+...+. .. .+.++++++++|+.+. ++ +|.+.++++.++..
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~~~~~-------~~--~~~l~~~~l~~l~~~~--g~--~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIKEKLK-------EF--NLELRKEVIDYLLENT--KN--VREIEGKIKLIKLK 214 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHHHHHH-------HT--TCCCCHHHHHHHHHHC--SS--HHHHHHHHHHHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHHHHHH-------hc--CCCCCHHHHHHHHHhC--CC--HHHHHHHHHHHHHc
Confidence 996 6789999 99999999988876 23 3589999999999886 56 99999999877654
No 106
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.51 E-value=2.8e-13 Score=151.35 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=136.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc--
Q 046258 556 EKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV-- 633 (900)
Q Consensus 556 ~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~-- 633 (900)
....++|++..++.+...+... ..| ..++|+||+|||||++|+.+++.+.... ......|.....-...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~-------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG-------RIH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQ 84 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT-------CCC-SEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHT
T ss_pred chhhccCcHHHHHHHHHHHHhC-------CCC-eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhc
Confidence 3445889999999998888653 222 2589999999999999999999986532 2222223221110000
Q ss_pred ---ccccCC-CCCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEE
Q 046258 634 ---SRLIGA-PPGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVII 705 (900)
Q Consensus 634 ---~~l~G~-~~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI 705 (900)
..++.. ..+..+......+.+.+.. ..+.||+|||++.++...++.|+..+++ ...+++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~I 153 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFL 153 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEE
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEE
Confidence 000000 0011111111222222222 2357999999999999999999999986 23578888
Q ss_pred EccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 046258 706 MTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALA 785 (900)
Q Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~ 785 (900)
++||. ...+.+.+.+|+ ..+.|.|++.+++..++...+.+ .| +.
T Consensus 154 l~~~~--------------------------~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~--~~ 197 (373)
T 1jr3_A 154 LATTD--------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IA 197 (373)
T ss_dssp EEESC--------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CC
T ss_pred EEeCC--------------------------hHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CC
Confidence 88875 345788999999 89999999999999998887762 23 47
Q ss_pred cCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 786 VTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 786 ~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+++++++.|++.. .++ .|.+.+.+++.+
T Consensus 198 ~~~~a~~~l~~~~-~G~--~r~~~~~l~~~~ 225 (373)
T 1jr3_A 198 HEPRALQLLARAA-EGS--LRDALSLTDQAI 225 (373)
T ss_dssp BCHHHHHHHHHHS-SSC--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC-CCC--HHHHHHHHHHHH
Confidence 8999999999775 444 788888876653
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=8.3e-14 Score=156.35 Aligned_cols=208 Identities=22% Similarity=0.194 Sum_probs=144.6
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC--------CCceeEecccccc-c
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD--------ENLLVRIDMSEYM-E 629 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~--------~~~~i~i~~~~~~-~ 629 (900)
.++|++..++.+...+..+..+ ..| .+++|+||||||||++|+.+++.+... ..+++.++|.... .
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~----~~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKN----EVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTT----CCC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCChHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 4788888899999888776443 223 379999999999999999999987432 5589999988654 2
Q ss_pred ccc-----cccccCCCCCCcccccccchhH---HHHhCCCeEEEEccccccCHH-HHHH-HHHHhhCCeeecCCCceeec
Q 046258 630 QHS-----VSRLIGAPPGYVGHEEGGQLTE---AVRRRPYSVVLFDEVEKAHIS-VFNT-LLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 630 ~~~-----~~~l~G~~~g~~g~~~~~~l~~---~~~~~~~~vlllDEidk~~~~-~~~~-Ll~~ld~g~~~d~~g~~~~~ 699 (900)
... ...+.|.+.++.|......+.. .+.. ..+||+|||++.+... .++. |..+++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~------------ 162 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD------------ 162 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSS------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCC------------
Confidence 211 2344566555555443332222 2222 2349999999998654 2455 55555431
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAE 779 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~ 779 (900)
.++.||+|||...- ...+.+.+.+||...+.|+||+.+++.+|+...+... -
T Consensus 163 ~~~~iI~~t~~~~~-----------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~-----~ 214 (384)
T 2qby_B 163 ANISVIMISNDINV-----------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG-----L 214 (384)
T ss_dssp SCEEEEEECSSTTT-----------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT-----S
T ss_pred cceEEEEEECCCch-----------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh-----c
Confidence 57889999986420 2457899999997899999999999999999887620 0
Q ss_pred cCCccccCHHHHHHHHHcCC--CCCCCchHHHHHHHHHH
Q 046258 780 RGVALAVTDAALDIVLAESY--DPIYGARPIRRWLEKKV 816 (900)
Q Consensus 780 ~~~~~~~~~~a~~~l~~~~~--~~~~g~R~L~~~i~~~i 816 (900)
. ...+++++++.+++.++ +++ +|.+.++++.++
T Consensus 215 ~--~~~~~~~~~~~i~~~~~~~~G~--~r~a~~~l~~a~ 249 (384)
T 2qby_B 215 I--KGTYDDEILSYIAAISAKEHGD--ARKAVNLLFRAA 249 (384)
T ss_dssp C--TTSCCSHHHHHHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred c--cCCcCHHHHHHHHHHHHhccCC--HHHHHHHHHHHH
Confidence 1 25789999999988765 344 777777665543
No 108
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.51 E-value=1.3e-14 Score=138.98 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE 257 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~ 257 (900)
.++|+++.++++++.+.+ ....|++|+||||||||++|++||+...+.+.| |+ ++|+.+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~-------~v-~~~~~~~~~~~------ 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE-------FV-YRELTPDNAPQ------ 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC-------CE-EEECCTTTSSC------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC-------EE-EECCCCCcchh------
Confidence 479999999999998865 567799999999999999999999987665555 88 99998765421
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh--cCcEEEEEecCHHHHHHH--hhccHHHHcc
Q 046258 258 ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA--RGQLRCIGATTLEEYRKY--VEKDAAFERR 333 (900)
Q Consensus 258 ~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~g~irvI~att~~~~~~~--~~~d~al~~R 333 (900)
. .+.+..+.+++ |||||++.+....|. .|..++. ...+++|++||.+..... -...+.|..|
T Consensus 68 --~---~~~~~~a~~g~-l~ldei~~l~~~~q~--------~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 68 --L---NDFIALAQGGT-LVLSHPEHLTREQQY--------HLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp --H---HHHHHHHTTSC-EEEECGGGSCHHHHH--------HHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred --h---hcHHHHcCCcE-EEEcChHHCCHHHHH--------HHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 1 22233345455 999999998664333 6666664 335899999986543221 1235677778
Q ss_pred cceeeecCCCh
Q 046258 334 FQQVYVAEPSV 344 (900)
Q Consensus 334 f~~i~i~~P~~ 344 (900)
+..+.+..|+.
T Consensus 134 l~~~~i~lPpL 144 (145)
T 3n70_A 134 FAMTQIACLPL 144 (145)
T ss_dssp HHHHEEECCCC
T ss_pred hcCCEEeCCCC
Confidence 87777766653
No 109
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.50 E-value=1.9e-13 Score=152.16 Aligned_cols=186 Identities=24% Similarity=0.338 Sum_probs=124.1
Q ss_pred CCCchHHHHHHHHHHc-------------c--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 181 VIGRDEEIRRVVRILS-------------R--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~-------------~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
++|++..++.+...+. + ..+.++||+||||||||++|++||+.+ +.+|+.++|+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 7999999999988773 1 256789999999999999999999998 56699999998
Q ss_pred hhhcccccchH-HHHHHHHHHHH----HHcCCCeEEEEcchhhhhhCCCCCC-h-----hhHHHhHhhhhhcC-------
Q 046258 246 LVAGAKYRGEF-EERLKAVLKEV----EEAEGKVILFIDEIHLVLGAGRTEG-S-----MDAANLFKPMLARG------- 307 (900)
Q Consensus 246 l~~g~~~~g~~-~~~l~~~~~~~----~~~~~~~iL~iDEi~~l~~~~~~~~-~-----~~~~~~L~~~l~~g------- 307 (900)
+... .|.|.. ...+..++... ..+. ++||||||++.+.+.....+ . ..+.+.|+++|+..
T Consensus 87 l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~ 164 (363)
T 3hws_A 87 LTEA-GYVGEDVENIIQKLLQKCDYDVQKAQ-RGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164 (363)
T ss_dssp HTTC-HHHHHHHTHHHHHHHHHTTTCHHHHH-HCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------
T ss_pred hccc-ccccccHHHHHHHHHHHhhhhHHhcC-CcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCc
Confidence 7532 234443 33444554432 2233 56799999999987643311 1 12678888888721
Q ss_pred ----------------cEEEEEecCHHHHHHH----------------------------------------hhccHHHH
Q 046258 308 ----------------QLRCIGATTLEEYRKY----------------------------------------VEKDAAFE 331 (900)
Q Consensus 308 ----------------~irvI~att~~~~~~~----------------------------------------~~~d~al~ 331 (900)
++.+|++++...+... ....|.|.
T Consensus 165 ~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~ 244 (363)
T 3hws_A 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 244 (363)
T ss_dssp ---------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHH
T ss_pred cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh
Confidence 1233344332111110 01478999
Q ss_pred cccceee-ecCCChHHHHHHHHH----HHHHHhcc-----cCcccChhHHHHHHHHh
Q 046258 332 RRFQQVY-VAEPSVPDTVSILRG----LKEKYEGH-----HGVRIQDRALVVAAQLS 378 (900)
Q Consensus 332 ~Rf~~i~-i~~P~~~e~~~ilr~----l~~~~~~~-----~~v~i~~eal~~l~~~s 378 (900)
+||..+. +..|+.+++..|++. +..+|... ..+.++++++..++..+
T Consensus 245 ~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 245 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred cccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 9999855 567788888888875 55555432 22458999999998754
No 110
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.50 E-value=2e-13 Score=148.56 Aligned_cols=181 Identities=22% Similarity=0.281 Sum_probs=123.6
Q ss_pred CCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 180 PVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
.++|++..++.+...+.+. +..+++|+||||||||++|++||+.+.....| ++.++|+.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~-------~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA-------MIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGG-------EEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcc-------eEEeecccccccc
Confidence 4889999999998877652 12479999999999999999999998665444 9999998763211
Q ss_pred c----------ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------
Q 046258 251 K----------YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------------- 307 (900)
Q Consensus 251 ~----------~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 307 (900)
. +.|... ...+...+.... +.||||||++.+.+ +..+.|+++++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~-~~vl~lDEi~~l~~--------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRP-YSVILFDAIEKAHP--------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTT--CCHHHHHHHHCS-SEEEEEETGGGSCH--------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccc--cchHHHHHHhCC-CeEEEEeChhhcCH--------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 0 001000 011222333333 57899999998854 3455888888754
Q ss_pred cEEEEEecCHH---------------HHHH------HhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcc----
Q 046258 308 QLRCIGATTLE---------------EYRK------YVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGH---- 361 (900)
Q Consensus 308 ~irvI~att~~---------------~~~~------~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~---- 361 (900)
.+.+|++||.. .... .-..++.|.+||.. +.+.+|+.+++..|++.+..++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 34488888872 1111 11357899999965 6667788888888888776665432
Q ss_pred -cCcccChhHHHHHHHHh
Q 046258 362 -HGVRIQDRALVVAAQLS 378 (900)
Q Consensus 362 -~~v~i~~eal~~l~~~s 378 (900)
..+.++++++..+....
T Consensus 240 ~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERG 257 (311)
T ss_dssp TCEEEECHHHHHHHHHHS
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 23568999999988865
No 111
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.50 E-value=2.6e-13 Score=143.08 Aligned_cols=197 Identities=23% Similarity=0.340 Sum_probs=129.9
Q ss_pred CCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 177 KLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
++++++|.+.....+.++... ..+.+++|+||||||||+++++|+..+ +..++.+++.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~~~ 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGS 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeeHH
Confidence 466789988776666554321 224459999999999999999999987 3448899887
Q ss_pred hhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---Ch---hhHHHhHhhhhhc----CcEEEEEe
Q 046258 245 ALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GS---MDAANLFKPMLAR----GQLRCIGA 314 (900)
Q Consensus 245 ~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~~----g~irvI~a 314 (900)
.+.. .+.+.....+..++..+... .++++|+||++.+....... .. ....+.+...+.. ..+.++++
T Consensus 84 ~~~~--~~~~~~~~~i~~~~~~~~~~-~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 84 DFVE--MFVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHH--SCTTHHHHHHHHHHHHHTTS-SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHHH--HHhhHHHHHHHHHHHHHHhc-CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 7654 33566666677777765433 36889999999987654321 11 1233444444443 23677777
Q ss_pred cCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhH-HHHHHHHhhhhccCCCChhh
Q 046258 315 TTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRA-LVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 315 tt~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~ea-l~~l~~~s~~~~~~~~~p~~ 390 (900)
++.... .|+++.+ ||.. +.++.|+.++|.+|++.+... ..+++++ +..++..+.+| .+.+
T Consensus 161 t~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~-----~~~d 224 (254)
T 1ixz_A 161 TNRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGF-----VGAD 224 (254)
T ss_dssp ESCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC-----CHHH
T ss_pred cCCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC------CCCCcccCHHHHHHHcCCC-----CHHH
Confidence 776653 7899998 8875 788999999999999765532 2333333 55666655444 3346
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
...++..++...
T Consensus 225 l~~~~~~a~~~a 236 (254)
T 1ixz_A 225 LENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 112
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.6e-14 Score=169.78 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=123.5
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeE-ecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVR-IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~-i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
.++||+||||||||+||+++|+.+.+....+.. .+++++..........|. . ..-.+.+..+.++|+|||
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~----~-----~~~~G~l~~A~~gil~ID 398 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGE----Y-----YLEAGALVLADGGIAVID 398 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSS----C-----SEEECHHHHHSSSEECCT
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccc----c-----cccCCeeEecCCCcEEee
Confidence 379999999999999999999888542111100 222332221111111110 0 111223344467999999
Q ss_pred cccccCHHHHHHHHHHhhCCeeec-CCCceeec-CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAHISVFNTLLQVLDDGRLTD-GQGRTVDF-RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~~~~~~~Ll~~ld~g~~~d-~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
||+++++++++.|+++|+++.++- ..|....+ .+++||+|||.......... .... .-.++++|+
T Consensus 399 Eid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~-~~~~------------ni~l~~aLl 465 (595)
T 3f9v_A 399 EIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER-PVSD------------NINLPPTIL 465 (595)
T ss_dssp TTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS-CSCT------------TTCSCSSSG
T ss_pred hhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc-Cchh------------ccCCCHHHH
Confidence 999999999999999999998873 33443333 57899999998521110000 0000 116899999
Q ss_pred hcccceeecCCCCHHHHHHHHHHHHHH-----------------HHHHHHhcCCccccCHHHHHHHHHc-----------
Q 046258 746 NRLDEIVVFDPLSHEQLRKVARLQMKD-----------------VAIRLAERGVALAVTDAALDIVLAE----------- 797 (900)
Q Consensus 746 ~R~~~~i~f~pl~~e~~~~I~~~~l~~-----------------~~~~~~~~~~~~~~~~~a~~~l~~~----------- 797 (900)
+|||.++.+.++..++...|+++.+.. +.... ...+...+++++.+.|.++
T Consensus 466 ~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a-r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~ 544 (595)
T 3f9v_A 466 SRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYA-RKYVTPKITSEAKNLITDFFVEMRKKSSET 544 (595)
T ss_dssp GGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH-HHHHCCCCCCCTHHHHHHHHTTSSCSCCBC
T ss_pred hhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 999988888776664466666665431 11111 1112347888888888876
Q ss_pred ---CCCCCCCchHHHHHHHH
Q 046258 798 ---SYDPIYGARPIRRWLEK 814 (900)
Q Consensus 798 ---~~~~~~g~R~L~~~i~~ 814 (900)
.|+ .++|.++++++-
T Consensus 545 ~~~~~~--~s~R~l~~lirl 562 (595)
T 3f9v_A 545 PDSPIL--ITPRQLEALIRI 562 (595)
T ss_dssp SSSCBC--SSTTTTTHHHHH
T ss_pred CCcccc--ccHHHHHHHHHH
Confidence 243 449999999853
No 113
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.49 E-value=8.1e-15 Score=155.99 Aligned_cols=169 Identities=22% Similarity=0.351 Sum_probs=112.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
++||+||||||||++|+++|..+.. +++.++|+.+... +.|.. .. ....+.........+||||||+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~---~~~~v~~~~~~~~-----~~~~~----~~-~~~~~~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHV---PFFSMGGSSFIEM-----FVGLG----AS-RVRDLFETAKKQAPSIIFIDEI 112 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTC---CCCCCCSCTTTTS-----CSSSC----SS-SSSTTHHHHHHSCSCEEEESCG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC---CEEEechHHHHHh-----hcchH----HH-HHHHHHHHHHhcCCeEEEEeCh
Confidence 5999999999999999999999854 8999999876432 22221 11 1123444444556689999999
Q ss_pred cccCHH---------------HHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHH
Q 046258 670 EKAHIS---------------VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQ 734 (900)
Q Consensus 670 dk~~~~---------------~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (900)
|.+... .++.|+..++.-. ....++++|+|||..
T Consensus 113 d~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~----------------------- 161 (268)
T 2r62_A 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG--------SENAPVIVLAATNRP----------------------- 161 (268)
T ss_dssp GGTTC----------CCCSCSSTTTTTTTTTCSS--------CSCSCCEEEECBSCC-----------------------
T ss_pred hhhcccccccccCCCchhHHHHHHHHHHHhhCcc--------cCCCCEEEEEecCCc-----------------------
Confidence 998654 3455666665310 122458899999984
Q ss_pred HHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 735 EVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 735 ~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
..+++++++ ||+..+.|.+++.++..+|++.++.. .++. ++..++.|+... ..+..|+|++++
T Consensus 162 ---~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~-------~~~~---~~~~~~~la~~~--~g~~g~dl~~l~ 226 (268)
T 2r62_A 162 ---EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG-------VKLA---NDVNLQEVAKLT--AGLAGADLANII 226 (268)
T ss_dssp ---TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS-------SCCC---SSCCTTTTTSSS--CSSCHHHHHHHH
T ss_pred ---hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc-------CCCC---CccCHHHHHHHc--CCCCHHHHHHHH
Confidence 346788887 99999999999999999998776651 1111 111233444332 223358888888
Q ss_pred HHHHH
Q 046258 813 EKKVV 817 (900)
Q Consensus 813 ~~~i~ 817 (900)
+++..
T Consensus 227 ~~a~~ 231 (268)
T 2r62_A 227 NEAAL 231 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=9.5e-14 Score=151.83 Aligned_cols=189 Identities=16% Similarity=0.222 Sum_probs=136.1
Q ss_pred ChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCC--CceeEecccccccc
Q 046258 553 GQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDE--NLLVRIDMSEYMEQ 630 (900)
Q Consensus 553 ~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~--~~~i~i~~~~~~~~ 630 (900)
.+.....++|++..++.+...+... ..| +++|+||+|+|||++|+.+++.+.+.. ..++.++++.....
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~-------~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDG-------NMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC-------CCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcC-------CCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 3334455788888888888877532 223 499999999999999999999975422 24667776542111
Q ss_pred cccccccCCCCCCcccccccchhHHHH-------hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTEAVR-------RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~~~~-------~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
..+ ..+...+. ..++.||+|||++.++...++.|++.+++. ..+++
T Consensus 87 ~~i----------------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~ 139 (323)
T 1sxj_B 87 DVV----------------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-----------SNSTR 139 (323)
T ss_dssp HHH----------------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-----------TTTEE
T ss_pred HHH----------------HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-----------CCCce
Confidence 100 11111111 223689999999999999999999999862 25678
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
||++||. ...+.+.+.+|+ ..+.|.|++.+++.+++...+.. .|
T Consensus 140 ~il~~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~-- 183 (323)
T 1sxj_B 140 FAFACNQ--------------------------SNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL-------ED-- 183 (323)
T ss_dssp EEEEESC--------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--
T ss_pred EEEEeCC--------------------------hhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH-------cC--
Confidence 8888876 345789999999 69999999999999998887752 23
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+.+++++++.|++.+ .++ .|.+.+.++...
T Consensus 184 ~~~~~~~~~~l~~~~-~G~--~r~a~~~l~~~~ 213 (323)
T 1sxj_B 184 VKYTNDGLEAIIFTA-EGD--MRQAINNLQSTV 213 (323)
T ss_dssp CCBCHHHHHHHHHHH-TTC--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CCC--HHHHHHHHHHHH
Confidence 468999999999764 444 777777776554
No 115
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.49 E-value=2.2e-13 Score=151.98 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=132.4
Q ss_pred CCCCCCCchHHHHHH---HHHHccCC--CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc-
Q 046258 177 KLDPVIGRDEEIRRV---VRILSRRT--KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA- 250 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l---~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~- 250 (900)
.+++++|++..++.+ ...+.... +.++||+||||||||++|+++|+.+. ... +++.+++..+....
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-~~~-------~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG-PDT-------PFTAIAGSEIFSLEM 113 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC-SSC-------CEEEEEGGGGSCSSS
T ss_pred chhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc-ccC-------Ccccccchhhhhccc
Confidence 378899999887664 44444433 35899999999999999999999983 222 48888876532100
Q ss_pred ----------------------------------------------cccchHHHHHHHHHHHHHH----cCC----CeEE
Q 046258 251 ----------------------------------------------KYRGEFEERLKAVLKEVEE----AEG----KVIL 276 (900)
Q Consensus 251 ----------------------------------------------~~~g~~~~~l~~~~~~~~~----~~~----~~iL 276 (900)
.+.|.+...++..+..+.. .+. +.||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 1123333444444443322 121 3589
Q ss_pred EEcchhhhhhCCCCCChhhHHHhHhhhhhcCc--EEEEEe---------cCHHHHHHHhhccHHHHcccceeeecCCChH
Q 046258 277 FIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ--LRCIGA---------TTLEEYRKYVEKDAAFERRFQQVYVAEPSVP 345 (900)
Q Consensus 277 ~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~--irvI~a---------tt~~~~~~~~~~d~al~~Rf~~i~i~~P~~~ 345 (900)
||||+|.+.. +..+.|+..++... +.++++ ++.+. ....++.|.+||..+.++.|+.+
T Consensus 194 ~IDEi~~l~~--------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~~l~sR~~~i~~~~~~~~ 262 (368)
T 3uk6_A 194 FIDEVHMLDI--------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPIDLLDRLLIVSTTPYSEK 262 (368)
T ss_dssp EEESGGGSBH--------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCHHHHTTEEEEEECCCCHH
T ss_pred EEhhccccCh--------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCHHHHhhccEEEecCCCHH
Confidence 9999998853 34557777776442 322232 22111 12468999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhh
Q 046258 346 DTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVR 403 (900)
Q Consensus 346 e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~ 403 (900)
++.++++..... .++.++++++..++..+.. ..+..+..+++.++....
T Consensus 263 e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 263 DTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCR 311 (368)
T ss_dssp HHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Confidence 999999876665 4677999999999998852 345688889988876553
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.7e-13 Score=149.98 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=135.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..+++++|++..++.+...+......+++|+||||||||++|+.+++.+..... ...++.++++..... ..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-----~~~~~~~~~~~~~~~----~~ 92 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW-----RHNFLELNASDERGI----NV 92 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-----HHHEEEEETTCHHHH----HT
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCceEEeeccccCch----HH
Confidence 467889999999999999998877778999999999999999999998743210 234788887654221 11
Q ss_pred HHHHHHHHHHHHH-HcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccHHHHc
Q 046258 256 FEERLKAVLKEVE-EAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDAAFER 332 (900)
Q Consensus 256 ~~~~l~~~~~~~~-~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~al~~ 332 (900)
+...+........ ...++.|+||||+|.+... ..+.|..+++. ..+++|++++... ...+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------~~~~L~~~le~~~~~~~~i~~~~~~~-----~l~~~l~s 159 (327)
T 1iqp_A 93 IREKVKEFARTKPIGGASFKIIFLDEADALTQD--------AQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQS 159 (327)
T ss_dssp THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH--------HHHHHHHHHHHTTTTEEEEEEESCGG-----GSCHHHHH
T ss_pred HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH--------HHHHHHHHHHhcCCCCeEEEEeCCcc-----ccCHHHHh
Confidence 1111211111000 1134678999999998542 34577777764 4678888886543 26788999
Q ss_pred ccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 333 RFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 333 Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
|+..+.+..++.++...+++..... .++.++++++..++..+.+ .+..+..+++.++
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEG------DMRRAINILQAAA 216 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCC------CHHHHHHHHHHHH
Confidence 9998888888888888887766654 5677999999999888743 3446767776544
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=2.2e-13 Score=152.77 Aligned_cols=213 Identities=20% Similarity=0.253 Sum_probs=140.6
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc-----
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG----- 249 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g----- 249 (900)
+.++|++.+++.+...+.+ ....+++|+||||||||++++.+++.+....... -.+..++.+||......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSL-GVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH-TCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc-CCCeEEEEEECCcCCCHHHHHH
Confidence 5699999999999998854 4567899999999999999999999874420000 00456999998753210
Q ss_pred ---------ccccch-HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh----cCcEEEEEec
Q 046258 250 ---------AKYRGE-FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA----RGQLRCIGAT 315 (900)
Q Consensus 250 ---------~~~~g~-~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~g~irvI~at 315 (900)
....|. ....+..+...+...+.++||||||+|.+.... ...+....+...+. ...+.+|++|
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 001121 223344444444444557899999999997652 12233333444443 5678999999
Q ss_pred CHHHHHHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+..+... ..++.+.+||. .+.++.|+.++...+++..... ...+..++++++..++..+.+. ...|..+..
T Consensus 175 ~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~ 247 (387)
T 2v1u_A 175 NSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE--AFNPGVLDPDVVPLCAALAARE---HGDARRALD 247 (387)
T ss_dssp SCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH--HBCTTTBCSSHHHHHHHHHHSS---SCCHHHHHH
T ss_pred CCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh--hccCCCCCHHHHHHHHHHHHHh---ccCHHHHHH
Confidence 7664321 35889999994 5778888999999998776653 1235668899999988888522 234667788
Q ss_pred HHHHHHHHh
Q 046258 394 LVDEACANV 402 (900)
Q Consensus 394 Lld~a~a~~ 402 (900)
++..++...
T Consensus 248 ~l~~a~~~a 256 (387)
T 2v1u_A 248 LLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=5.7e-13 Score=149.65 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=149.9
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEeccccccccccc----
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRIDMSEYMEQHSV---- 633 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~---- 633 (900)
.++|++..++.+...+.....+-. ..+ .+++|+||||||||++++.++..+... ..+++.++|+........
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~--~~~-~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPG--HHY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTT--SSC-CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCC--CCC-CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 377888888888888877654311 111 169999999999999999999999765 468899998875432111
Q ss_pred ccccCCCCCCccccccc---chhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccC
Q 046258 634 SRLIGAPPGYVGHEEGG---QLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 709 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~~---~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn 709 (900)
...+|.+....|..... .+...+.. ....||+|||++.++++.+..|+.++++..- ....++.||++||
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~-------~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK-------LGAFRIALVIVGH 167 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH-------HSSCCEEEEEEES
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC-------CCcCCEEEEEEEC
Confidence 12234322222221111 12223333 3467999999999999999999999975210 0013678888888
Q ss_pred CCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Q 046258 710 LGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTD 788 (900)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 788 (900)
... +...+.+.+.+||.. .+.|+||+.+++..++...+.... ....+++
T Consensus 168 ~~~-----------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-------~~~~~~~ 217 (389)
T 1fnn_A 168 NDA-----------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-------AEGSYSE 217 (389)
T ss_dssp STH-----------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-------CTTSSCH
T ss_pred Cch-----------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-------CCCCCCH
Confidence 642 134578899999965 899999999999999988776211 1247899
Q ss_pred HHHHHHHHcCC--------CCCCCchHHHHHHHHHHH
Q 046258 789 AALDIVLAESY--------DPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 789 ~a~~~l~~~~~--------~~~~g~R~L~~~i~~~i~ 817 (900)
++++.+.+..| +++ .|.+.++++.++.
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~--~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGD--ARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCc--HHHHHHHHHHHHH
Confidence 99999998876 444 8888888876654
No 119
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.48 E-value=7.6e-14 Score=156.08 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=137.6
Q ss_pred CCCCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--------h
Q 046258 178 LDPVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL--------V 247 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l--------~ 247 (900)
+..++|.++.++++.+.+.+ ....+++|+|++|||||++|+.||....+...| |+.+||+++ +
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~-------fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEP-------FVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSC-------EEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCC-------eEEEecCCCCHHHHHHHh
Confidence 45689999999999888776 566789999999999999999999988666555 999999876 3
Q ss_pred hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEe
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGA 314 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~a 314 (900)
+|+. +|.|++......+.++.+++|+ ||||||+.|....|. .|+++++.+ .+|+|++
T Consensus 209 fg~~-~g~~tga~~~~~g~~~~a~~gt-lfldei~~l~~~~q~--------~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 278 (387)
T 1ny5_A 209 FGYE-KGAFTGAVSSKEGFFELADGGT-LFLDEIGELSLEAQA--------KLLRVIESGKFYRLGGRKEIEVNVRILAA 278 (387)
T ss_dssp HCBC-TTSSTTCCSCBCCHHHHTTTSE-EEEESGGGCCHHHHH--------HHHHHHHHSEECCBTCCSBEECCCEEEEE
T ss_pred cCCC-CCCCCCcccccCCceeeCCCcE-EEEcChhhCCHHHHH--------HHHHHHhcCcEEeCCCCceeeccEEEEEe
Confidence 4544 4555444333334556677677 999999999765554 888888754 4789999
Q ss_pred cCHHHHHHHh--hccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHhhhhccCC
Q 046258 315 TTLEEYRKYV--EKDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLSARYITGR 385 (900)
Q Consensus 315 tt~~~~~~~~--~~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~~ 385 (900)
|+.+...... .-.+.|..|+.++.+..|+..+|.+ +++.+..++...++ ..++++++..+..+.
T Consensus 279 t~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~------- 351 (387)
T 1ny5_A 279 TNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP------- 351 (387)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC-------
T ss_pred CCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC-------
Confidence 9865432221 1245566688888888898887765 34555555543333 348899998888765
Q ss_pred CChhhHHHHHH
Q 046258 386 HLPDKAIDLVD 396 (900)
Q Consensus 386 ~~p~~a~~Lld 396 (900)
+|.+...|-.
T Consensus 352 -wpGNvreL~~ 361 (387)
T 1ny5_A 352 -WYGNVRELKN 361 (387)
T ss_dssp -CTTHHHHHHH
T ss_pred -CCcHHHHHHH
Confidence 5656554433
No 120
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.47 E-value=9.8e-14 Score=151.41 Aligned_cols=191 Identities=21% Similarity=0.260 Sum_probs=135.7
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchH
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEF 256 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~ 256 (900)
.+++++|++..++.+...+......+++|+||||||||++|+.+++.+..... +..++.++++..... ...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~~~----~~~ 85 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-----RDNFIEMNASDERGI----DVV 85 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-----HHHCEEEETTSTTCT----TTS
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-----cCCeEEEeCccccCh----HHH
Confidence 46679999999999999888877678999999999999999999998743221 334788888764321 111
Q ss_pred HHHHHHHHHHHHH-cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 257 EERLKAVLKEVEE-AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 257 ~~~l~~~~~~~~~-~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~al~~R 333 (900)
...+......... ...+.|+||||+|.+.. +..+.|..+++. ..+++|++++... ...+.+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~-----~l~~~l~sr 152 (319)
T 2chq_A 86 RHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS-----RIIEPIQSR 152 (319)
T ss_dssp SHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------HHHHTTGGGTSSSSSSEEEEEEESCGG-----GSCHHHHTT
T ss_pred HHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh-----hcchHHHhh
Confidence 1112211100000 13367899999999854 344578888875 5688888886543 368999999
Q ss_pred cceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 334 FQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 334 f~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
+..+.+..|+.++...+++....+ .++.++++++..++..+.+. +..+..+++.++
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~~ 208 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTC------HHHHHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 998999999998888888776654 56779999999888776433 345666665544
No 121
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.47 E-value=6.7e-14 Score=159.80 Aligned_cols=196 Identities=20% Similarity=0.341 Sum_probs=131.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHhcC--CCC--CCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccc
Q 046258 558 ERLIGLAEAVNAVAESVLRSRAG--LGR--PQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSV 633 (900)
Q Consensus 558 ~~l~g~~~av~~l~~~i~~~~~g--~~~--~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~ 633 (900)
+.++|+++++..+.+.+...... +.. ..-|. .++|+||||||||+||++||..+. .+++.++++++.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEM--- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHh---
Confidence 34778887777777766543211 000 11233 499999999999999999999884 58999999876532
Q ss_pred ccccCCCCCCcccccccchhHHHHh---CCCeEEEEccccccCH--------------HHHHHHHHHhhCCeeecCCCce
Q 046258 634 SRLIGAPPGYVGHEEGGQLTEAVRR---RPYSVVLFDEVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRT 696 (900)
Q Consensus 634 ~~l~G~~~g~~g~~~~~~l~~~~~~---~~~~vlllDEidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~ 696 (900)
|+|... ..+...+.. ...+++||||||.+.. ..++.|+..|+.+.
T Consensus 104 ---------~~g~~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-------- 165 (499)
T 2dhr_A 104 ---------FVGVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-------- 165 (499)
T ss_dssp ---------CTTHHH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------
T ss_pred ---------hhhhHH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------
Confidence 222111 112222222 2348999999997642 35577777777543
Q ss_pred eecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 697 VDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 697 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
.-..+++|++||.+ ..++++|++ ||+..+.+.+++.++..+|++.++.
T Consensus 166 -~~~~viviAatn~p--------------------------~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--- 215 (499)
T 2dhr_A 166 -KDTAIVVMAATNRP--------------------------DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--- 215 (499)
T ss_dssp -SSCCCEEEECCSCG--------------------------GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS---
T ss_pred -cCccEEEEEecCCh--------------------------hhcCcccccccccceEEecCCCCHHHHHHHHHHHHh---
Confidence 12457888899874 337788886 8999999999999999999876543
Q ss_pred HHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHHHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRRWLEKKVVT 818 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~~i~~~i~~ 818 (900)
.+.+++++ +..|+ +.|+++ ..|+|+++++++...
T Consensus 216 --------~~~l~~dv~l~~lA-~~t~G~-~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 216 --------GKPLAEDVDLALLA-KRTPGF-VGADLENLLNEAALL 250 (499)
T ss_dssp --------SSCCCCSSTTHHHH-TTSCSC-CHHHHHHHHHHHHHH
T ss_pred --------cCCCChHHHHHHHH-HhcCCC-CHHHHHHHHHHHHHH
Confidence 23455555 45554 668776 238999999876554
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.47 E-value=7.7e-13 Score=141.44 Aligned_cols=198 Identities=23% Similarity=0.332 Sum_probs=130.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
-++++++|.+..+..+.++... ..+.+++|+||||||||+++++|+..+ +..++.+++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~~ 106 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASG 106 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEecH
Confidence 3467799998877666554431 224459999999999999999999987 344899988
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC---Ch---hhHHHhHhhhhhc----CcEEEEE
Q 046258 244 GALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GS---MDAANLFKPMLAR----GQLRCIG 313 (900)
Q Consensus 244 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~~----g~irvI~ 313 (900)
..+.. .+.+.....+..++..+.... +.++|+||++.+....... .. ....+.+...+.. ..+.+++
T Consensus 107 ~~~~~--~~~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 107 SDFVE--MFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHH--STTTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 87654 235566666777777665433 6889999999987543321 11 2223344444432 2367777
Q ss_pred ecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhH-HHHHHHHhhhhccCCCChh
Q 046258 314 ATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRA-LVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 314 att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~ea-l~~l~~~s~~~~~~~~~p~ 389 (900)
+++..+. .|+++.+ ||.. +.++.|+.++|.+||+.+... ..+++++ +..++..+.+| .+.
T Consensus 184 ~t~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~-----~~~ 247 (278)
T 1iy2_A 184 ATNRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGF-----VGA 247 (278)
T ss_dssp EESCTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC-----CHH
T ss_pred ecCCchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc------CCCCcccCHHHHHHHcCCC-----CHH
Confidence 7777653 7899988 8875 888999999999999865432 2343333 55555555444 334
Q ss_pred hHHHHHHHHHHHh
Q 046258 390 KAIDLVDEACANV 402 (900)
Q Consensus 390 ~a~~Lld~a~a~~ 402 (900)
+...++..++...
T Consensus 248 dl~~l~~~a~~~a 260 (278)
T 1iy2_A 248 DLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667777776543
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.46 E-value=5.1e-13 Score=139.24 Aligned_cols=168 Identities=14% Similarity=0.216 Sum_probs=123.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||||||||++|+.+++.+.....+++.++++++..... ..+ .. .....+|+|||
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~--~~~~~vliiDe 112 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--ALL----------------EG--LEQFDLICIDD 112 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--GGG----------------TT--GGGSSEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--HHH----------------Hh--ccCCCEEEEec
Confidence 37999999999999999999999987667889999887643210 000 00 12357999999
Q ss_pred ccccCHHH--HHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHh
Q 046258 669 VEKAHISV--FNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLN 746 (900)
Q Consensus 669 idk~~~~~--~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 746 (900)
++.++... ++.|+.+++.-. ......+|+|+|..+..+ ..+.+.+.+
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~----------------------~~~~~~l~~ 161 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA----------------------GFVLPDLVS 161 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT----------------------TCCCHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH----------------------HHhhhhhhh
Confidence 99997655 888888876411 112234777777643221 234588999
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 747 RLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 747 R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
||. .++.|.|++.+++.+++...+. ..| +.++++++++|+.. ++++ +|.+.++++.++...
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~~~l~~~-~~g~--~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAA-------MRG--LQLPEDVGRFLLNR-MARD--LRTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHH-------HTT--CCCCHHHHHHHHHH-TTTC--HHHHHHHHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHH-ccCC--HHHHHHHHHHHHHHH
Confidence 996 7899999999999999888776 233 57899999999976 5666 999999998766554
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.1e-13 Score=151.17 Aligned_cols=191 Identities=17% Similarity=0.246 Sum_probs=135.8
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..+++++|++..++.+...+......+++|+||||||||++|+++++.+...... ...++.++++.... .+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~----~~~ 105 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM----KSRILELNASDERG----ISI 105 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH----TTSEEEECSSSCCC----HHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccc----ccceEEEccccccc----hHH
Confidence 5688899999999999999988766789999999999999999999987421000 23478888765321 111
Q ss_pred HHHHHHHHHHHHHH---------------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHH
Q 046258 256 FEERLKAVLKEVEE---------------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLE 318 (900)
Q Consensus 256 ~~~~l~~~~~~~~~---------------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~ 318 (900)
++..+..+.. ...+.||||||++.+.+. ..+.|+.+++. ...++|.+++..
T Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 106 ----VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------AQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp ----HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ----HHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------HHHHHHHHHHhcCCCceEEEEeCch
Confidence 1111111111 123568999999998653 23477777763 356777777644
Q ss_pred HHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
. ...+.+.+|+..+.+..|+.++...+++..... .++.++++++..++..+.++ +..+..+++.+
T Consensus 174 ~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~ 238 (353)
T 1sxj_D 174 T-----RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGD------LRRGITLLQSA 238 (353)
T ss_dssp G-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSC------HHHHHHHHHHT
T ss_pred h-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 3 368999999998888888988888888766554 56779999999999988533 55777777766
Q ss_pred HHH
Q 046258 399 CAN 401 (900)
Q Consensus 399 ~a~ 401 (900)
+..
T Consensus 239 ~~~ 241 (353)
T 1sxj_D 239 SKG 241 (353)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=3.4e-13 Score=148.63 Aligned_cols=188 Identities=21% Similarity=0.353 Sum_probs=131.0
Q ss_pred ccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC--ceeEecccccc
Q 046258 551 RLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN--LLVRIDMSEYM 628 (900)
Q Consensus 551 ~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~--~~i~i~~~~~~ 628 (900)
++++.....++|++.+++.+...+... .-| +++|+||||||||++|+++++.+.+... .+..++++...
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~g-------~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDEG-------KLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTT-------CCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhcC-------CCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 455555666889998888888887542 223 5999999999999999999999876322 24445544311
Q ss_pred cccccccccCCCCCCcccccccchhHHHHh-----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 629 EQHSVSRLIGAPPGYVGHEEGGQLTEAVRR-----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 629 ~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~-----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
....+. ..+...... ..+.|+++||+|.+..+.++.|+..+++. ..++.
T Consensus 89 ~~~~ir---------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~ 142 (340)
T 1sxj_C 89 GIDVVR---------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-----------TKNTR 142 (340)
T ss_dssp SHHHHH---------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEE
T ss_pred cHHHHH---------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-----------CCCeE
Confidence 000000 011111111 23689999999999999999999999962 25678
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
||+++|. ...+.+.+.+|| ..+.|.|++.+++.+++...+. .. .
T Consensus 143 ~il~~n~--------------------------~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~-------~~--~ 186 (340)
T 1sxj_C 143 FCVLANY--------------------------AHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLV-------HE--K 186 (340)
T ss_dssp EEEEESC--------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-------TT--T
T ss_pred EEEEecC--------------------------ccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHH-------Hc--C
Confidence 8888886 345789999999 6899999999999888877664 23 3
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWL 812 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i 812 (900)
+.+++++++.++..+ .++ .|.+.+.+
T Consensus 187 ~~i~~~~~~~i~~~s-~G~--~r~~~~~l 212 (340)
T 1sxj_C 187 LKLSPNAEKALIELS-NGD--MRRVLNVL 212 (340)
T ss_dssp CCBCHHHHHHHHHHH-TTC--HHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CCC--HHHHHHHH
Confidence 578899999888763 223 44444444
No 126
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.46 E-value=6.6e-14 Score=155.27 Aligned_cols=191 Identities=17% Similarity=0.267 Sum_probs=134.6
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--------hhc
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL--------VAG 249 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l--------~~g 249 (900)
.++|.++.++++...+.+ ....+++++|++||||+++|+.||....+. +. |+.+||+++ ++|
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-------~~-fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK-------GA-FVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-------SC-EEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc-------CC-cEEEEcccCChHHHHHHhcC
Confidence 588999999888887765 566789999999999999999999887432 22 999999975 334
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEecC
Q 046258 250 AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGATT 316 (900)
Q Consensus 250 ~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~att 316 (900)
+. +|.|++..+...+.++.+++|+ ||||||+.|....|. .|+++++.+ .+|+|++|+
T Consensus 202 ~~-~g~~tga~~~~~g~~~~a~~gt-lfldei~~l~~~~Q~--------~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~ 271 (368)
T 3dzd_A 202 HE-KGAFTGALTRKKGKLELADQGT-LFLDEVGELDQRVQA--------KLLRVLETGSFTRLGGNQKIEVDIRVISATN 271 (368)
T ss_dssp EC-SCSSSSCCCCEECHHHHTTTSE-EEEETGGGSCHHHHH--------HHHHHHHHSEECCBTCCCBEECCCEEEEEES
T ss_pred cc-ccccCCcccccCChHhhcCCCe-EEecChhhCCHHHHH--------HHHHHHHhCCcccCCCCcceeeeeEEEEecC
Confidence 43 4444443333334455667677 999999999776555 888888765 468999998
Q ss_pred HHHHHHHhh--ccHHHHcccceeeecCCChHHHHH----HHHHHHHHHhcccC---cccChhHHHHHHHHhhhhccCCCC
Q 046258 317 LEEYRKYVE--KDAAFERRFQQVYVAEPSVPDTVS----ILRGLKEKYEGHHG---VRIQDRALVVAAQLSARYITGRHL 387 (900)
Q Consensus 317 ~~~~~~~~~--~d~al~~Rf~~i~i~~P~~~e~~~----ilr~l~~~~~~~~~---v~i~~eal~~l~~~s~~~~~~~~~ 387 (900)
.+....... -.+.|..|+..+.+..|+..+|.+ +++.+..++....+ ..++++++..+..+. +
T Consensus 272 ~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--------w 343 (368)
T 3dzd_A 272 KNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE--------W 343 (368)
T ss_dssp SCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC--------C
T ss_pred CCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC--------C
Confidence 765433211 134667788888888888877644 44556665554333 348999988887765 5
Q ss_pred hhhHHHHHH
Q 046258 388 PDKAIDLVD 396 (900)
Q Consensus 388 p~~a~~Lld 396 (900)
|.+...|-.
T Consensus 344 pGNvreL~n 352 (368)
T 3dzd_A 344 KGNVRELKN 352 (368)
T ss_dssp TTHHHHHHH
T ss_pred CcHHHHHHH
Confidence 656655443
No 127
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=9.4e-14 Score=161.59 Aligned_cols=191 Identities=15% Similarity=0.217 Sum_probs=130.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-----------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-----------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRL 238 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-----------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~ 238 (900)
.++++++|++..++.+.+++.. ....++||+||||||||++|+++|+.+ +..+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----------~~~~ 105 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDI 105 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----------TCEE
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----------CCCE
Confidence 4678899999999999998875 134679999999999999999999998 6779
Q ss_pred EEEechhhhhcccccchHHHH---------HHHHHHHH----HHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh
Q 046258 239 IALDMGALVAGAKYRGEFEER---------LKAVLKEV----EEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA 305 (900)
Q Consensus 239 ~~~~~~~l~~g~~~~g~~~~~---------l~~~~~~~----~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~ 305 (900)
+.++++...... ..... +..++..+ .....+.||||||+|.+....+ ...+.|..+++
T Consensus 106 i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----~~l~~L~~~l~ 176 (516)
T 1sxj_A 106 LEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----GGVGQLAQFCR 176 (516)
T ss_dssp EEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----THHHHHHHHHH
T ss_pred EEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----HHHHHHHHHHH
Confidence 999998653210 00000 00111111 1124578899999999976433 23456777777
Q ss_pred cCcEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCC
Q 046258 306 RGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGR 385 (900)
Q Consensus 306 ~g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~ 385 (900)
.....+|++++.... ..-+.+.+|+..+.+..|+.+++.++++.++.+ .++.++++++..++..+.+.
T Consensus 177 ~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~la~~s~Gd---- 244 (516)
T 1sxj_A 177 KTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRLIQTTRGD---- 244 (516)
T ss_dssp HCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHTTTC----
T ss_pred hcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc----
Confidence 665555555542211 112457778788999999999999988777665 46678999999998887443
Q ss_pred CChhhHHHHHHHHH
Q 046258 386 HLPDKAIDLVDEAC 399 (900)
Q Consensus 386 ~~p~~a~~Lld~a~ 399 (900)
...++.+++.++
T Consensus 245 --iR~~i~~L~~~~ 256 (516)
T 1sxj_A 245 --IRQVINLLSTIS 256 (516)
T ss_dssp --HHHHHHHHTHHH
T ss_pred --HHHHHHHHHHHH
Confidence 336666665544
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.45 E-value=2.5e-13 Score=149.15 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=116.3
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh-----hhccc
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL-----VAGAK 251 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l-----~~g~~ 251 (900)
.++.++|++..++.+...+.. +.|+||+||||||||++|+++|+.+ +.+++.++|... ..|..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECCTTCCHHHHHEEE
T ss_pred hccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecCCCCChhhcCCce
Confidence 345799999999999887765 4699999999999999999999987 555888887421 11111
Q ss_pred ccchHHHHHHHHHHHHHHcCC---CeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------cEEEEEec
Q 046258 252 YRGEFEERLKAVLKEVEEAEG---KVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-------------QLRCIGAT 315 (900)
Q Consensus 252 ~~g~~~~~l~~~~~~~~~~~~---~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~irvI~at 315 (900)
......+. .....+ +.||||||++.+.+. ..+.|.+.++.+ .+++|+++
T Consensus 93 ~~~~~~~~-------~~~~~g~l~~~vl~iDEi~~~~~~--------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 93 IYNQHKGN-------FEVKKGPVFSNFILADEVNRSPAK--------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ 157 (331)
T ss_dssp EEETTTTE-------EEEEECTTCSSEEEEETGGGSCHH--------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE
T ss_pred eecCCCCc-------eEeccCcccccEEEEEccccCCHH--------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEec
Confidence 00000000 000011 257999999987543 344777777643 46777777
Q ss_pred CHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHh------------------cccCcccChhHHHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYE------------------GHHGVRIQDRALVVAAQ 376 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~------------------~~~~v~i~~eal~~l~~ 376 (900)
|+.++......+++|.+||.. +.+..|+.+++.+|++....... ...++.++++++..++.
T Consensus 158 np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~ 237 (331)
T 2r44_A 158 NPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIE 237 (331)
T ss_dssp CTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred CCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 765432222468999999985 88999999999999876553211 01245566777766666
Q ss_pred Hhh
Q 046258 377 LSA 379 (900)
Q Consensus 377 ~s~ 379 (900)
+..
T Consensus 238 ~~~ 240 (331)
T 2r44_A 238 LVF 240 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 129
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.44 E-value=1.8e-12 Score=144.95 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=126.3
Q ss_pred CCCCchHHHHHHHHHHc------------------------------cCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 046258 180 PVIGRDEEIRRVVRILS------------------------------RRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDV 229 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~------------------------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~ 229 (900)
.++|++..++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 38999999988887662 1246789999999999999999999988
Q ss_pred CCCCCCcEEEEEechhhhhcccccch-HHHHHHHHHHH----HHHcCCCeEEEEcchhhhhhCCCC------CChhhHHH
Q 046258 230 PSNLADVRLIALDMGALVAGAKYRGE-FEERLKAVLKE----VEEAEGKVILFIDEIHLVLGAGRT------EGSMDAAN 298 (900)
Q Consensus 230 p~~l~~~~~~~~~~~~l~~g~~~~g~-~~~~l~~~~~~----~~~~~~~~iL~iDEi~~l~~~~~~------~~~~~~~~ 298 (900)
+.+|+.++|+.+... .+.|. ....+...+.. +..+. +.||||||++.+...+.. .....+.+
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~ 169 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQ-KGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 169 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHT-TSEEEEETGGGC--------------CHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcC-CeEEEEcCHHHHhhhcCCCceecccchHHHHH
Confidence 556999999887531 22332 12333333332 22334 557999999999875321 11123677
Q ss_pred hHhhhhhcC-----------------------cEEEEEecCHHHHHH---------------------------------
Q 046258 299 LFKPMLARG-----------------------QLRCIGATTLEEYRK--------------------------------- 322 (900)
Q Consensus 299 ~L~~~l~~g-----------------------~irvI~att~~~~~~--------------------------------- 322 (900)
.|+.+|+.+ ++.+|++++......
T Consensus 170 ~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 1um8_A 170 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 249 (376)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred HHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHH
Confidence 888888754 246777765211110
Q ss_pred ---HhhccHHHHcccce-eeecCCChHHHHHHHH----HHHHHHhcc-----cCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 323 ---YVEKDAAFERRFQQ-VYVAEPSVPDTVSILR----GLKEKYEGH-----HGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 323 ---~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr----~l~~~~~~~-----~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
.....|.|.+||.. +.++.++.++...++. .+..+|... .++.++++++..++..+.. ...-..
T Consensus 250 ~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R 326 (376)
T 1um8_A 250 DLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGAR 326 (376)
T ss_dssp HHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGG
T ss_pred HHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcH
Confidence 11246899999965 6677778888888886 344444322 2456899999999887521 011123
Q ss_pred hHHHHHHHHHHH
Q 046258 390 KAIDLVDEACAN 401 (900)
Q Consensus 390 ~a~~Lld~a~a~ 401 (900)
....+++.++..
T Consensus 327 ~L~~~le~~~~~ 338 (376)
T 1um8_A 327 GLRAIIEDFCLD 338 (376)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=2.2e-13 Score=152.87 Aligned_cols=216 Identities=17% Similarity=0.195 Sum_probs=142.2
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC------CCceeEecccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD------ENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~------~~~~i~i~~~~~~~~~~ 632 (900)
.++|++..++.+...+.....+ ..+ .+++|+||||||||++|+.+++.+... ..+++.++|........
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~----~~~-~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRG----EKP-SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSS----CCC-CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 3677777788887776544211 222 369999999999999999999988432 45799999987543321
Q ss_pred ----cccccCCCCCCccccccc---chhHHHHhC-CCeEEEEccccccCHH--HHHHHHHHhhCCeeecCCCceeecCCe
Q 046258 633 ----VSRLIGAPPGYVGHEEGG---QLTEAVRRR-PYSVVLFDEVEKAHIS--VFNTLLQVLDDGRLTDGQGRTVDFRNT 702 (900)
Q Consensus 633 ----~~~l~G~~~g~~g~~~~~---~l~~~~~~~-~~~vlllDEidk~~~~--~~~~Ll~~ld~g~~~d~~g~~~~~~~~ 702 (900)
...-+|.+....|..... .+...+... ...||+|||++.+... .++.|..+++...... ...++
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~------~~~~~ 168 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG------DRVWV 168 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------C
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC------CCceE
Confidence 111224333333332222 122233222 3569999999999776 6677777665311000 02467
Q ss_pred EEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 046258 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSHEQLRKVARLQMKDVAIRLAERG 781 (900)
Q Consensus 703 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~ 781 (900)
++|++||...- ...+.+.+.+||.. .+.|+||+.+++..|+...+.... .
T Consensus 169 ~~I~~t~~~~~-----------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-----~- 219 (387)
T 2v1u_A 169 SLVGITNSLGF-----------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF-----N- 219 (387)
T ss_dssp EEEEECSCSTT-----------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB-----C-
T ss_pred EEEEEECCCch-----------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc-----c-
Confidence 88898887420 24578999999976 899999999999999998886211 1
Q ss_pred CccccCHHHHHHHHHcCC--CCCCCchHHHHHHHHHHH
Q 046258 782 VALAVTDAALDIVLAESY--DPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 782 ~~~~~~~~a~~~l~~~~~--~~~~g~R~L~~~i~~~i~ 817 (900)
...+++++++.+.++.+ +++ +|.+.++++.++.
T Consensus 220 -~~~~~~~~~~~l~~~~~~~~G~--~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 220 -PGVLDPDVVPLCAALAAREHGD--ARRALDLLRVAGE 254 (387)
T ss_dssp -TTTBCSSHHHHHHHHHHSSSCC--HHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHhccC--HHHHHHHHHHHHH
Confidence 35789999999998876 345 8888888876653
No 131
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.44 E-value=1.2e-12 Score=143.15 Aligned_cols=197 Identities=12% Similarity=0.183 Sum_probs=125.1
Q ss_pred CCCCCC-C--chHHHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccc
Q 046258 177 KLDPVI-G--RDEEIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAK 251 (900)
Q Consensus 177 ~~~~~i-G--~~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~ 251 (900)
+|+.++ | .......+..++... ..++++|+||||||||++|+++++.+...+ .+++++++..+.. .
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~-------~~~~~i~~~~~~~--~ 79 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG-------YRVIYSSADDFAQ--A 79 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT-------CCEEEEEHHHHHH--H
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEHHHHHH--H
Confidence 466776 4 344555555655553 457899999999999999999999886553 3499999887643 1
Q ss_pred ccchHHHH-HHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHH
Q 046258 252 YRGEFEER-LKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAF 330 (900)
Q Consensus 252 ~~g~~~~~-l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al 330 (900)
+.+.+... ........ ..+.||||||+|.+..... ....+...+....+.+...++++++... .....++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~vL~iDEi~~l~~~~~--~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L 152 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY---KSVDLLLLDDVQFLSGKER--TQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRL 152 (324)
T ss_dssp HHHHHHHTCHHHHHHHH---HTCSEEEEECGGGGTTCHH--HHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHH
T ss_pred HHHHHHcCcHHHHHHHh---cCCCEEEEcCcccccCChH--HHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHh
Confidence 12222111 11112212 1256799999999864211 1223344454455566665555554332 112368999
Q ss_pred Hcccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 331 ERRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 331 ~~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
.+||. .+.++. +.+++.++++..... .++.++++++..++..+ +.+ ..+..+++.+++.
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 99994 577777 889999999877765 46789999999888876 433 2455556655544
No 132
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=2.3e-13 Score=158.35 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=135.5
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHh----cCCCCCC----CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSR----AGLGRPQ----QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~----~g~~~~~----~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
.++.+.....++|++..++.+...+..+. .+...+. .+..++||+||||||||++|+++|+.+. .+++.
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~ 107 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG---YDILE 107 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEE
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence 44555556678999999999988887643 2222221 1334799999999999999999999994 48999
Q ss_pred ecccccccccccccccCCCCCCcccccccchhHH----HHhCCCeEEEEccccccCHH---HHHHHHHHhhCCeeecCCC
Q 046258 622 IDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEA----VRRRPYSVVLFDEVEKAHIS---VFNTLLQVLDDGRLTDGQG 694 (900)
Q Consensus 622 i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~----~~~~~~~vlllDEidk~~~~---~~~~Ll~~ld~g~~~d~~g 694 (900)
++|+.+.........++...+. ....+.+... .....+.||||||+|.+... .++.|+++++.+
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------- 178 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------- 178 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------
T ss_pred EeCCCcchHHHHHHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------
Confidence 9998865433222111110000 0000111111 11245689999999999764 347888888752
Q ss_pred ceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHH
Q 046258 695 RTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVA 774 (900)
Q Consensus 695 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~ 774 (900)
++.||+++|... ...+ +.|.+|+ ..+.|.+++.+++.+++...+.
T Consensus 179 ------~~~iIli~~~~~------------------------~~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~--- 223 (516)
T 1sxj_A 179 ------STPLILICNERN------------------------LPKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAI--- 223 (516)
T ss_dssp ------SSCEEEEESCTT------------------------SSTT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHH---
T ss_pred ------CCCEEEEEcCCC------------------------Cccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHH---
Confidence 223444444321 1122 3466666 7899999999999988876665
Q ss_pred HHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 046258 775 IRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815 (900)
Q Consensus 775 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~ 815 (900)
..| +.+++++++.|++.+ .++ .|.+.+.++..
T Consensus 224 ----~~~--~~i~~~~l~~la~~s-~Gd--iR~~i~~L~~~ 255 (516)
T 1sxj_A 224 ----REK--FKLDPNVIDRLIQTT-RGD--IRQVINLLSTI 255 (516)
T ss_dssp ----HHT--CCCCTTHHHHHHHHT-TTC--HHHHHHHHTHH
T ss_pred ----HcC--CCCCHHHHHHHHHHc-CCc--HHHHHHHHHHH
Confidence 233 468999999999764 444 88888877654
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=3.4e-13 Score=149.64 Aligned_cols=205 Identities=15% Similarity=0.203 Sum_probs=131.5
Q ss_pred cccChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc-
Q 046258 550 TRLGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM- 628 (900)
Q Consensus 550 ~~~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~- 628 (900)
.++++.....++|++.+++.+...+. .....| +++|+||+|+|||+++++++..+.+....-+.++...+.
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~------~~~~~~--~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD------QPRDLP--HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT------CTTCCC--CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh------hCCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 45566666678898888777666541 111223 499999999999999999999775533222222211110
Q ss_pred ------------cccccccccCCCCCCcccccccchhHHHH-----------------hCCCeEEEEccccccCHHHHHH
Q 046258 629 ------------EQHSVSRLIGAPPGYVGHEEGGQLTEAVR-----------------RRPYSVVLFDEVEKAHISVFNT 679 (900)
Q Consensus 629 ------------~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-----------------~~~~~vlllDEidk~~~~~~~~ 679 (900)
... .-.+.+.. .+......+.+.+. ..++.|++|||++.+++..++.
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~ 153 (354)
T 1sxj_E 78 ASNRKLELNVVSSPY-HLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAA 153 (354)
T ss_dssp --------CCEECSS-EEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHH
T ss_pred cccccceeeeecccc-eEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHH
Confidence 000 00111100 01100001111111 1245799999999999999999
Q ss_pred HHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH
Q 046258 680 LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH 759 (900)
Q Consensus 680 Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~ 759 (900)
|++.|++- ..++.||++||.. ..+.+.+.+|| ..+.|.|++.
T Consensus 154 L~~~le~~-----------~~~~~~Il~t~~~--------------------------~~l~~~l~sR~-~~~~~~~~~~ 195 (354)
T 1sxj_E 154 LRRTMEKY-----------SKNIRLIMVCDSM--------------------------SPIIAPIKSQC-LLIRCPAPSD 195 (354)
T ss_dssp HHHHHHHS-----------TTTEEEEEEESCS--------------------------CSSCHHHHTTS-EEEECCCCCH
T ss_pred HHHHHHhh-----------cCCCEEEEEeCCH--------------------------HHHHHHHHhhc-eEEecCCcCH
Confidence 99999862 2467788888763 34788999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 760 EQLRKVARLQMKDVAIRLAERGVALAVT-DAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 760 e~~~~I~~~~l~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+++..++...+. ..| +.++ +++++.|+..+ .++ .|.+.+.++...
T Consensus 196 ~~~~~~l~~~~~-------~~~--~~~~~~~~l~~i~~~~-~G~--~r~a~~~l~~~~ 241 (354)
T 1sxj_E 196 SEISTILSDVVT-------NER--IQLETKDILKRIAQAS-NGN--LRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHHHH-------HHT--CEECCSHHHHHHHHHH-TTC--HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH-------HcC--CCCCcHHHHHHHHHHc-CCC--HHHHHHHHHHHH
Confidence 999999888776 233 4788 99999999764 444 888887776543
No 134
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=5.4e-13 Score=145.79 Aligned_cols=188 Identities=16% Similarity=0.214 Sum_probs=137.6
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..+++++|++..++.+...+.....++++|+||||+|||++|+.+++.+..... +..++.++++... +
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~~------~- 85 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-----ADGVLELNASDDR------G- 85 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-----HHHEEEECTTSCC------S-
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-----cCCEEEecCcccc------C-
Confidence 356779999999999999998876667999999999999999999998743211 2347788775421 1
Q ss_pred HHHHHHHHHHHHHH------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhcc
Q 046258 256 FEERLKAVLKEVEE------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKD 327 (900)
Q Consensus 256 ~~~~l~~~~~~~~~------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d 327 (900)
...++..+..+.. .+.+.|+||||+|.+.. ...+.|..+++. +.+++|++|+... ...
T Consensus 86 -~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~~~~~-----~l~ 151 (323)
T 1sxj_B 86 -IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GAQQALRRTMELYSNSTRFAFACNQSN-----KII 151 (323)
T ss_dssp -HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHHTTTTEEEEEEESCGG-----GSC
T ss_pred -hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HHHHHHHHHHhccCCCceEEEEeCChh-----hch
Confidence 2234444444431 12367899999999854 234577777764 4678888886533 367
Q ss_pred HHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHH
Q 046258 328 AAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEAC 399 (900)
Q Consensus 328 ~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~ 399 (900)
+.+.+|+..+.+..|+.++...+++..... .++.++++++..++..+.+ .|..+..+++..+
T Consensus 152 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 152 EPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEG------DMRQAINNLQSTV 213 (323)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred hHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 899999998999999999999888776655 4667899999998888733 3557777776655
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=139.09 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=123.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccc--cchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllD 667 (900)
.++|+||||||||+|+++||..+.. +++.+++.++... |+|.... +.+++..+....+++++|
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~------------~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNM------------YVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSS------------TTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhh------------hhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 4999999999999999999998744 6888888765321 2222111 223333334456899999
Q ss_pred cccccCH-----------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHH
Q 046258 668 EVEKAHI-----------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV 736 (900)
Q Consensus 668 Eidk~~~-----------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (900)
||+.+.. .+.+.++..|+.|. .-..+++++++|.+
T Consensus 111 eid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~---------~~~~~i~ia~tn~p------------------------- 156 (274)
T 2x8a_A 111 EVDALCPRRSDRETGASVRVVNQLLTEMDGLE---------ARQQVFIMAATNRP------------------------- 156 (274)
T ss_dssp TCTTTCC---------CTTHHHHHHHHHHTCC---------STTCEEEEEEESCG-------------------------
T ss_pred hhhhhhcccCCCcchHHHHHHHHHHHhhhccc---------ccCCEEEEeecCCh-------------------------
Confidence 9997532 35677888887653 22457888888874
Q ss_pred HhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCH-HHHHHHHHcCCCCCCCchHHHHHHH
Q 046258 737 RKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTD-AALDIVLAESYDPIYGARPIRRWLE 813 (900)
Q Consensus 737 ~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~-~a~~~l~~~~~~~~~g~R~L~~~i~ 813 (900)
..++|+++. |||..|.+++++.++..+|++.++.. +....++. -.++.|+....+..|...+|..+++
T Consensus 157 -~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 157 -DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN--------GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp -GGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT--------TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred -hhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc--------ccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 457899996 99999999999999999999887651 11122222 2255666442234566889999999
Q ss_pred HHHHHHHHHHHH
Q 046258 814 KKVVTELSRMLV 825 (900)
Q Consensus 814 ~~i~~~l~~~i~ 825 (900)
++...++.+.+.
T Consensus 228 ~a~~~a~~~~~~ 239 (274)
T 2x8a_A 228 EASICALRQEMA 239 (274)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 988887766544
No 136
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.43 E-value=3e-13 Score=157.77 Aligned_cols=178 Identities=17% Similarity=0.298 Sum_probs=114.9
Q ss_pred CCCCchHHHHHHHHHHcc------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc---
Q 046258 180 PVIGRDEEIRRVVRILSR------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA--- 250 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~--- 250 (900)
+++|.+...+++.+.+.. ....+++|+||||||||++|++||..+ +.+++.++|+.+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 378888877777554431 245579999999999999999999998 6669999887653211
Q ss_pred ----cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc-----------------CcE
Q 046258 251 ----KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR-----------------GQL 309 (900)
Q Consensus 251 ----~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------g~i 309 (900)
.+.|...+.+...+..+.. .++ ||||||++.+.+..+. +..+.|+++|+. ..+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~-~~~-vl~lDEid~l~~~~~~----~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGK-LNP-VFLLDEIDKMSSDFRG----DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCS-SSE-EEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhc-cCC-EEEEhhhhhhhhhhcc----CHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 2334444444444443221 324 7999999999876442 233466666642 457
Q ss_pred EEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHH-HHHHhccc-----CcccChhHHHHHHHHh
Q 046258 310 RCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGL-KEKYEGHH-----GVRIQDRALVVAAQLS 378 (900)
Q Consensus 310 rvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l-~~~~~~~~-----~v~i~~eal~~l~~~s 378 (900)
++|++||+.. ..+++|++||..|.++.|+.+++..|++.. ..++...+ ++.++++++..++...
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 8999988754 478999999998999999999999998654 34333333 3457899888877633
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.42 E-value=1.3e-12 Score=136.15 Aligned_cols=193 Identities=14% Similarity=0.091 Sum_probs=128.1
Q ss_pred CCCCCCCc---hHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhccccc
Q 046258 177 KLDPVIGR---DEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYR 253 (900)
Q Consensus 177 ~~~~~iG~---~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~ 253 (900)
++++++|. ...+..+...+......+++|+||||||||++|+.+++.+...+ ..++.+++..+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~-- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE-------RRSFYIPLGIHASIST-- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEGGGGGGSCG--
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEEHHHHHHHHH--
Confidence 46677763 46677777766665678899999999999999999999986543 3488899887654211
Q ss_pred chHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcc
Q 046258 254 GEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERR 333 (900)
Q Consensus 254 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~R 333 (900)
..+. ....+.+|||||++.+..... ....+...+....+.+.+++|++++.... .+....+.+.+|
T Consensus 97 --------~~~~---~~~~~~vliiDe~~~~~~~~~--~~~~l~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~l~~r 162 (242)
T 3bos_A 97 --------ALLE---GLEQFDLICIDDVDAVAGHPL--WEEAIFDLYNRVAEQKRGSLIVSASASPM-EAGFVLPDLVSR 162 (242)
T ss_dssp --------GGGT---TGGGSSEEEEETGGGGTTCHH--HHHHHHHHHHHHHHHCSCEEEEEESSCTT-TTTCCCHHHHHH
T ss_pred --------HHHH---hccCCCEEEEeccccccCCHH--HHHHHHHHHHHHHHcCCCeEEEEcCCCHH-HHHHhhhhhhhH
Confidence 0111 112356799999999864320 01122334444455666655555542210 111245889999
Q ss_pred c---ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHh
Q 046258 334 F---QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 334 f---~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
| ..+.+..|+.+++.++++.+... .++.++++++..++..+.+ .+..+..+++.++...
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMAR------DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTT------CHHHHHHHHHHHHHHH
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccC------CHHHHHHHHHHHHHHH
Confidence 9 56889999999999999877764 4667899999988887633 3446677777666543
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=2.8e-12 Score=143.72 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=140.5
Q ss_pred CCCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-----
Q 046258 178 LDPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA----- 248 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~----- 248 (900)
.+.++||+.+++.+.+.+.. ....+++|+||||||||++++.++..+...... +..++.++|.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHH
Confidence 35799999999999998874 456689999999999999999999987543110 34589999864311
Q ss_pred -------cc--cccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhh---hcCcEEEEEec
Q 046258 249 -------GA--KYRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML---ARGQLRCIGAT 315 (900)
Q Consensus 249 -------g~--~~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l---~~g~irvI~at 315 (900)
+. ...| .....+..+...+...+.++||||||++.+..... .+....|...+ ....+.+|++|
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEEEE
Confidence 00 0112 13333445555555445588999999999986531 12334444445 45678899999
Q ss_pred CHHHHHHHhhccHHHHccc--ceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHH
Q 046258 316 TLEEYRKYVEKDAAFERRF--QQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAID 393 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf--~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~ 393 (900)
+...... ..++.+.+|| ..+.++.++.++..++++...... .....++++++..+...+... ...|..+..
T Consensus 171 ~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~ 243 (386)
T 2qby_A 171 NDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDARRALD 243 (386)
T ss_dssp SCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCHHHHHH
T ss_pred CCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 7654322 2567888888 458888889999999987765431 123468889988888887521 134667788
Q ss_pred HHHHHHHHh
Q 046258 394 LVDEACANV 402 (900)
Q Consensus 394 Lld~a~a~~ 402 (900)
+++.++...
T Consensus 244 ll~~a~~~a 252 (386)
T 2qby_A 244 LLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 139
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=1.6e-14 Score=138.00 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=91.9
Q ss_pred CCCCchHHHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHH
Q 046258 180 PVIGRDEEIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFE 257 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~ 257 (900)
+++|+++.++++.+.+.+ ....|++|+||||||||++|+++|.... +|+.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-----------~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-----------PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-----------CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-----------CeEEechhhCChHh-------
Confidence 479999999999998875 5677999999999999999999998752 49999998875421
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecCHHHHH-HHhhccHHHHcc
Q 046258 258 ERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATTLEEYR-KYVEKDAAFERR 333 (900)
Q Consensus 258 ~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att~~~~~-~~~~~d~al~~R 333 (900)
... .+..+.++ +|||||++.+....+ ..|.+++++ ..+++|++||.+... .-- ..+.|..|
T Consensus 67 --~~~---~~~~a~~~-~l~lDei~~l~~~~q--------~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~r 131 (143)
T 3co5_A 67 --PME---LLQKAEGG-VLYVGDIAQYSRNIQ--------TGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGL 131 (143)
T ss_dssp --HHH---HHHHTTTS-EEEEEECTTCCHHHH--------HHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHH
T ss_pred --hhh---HHHhCCCC-eEEEeChHHCCHHHH--------HHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHH
Confidence 122 23344444 599999998865433 367777764 359999999765321 100 24566678
Q ss_pred cceeeecCCCh
Q 046258 334 FQQVYVAEPSV 344 (900)
Q Consensus 334 f~~i~i~~P~~ 344 (900)
|..+.+..|+.
T Consensus 132 l~~~~i~lPpL 142 (143)
T 3co5_A 132 FSESVVRIPPL 142 (143)
T ss_dssp SSSEEEEECCC
T ss_pred hcCcEEeCCCC
Confidence 87777766653
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=1.3e-12 Score=136.08 Aligned_cols=193 Identities=21% Similarity=0.224 Sum_probs=131.0
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCC-CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTK-NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~-~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--------------~~~~~~~ 240 (900)
..+++++|++.+++.+...+..... ..++|+||||||||++++.+++.+......... ....++.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 3466799999999999998877543 458999999999999999999988543211000 0012333
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
++... ......++.++..+.. ..++.+|||||+|.+.. ...+.|...+++ ..+++|++|
T Consensus 100 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 100 IDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp EETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred ecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------HHHHHHHHHHhcCCCceEEEEEe
Confidence 33221 0112233344433221 23468899999998743 234466666654 468888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|+..+.+..++.++..++++..... .+..++++++..++..+.+ .|..+..++
T Consensus 164 ~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------~~~~~~~~~ 228 (250)
T 1njg_A 164 TDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------SLRDALSLT 228 (250)
T ss_dssp SCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred CChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC------CHHHHHHHH
Confidence 6543 357889999888899889999988888776654 4667889998888888733 566787888
Q ss_pred HHHH
Q 046258 396 DEAC 399 (900)
Q Consensus 396 d~a~ 399 (900)
+.++
T Consensus 229 ~~~~ 232 (250)
T 1njg_A 229 DQAI 232 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 141
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.41 E-value=2.1e-12 Score=141.73 Aligned_cols=174 Identities=15% Similarity=0.132 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc------c--ccccc
Q 046258 564 AEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME------Q--HSVSR 635 (900)
Q Consensus 564 ~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~------~--~~~~~ 635 (900)
.++++.+..+++.. +....+||+||+|+|||++|+.+|+.+.+....- ...|+.... . .+...
T Consensus 8 ~~~~~~l~~~i~~~--------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 8 RPDFEKLVASYQAG--------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHHTT--------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHHcC--------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCCCCEEE
Confidence 45556666666432 2223599999999999999999999997633110 011211100 0 00111
Q ss_pred ccCCC-CCCcccccccchhHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 636 LIGAP-PGYVGHEEGGQLTEAVRR----RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 636 l~G~~-~g~~g~~~~~~l~~~~~~----~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
+.+.. ....+.+..+.+.+.+.. .++.|++|||+|+++.+.++.|++.|++ ...+++||++||.
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il~t~~ 147 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFLATRE 147 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEEEESC
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCC
Confidence 11110 011111111222223222 2468999999999999999999999997 2357889998886
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA 790 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a 790 (900)
...+.|.+.+|| ..+.|.|++.+++.+++...+ .+++++
T Consensus 148 --------------------------~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~ 186 (334)
T 1a5t_A 148 --------------------------PERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--------------TMSQDA 186 (334)
T ss_dssp --------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--------------CCCHHH
T ss_pred --------------------------hHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--------------CCCHHH
Confidence 356889999999 789999999999887765432 467888
Q ss_pred HHHHHHcC
Q 046258 791 LDIVLAES 798 (900)
Q Consensus 791 ~~~l~~~~ 798 (900)
++.++..+
T Consensus 187 ~~~l~~~s 194 (334)
T 1a5t_A 187 LLAALRLS 194 (334)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887653
No 142
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=2e-14 Score=175.08 Aligned_cols=164 Identities=23% Similarity=0.386 Sum_probs=127.7
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-------------CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-------------RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
-.+++++|.+...+.+.+.+.. ..+.++||+||||||||++|++||..+ +..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 3467788998888888876642 245679999999999999999999998 55588889
Q ss_pred chhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCC-C-----hhhHHHhHhhhhh----cCcEEEE
Q 046258 243 MGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-G-----SMDAANLFKPMLA----RGQLRCI 312 (900)
Q Consensus 243 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~-~-----~~~~~~~L~~~l~----~g~irvI 312 (900)
++.+.. +|.|+.+..++.+|..+.... ++||||||||.+....... + ...+.+.|+..|+ ...+.+|
T Consensus 544 ~~~l~~--~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 544 GPELLT--MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CSSSTT--CCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred chHhhh--hhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 888865 578888899999999888766 7789999999998766442 1 1233456666554 3467889
Q ss_pred EecCHHHHHHHhhccHHHHc--ccce-eeecCCChHHHHHHHHHHHHH
Q 046258 313 GATTLEEYRKYVEKDAAFER--RFQQ-VYVAEPSVPDTVSILRGLKEK 357 (900)
Q Consensus 313 ~att~~~~~~~~~~d~al~~--Rf~~-i~i~~P~~~e~~~ilr~l~~~ 357 (900)
++||+.+. +|+++.+ ||.. |+++.|+.+++..||+.+...
T Consensus 621 ~tTN~~~~-----ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 621 GATNRPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCBSCGG-----GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EecCCccc-----CCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 99987653 7999999 9985 888999999999999776543
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=4.9e-12 Score=141.81 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=136.2
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcC-----CCCCCCCCcEEEEEechhhh-h
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRG-----DVPSNLADVRLIALDMGALV-A 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~-----~~p~~l~~~~~~~~~~~~l~-~ 248 (900)
+.++|++.+++.+...+.. ..+.+++|+||||||||++|+.+++.+... +.| +..++.++|.... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYK----DVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSST----TCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCC----CceEEEEECccCCCC
Confidence 5699999999999887754 345679999999999999999999987442 111 4569999987643 1
Q ss_pred -------------ccc--ccch-HHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhH-HHhHhhhhhcCcEEE
Q 046258 249 -------------GAK--YRGE-FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDA-ANLFKPMLARGQLRC 311 (900)
Q Consensus 249 -------------g~~--~~g~-~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~-~~~L~~~l~~g~irv 311 (900)
|.. ..|. ....+..+...+.. . +.||||||+|.+..... .+. ...|.... ..+++
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~vlilDEi~~l~~~~~----~~~~l~~l~~~~--~~~~i 167 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-I-RAIIYLDEVDTLVKRRG----GDIVLYQLLRSD--ANISV 167 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-S-CEEEEEETTHHHHHSTT----SHHHHHHHHTSS--SCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-C-CCEEEEECHHHhccCCC----CceeHHHHhcCC--cceEE
Confidence 000 0111 12223333333322 2 33899999999976531 122 33333333 67999
Q ss_pred EEecCHHHHHHHhhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhh
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDK 390 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~ 390 (900)
|++|+..... ...++.+.+||. .+.++.++.++...+++..... ...+..++++++..++..+.++. ..+..
T Consensus 168 I~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~---G~~r~ 240 (384)
T 2qby_B 168 IMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKEH---GDARK 240 (384)
T ss_dssp EEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTTC---CCHHH
T ss_pred EEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhcc---CCHHH
Confidence 9999765321 135788999985 5788888999999998776653 22345688999999998885321 23557
Q ss_pred HHHHHHHHHHHh
Q 046258 391 AIDLVDEACANV 402 (900)
Q Consensus 391 a~~Lld~a~a~~ 402 (900)
+.+++..++...
T Consensus 241 a~~~l~~a~~~a 252 (384)
T 2qby_B 241 AVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 778888776554
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=4.2e-12 Score=139.32 Aligned_cols=201 Identities=16% Similarity=0.260 Sum_probs=133.5
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH 631 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~ 631 (900)
++....+.++|++.+++.+...+...... ..+..+++|+||||+|||+||++||..+.. ++...+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~~~sg~~~~--- 88 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASELQT---NIHVTSGPVLV--- 88 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEEEEETTTCC---
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEechHhc---
Confidence 44444456778888888888777654211 233347999999999999999999999843 33333221110
Q ss_pred ccccccCCCCCCcccccccchhHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhCCeee-----cCCCc--eeecCCeE
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEAVRR-RPYSVVLFDEVEKAHISVFNTLLQVLDDGRLT-----DGQGR--TVDFRNTV 703 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~~~~-~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~-----d~~g~--~~~~~~~~ 703 (900)
.++.+...... ....|+|+||++.+.+.+++.|+..++.+... ....+ ......+.
T Consensus 89 ----------------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 89 ----------------KQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ----------------SHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ----------------CHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 01122222222 35689999999999999999999888765321 00001 11223455
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCc
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVA 783 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~ 783 (900)
++.++|. ...+++.+.+||...+.|.|++.+++.+|+++.... . .
T Consensus 153 li~at~~--------------------------~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~--~ 197 (334)
T 1in4_A 153 LVGATTR--------------------------SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------M--D 197 (334)
T ss_dssp EEEEESC--------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------T--T
T ss_pred EEEecCC--------------------------cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------c--C
Confidence 6666655 345889999999778899999999999999876652 2 3
Q ss_pred cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 784 LAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 784 ~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
+.++++++.+|++.. .+. .|.+.+++++..
T Consensus 198 ~~~~~~~~~~ia~~~-~G~--~R~a~~ll~~~~ 227 (334)
T 1in4_A 198 VEIEDAAAEMIAKRS-RGT--PRIAIRLTKRVR 227 (334)
T ss_dssp CCBCHHHHHHHHHTS-TTC--HHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhc-CCC--hHHHHHHHHHHH
Confidence 578999999999764 333 788777776543
No 145
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.40 E-value=4.3e-13 Score=152.48 Aligned_cols=175 Identities=19% Similarity=0.322 Sum_probs=124.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCcccccccchhHHHH-hC-CCeEE
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR-RR-PYSVV 664 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~-~~-~~~vl 664 (900)
.+++|+||||||||+||++|+..+... +.+++.+++..+..... ..+.. +....... .. ...||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSMKE-----------GKLNEFREKYRKKVDIL 198 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHH-HHHHT-----------TCHHHHHHHHTTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHc-----------ccHHHHHHHhcCCCCEE
Confidence 369999999999999999999988543 55788999887643211 11110 11112222 12 56899
Q ss_pred EEccccccCH--HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccH
Q 046258 665 LFDEVEKAHI--SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP 742 (900)
Q Consensus 665 llDEidk~~~--~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (900)
|||||+.+.. ..++.|+..++.-. -.+..+|+||+..+..+ ..+.+
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~l----------------------~~l~~ 246 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKL----------------------SEFQD 246 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGGC----------------------SSCCH
T ss_pred EEeCcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHHH----------------------HHHHH
Confidence 9999999876 78888888886311 12345666776654322 23789
Q ss_pred HHHhccc--ceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHH
Q 046258 743 ELLNRLD--EIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTE 819 (900)
Q Consensus 743 ~ll~R~~--~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~ 819 (900)
.|++||. .++.+.|++.+++..|+...+.. .+ +.++++++++|+.. ++++ +|.+.+++++++...
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~-~~gn--~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAEN-VDDN--LRRLRGAIIKLLVYK 313 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHH-CCSC--HHHHHHHHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cCCC--HHHHHHHHHHHHHHH
Confidence 9999996 68999999999999999887752 23 57899999999975 5566 999999998766543
No 146
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.40 E-value=4.9e-13 Score=153.35 Aligned_cols=170 Identities=22% Similarity=0.333 Sum_probs=109.4
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC-------CCceeEecccccccccc
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD-------ENLLVRIDMSEYMEQHS 632 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-------~~~~i~i~~~~~~~~~~ 632 (900)
++|++..++.+...+.+. ...++||+||||||||++|++||..+.+. +.+++.+||+.
T Consensus 182 iiGr~~~i~~l~~~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------ 246 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------ 246 (468)
T ss_dssp CCCCHHHHHHHHHHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred ccCcHHHHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------
Confidence 678888888888877532 23479999999999999999999998542 44677777761
Q ss_pred cccccCCCCCCcccccc--cchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 633 VSRLIGAPPGYVGHEEG--GQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 633 ~~~l~G~~~g~~g~~~~--~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
.|.|..+. ..+.+.+....++|||+| ...+.++.|++.|+.| ++++|++||.
T Consensus 247 ---------~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at~~ 300 (468)
T 3pxg_A 247 ---------KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGATTL 300 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEECCT
T ss_pred ---------cccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecCCH
Confidence 13332221 234445555677899999 5667889999999864 4679999987
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA 790 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a 790 (900)
+.-.- .-.++++|.+|| ..|.|.+++.+++..|++.++..+.. .+ .+.+++++
T Consensus 301 ~e~~~---------------------~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~---~~--~~~i~~~a 353 (468)
T 3pxg_A 301 DEYRK---------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA---HH--RVSITDDA 353 (468)
T ss_dssp TTTHH---------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG---GS--SCSCCHHH
T ss_pred HHHHH---------------------HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHHHHH---hc--CCCCCHHH
Confidence 53100 123689999999 57999999999999999876653321 12 34667777
Q ss_pred HHHHHHc
Q 046258 791 LDIVLAE 797 (900)
Q Consensus 791 ~~~l~~~ 797 (900)
+.+++.+
T Consensus 354 l~~l~~~ 360 (468)
T 3pxg_A 354 IEAAVKL 360 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666643
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.39 E-value=1e-12 Score=138.54 Aligned_cols=168 Identities=23% Similarity=0.373 Sum_probs=113.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc--ccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllD 667 (900)
.++|+||||||||+|+++|+..+. .+++.+++..+... +.+... .+.+.+.......+++++|
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~i~~~D 115 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEM------------FVGVGAARVRDLFETAKRHAPCIVFID 115 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHS------------CTTHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHH------------HhhHHHHHHHHHHHHHHhcCCeEEEeh
Confidence 499999999999999999999884 47888887665321 111111 0112222222345899999
Q ss_pred cccccCH--------------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 668 EVEKAHI--------------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 668 Eidk~~~--------------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
||+.+.. ..++.|+..|+.|. .-..+++++++|.+
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~---------~~~~~i~~a~t~~p---------------------- 164 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE---------KDTAIVVMAATNRP---------------------- 164 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHHHHHTCC---------TTCCEEEEEEESCG----------------------
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHhCCC---------CCCCEEEEEccCCc----------------------
Confidence 9986531 24567777777543 12346788888864
Q ss_pred HHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHH
Q 046258 734 QEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRR 810 (900)
Q Consensus 734 ~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~ 810 (900)
..+++++++ ||+..+.+++++.++..+|++.++. + +.+++++ +..|+. .|+++ ..|+|++
T Consensus 165 ----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~---------~--~~~~~~~~~~~la~-~~~G~-~~~dl~~ 227 (254)
T 1ixz_A 165 ----DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---------G--KPLAEDVDLALLAK-RTPGF-VGADLEN 227 (254)
T ss_dssp ----GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT---------T--SCBCTTCCHHHHHH-TCTTC-CHHHHHH
T ss_pred ----hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc---------C--CCCCcccCHHHHHH-HcCCC-CHHHHHH
Confidence 347888886 8999999999999999999876543 2 2344444 566664 46544 3589999
Q ss_pred HHHHHHHHHH
Q 046258 811 WLEKKVVTEL 820 (900)
Q Consensus 811 ~i~~~i~~~l 820 (900)
+++++.....
T Consensus 228 ~~~~a~~~a~ 237 (254)
T 1ixz_A 228 LLNEAALLAA 237 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987765543
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.38 E-value=5.6e-12 Score=140.75 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=134.2
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--------------CCcEEEE
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--------------ADVRLIA 240 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--------------~~~~~~~ 240 (900)
..+++++|++..++.+...+......+ ++|+||+|||||++|+.+++.+.....+... ....++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE
Confidence 467889999999999999887755444 7899999999999999999988432211000 0012344
Q ss_pred EechhhhhcccccchHHHHHHHHHHHHHH---cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEec
Q 046258 241 LDMGALVAGAKYRGEFEERLKAVLKEVEE---AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGAT 315 (900)
Q Consensus 241 ~~~~~l~~g~~~~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~at 315 (900)
++.+.- .... .++.++..+.. .+++.|+||||+|.+.. ...+.|..++++ +.+++|++|
T Consensus 93 ~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 93 IDAASR----TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp EETTCS----CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred eccccc----CCHH----HHHHHHHHHhhccccCCeEEEEEECcchhcH--------HHHHHHHHHHhcCCCceEEEEEe
Confidence 443221 1111 23344444332 23467899999998853 344577777764 467888888
Q ss_pred CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHH
Q 046258 316 TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLV 395 (900)
Q Consensus 316 t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Ll 395 (900)
+... ...+.+.+|+..+.+..|+.++...+++..... .++.++++++..++..+.+ .|..+..++
T Consensus 157 ~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G------~~r~~~~~l 221 (373)
T 1jr3_A 157 TDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------SLRDALSLT 221 (373)
T ss_dssp SCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSS------CHHHHHHHH
T ss_pred CChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCC------CHHHHHHHH
Confidence 6443 257889999988999999999988888777665 4677899999988888733 455788888
Q ss_pred HHHHHH
Q 046258 396 DEACAN 401 (900)
Q Consensus 396 d~a~a~ 401 (900)
+.+...
T Consensus 222 ~~~~~~ 227 (373)
T 1jr3_A 222 DQAIAS 227 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776543
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.38 E-value=1.6e-12 Score=138.93 Aligned_cols=167 Identities=23% Similarity=0.370 Sum_probs=112.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccc--ccchhHHHHhCCCeEEEEc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE--GGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~--~~~l~~~~~~~~~~vlllD 667 (900)
.++|+||||||||+|+++|+..+. .+++.+++..+.... .+... .+.+.+.......+++++|
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMF------------VGVGAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHST------------TTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHH------------hhHHHHHHHHHHHHHHhcCCcEEehh
Confidence 499999999999999999999884 478888887653211 11110 1122333333445899999
Q ss_pred cccccC--------------HHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHH
Q 046258 668 EVEKAH--------------ISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 668 Eidk~~--------------~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 733 (900)
||+.+. ....+.++..|+.|. .-..+++++++|.+
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~---------~~~~~i~~a~t~~p---------------------- 188 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE---------KDTAIVVMAATNRP---------------------- 188 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHHHHTTCC---------TTCCEEEEEEESCT----------------------
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC---------CCCCEEEEEecCCc----------------------
Confidence 998652 123455666665432 12346788888874
Q ss_pred HHHHhcccHHHHh--cccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH-HHHHHHcCCCCCCCchHHHH
Q 046258 734 QEVRKHFRPELLN--RLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAA-LDIVLAESYDPIYGARPIRR 810 (900)
Q Consensus 734 ~~~~~~~~~~ll~--R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~g~R~L~~ 810 (900)
..++++++. ||+..+.|.+++.++..+|++.++. + +.+++++ +..|+ +.|+++ ..|+|++
T Consensus 189 ----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~---------~--~~~~~~~~~~~la-~~~~G~-~~~dl~~ 251 (278)
T 1iy2_A 189 ----DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---------G--KPLAEDVDLALLA-KRTPGF-VGADLEN 251 (278)
T ss_dssp ----TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT---------T--SCBCTTCCHHHHH-HTCTTC-CHHHHHH
T ss_pred ----hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc---------c--CCCCcccCHHHHH-HHcCCC-CHHHHHH
Confidence 347889986 8999999999999999999886543 1 3444444 55565 457655 3489999
Q ss_pred HHHHHHHHH
Q 046258 811 WLEKKVVTE 819 (900)
Q Consensus 811 ~i~~~i~~~ 819 (900)
+++++....
T Consensus 252 l~~~a~~~a 260 (278)
T 1iy2_A 252 LLNEAALLA 260 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776544
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=1.1e-11 Score=139.19 Aligned_cols=206 Identities=14% Similarity=0.151 Sum_probs=138.9
Q ss_pred CCCCCchHHHHHHHHHHcc----CCCC--CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh----
Q 046258 179 DPVIGRDEEIRRVVRILSR----RTKN--NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA---- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~----~~~~--~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~---- 248 (900)
+.++||+.+++++...+.. ..+. +++|+||||||||++++.++..+.... +..++.++|.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 5699999999999998875 3344 799999999999999999999884431 35689999865321
Q ss_pred --------ccc--ccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh---c---CcEEE
Q 046258 249 --------GAK--YRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA---R---GQLRC 311 (900)
Q Consensus 249 --------g~~--~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~---g~irv 311 (900)
+.. ..+ .....+..+...+...+++.||||||+|.+. .+..+.|..++. . ..+.+
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------hHHHHHHHHHHHhCCCCCcCCEEE
Confidence 000 011 1223333444444445557899999999882 234445655553 2 57889
Q ss_pred EEecCHHHHHHHhhccHHHHcccc--eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhcc---CCC
Q 046258 312 IGATTLEEYRKYVEKDAAFERRFQ--QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYIT---GRH 386 (900)
Q Consensus 312 I~att~~~~~~~~~~d~al~~Rf~--~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~---~~~ 386 (900)
|++++....... .++.+.+||. .+.++.++.++..++++....... ....++++++..++..+.+... ...
T Consensus 163 I~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 163 VIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp EEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred EEEECCchHHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 988865543332 5788888887 477888888888888877665421 1336889999999888843210 023
Q ss_pred ChhhHHHHHHHHHHHh
Q 046258 387 LPDKAIDLVDEACANV 402 (900)
Q Consensus 387 ~p~~a~~Lld~a~a~~ 402 (900)
.|..+..++..++...
T Consensus 239 ~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 239 DARLAIDILYRSAYAA 254 (389)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4667888888776544
No 151
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.35 E-value=5e-12 Score=143.71 Aligned_cols=204 Identities=16% Similarity=0.229 Sum_probs=127.9
Q ss_pred CCCCCC-CchH--HHHHHHHHHccCC-CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccc
Q 046258 177 KLDPVI-GRDE--EIRRVVRILSRRT-KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKY 252 (900)
Q Consensus 177 ~~~~~i-G~~~--~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~ 252 (900)
+|+.++ |.+. ....+..+..... .++++|+||||||||++|++|++.+... .| +.+++++++..+.. .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~----~~~v~~v~~~~~~~--~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EP----DLRVMYITSEKFLN--DL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CC----SSCEEEEEHHHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CC----CCeEEEeeHHHHHH--HH
Confidence 456666 6443 4444555554433 6789999999999999999999988543 12 45589999887632 11
Q ss_pred cchHHHHHHHHHHHHHHcC-CCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHH
Q 046258 253 RGEFEERLKAVLKEVEEAE-GKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFE 331 (900)
Q Consensus 253 ~g~~~~~l~~~~~~~~~~~-~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~ 331 (900)
.+.+.......+. .... .+.||||||+|.+.+... ....+...+....+.|...+|++.+.... +...++.+.
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~vL~IDEi~~l~~~~~--~q~~l~~~l~~l~~~~~~iIitt~~~~~~--l~~l~~~L~ 249 (440)
T 2z4s_A 176 VDSMKEGKLNEFR--EKYRKKVDILLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQK--LSEFQDRLV 249 (440)
T ss_dssp HHHHHTTCHHHHH--HHHTTTCSEEEEECGGGGSSCHH--HHHHHHHHHHHHHTTTCEEEEEESSCGGG--CSSCCHHHH
T ss_pred HHHHHcccHHHHH--HHhcCCCCEEEEeCcccccCChH--HHHHHHHHHHHHHHCCCeEEEEECCCHHH--HHHHHHHHH
Confidence 1111110000111 1112 466899999999864211 12233344444455665555554443221 122678999
Q ss_pred cccc---eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhh
Q 046258 332 RRFQ---QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVR 403 (900)
Q Consensus 332 ~Rf~---~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~ 403 (900)
+||. .+.+..|+.+++.++++..... .++.++++++..++..+.+ .+..+..+++.+++...
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~g------n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDD------NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCS------CHHHHHHHHHHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHH
Confidence 9994 5788999999999999877664 4677899999988876632 34567777777776554
No 152
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=3.9e-12 Score=136.94 Aligned_cols=145 Identities=15% Similarity=0.234 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC---CCCceeEecccccccccccccccC
Q 046258 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD---DENLLVRIDMSEYMEQHSVSRLIG 638 (900)
Q Consensus 562 g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~---~~~~~i~i~~~~~~~~~~~~~l~G 638 (900)
||+++++.+.+.++.. + ..++||+||||+|||++|+++++.+.. ....+..++.+.
T Consensus 1 g~~~~~~~L~~~i~~~-------~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------E--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTC-------S--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCC-------C--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 5667777788877543 2 237999999999999999999986421 122344444321
Q ss_pred CCCCCcccccccchhHHHHhCC----CeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHH
Q 046258 639 APPGYVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEH 714 (900)
Q Consensus 639 ~~~g~~g~~~~~~l~~~~~~~~----~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~ 714 (900)
...+.+..+.+.+.+...| +.|++|||+|.+....+|.|++.||+ ...+++||++||.
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~---- 121 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRR---- 121 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESC----
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECC----
Confidence 0122222233444444333 58999999999999999999999997 3367889988876
Q ss_pred HhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 715 LLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
...+.|.+.+| ++.|.|++.+++.+++...+
T Consensus 122 ----------------------~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 122 ----------------------WHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----------------------GGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ----------------------hHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 35688999999 89999999999999887765
No 153
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.34 E-value=2.9e-12 Score=141.72 Aligned_cols=210 Identities=20% Similarity=0.272 Sum_probs=122.2
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcC----CCCCCCC------------------
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRG----DVPSNLA------------------ 234 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~----~~p~~l~------------------ 234 (900)
+|+.++|++..++.+...+......++||+||||||||++|+++|+.+.+. ..|....
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIR 101 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEE
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcccccc
Confidence 466799999876665444444456689999999999999999999987431 1110000
Q ss_pred -CcEEEEEechhh---hhcccccchHHHHHHHH-----HHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh
Q 046258 235 -DVRLIALDMGAL---VAGAKYRGEFEERLKAV-----LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA 305 (900)
Q Consensus 235 -~~~~~~~~~~~l---~~g~~~~g~~~~~l~~~-----~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~ 305 (900)
+.+++.+..+.. +.|.. .+...+..- .+.+..+. +.||||||++.+.+. ..+.|+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~g~~---~~~~~~~~~~~~~~~g~~~~a~-~~vl~iDEi~~l~~~--------~~~~Ll~~le 169 (350)
T 1g8p_A 102 KPTPVVDLPLGVSEDRVVGAL---DIERAISKGEKAFEPGLLARAN-RGYLYIDECNLLEDH--------IVDLLLDVAQ 169 (350)
T ss_dssp ECCCEEEECTTCCHHHHHCEE---CHHHHHHHCGGGEECCHHHHHT-TEEEEETTGGGSCHH--------HHHHHHHHHH
T ss_pred CCCcccccCCCcchhhheeec---hhhhhhcCCceeecCceeeecC-CCEEEEeChhhCCHH--------HHHHHHHHHh
Confidence 012333222110 11110 001100000 01112223 557999999988653 3447777776
Q ss_pred cC---------------cEEEEEecCHHHHHHHhhccHHHHcccce-eeecCC-ChHHHHHHHHHHHH------------
Q 046258 306 RG---------------QLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEP-SVPDTVSILRGLKE------------ 356 (900)
Q Consensus 306 ~g---------------~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P-~~~e~~~ilr~l~~------------ 356 (900)
.+ .+++|+++|+.+ ...+++|.+||.. +.++.| +.+++..|++....
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 245 (350)
T 1g8p_A 170 SGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEW 245 (350)
T ss_dssp HSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhcccc
Confidence 54 688999998633 1368999999986 788877 45556577755211
Q ss_pred ---------HH----hcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHhhh
Q 046258 357 ---------KY----EGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRV 404 (900)
Q Consensus 357 ---------~~----~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~~~~ 404 (900)
+. ....++.++++++..+..++.+.-. .-+..+..+++.+.+...+
T Consensus 246 ~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 246 RPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRGELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHHH
Confidence 00 1123456888888888887744311 0245666777766655443
No 154
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.33 E-value=1.3e-11 Score=137.86 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=70.2
Q ss_pred CeEEEEcchhhhhhCCCC-CChh---hHHHhHhhhhhcC------------cEEEEEec-----CHHHHHHHhhccHHHH
Q 046258 273 KVILFIDEIHLVLGAGRT-EGSM---DAANLFKPMLARG------------QLRCIGAT-----TLEEYRKYVEKDAAFE 331 (900)
Q Consensus 273 ~~iL~iDEi~~l~~~~~~-~~~~---~~~~~L~~~l~~g------------~irvI~at-----t~~~~~~~~~~d~al~ 331 (900)
..|||+||+|.+...+.+ .++. .+.+.|+++++.. .+.+|+++ ++.+ ..|.|.
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d------lipel~ 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD------LIPELQ 324 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG------SCHHHH
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh------cchHHh
Confidence 346999999999865432 2221 1345888888743 46688887 4332 458999
Q ss_pred cccce-eeecCCChHHHHHHHH----HHHHHHhccc---C--cccChhHHHHHHHHh
Q 046258 332 RRFQQ-VYVAEPSVPDTVSILR----GLKEKYEGHH---G--VRIQDRALVVAAQLS 378 (900)
Q Consensus 332 ~Rf~~-i~i~~P~~~e~~~ilr----~l~~~~~~~~---~--v~i~~eal~~l~~~s 378 (900)
.||.. |.++.++.++...|+. .+..+|...+ + +.++++++..++..+
T Consensus 325 ~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a 381 (444)
T 1g41_A 325 GRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 381 (444)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred cccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHH
Confidence 99997 7888889999999983 3555554322 3 458999999998865
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.32 E-value=2.2e-11 Score=133.51 Aligned_cols=185 Identities=25% Similarity=0.324 Sum_probs=125.8
Q ss_pred CCCCCCCCchHHHHHHHHHHcc-----CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 176 GKLDPVIGRDEEIRRVVRILSR-----RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~-----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
..++.++|++..++.+...+.. ....+++|+||||+||||+++.|+..+ ++++...+...+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTSGPVLVK-- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEETTTCCS--
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEechHhcC--
Confidence 4566789998888877766643 234789999999999999999999998 44455544332211
Q ss_pred cccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--------------------cEE
Q 046258 251 KYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--------------------QLR 310 (900)
Q Consensus 251 ~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------------~ir 310 (900)
+ ..+..++ .....+.|+||||+|.+.+. ..+.|...++.. .+.
T Consensus 90 ---~---~~l~~~~---~~~~~~~v~~iDE~~~l~~~--------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 ---Q---GDMAAIL---TSLERGDVLFIDEIHRLNKA--------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ---H---HHHHHHH---HHCCTTCEEEEETGGGCCHH--------HHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ---H---HHHHHHH---HHccCCCEEEEcchhhcCHH--------HHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1 1122222 22233568999999998642 222333333221 256
Q ss_pred EEEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChh
Q 046258 311 CIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPD 389 (900)
Q Consensus 311 vI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~ 389 (900)
+++++++.. ..++.+++||.. +.++.|+.++..++++..... .++.++++++..++..+ +..|.
T Consensus 153 li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~------~G~~R 217 (334)
T 1in4_A 153 LVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRS------RGTPR 217 (334)
T ss_dssp EEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTS------TTCHH
T ss_pred EEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhc------CCChH
Confidence 777776653 378999999975 668888999999999887765 46778899988888776 34566
Q ss_pred hHHHHHHHHHHHhhh
Q 046258 390 KAIDLVDEACANVRV 404 (900)
Q Consensus 390 ~a~~Lld~a~a~~~~ 404 (900)
.+..+++.+......
T Consensus 218 ~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 218 IAIRLTKRVRDMLTV 232 (334)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877655443
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.32 E-value=7.2e-13 Score=132.67 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=101.6
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC-------CCCceeEeccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD-------DENLLVRIDMSEYMEQH 631 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~~~~ 631 (900)
.++|++..++.+...+.. ....+++|+||||||||++|+.+++.+.. ...+++.++|+.+....
T Consensus 23 ~~~g~~~~~~~l~~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA 93 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTT
T ss_pred ccccchHHHHHHHHHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccC
Confidence 366777777777776632 12237999999999999999999999854 24577888876543210
Q ss_pred ccccccCCCCCCcccccccchhHH---H-HhCCCeEEEEccccccC--------HHHHHHHHHHhhCCeeecCCCceeec
Q 046258 632 SVSRLIGAPPGYVGHEEGGQLTEA---V-RRRPYSVVLFDEVEKAH--------ISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~~~~l~~~---~-~~~~~~vlllDEidk~~--------~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.|... ..+... + +...+.||+|||++.+. ..+++.|..+++.
T Consensus 94 ----------~~~~~~~-~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~------------- 149 (195)
T 1jbk_A 94 ----------KYRGEFE-ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR------------- 149 (195)
T ss_dssp ----------CSHHHHH-HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-------------
T ss_pred ----------CccccHH-HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-------------
Confidence 1111110 112222 2 23456799999999995 3457788888875
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCHHHHHHHH
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVA 766 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~ 766 (900)
.++.+|+++|.....- ...+++.|++||+ .+.|.+++.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~---------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQ---------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHH---------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHH---------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 3566888887531000 1246899999996 7899999999987764
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=9e-12 Score=137.22 Aligned_cols=187 Identities=17% Similarity=0.261 Sum_probs=132.4
Q ss_pred CCCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccch
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~ 255 (900)
..++.++|++..++.+...+.....+|++|+||||||||++|+++++.+..... ...+..+|++.. .|
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~------~~- 89 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASDD------RG- 89 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTSC------CS-
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCccc------cc-
Confidence 467779999999999999888876667999999999999999999999853221 234677766542 12
Q ss_pred HHHHHHHHHHHHHHc-----CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhc--CcEEEEEecCHHHHHHHhhccH
Q 046258 256 FEERLKAVLKEVEEA-----EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLAR--GQLRCIGATTLEEYRKYVEKDA 328 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~-----~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--g~irvI~att~~~~~~~~~~d~ 328 (900)
...++..+..+.+. .+..|++|||+|.+.. ++.+.|+.+++. ...++|.+++... ...+
T Consensus 90 -~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~n~~~-----~i~~ 155 (340)
T 1sxj_C 90 -IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------AAQNALRRVIERYTKNTRFCVLANYAH-----KLTP 155 (340)
T ss_dssp -HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-----GSCH
T ss_pred -HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhcCCCCeEEEEEecCcc-----ccch
Confidence 12334444444321 2367899999998854 345577777764 4577777776543 3689
Q ss_pred HHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 329 AFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 329 al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
.+.+|+..+.+..++.++...++..+... .++.++++++..++.++.+. +..+..+++.+
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G~------~r~~~~~l~~~ 215 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNGD------MRRVLNVLQSC 215 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTTC------HHHHHHHTTTT
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 99999998888888888877777666643 46778999999999888443 33555555443
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=8.9e-12 Score=138.13 Aligned_cols=198 Identities=17% Similarity=0.196 Sum_probs=130.8
Q ss_pred CCCCCCCCchHHHHHHHHHH-ccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCC-CCCC------------------C
Q 046258 176 GKLDPVIGRDEEIRRVVRIL-SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVP-SNLA------------------D 235 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l-~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p-~~l~------------------~ 235 (900)
.++++++|++..++.+...+ ......+++|+||+|+||||+++.++..+...... ..+. .
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 35677999999999999988 66555669999999999999999999976332110 0000 0
Q ss_pred cEEEEEechhhhhcccccchHHHHHHHHHHHHHH-------------cCCCeEEEEcchhhhhhCCCCCChhhHHHhHhh
Q 046258 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEE-------------AEGKVILFIDEIHLVLGAGRTEGSMDAANLFKP 302 (900)
Q Consensus 236 ~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~-------------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~ 302 (900)
..++.++.+.. +.. . ...++..+..+.. ..++.|++|||++.|.. ...+.|..
T Consensus 91 ~~~~~~~~~~~--~~~-~---~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~--------~~~~~L~~ 156 (354)
T 1sxj_E 91 PYHLEITPSDM--GNN-D---RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--------DAQAALRR 156 (354)
T ss_dssp SSEEEECCC------C-C---HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH--------HHHHHHHH
T ss_pred cceEEecHhhc--CCc-c---hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--------HHHHHHHH
Confidence 11233332211 100 0 0123333333221 12466899999988633 34456666
Q ss_pred hhhc--CcEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccC-hhHHHHHHHHhh
Q 046258 303 MLAR--GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQ-DRALVVAAQLSA 379 (900)
Q Consensus 303 ~l~~--g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~-~eal~~l~~~s~ 379 (900)
.++. ...++|.+|+... ...+.+.+|+..+.+..|+.++...+++.+... .++.++ ++++..++..+.
T Consensus 157 ~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~i~~~~~ 227 (354)
T 1sxj_E 157 TMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDILKRIAQASN 227 (354)
T ss_dssp HHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHHHHHHHHHT
T ss_pred HHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHcC
Confidence 6653 3577777775433 257889999988999999999999988877765 467889 999999998884
Q ss_pred hhccCCCChhhHHHHHHHHHHHh
Q 046258 380 RYITGRHLPDKAIDLVDEACANV 402 (900)
Q Consensus 380 ~~~~~~~~p~~a~~Lld~a~a~~ 402 (900)
+. +..+..+++.++...
T Consensus 228 G~------~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 228 GN------LRVSLLMLESMALNN 244 (354)
T ss_dssp TC------HHHHHHHHTHHHHTT
T ss_pred CC------HHHHHHHHHHHHHhC
Confidence 44 558888888777543
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.30 E-value=6.6e-12 Score=154.90 Aligned_cols=181 Identities=22% Similarity=0.287 Sum_probs=123.0
Q ss_pred CCCCchHHHHHHHHHHccC---------CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcc
Q 046258 180 PVIGRDEEIRRVVRILSRR---------TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGA 250 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~ 250 (900)
.++|++..++.+...+.+. +..++||+||||||||++|++||..+.+.+.| |+.+||+.+....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~-------~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA-------MIRIDMTEYMEKH 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGG-------EEEECTTTCCSSG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCc-------EEEEechhccchh
Confidence 4799999999998877641 11378999999999999999999999765444 9999998764321
Q ss_pred c----------ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-------------
Q 046258 251 K----------YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG------------- 307 (900)
Q Consensus 251 ~----------~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g------------- 307 (900)
. |.|.-. ...+.+.+.... +.||||||++.+. .++.+.|+++++.|
T Consensus 632 ~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~-~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRP-YSVILFDEIEKAH--------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGGC----------------CHHHHHHHCS-SEEEEESSGGGSC--------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHHcCCCCCCcCccc--cchHHHHHHhCC-CeEEEEecccccC--------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 0 111111 012223333333 6789999998764 35677999999876
Q ss_pred cEEEEEecCHHH---------------HHHHh------hccHHHHcccce-eeecCCChHHHHHHHHHHHHHHhccc---
Q 046258 308 QLRCIGATTLEE---------------YRKYV------EKDAAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHH--- 362 (900)
Q Consensus 308 ~irvI~att~~~---------------~~~~~------~~d~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~--- 362 (900)
.+.+|++||... ....+ ...|.|.+||.. +.+.+|+.++...|++.+..++....
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 345899988521 11111 236889999965 55666788888888877766554322
Q ss_pred --CcccChhHHHHHHHHh
Q 046258 363 --GVRIQDRALVVAAQLS 378 (900)
Q Consensus 363 --~v~i~~eal~~l~~~s 378 (900)
.+.++++++..++..+
T Consensus 781 ~~~~~~~~~a~~~L~~~~ 798 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERG 798 (854)
T ss_dssp TCEEEECHHHHHHHHHHH
T ss_pred CceEEECHHHHHHHHHcC
Confidence 3468999999888865
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=6.4e-12 Score=140.74 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=138.2
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCC---CCceeEecccccccccc---
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD---ENLLVRIDMSEYMEQHS--- 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~---~~~~i~i~~~~~~~~~~--- 632 (900)
.++|++..++.+...+.....+ .+..+++|+||+|||||++++.+++.+... ..+++.++|........
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~-----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGT-----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3677777777777776543221 122369999999999999999999988543 45789999876432211
Q ss_pred -cccccCCCCCCcccccc---cchhHHHHhC-CCeEEEEccccccC----HHHHHHHHHHhhCCeeecCCCceeecCCeE
Q 046258 633 -VSRLIGAPPGYVGHEEG---GQLTEAVRRR-PYSVVLFDEVEKAH----ISVFNTLLQVLDDGRLTDGQGRTVDFRNTV 703 (900)
Q Consensus 633 -~~~l~G~~~g~~g~~~~---~~l~~~~~~~-~~~vlllDEidk~~----~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~ 703 (900)
+..-+|.+.+..|.... ..+...+... ...||+|||++.+. .+++..|+..+++. ...++.
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~~ 165 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKIS 165 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--EE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeEE
Confidence 11112332222222211 1122333433 36899999999875 56777888888642 124677
Q ss_pred EEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccc-eeecCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 046258 704 IIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDE-IVVFDPLSHEQLRKVARLQMKDVAIRLAERGV 782 (900)
Q Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~-~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~ 782 (900)
+|++||...- ...+.+.+.+||.. .+.|+||+.+++.+++...+.. ...
T Consensus 166 ~I~~~~~~~~-----------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-------~~~ 215 (386)
T 2qby_A 166 FIGITNDVKF-----------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-------AFK 215 (386)
T ss_dssp EEEEESCGGG-----------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-------HBC
T ss_pred EEEEECCCCh-----------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-------hcc
Confidence 8888876320 24467788889864 8999999999999999887652 111
Q ss_pred ccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHH
Q 046258 783 ALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVV 817 (900)
Q Consensus 783 ~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~ 817 (900)
...+++++++++....+......|.+.++++.+..
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35789999999988765422227777777665543
No 161
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.27 E-value=1.4e-11 Score=136.00 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=132.1
Q ss_pred cChhHHHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHH-HHHhcCCCCceeEecccccccc
Q 046258 552 LGQNEKERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKAL-AEQLFDDENLLVRIDMSEYMEQ 630 (900)
Q Consensus 552 ~~~~~~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~l-a~~l~~~~~~~i~i~~~~~~~~ 630 (900)
+..+... ++|++.+ ..++....+|.....+...|+||.|+||| ||.+|+++ ++.+.+ ..|+...++... .
T Consensus 208 l~~sIap-I~G~e~v----K~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~~-g 278 (506)
T 3f8t_A 208 FARAIAP-LPGAEEV----GKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTELT-D 278 (506)
T ss_dssp HHHHHCC-STTCHHH----HHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCHH-H
T ss_pred HHHHhcc-cCCCHHH----HHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCcc-C
Confidence 3344445 8888764 34444444443222233348999999999 99999999 887643 112222221100 0
Q ss_pred cccccccCCCCCCcccccccchhHHHHhCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 710 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~ 710 (900)
...+ +.+. .| . ..-.+.+..+.++|+|+|||+++++..|..|+++|++++++-. |. .-..++.+|+|+|.
T Consensus 279 Lt~s-~r~~-tG-~-----~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP 348 (506)
T 3f8t_A 279 LTAV-LKED-RG-W-----ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINP 348 (506)
T ss_dssp HSEE-EEES-SS-E-----EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECC
T ss_pred ceEE-EEcC-CC-c-----ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCc
Confidence 0011 1111 11 1 1112345556789999999999999999999999999999866 65 33357899999998
Q ss_pred CcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCCH-H-HHH---HHH-HHHHHHHHHHHHhcCCcc
Q 046258 711 GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSH-E-QLR---KVA-RLQMKDVAIRLAERGVAL 784 (900)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~~-e-~~~---~I~-~~~l~~~~~~~~~~~~~~ 784 (900)
.. .... ..+ + -...+++++++|||.++....+.. + |.. ..+ ...+.++....++..+.+
T Consensus 349 ~~-~yd~----~~s-------~---~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p 413 (506)
T 3f8t_A 349 GE-QWPS----DPP-------I---ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAP 413 (506)
T ss_dssp CC---CC----SCG-------G---GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCC
T ss_pred cc-ccCC----CCC-------c---cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCc
Confidence 64 1100 000 0 034789999999998776666332 2 111 111 123333333333234568
Q ss_pred ccCHHHHHHHHHcC---------------CCCCCCchHHHHHHH
Q 046258 785 AVTDAALDIVLAES---------------YDPIYGARPIRRWLE 813 (900)
Q Consensus 785 ~~~~~a~~~l~~~~---------------~~~~~g~R~L~~~i~ 813 (900)
.+++++.++|.++. ..-..+.|.+..+++
T Consensus 414 ~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiR 457 (506)
T 3f8t_A 414 ELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVER 457 (506)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHH
Confidence 89999988887531 111234688887774
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.26 E-value=5e-10 Score=149.43 Aligned_cols=134 Identities=21% Similarity=0.245 Sum_probs=90.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCC---CceeEecccccccccccccccCCCCCCcccccccchhHHHHhC-------
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDE---NLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR------- 659 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~---~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~------- 659 (900)
.++++||||+|||++-+.|++++..-. .....+|-..++ ...|+|.-..-...=.-|.++..+|+.
T Consensus 908 GvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait----~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~ 983 (3245)
T 3vkg_A 908 GVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAIT----KDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGE 983 (3245)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSC----HHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCc----hhhhceeecCCCCeeeccHHHHHHHHHHhcccCC
Confidence 599999999999999999999985421 123445554432 245777421111111126777776642
Q ss_pred --CCeEEEEccccccCHHHHHHHHHHhhCC-eeecCCCceeecC-CeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 660 --PYSVVLFDEVEKAHISVFNTLLQVLDDG-RLTDGQGRTVDFR-NTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 660 --~~~vlllDEidk~~~~~~~~Ll~~ld~g-~~~d~~g~~~~~~-~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
...+|+|| .-.++...+.|..+||+. .++-.+|..+.+. ++.+||-...
T Consensus 984 ~~~~~WIvfD--GpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~d------------------------- 1036 (3245)
T 3vkg_A 984 STKRHWIIFD--GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQD------------------------- 1036 (3245)
T ss_dssp GGEEEEEEEE--SCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESC-------------------------
T ss_pred CCCceEEEEC--CCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEecc-------------------------
Confidence 13599999 456788899999999855 5677888877775 7888885532
Q ss_pred HHhcccHHHHhcccceeecCC
Q 046258 736 VRKHFRPELLNRLDEIVVFDP 756 (900)
Q Consensus 736 ~~~~~~~~ll~R~~~~i~f~p 756 (900)
...-+|+-.+|| -+|.+.|
T Consensus 1037 -L~~ASPATVSRc-GmVy~~~ 1055 (3245)
T 3vkg_A 1037 -LKYATLATISRC-GMVWFSE 1055 (3245)
T ss_dssp -CTTCCHHHHHTS-EEEECCT
T ss_pred -ccccChhhheee-eEEEEcc
Confidence 244589999999 5666665
No 163
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.19 E-value=1.7e-11 Score=122.09 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=95.0
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC-------CCCceeEeccccccccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD-------DENLLVRIDMSEYMEQH 631 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~-------~~~~~i~i~~~~~~~~~ 631 (900)
.++|++..++.+.+.+.. ....+++|+||||||||++|+.+++.+.. ...+++.++++.+....
T Consensus 23 ~~~g~~~~~~~l~~~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGA 93 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHC
T ss_pred hhhcchHHHHHHHHHHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCC
Confidence 367777777777776632 12237999999999999999999999854 24567777776543211
Q ss_pred ccccccCCCCCCccccc--ccchhHHHHhC-CCeEEEEccccccC---------HHHHHHHHHHhhCCeeecCCCceeec
Q 046258 632 SVSRLIGAPPGYVGHEE--GGQLTEAVRRR-PYSVVLFDEVEKAH---------ISVFNTLLQVLDDGRLTDGQGRTVDF 699 (900)
Q Consensus 632 ~~~~l~G~~~g~~g~~~--~~~l~~~~~~~-~~~vlllDEidk~~---------~~~~~~Ll~~ld~g~~~d~~g~~~~~ 699 (900)
.+.|... ...+...+... .+.||+|||++.+. .++++.|...++.
T Consensus 94 ----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~------------- 150 (187)
T 2p65_A 94 ----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR------------- 150 (187)
T ss_dssp ----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-------------
T ss_pred ----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-------------
Confidence 0111100 01122223333 45799999999997 5678888888875
Q ss_pred CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHHhcccceeecCCCC
Q 046258 700 RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS 758 (900)
Q Consensus 700 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~R~~~~i~f~pl~ 758 (900)
.++++|+++|...... ...+++.|++||+ .+.+.+++
T Consensus 151 ~~~~ii~~~~~~~~~~---------------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQ---------------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHH---------------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred CCeeEEEecCHHHHHH---------------------HHhccHHHHHhcC-cccCCCCC
Confidence 3567899888532100 1246899999996 57777654
No 164
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.15 E-value=8e-11 Score=134.60 Aligned_cols=201 Identities=14% Similarity=0.074 Sum_probs=116.9
Q ss_pred CCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh----hhhcccccch
Q 046258 180 PVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA----LVAGAKYRGE 255 (900)
Q Consensus 180 ~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~----l~~g~~~~g~ 255 (900)
.++|++..++.+...+.. +.|+||+||||||||++|++||..+.. +..|..++|.. -+.|.. .+.
T Consensus 23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G~~-~~~ 91 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFGPL-SIQ 91 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHCCB-C--
T ss_pred hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcCcc-cHH
Confidence 389999999998877764 459999999999999999999987722 23366666542 122211 111
Q ss_pred HHHHHHHHHHHHHHcCC-----CeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCcE------------EEEEecCHH
Q 046258 256 FEERLKAVLKEVEEAEG-----KVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQL------------RCIGATTLE 318 (900)
Q Consensus 256 ~~~~l~~~~~~~~~~~~-----~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i------------rvI~att~~ 318 (900)
... ..+.+..... +.|||||||+.+.+ ...+.|+.+|+.+.+ .+|++||+.
T Consensus 92 ~~~----~~g~~~~~~~g~l~~~~IL~IDEI~r~~~--------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~l 159 (500)
T 3nbx_X 92 ALK----DEGRYERLTSGYLPEAEIVFLDEIWKAGP--------AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNEL 159 (500)
T ss_dssp ------------CBCCTTSGGGCSEEEEESGGGCCH--------HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSC
T ss_pred HHh----hchhHHhhhccCCCcceeeeHHhHhhhcH--------HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccC
Confidence 000 0111111111 33799999976643 344588888875432 246777632
Q ss_pred HHHHHhhccHHHHcccce-eeecCCCh-HHHHHHHHHHHHH-------------------HhcccCcccChhHHHHHHHH
Q 046258 319 EYRKYVEKDAAFERRFQQ-VYVAEPSV-PDTVSILRGLKEK-------------------YEGHHGVRIQDRALVVAAQL 377 (900)
Q Consensus 319 ~~~~~~~~d~al~~Rf~~-i~i~~P~~-~e~~~ilr~l~~~-------------------~~~~~~v~i~~eal~~l~~~ 377 (900)
+- .....+++.+||.. +.++.|+. +++.+|++..... .....++.++++++.+++.+
T Consensus 160 pe--~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l 237 (500)
T 3nbx_X 160 PE--ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFML 237 (500)
T ss_dssp CC--TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred CC--ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHH
Confidence 10 00123589999965 67777876 5667777543211 01123566888888888877
Q ss_pred hhhhcc----CCCChhhHHHHHHHHHHHhhhh
Q 046258 378 SARYIT----GRHLPDKAIDLVDEACANVRVQ 405 (900)
Q Consensus 378 s~~~~~----~~~~p~~a~~Lld~a~a~~~~~ 405 (900)
....-. ...-|.....++..+.+...+.
T Consensus 238 ~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 238 RQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 632110 1123445556666665555544
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.15 E-value=2.7e-10 Score=134.97 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=128.5
Q ss_pred CCCCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh--------
Q 046258 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-------- 248 (900)
Q Consensus 177 ~~~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------- 248 (900)
.++.++|++..++.+...+... .+++|+||||||||++|++||..+..... ..+.+++.....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~-------~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETL-------EDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSC-------EEEEEECCTTCTTSCEEEEE
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccC-------CeEEEeCCcccccCCcEEEE
Confidence 4456999999998888777754 59999999999999999999998743221 112221111000
Q ss_pred ----------------------------------------------cccccchHHHHHHHH-------------------
Q 046258 249 ----------------------------------------------GAKYRGEFEERLKAV------------------- 263 (900)
Q Consensus 249 ----------------------------------------------g~~~~g~~~~~l~~~------------------- 263 (900)
+.............+
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 000000000000011
Q ss_pred ----HHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-----------------------cEEEEEecC
Q 046258 264 ----LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-----------------------QLRCIGATT 316 (900)
Q Consensus 264 ----~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------------------~irvI~att 316 (900)
.+.+..++++ +|||||++.|.+. ..+.|+++|+.+ .+++|++||
T Consensus 190 ~~i~~g~~~~a~~g-vL~LDEi~~l~~~--------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn 260 (604)
T 3k1j_A 190 ERVEPGMIHRAHKG-VLFIDEIATLSLK--------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGN 260 (604)
T ss_dssp GGEECCHHHHTTTS-EEEETTGGGSCHH--------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEEC
T ss_pred ccccCceeeecCCC-EEEEechhhCCHH--------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecC
Confidence 1123334544 5999999998543 445788777633 467999999
Q ss_pred HHHHHHHhhccHHHHcccce--eeecCC-----ChHHHHHHHHHHHHHHhcc-cCcccChhHHHHHHHHhhhhccCCC--
Q 046258 317 LEEYRKYVEKDAAFERRFQQ--VYVAEP-----SVPDTVSILRGLKEKYEGH-HGVRIQDRALVVAAQLSARYITGRH-- 386 (900)
Q Consensus 317 ~~~~~~~~~~d~al~~Rf~~--i~i~~P-----~~~e~~~ilr~l~~~~~~~-~~v~i~~eal~~l~~~s~~~~~~~~-- 386 (900)
+.... ..++.|.+||.. +.++.+ .......+++.+...+... ....++++++..+...+.|+...+.
T Consensus 261 ~~~~~---~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l 337 (604)
T 3k1j_A 261 LDTVD---KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHL 337 (604)
T ss_dssp HHHHH---HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEE
T ss_pred HHHHh---hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccccc
Confidence 87442 368999999963 333222 3344555666666555432 2346899999999998877766654
Q ss_pred --ChhhHHHHHHHHHHHhhh
Q 046258 387 --LPDKAIDLVDEACANVRV 404 (900)
Q Consensus 387 --~p~~a~~Lld~a~a~~~~ 404 (900)
.+..+..++..+......
T Consensus 338 ~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 338 TLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp ECCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 577777888877665543
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.12 E-value=1.2e-09 Score=123.61 Aligned_cols=213 Identities=17% Similarity=0.177 Sum_probs=132.6
Q ss_pred CCCCCchHHHHHHHHHH-cc------CCCCCeEE--EcCCCCcHHHHHHHHHHHHhcC---CCCCCCCCcEEEEEechhh
Q 046258 179 DPVIGRDEEIRRVVRIL-SR------RTKNNPVL--IGEPGVGKTAVVEGLAQRIVRG---DVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l-~~------~~~~~vlL--~G~~GtGKT~la~~la~~l~~~---~~p~~l~~~~~~~~~~~~l 246 (900)
+.++||+.+++++.+.+ .. ....+++| +||+|||||++++.+++.+... ... +..+++++|...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGL----TVKQAYVNAFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTC----CEEEEEEEGGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCC----ceeEEEEECCCC
Confidence 56999999999999888 42 24457888 9999999999999999887431 001 456888887432
Q ss_pred hh------------ccc--ccc-hHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhh-----c
Q 046258 247 VA------------GAK--YRG-EFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLA-----R 306 (900)
Q Consensus 247 ~~------------g~~--~~g-~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----~ 306 (900)
.. |.. ..+ .....+..+...+...++++||+|||+|.+..... .+.+....|...+. .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTT
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCC
Confidence 10 100 011 12222333444444445588999999999975311 12233333333332 3
Q ss_pred --CcEEEEEecCHHHHHHHhhcc---HHHHcccce-eeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhh
Q 046258 307 --GQLRCIGATTLEEYRKYVEKD---AAFERRFQQ-VYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSAR 380 (900)
Q Consensus 307 --g~irvI~att~~~~~~~~~~d---~al~~Rf~~-i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~ 380 (900)
..+.+|++|+....... .+ +.+.++|.. +.+..++.++..++++....... ....++++++..+...+.+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~--l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSY--MREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGE 251 (412)
T ss_dssp SCCBEEEEEEEEETHHHHH--HHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCG
T ss_pred CCceEEEEEEeccccHHHH--HhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHH
Confidence 57888888864443222 23 666677754 77777888888888876554321 2234788888888888853
Q ss_pred hccCCCChhhHHHHHHHHHHH
Q 046258 381 YITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 381 ~~~~~~~p~~a~~Lld~a~a~ 401 (900)
..+....|..+..++..++..
T Consensus 252 ~~~~~G~p~~~~~l~~~a~~~ 272 (412)
T 1w5s_A 252 DKGGDGSARRAIVALKMACEM 272 (412)
T ss_dssp GGTSCCCHHHHHHHHHHHHHH
T ss_pred hccCCCcHHHHHHHHHHHHHH
Confidence 322225677777777766543
No 167
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.08 E-value=5.9e-10 Score=122.17 Aligned_cols=182 Identities=19% Similarity=0.243 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHccCCCCC-eEEEcCCCCcHHHHHHHHHHHHhcCCCCCC--C------------CCcEEEEEechhhhh
Q 046258 184 RDEEIRRVVRILSRRTKNN-PVLIGEPGVGKTAVVEGLAQRIVRGDVPSN--L------------ADVRLIALDMGALVA 248 (900)
Q Consensus 184 ~~~~i~~l~~~l~~~~~~~-vlL~G~~GtGKT~la~~la~~l~~~~~p~~--l------------~~~~~~~~~~~~l~~ 248 (900)
+.+.++.+...+......| +||+||+|+|||++|+.+|+.+........ . ....++.++...-
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-- 84 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--
Confidence 4567788888887765555 899999999999999999999854321100 0 0012455543210
Q ss_pred cccccchHHHHHHHHHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHH
Q 046258 249 GAKYRGEFEERLKAVLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKY 323 (900)
Q Consensus 249 g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~ 323 (900)
+ ...+ .+.++.+++.+... ++..|++|||+|.|.. ++.|.|+..++++ .+.+|.+|+...
T Consensus 85 ~-~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~--------~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 85 K-NTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD--------AAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp C-SSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------HHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred C-CCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcCH--------HHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 0 1111 23355555554422 3467899999999853 3567888888754 577777775432
Q ss_pred hhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHH
Q 046258 324 VEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEA 398 (900)
Q Consensus 324 ~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a 398 (900)
...+.+++|+..+.+..|+.++...+++... .++++++..++..+.+ -|..+..+++..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G------~~r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAG------SPGAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTT------CHHHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCC------CHHHHHHHhccc
Confidence 3689999999999998888888777665321 5678888888887743 344666665543
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.00 E-value=9.9e-10 Score=124.14 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=133.2
Q ss_pred HHhcHHHHHHHHHHHH-HHHhcCCCCCCCCCeEEEE--eccCCchHHHHHHHHHHHhcCC------CCceeEeccccccc
Q 046258 559 RLIGLAEAVNAVAESV-LRSRAGLGRPQQPTGSFLF--LGPTGVGKTELAKALAEQLFDD------ENLLVRIDMSEYME 629 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i-~~~~~g~~~~~~p~~~~ll--~Gp~GtGKT~lA~~la~~l~~~------~~~~i~i~~~~~~~ 629 (900)
.++|.+..++.+...+ .....+.. ....++++ +||+|||||+|++.+++.+... ...++.++|.....
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~---~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCC---CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3677777788888887 66543311 12246888 9999999999999999887431 34678888865432
Q ss_pred cccc-cc---ccCCCCCCcccccc---cchhHHHHh-CCCeEEEEccccccC------HHHHHHHHHHhhCCeeecCCCc
Q 046258 630 QHSV-SR---LIGAPPGYVGHEEG---GQLTEAVRR-RPYSVVLFDEVEKAH------ISVFNTLLQVLDDGRLTDGQGR 695 (900)
Q Consensus 630 ~~~~-~~---l~G~~~g~~g~~~~---~~l~~~~~~-~~~~vlllDEidk~~------~~~~~~Ll~~ld~g~~~d~~g~ 695 (900)
.... .. -+|.+....|.... ..+...+.. ....||+|||++.+. .+++..|+..+++...
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~------ 173 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS------ 173 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC------
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc------
Confidence 2111 11 12332211121111 122233332 345789999999874 4777777777764210
Q ss_pred eeec--CCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhccc---HHHHhcccceeecCCCCHHHHHHHHHHHH
Q 046258 696 TVDF--RNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFR---PELLNRLDEIVVFDPLSHEQLRKVARLQM 770 (900)
Q Consensus 696 ~~~~--~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~R~~~~i~f~pl~~e~~~~I~~~~l 770 (900)
+- .++.+|+|||... + ...+. +.+.+|+...+.|.||+.+++.+++...+
T Consensus 174 --~~~~~~v~lI~~~~~~~--~---------------------~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 174 --RDGVNRIGFLLVASDVR--A---------------------LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp --TTSCCBEEEEEEEEETH--H---------------------HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred --CCCCceEEEEEEecccc--H---------------------HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 11 4677888886421 0 12233 66777776669999999999999998776
Q ss_pred HHHHHHHHhcCCccccCHHHHHHHHHcCCC-----CCCCchHHHHHHHHHH
Q 046258 771 KDVAIRLAERGVALAVTDAALDIVLAESYD-----PIYGARPIRRWLEKKV 816 (900)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~g~R~L~~~i~~~i 816 (900)
... +....++++++..+.+.... ++ .|.+..++...+
T Consensus 229 ~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~G~--p~~~~~l~~~a~ 270 (412)
T 1w5s_A 229 ELG-------LRDTVWEPRHLELISDVYGEDKGGDGS--ARRAIVALKMAC 270 (412)
T ss_dssp HHH-------BCTTSCCHHHHHHHHHHHCGGGTSCCC--HHHHHHHHHHHH
T ss_pred Hhc-------CCCCCCChHHHHHHHHHHHHhccCCCc--HHHHHHHHHHHH
Confidence 521 11245889999999877552 44 667777665543
No 169
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.99 E-value=2.2e-10 Score=131.13 Aligned_cols=99 Identities=27% Similarity=0.246 Sum_probs=73.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccc
Q 046258 557 KERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRL 636 (900)
Q Consensus 557 ~~~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l 636 (900)
.+.++|++.+++.+...+.....+.. |..++||+||||||||++|+++|+.+.. ..+|+.++++++..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~~~------- 103 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEVYS------- 103 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGGCC-------
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHHHH-------
Confidence 45689999998888877776655432 3347999999999999999999999964 36899999987643
Q ss_pred cCCCCCCcccccccchhHHHHhC------CCeEEEEccccccCH
Q 046258 637 IGAPPGYVGHEEGGQLTEAVRRR------PYSVVLFDEVEKAHI 674 (900)
Q Consensus 637 ~G~~~g~~g~~~~~~l~~~~~~~------~~~vlllDEidk~~~ 674 (900)
.|+|..+ .+.+.++.+ .++||||||||.+.+
T Consensus 104 -----~~~~~~~--~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 104 -----TEIKKTE--VLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp -----SSSCHHH--HHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred -----HhhhhhH--HHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 2445433 255555543 468999999998753
No 170
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=2.3e-11 Score=142.95 Aligned_cols=205 Identities=15% Similarity=0.156 Sum_probs=111.3
Q ss_pred CCCCCchHHHHHHHHHHccCC-----------CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh
Q 046258 179 DPVIGRDEEIRRVVRILSRRT-----------KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV 247 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~~-----------~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~ 247 (900)
..++|++...+.+...+.... ..|+||+||||||||++|+++|+.+.+...+... ..+++.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~------~~~~~~l~ 368 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK------GSTAAGLT 368 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT------CSTTTTSE
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC------cccccccc
Confidence 348899887777655554432 1289999999999999999999877432221000 01112221
Q ss_pred hcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcCc---------------EEEE
Q 046258 248 AGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQ---------------LRCI 312 (900)
Q Consensus 248 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~---------------irvI 312 (900)
... ..+.+.+......+.+..++ +.||||||++.+.+. ..+.|.++|+.+. +++|
T Consensus 369 ~~~-~~~~~~g~~~~~~G~l~~A~-~gil~IDEid~l~~~--------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 369 AAV-VREKGTGEYYLEAGALVLAD-GGIAVIDEIDKMRDE--------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp EEC-SSGGGTSSCSEEECHHHHHS-SSEECCTTTTCCCSH--------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cee-eeccccccccccCCeeEecC-CCcEEeehhhhCCHh--------HhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 100 00000000000011122334 346999999987543 3347888887543 4688
Q ss_pred EecCHHH--HH------HHhhccHHHHccccee-e-ecCCChHHHHHHHHHHHHHHhc-ccCcccChhHHHHHHHHhhhh
Q 046258 313 GATTLEE--YR------KYVEKDAAFERRFQQV-Y-VAEPSVPDTVSILRGLKEKYEG-HHGVRIQDRALVVAAQLSARY 381 (900)
Q Consensus 313 ~att~~~--~~------~~~~~d~al~~Rf~~i-~-i~~P~~~e~~~ilr~l~~~~~~-~~~v~i~~eal~~l~~~s~~~ 381 (900)
+|+|+.. +. ..+..+++|.+||+.+ . .+.|+.+ ...|.+.+...... .....++.+.+.....++..+
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHh
Confidence 9998752 10 0015788999999753 3 3455544 55666665554321 111235555555555555444
Q ss_pred ccCCCChhhHHHHHHHHHHH
Q 046258 382 ITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 382 ~~~~~~p~~a~~Lld~a~a~ 401 (900)
+.. .+++.+.+++......
T Consensus 518 ~~p-~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 518 VTP-KITSEAKNLITDFFVE 536 (595)
T ss_dssp HCC-CCCCCTHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHHH
Confidence 322 4555666666555443
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=2.3e-09 Score=115.25 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=100.1
Q ss_pred CchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHH
Q 046258 183 GRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKA 262 (900)
Q Consensus 183 G~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~ 262 (900)
|+++.++.+...+.....++.||+||||+|||++|+++++.+..... ....++.++.+.- ..+ .+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~----~~~d~~~l~~~~~-----~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP----KASDVLEIDPEGE-----NIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC----CTTTEEEECCSSS-----CBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc----cCCCEEEEcCCcC-----CCC--HHHHHH
Confidence 56778888888888766667899999999999999999986421100 1234777775421 111 223556
Q ss_pred HHHHHHHc---CCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC--cEEEEEecCHHHHHHHhhccHHHHccccee
Q 046258 263 VLKEVEEA---EGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG--QLRCIGATTLEEYRKYVEKDAAFERRFQQV 337 (900)
Q Consensus 263 ~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--~irvI~att~~~~~~~~~~d~al~~Rf~~i 337 (900)
+++.+... ++..|+||||+|.|.. ++.|.|++.|+++ ..++|.+|+... ...|.+++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt~--------~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMTQ--------QAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBCH--------HHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhCH--------HHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 66655432 2356899999999853 3567899999864 677777765432 367999999 78
Q ss_pred eecCCChHHHHHHHHHHH
Q 046258 338 YVAEPSVPDTVSILRGLK 355 (900)
Q Consensus 338 ~i~~P~~~e~~~ilr~l~ 355 (900)
.+..|+.++....++...
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 888888888777775543
No 172
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.81 E-value=3e-09 Score=105.46 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=68.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc-CCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF-DDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
+++|+||||||||+|+++++..+. ..+..++.+++.++....... +. .. ....+...+. ...+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~------~~-~~~~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MD------EG-KDTKFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HH------HT-CCSHHHHHHH--TCSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hc------Cc-hHHHHHHHhc--CCCEEEEeC
Confidence 699999999999999999999985 334466677776653321100 00 00 0012222222 457999999
Q ss_pred cc--ccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHH
Q 046258 669 VE--KAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEH 714 (900)
Q Consensus 669 id--k~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~ 714 (900)
++ .+++..+..|.++++... -.+..+|+|||..++.
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChhH
Confidence 98 577888888888887411 1346788999987654
No 173
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=1.1e-07 Score=104.54 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=111.5
Q ss_pred CCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh----------
Q 046258 179 DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA---------- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~---------- 248 (900)
+.++||+.++.++.+.+... ..++|+||+|+|||++++.+++.. + +++++|.....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 35899999999999988763 689999999999999999999875 2 66777654310
Q ss_pred -------------------------cccc---cchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhH
Q 046258 249 -------------------------GAKY---RGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLF 300 (900)
Q Consensus 249 -------------------------g~~~---~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L 300 (900)
+... ...+...+..+...+...+ +++|+|||+|.+..... ....+....|
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~-~~~~~~~~~L 155 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGS-RGGKELLALF 155 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTT-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCc-cchhhHHHHH
Confidence 0000 0112222222222222223 88999999999875211 1123444556
Q ss_pred hhhhhc-CcEEEEEecCHHHH-HHH---hhccHHHHcccc-eeeecCCChHHHHHHHHHHHHHHhcccCcccChhHHHHH
Q 046258 301 KPMLAR-GQLRCIGATTLEEY-RKY---VEKDAAFERRFQ-QVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVA 374 (900)
Q Consensus 301 ~~~l~~-g~irvI~att~~~~-~~~---~~~d~al~~Rf~-~i~i~~P~~~e~~~ilr~l~~~~~~~~~v~i~~eal~~l 374 (900)
..+++. ..+.+|.+++.... ..+ ......+..|+. .+.+...+.++..++++..... .+..++++.+..+
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~~i 231 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIEEA 231 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Confidence 555543 57888888754432 222 122233444543 5778777888888887654332 3455777777777
Q ss_pred HHHhhh
Q 046258 375 AQLSAR 380 (900)
Q Consensus 375 ~~~s~~ 380 (900)
...+.+
T Consensus 232 ~~~tgG 237 (350)
T 2qen_A 232 VELLDG 237 (350)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 777743
No 174
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.76 E-value=4.6e-09 Score=106.13 Aligned_cols=107 Identities=20% Similarity=0.296 Sum_probs=66.7
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEcc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDE 668 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDE 668 (900)
.+++|+||||||||++|++++..+.....+++.++++++.... ... + .......+.+.+.. ..+|+|||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~-~~~~~~~~~~~~~~--~~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL-----KHS---L-QDQTMNEKLDYIKK--VPVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH-----HHC-------CCCHHHHHHHHH--SSEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH-----HHH---h-ccchHHHHHHHhcC--CCEEEEcC
Confidence 3799999999999999999999997767788888887654321 110 0 00001122233333 35999999
Q ss_pred ccccCH--HHHHHHH-HHhhCCeeecCCCceeecCCeEEEEccCCCcHHHh
Q 046258 669 VEKAHI--SVFNTLL-QVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 716 (900)
Q Consensus 669 idk~~~--~~~~~Ll-~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~ 716 (900)
++..+. ..+..|+ .+++... ..+..+|+|||.+++.+.
T Consensus 124 i~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 124 LGAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp ECCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHH
Confidence 976443 3344344 4554310 124569999999877664
No 175
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.73 E-value=2.6e-07 Score=101.77 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=99.0
Q ss_pred CCCCCchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-----h-----
Q 046258 179 DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-----A----- 248 (900)
Q Consensus 179 ~~~iG~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-----~----- 248 (900)
+.++||+.++..+.+ +.. ..++|+||+|+|||++++.+++.. +..++.+++.... .
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHHH
Confidence 358999999999999 776 589999999999999999999886 2236777765420 0
Q ss_pred -------------------------cccccc---h------HHHHHHHHHHHHHHcC-CCeEEEEcchhhhhhCCCCCCh
Q 046258 249 -------------------------GAKYRG---E------FEERLKAVLKEVEEAE-GKVILFIDEIHLVLGAGRTEGS 293 (900)
Q Consensus 249 -------------------------g~~~~g---~------~~~~l~~~~~~~~~~~-~~~iL~iDEi~~l~~~~~~~~~ 293 (900)
|....+ . ....+..++..+.... ++++|+|||+|.+.....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~---- 154 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG---- 154 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT----
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc----
Confidence 000000 0 0012334444454432 388999999999875311
Q ss_pred hhHHHhHhhhhhc-CcEEEEEecCHHHH-HHH---hhccHHHHccc-ceeeecCCChHHHHHHHHHHHH
Q 046258 294 MDAANLFKPMLAR-GQLRCIGATTLEEY-RKY---VEKDAAFERRF-QQVYVAEPSVPDTVSILRGLKE 356 (900)
Q Consensus 294 ~~~~~~L~~~l~~-g~irvI~att~~~~-~~~---~~~d~al~~Rf-~~i~i~~P~~~e~~~ilr~l~~ 356 (900)
.+....|..+.+. ..+.+|.+++.... ... ......+..|+ ..+.+...+.++..++++....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 1123344444443 46888888864432 222 12223344455 4688888898898888876544
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=1.4e-08 Score=96.98 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=64.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
.++|+||+|+|||+|+++++..+...+...+.++..++... .+ + ....+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~~---~--~~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------DA---A--FEAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------GG---G--GGCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------HH---H--hCCCEEEEeCc
Confidence 69999999999999999999988654445777777654321 01 1 13479999999
Q ss_pred cccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHH
Q 046258 670 EKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEH 714 (900)
Q Consensus 670 dk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~ 714 (900)
+.+.+..+..|+++++.-. .-...++|+|||..+..
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCTTT
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCHHH
Confidence 9998877888888886311 11123477788876543
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.69 E-value=6.4e-08 Score=124.77 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=52.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCC-------CcccccccchhHHHHhCCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPG-------YVGHEEGGQLTEAVRRRPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g-------~~g~~~~~~l~~~~~~~~~~ 662 (900)
+++|+||||||||+||.+++......+.....+++.+...... .+-.|.+.. +.+..-...+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999888777677888888876543322 222231100 01111111223344556779
Q ss_pred EEEEcccccc
Q 046258 663 VVLFDEVEKA 672 (900)
Q Consensus 663 vlllDEidk~ 672 (900)
+|+|||++.+
T Consensus 1508 lVVIDsi~al 1517 (2050)
T 3cmu_A 1508 VIVVDSVAAL 1517 (2050)
T ss_dssp EEEESCGGGC
T ss_pred EEEEcChhHh
Confidence 9999999743
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.65 E-value=4.3e-08 Score=98.94 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=60.3
Q ss_pred CCCCCCCCchH----HHHHHHHHHccCC----CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh
Q 046258 176 GKLDPVIGRDE----EIRRVVRILSRRT----KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV 247 (900)
Q Consensus 176 ~~~~~~iG~~~----~i~~l~~~l~~~~----~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~ 247 (900)
.+|+.+++.+. .+..+.+++.... +.+++|+||||||||++|++++..+...+. +++.+++..+.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~-------~~~~~~~~~~~ 94 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV-------SSLIVYVPELF 94 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC-------CEEEEEHHHHH
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEEhHHHH
Confidence 35677877553 3444555554431 278999999999999999999999866543 48888887654
Q ss_pred hccc---ccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhh
Q 046258 248 AGAK---YRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVL 285 (900)
Q Consensus 248 ~g~~---~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~ 285 (900)
.... ..+. +...+..+... .+|||||++...
T Consensus 95 ~~~~~~~~~~~----~~~~~~~~~~~---~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQT----MNEKLDYIKKV---PVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CC----CHHHHHHHHHS---SEEEEEEECCC-
T ss_pred HHHHHHhccch----HHHHHHHhcCC---CEEEEcCCCCCc
Confidence 3110 0111 12233334432 379999996653
No 179
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.60 E-value=4.3e-08 Score=108.53 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=114.1
Q ss_pred CCCCCCCCchHHHHHHHHHHccC-----CCCCeEEEcCCCCcHHHHHHHH-HHHHhcCCCCCCCCCcEEEEEech---hh
Q 046258 176 GKLDPVIGRDEEIRRVVRILSRR-----TKNNPVLIGEPGVGKTAVVEGL-AQRIVRGDVPSNLADVRLIALDMG---AL 246 (900)
Q Consensus 176 ~~~~~~iG~~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~l-a~~l~~~~~p~~l~~~~~~~~~~~---~l 246 (900)
..+.|++|++...+.+.-.+... ...|+||+|+||| ||.+|+++ ++.+.+ ..|....++ .+
T Consensus 210 ~sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR---------~~ft~g~~ss~~gL 279 (506)
T 3f8t_A 210 RAIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR---------GVYVDLRRTELTDL 279 (506)
T ss_dssp HHHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS---------EEEEEGGGCCHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC---------eEEecCCCCCccCc
Confidence 45556999988766665555542 2349999999999 99999999 765522 222211111 12
Q ss_pred hhcccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhhhCCCCCChhhHHHhHhhhhhcC-----------cEEEEEec
Q 046258 247 VAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARG-----------QLRCIGAT 315 (900)
Q Consensus 247 ~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-----------~irvI~at 315 (900)
... .++. .+ ..-..+.+..+++|+ +|+||++.+.+..++ .|++.|+.+ .+++|+|+
T Consensus 280 t~s--~r~~-tG-~~~~~G~l~LAdgGv-l~lDEIn~~~~~~qs--------aLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 280 TAV--LKED-RG-WALRAGAAVLADGGI-LAVDHLEGAPEPHRW--------ALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp SEE--EEES-SS-EEEEECHHHHTTTSE-EEEECCTTCCHHHHH--------HHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred eEE--EEcC-CC-cccCCCeeEEcCCCe-eehHhhhhCCHHHHH--------HHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 211 1111 00 000112233456565 999999888665444 888888865 46789999
Q ss_pred CHHHHH------HHhhccHHHHcccceee--ecCCChHHH---------HHHHHHHHHHHh-cccCcccChhHHHHHHHH
Q 046258 316 TLEEYR------KYVEKDAAFERRFQQVY--VAEPSVPDT---------VSILRGLKEKYE-GHHGVRIQDRALVVAAQL 377 (900)
Q Consensus 316 t~~~~~------~~~~~d~al~~Rf~~i~--i~~P~~~e~---------~~ilr~l~~~~~-~~~~v~i~~eal~~l~~~ 377 (900)
|+.+.. .-+.+.+++.+||+.+. .+.|+.++. .+.++.+..... .+..+.+++++..++.++
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 876510 01367899999998644 355543321 112333222222 234567888887777765
Q ss_pred hhhh------------ccCCCChhhHHHHHHHHHHHhhhhcc
Q 046258 378 SARY------------ITGRHLPDKAIDLVDEACANVRVQLD 407 (900)
Q Consensus 378 s~~~------------~~~~~~p~~a~~Lld~a~a~~~~~~~ 407 (900)
.... .....-|.....|+..+-++.++...
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR 468 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS 468 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc
Confidence 3211 12223344555555555555555443
No 180
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=98.57 E-value=1.3e-08 Score=106.35 Aligned_cols=150 Identities=16% Similarity=0.254 Sum_probs=104.0
Q ss_pred hhcCcEEEEEec-CHHHHHHHhhccHHHHcccceeeecCCChHHHHHHHHHHHHHHhcccCc--ccChhHHHHHHHHhhh
Q 046258 304 LARGQLRCIGAT-TLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGV--RIQDRALVVAAQLSAR 380 (900)
Q Consensus 304 l~~g~irvI~at-t~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~~~ilr~l~~~~~~~~~v--~i~~eal~~l~~~s~~ 380 (900)
+++|.+++++.+ .+.....+...+|++..++..+.-..++..+..++++.+.+.|..+... .+++++...+.+
T Consensus 90 lpdG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~~~~e~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~---- 165 (252)
T 3ljc_A 90 LPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNS---- 165 (252)
T ss_dssp CTTSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTS----
T ss_pred CCCCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCCCChHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHc----
Confidence 457788888777 5555444444566666665544332334456677777777777665432 245554433221
Q ss_pred hccCCCChhhHHHHHHHHHHHhhhhccCChhHHHH------HH--HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q 046258 381 YITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDN------LE--RKRMQLEIELHALEKEKDKASKARLVEVRKELDDL 452 (900)
Q Consensus 381 ~~~~~~~p~~a~~Lld~a~a~~~~~~~~~~~~l~~------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 452 (900)
.+++..++|.+|+.+.++...++..++. ++ ..+...++++..++.++.+++++++++.|||| +|
T Consensus 166 -------~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey-~L 237 (252)
T 3ljc_A 166 -------IDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREY-YL 237 (252)
T ss_dssp -------CCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred -------cCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 2367889999999988877776665543 33 33455667788888999999999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q 046258 453 RDKLQPLMMRYKK 465 (900)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (900)
||||++|++++|+
T Consensus 238 rEQlk~IqkELGe 250 (252)
T 3ljc_A 238 NEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999985
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.54 E-value=4.9e-08 Score=105.26 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=66.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc-CCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF-DDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
.+++|+||||||||+||++|+..+. ..+.+++.++++++... +.+... .| ....+...+.. ..||+||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~--~~--~~~~~~~~~~~--~~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAIS--NG--SVKEEIDAVKN--VPVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHT--SSEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhc--cc--hHHHHHHHhcC--CCEEEEc
Confidence 4799999999999999999999988 66677888888765432 211100 00 01123334443 3699999
Q ss_pred ccccc--CHHHHHHHH-HHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhc
Q 046258 668 EVEKA--HISVFNTLL-QVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLS 717 (900)
Q Consensus 668 Eidk~--~~~~~~~Ll-~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~ 717 (900)
||+.. ++..++.|+ .+++... ..+..+|+|||.+++.+..
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLER 264 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH
Confidence 99654 333344343 3665311 1234699999998877754
No 182
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.54 E-value=5e-07 Score=99.26 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=113.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCC-CceeEecccccccccccccccCCCCCCcccccccchhHHHH----hCCCeEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDE-NLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVR----RRPYSVV 664 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~-~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~----~~~~~vl 664 (900)
.+||+||+|+||++.++.|++.+...+ .++..+.... ....+.+.+.+. -.++.|+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-------------------NTDWNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-------------------TCCHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-------------------CCCHHHHHHHhcCcCCccCCeEE
Confidence 699999999999999999999875421 1211111100 011123333333 2457899
Q ss_pred EEccccc-cCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCC-CcHHHhcccCCccchHHHHHHHHHHHHhcccH
Q 046258 665 LFDEVEK-AHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL-GAEHLLSGMMGKVTMQVARDQVLQEVRKHFRP 742 (900)
Q Consensus 665 llDEidk-~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (900)
++||++. +..+.++.|+..+++ ...+++||++++. +... . ...+.+
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~--~-------------------~~k~~~ 128 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQ--E-------------------NAAWFT 128 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTT--T-------------------TSHHHH
T ss_pred EEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhh--H-------------------hhHHHH
Confidence 9999999 999999999999986 2346667766543 2100 0 235678
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHcCCCCCCCchHHHHHHHHHH
Q 046258 743 ELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKV 816 (900)
Q Consensus 743 ~ll~R~~~~i~f~pl~~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i 816 (900)
.+.+|+ .++.|.|++.+++...+...+. ..| +.++++++++|++.. .++ .|.+.+.+++..
T Consensus 129 ~i~sr~-~~~~~~~l~~~~l~~~l~~~~~-------~~g--~~i~~~a~~~l~~~~-~gd--l~~~~~elekl~ 189 (343)
T 1jr3_D 129 ALANRS-VQVTCQTPEQAQLPRWVAARAK-------QLN--LELDDAANQVLCYCY-EGN--LLALAQALERLS 189 (343)
T ss_dssp HHTTTC-EEEEECCCCTTHHHHHHHHHHH-------HTT--CEECHHHHHHHHHSS-TTC--HHHHHHHHHHHH
T ss_pred HHHhCc-eEEEeeCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHh-chH--HHHHHHHHHHHH
Confidence 899999 8999999999999988887776 344 589999999999763 334 777777776543
No 183
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.45 E-value=2.6e-07 Score=87.88 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMK 71 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~ 71 (900)
.||+.+.++|..|..+|+++||.+|++||||+||++++++.+.++|+++|++. +.+++.+...++
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~--~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADL--PRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCH--HHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCH--HHHHHHHHHHhc
Confidence 58999999999999999999999999999999999998899999999999999 999999887663
No 184
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.42 E-value=2e-07 Score=88.58 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAM 70 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l 70 (900)
.||+.+.++|..|..+|+++|+.+|++||||+||++++++.+.++|+++|++. +.+++.+.+.+
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~--~~l~~~i~~~~ 144 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVND--RTLAQLTIDMM 144 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHH--HHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCH--HHHHHHHHHHh
Confidence 58999999999999999999999999999999999999899999999999999 99998887643
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.42 E-value=7.5e-07 Score=87.96 Aligned_cols=96 Identities=17% Similarity=0.328 Sum_probs=54.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEV 669 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllDEi 669 (900)
+++|+||||||||++|.+|++.+.+ ..+.+..+. .+ + + +.. .....+++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~~fans~---s~-----f-----~--------l~~---l~~~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVISFVNST---SH-----F-----W--------LEP---LTDTKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EECCCCCSS---SC-----G-----G--------GGG---GTTCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeeeEEecc---ch-----h-----h--------hcc---cCCCCEEEEECC
Confidence 6999999999999999999999854 222211110 00 0 0 000 012358999999
Q ss_pred cccCHHH-HHHHHHHhhCCeee-cCC-CceeecCCeEEEEccCCCc
Q 046258 670 EKAHISV-FNTLLQVLDDGRLT-DGQ-GRTVDFRNTVIIMTSNLGA 712 (900)
Q Consensus 670 dk~~~~~-~~~Ll~~ld~g~~~-d~~-g~~~~~~~~~iI~tsn~~~ 712 (900)
+....+. ...+..+|+...+. |.. -..+.....-+|+|||.+.
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~ 158 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP 158 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCc
Confidence 8654333 34566777743221 111 1112223347999999864
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.41 E-value=1.9e-07 Score=92.35 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=55.0
Q ss_pred CCCCCCCc----hHHHHHHHHHHcc---CCCCCeEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEechhhhh
Q 046258 177 KLDPVIGR----DEEIRRVVRILSR---RTKNNPVLIGEPGVGKTAVVEGLAQRIV-RGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 177 ~~~~~iG~----~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
+|+.+++. ...+..+.+++.. ..+.+++|+||||||||+++++++..+. .. +..++.+++..+..
T Consensus 8 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-------g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 8 NLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-------GIRGYFFDTKDLIF 80 (180)
T ss_dssp CSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-------CCCCCEEEHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHH
Confidence 46667653 3444445444433 3456799999999999999999999885 32 22356666666542
Q ss_pred cccccchHHH-HHHHHHHHHHHcCCCeEEEEcchhh
Q 046258 249 GAKYRGEFEE-RLKAVLKEVEEAEGKVILFIDEIHL 283 (900)
Q Consensus 249 g~~~~g~~~~-~l~~~~~~~~~~~~~~iL~iDEi~~ 283 (900)
.. ...+.. .....+..+. .+.+|+|||++.
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~---~~~llilDE~~~ 111 (180)
T 3ec2_A 81 RL--KHLMDEGKDTKFLKTVL---NSPVLVLDDLGS 111 (180)
T ss_dssp HH--HHHHHHTCCSHHHHHHH---TCSEEEEETCSS
T ss_pred HH--HHHhcCchHHHHHHHhc---CCCEEEEeCCCC
Confidence 10 000000 0001222222 255799999964
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.37 E-value=2.1e-07 Score=88.76 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEE
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 278 (900)
...+++|+||+|+|||+++++++..+... +.+++.++...+... . + + ..+.+|+|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~-----~-------~---~---~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT-----D-------A---A---FEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC-----G-------G---G---GGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH-----H-------H---H---hCCCEEEE
Confidence 55679999999999999999999988542 445788877665431 0 0 1 12457999
Q ss_pred cchhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccce
Q 046258 279 DEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQ 336 (900)
Q Consensus 279 DEi~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~~ 336 (900)
||++.+.... ...+...+....++|..++|.+++.... .+... +.+.+|+..
T Consensus 90 DE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~-~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 90 DQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ-QLVIR-EDLRTRMAY 141 (149)
T ss_dssp ESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT-TSSCC-HHHHHHGGG
T ss_pred eCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH-Hcccc-HHHHHHHhc
Confidence 9997753321 2233444444555665545556643221 11123 888889863
No 188
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.36 E-value=9.3e-07 Score=91.60 Aligned_cols=135 Identities=16% Similarity=0.297 Sum_probs=79.5
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcccccccchhHHHHhCCCeEEEEc
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFD 667 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlllD 667 (900)
..+++|+||||||||++|++||..+.. ...++.+. .+ . .+... ....+++.|
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l----~G~vn~~~---~~-----------f-------~l~~~---~~k~i~l~E 155 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF----YGCVNWTN---EN-----------F-------PFNDC---VDKMVIWWE 155 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC----EEECCTTC---SS-----------C-------TTGGG---SSCSEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc----cceeeccc---cc-----------c-------ccccc---cccEEEEec
Confidence 347999999999999999999987421 11122211 00 0 01110 112456666
Q ss_pred cccccCHHHHHHHHHHhhCCeee-cCC-CceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHHhcccHHHH
Q 046258 668 EVEKAHISVFNTLLQVLDDGRLT-DGQ-GRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL 745 (900)
Q Consensus 668 Eidk~~~~~~~~Ll~~ld~g~~~-d~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 745 (900)
|.... .+.++.+-.+++.+.+. |.. ........+.+|+|||.+......+... .....+.|.
T Consensus 156 e~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~---------------s~~~~~~L~ 219 (267)
T 1u0j_A 156 EGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST---------------TFEHQQPLQ 219 (267)
T ss_dssp SCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE---------------ECTTHHHHH
T ss_pred cccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc---------------chhhhHHHh
Confidence 66544 45666777888754433 222 2233456778999999864321110000 112356799
Q ss_pred hcccceeecC--------CCCHHHHHHHHH
Q 046258 746 NRLDEIVVFD--------PLSHEQLRKVAR 767 (900)
Q Consensus 746 ~R~~~~i~f~--------pl~~e~~~~I~~ 767 (900)
+|+ .++.|. +++.++....+.
T Consensus 220 sR~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 220 DRM-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TTE-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hhE-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 999 888888 899999888776
No 189
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.32 E-value=2.6e-06 Score=93.48 Aligned_cols=181 Identities=18% Similarity=0.240 Sum_probs=104.6
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc------cccc
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM------EQHS 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~------~~~~ 632 (900)
.++|.+..++.+.+.+.. + ..++++||+|+|||+|++.+++.. ..+.++|.... ....
T Consensus 13 ~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREE 76 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHH
T ss_pred hcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHH
Confidence 366777777777777643 1 269999999999999999999876 26778876532 0000
Q ss_pred -c---ccccCC-----------------CCCCcccccccchhHHHH----hCCCeEEEEccccccCH-------HHHHHH
Q 046258 633 -V---SRLIGA-----------------PPGYVGHEEGGQLTEAVR----RRPYSVVLFDEVEKAHI-------SVFNTL 680 (900)
Q Consensus 633 -~---~~l~G~-----------------~~g~~g~~~~~~l~~~~~----~~~~~vlllDEidk~~~-------~~~~~L 680 (900)
. ...++. .... .......+...+. .....||+|||++.+.. ++...|
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 0 011110 0000 0001111222222 12368999999999763 666777
Q ss_pred HHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHH--hcccHHHHhcccceeecCCCC
Q 046258 681 LQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR--KHFRPELLNRLDEIVVFDPLS 758 (900)
Q Consensus 681 l~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~R~~~~i~f~pl~ 758 (900)
..+++. ..++.+|+|+.... + ...+. .....++.+|....+.+.||+
T Consensus 156 ~~~~~~------------~~~~~~il~g~~~~--~-----------------l~~~l~~~~~~~~l~~~~~~~i~l~pl~ 204 (350)
T 2qen_A 156 AYAYDS------------LPNLKIILTGSEVG--L-----------------LHDFLKITDYESPLYGRIAGEVLVKPFD 204 (350)
T ss_dssp HHHHHH------------CTTEEEEEEESSHH--H-----------------HHHHHCTTCTTSTTTTCCCEEEECCCCC
T ss_pred HHHHHh------------cCCeEEEEECCcHH--H-----------------HHHHHhhcCCCCccccCccceeeCCCCC
Confidence 666663 13677777765421 0 00000 112334566775689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHH
Q 046258 759 HEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLA 796 (900)
Q Consensus 759 ~e~~~~I~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 796 (900)
.++..+++...+. ..| ..++++++..+..
T Consensus 205 ~~e~~~~l~~~~~-------~~~--~~~~~~~~~~i~~ 233 (350)
T 2qen_A 205 KDTSVEFLKRGFR-------EVN--LDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHHHHHHH-------TTT--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH
Confidence 9999888876543 222 2356666555543
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.31 E-value=3.4e-07 Score=98.64 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=56.7
Q ss_pred CCCCCCCch----HHHHHHHHHHccC---CCCCeEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEechhhhh
Q 046258 177 KLDPVIGRD----EEIRRVVRILSRR---TKNNPVLIGEPGVGKTAVVEGLAQRIV-RGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 177 ~~~~~iG~~----~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
+|+.+++.+ ..+..+.+++... ...+++|+||||||||++|.+|+..+. ..+. +++.+++..+..
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-------~v~~~~~~~l~~ 194 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-------STTLLHFPSFAI 194 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-------CEEEEEHHHHHH
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-------cEEEEEHHHHHH
Confidence 345555433 3444555556542 257899999999999999999999987 5543 378888776543
Q ss_pred c---ccccchHHHHHHHHHHHHHHcCCCeEEEEcchhhhh
Q 046258 249 G---AKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVL 285 (900)
Q Consensus 249 g---~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~ 285 (900)
. ....|. +...+..+.. ..+|||||++...
T Consensus 195 ~l~~~~~~~~----~~~~~~~~~~---~~lLiiDdig~~~ 227 (308)
T 2qgz_A 195 DVKNAISNGS----VKEEIDAVKN---VPVLILDDIGAEQ 227 (308)
T ss_dssp HHHCCCC--------CCTTHHHHT---SSEEEEETCCC--
T ss_pred HHHHHhccch----HHHHHHHhcC---CCEEEEcCCCCCC
Confidence 1 111111 1222333332 2379999996543
No 191
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.23 E-value=1.8e-06 Score=82.42 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMK 71 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~~~l~ 71 (900)
.||+.+.++|..|..+|+.+||.+|++||||+||+.++++.+.++|..+|++. +.++..+....+
T Consensus 79 ~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~--~~l~~~i~~~~g 143 (150)
T 2y1q_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSL--NKARQQVLQLLG 143 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCH--HHHHHHHHHHHC
Confidence 68999999999999999999999999999999999988888889999999999 999998887765
No 192
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.17 E-value=5e-06 Score=91.37 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=95.8
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc-----cccc-
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM-----EQHS- 632 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~-----~~~~- 632 (900)
.++|.+..+..+.+ +. .+ .++++||+|+|||+|++.+++.+.. .++.+++..+. ....
T Consensus 14 ~~~gR~~el~~L~~-l~----------~~--~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR----------AP--ITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp GSCCCHHHHHHHHH-TC----------SS--EEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCSCCCHHHH
T ss_pred HhcChHHHHHHHHH-hc----------CC--cEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhccccCCCHHHH
Confidence 35666666666655 41 12 6999999999999999999988743 56788876541 1000
Q ss_pred c---c--------------cccCC----CCCCcc---------cccccchhHHHHhC--CCeEEEEccccccCH----HH
Q 046258 633 V---S--------------RLIGA----PPGYVG---------HEEGGQLTEAVRRR--PYSVVLFDEVEKAHI----SV 676 (900)
Q Consensus 633 ~---~--------------~l~G~----~~g~~g---------~~~~~~l~~~~~~~--~~~vlllDEidk~~~----~~ 676 (900)
. . .+++. +.+..+ ...-..+...+... ...||+|||++.++. ++
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 0 0 00110 000000 00111233344432 267899999999753 45
Q ss_pred HHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHHHH--hcccHHHHhcccceeec
Q 046258 677 FNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR--KHFRPELLNRLDEIVVF 754 (900)
Q Consensus 677 ~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~R~~~~i~f 754 (900)
...|..+++. ..++.+|+|++... .+ ..+. ......+.+|....+.+
T Consensus 158 ~~~l~~~~~~------------~~~~~~i~~g~~~~-~l------------------~~~l~~~~~~~~l~~r~~~~i~l 206 (357)
T 2fna_A 158 LPALAYAYDN------------LKRIKFIMSGSEMG-LL------------------YDYLRVEDPESPLFGRAFSTVEL 206 (357)
T ss_dssp HHHHHHHHHH------------CTTEEEEEEESSHH-HH------------------HHHTTTTCTTSTTTTCCCEEEEE
T ss_pred HHHHHHHHHc------------CCCeEEEEEcCchH-HH------------------HHHHhccCCCCccccCccceeec
Confidence 5566555553 13567778776421 00 0000 11223466676678899
Q ss_pred CCCCHHHHHHHHHHHHH
Q 046258 755 DPLSHEQLRKVARLQMK 771 (900)
Q Consensus 755 ~pl~~e~~~~I~~~~l~ 771 (900)
.||+.++..+++...+.
T Consensus 207 ~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 207 KPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998887654
No 193
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.09 E-value=5.1e-06 Score=78.57 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHH
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFN 67 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~ 67 (900)
.||+.+.++|..|..+|+.+|+.+|+++|||+||++++++.+.++|..+|++. +.++..+.
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~--~~l~~~i~ 139 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSR--LDVVNFIS 139 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCH--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCH--HHHHHHHH
Confidence 58999999999999999999999999999999999988887899999999999 88887653
No 194
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.09 E-value=1.6e-06 Score=85.62 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHHHHccC-CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 186 EEIRRVVRILSRR-TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 186 ~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.-+..+..++... .++++||+||||||||++|.++++.+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3356666666553 34569999999999999999999988
No 195
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.07 E-value=1e-05 Score=88.65 Aligned_cols=172 Identities=10% Similarity=0.041 Sum_probs=106.5
Q ss_pred HccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHH---HcC
Q 046258 195 LSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVE---EAE 271 (900)
Q Consensus 195 l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~---~~~ 271 (900)
+.++..+..||+||+|+||++.++.|++.+...+.. ...++.++ . . .+ ++.+.+.+. -.+
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~--~----~---~~----~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID--P----N---TD----WNAIFSLCQAMSLFA 75 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC--T----T---CC----HHHHHHHHHHHHHCC
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec--C----C---CC----HHHHHHHhcCcCCcc
Confidence 343445567889999999999999999987532211 11223332 1 1 11 233333332 234
Q ss_pred CCeEEEEcchhh-hhhCCCCCChhhHHHhHhhhhhc---CcEEEEEecCHHHHHHHhhccHHHHcccceeeecCCChHHH
Q 046258 272 GKVILFIDEIHL-VLGAGRTEGSMDAANLFKPMLAR---GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDT 347 (900)
Q Consensus 272 ~~~iL~iDEi~~-l~~~~~~~~~~~~~~~L~~~l~~---g~irvI~att~~~~~~~~~~d~al~~Rf~~i~i~~P~~~e~ 347 (900)
+.-|++|||+|. +.. ++.+.|..++++ +.+.++++++.....+....-+.+.+|+..+.+..++..+.
T Consensus 76 ~~kvvii~~~~~kl~~--------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNA--------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp SCEEEEEECCSSCCCT--------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred CCeEEEEECCCCCCCh--------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 467899999988 632 345678888875 33444444442211001123577888999899988888887
Q ss_pred HHHHHHHHHHHhcccCcccChhHHHHHHHHhhhhccCCCChhhHHHHHHHHHHH
Q 046258 348 VSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACAN 401 (900)
Q Consensus 348 ~~ilr~l~~~~~~~~~v~i~~eal~~l~~~s~~~~~~~~~p~~a~~Lld~a~a~ 401 (900)
...++..... .++.++++++..++..+.+. ...+...++..+..
T Consensus 148 ~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gd------l~~~~~elekl~l~ 191 (343)
T 1jr3_D 148 PRWVAARAKQ----LNLELDDAANQVLCYCYEGN------LLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHHHHH----TTCEECHHHHHHHHHSSTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCCCHHHHHHHHHHhchH------HHHHHHHHHHHHHh
Confidence 7777666654 68899999999999887433 23566666655543
No 196
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.98 E-value=1e-05 Score=80.83 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=67.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCC-cEEEEEechhhhhccc-----------ccch--HHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLAD-VRLIALDMGALVAGAK-----------YRGE--FEERLKAVLKEV 267 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~-~~~~~~~~~~l~~g~~-----------~~g~--~~~~l~~~~~~~ 267 (900)
-.|++|+||+|||++|..++.....-+ |. -.| .+++..++..+..+.. ..++ ....+...+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh--
Confidence 468899999999999988765532000 00 013 3466666665532211 0000 0011221110
Q ss_pred HHcCCCeEEEEcchhhhhhCCCC-CChhhHHHhHhhhhhcCcEEEEEecCHHHHHHHhhccHHHHcccce-eeecCC
Q 046258 268 EEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEP 342 (900)
Q Consensus 268 ~~~~~~~iL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~g~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P 342 (900)
...+.++||+|||++.+.+.... .........|.. .....+.+|..|+... .++..++.|+.. +.+..|
T Consensus 83 ~~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~-~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 83 KPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNT-HRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp SGGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGG-TTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEEC
T ss_pred ccccCceEEEEEChhhhccCccccchhHHHHHHHHh-cCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCc
Confidence 01234788999999999765422 111121111111 1123466777776543 378889999986 555444
No 197
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.97 E-value=1.7e-05 Score=79.20 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=72.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc-----CCC-CceeEecccccccccccccccCCC---CCCccccc-ccchhHHH--H
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF-----DDE-NLLVRIDMSEYMEQHSVSRLIGAP---PGYVGHEE-GGQLTEAV--R 657 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~-----~~~-~~~i~i~~~~~~~~~~~~~l~G~~---~g~~g~~~-~~~l~~~~--~ 657 (900)
..|++|+||+|||++|..++.... ..+ .++...++.++....... .+.. ....+... ...+.+.. .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYI--ETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEE--ECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccccc--chhhhhccccCcccccHHHHHHHhhcc
Confidence 588999999999999988765542 223 456566766654322100 0000 00001000 01222221 2
Q ss_pred hCCCeEEEEcccccc--CH-HHH--HHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHH
Q 046258 658 RRPYSVVLFDEVEKA--HI-SVF--NTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQV 732 (900)
Q Consensus 658 ~~~~~vlllDEidk~--~~-~~~--~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 732 (900)
...++||+|||++.+ +. +.. ..++..|+..+ ....-+|++++.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~---------------------- 132 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQG---------------------- 132 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESC----------------------
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCC----------------------
Confidence 345799999999987 22 211 13555565422 122345666665
Q ss_pred HHHHHhcccHHHHhcccceeecCC
Q 046258 733 LQEVRKHFRPELLNRLDEIVVFDP 756 (900)
Q Consensus 733 ~~~~~~~~~~~ll~R~~~~i~f~p 756 (900)
...++..+.+|++..+.+.+
T Consensus 133 ----~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 133 ----PKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp ----GGGBCHHHHTTEEEEEEEEE
T ss_pred ----HHHHhHHHHHHhheEEEEcC
Confidence 24577889999988888776
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.95 E-value=1.5e-05 Score=84.63 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFID 279 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 279 (900)
+..++|+||||||||++|..++.. .... +.|+.+.....+.. +..+.+..+..+...+...+ +||||
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G~~-------VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~~---LLVID 189 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LGGK-------DKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQHR---VIVID 189 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HHTT-------SCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHCS---EEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CCCC-------EEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhCC---EEEEe
Confidence 344799999999999999999987 2222 22565532322221 12445666666666666543 79999
Q ss_pred chhhhhhCCCC---CC--hh---hHHHhHhhhhhcCcEEEEEecCH
Q 046258 280 EIHLVLGAGRT---EG--SM---DAANLFKPMLARGQLRCIGATTL 317 (900)
Q Consensus 280 Ei~~l~~~~~~---~~--~~---~~~~~L~~~l~~g~irvI~att~ 317 (900)
+++.+...... .| .. .....|..++....+.+|.++++
T Consensus 190 sI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 190 SLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 99998653322 01 11 22233333344445667777764
No 199
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=97.92 E-value=1.8e-05 Score=75.15 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHHHcCCCccHHHHHHHHH
Q 046258 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFN 67 (900)
Q Consensus 5 ~ft~~a~~~l~~A~~~A~~~~~~~v~~eHlllaLl~~~~~~~~~~l~~~g~~~~~~~l~~~l~ 67 (900)
.||+.+.+++..|..+|+.+|+.+|+++|||+||+ ++++.+.++|..+|++. +.++..+.
T Consensus 82 ~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~--~~l~~~l~ 141 (148)
T 1khy_A 82 QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATT--ANITQAIE 141 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCH--HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCH--HHHHHHHH
Confidence 58999999999999999999999999999999999 55677899999999999 88887764
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.89 E-value=1.2e-05 Score=79.40 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=49.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc--c-cccccccccccCCCCCCcccccccchhHHHHhCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS--E-YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~--~-~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
.++++||+|+|||+++..++..+...+.+.+.+... . +... .+..-.|.............+.+.+. .+..+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~-~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHST-MIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCC-EECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcc-cEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 478999999999999865555543333343333211 0 1000 01111111100011111111211111 24689999
Q ss_pred ccccccCHHHHHHHHHHhhC
Q 046258 667 DEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 667 DEidk~~~~~~~~Ll~~ld~ 686 (900)
||+..+++++++.|..+.+.
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHHHC
Confidence 99999988888888888875
No 201
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.85 E-value=7.4e-05 Score=63.66 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCc---cccCHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHc
Q 046258 756 PLSHEQLRKVARLQMKDVAIRLAERGVA---LAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826 (900)
Q Consensus 756 pl~~e~~~~I~~~~l~~~~~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~g~R~L~~~i~~~i~~~l~~~i~~ 826 (900)
.|+.+|...|++++|- ++++..+|+. +.++++++..|++. |+++.|+|.|++.|.. +++..+..++.
T Consensus 2 GYt~~EK~~IAk~~Li--Pkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~-i~RK~a~~i~~ 71 (94)
T 1qzm_A 2 GYTEDEKLNIAKRHLL--PKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISK-LCRKAVKQLLL 71 (94)
T ss_dssp CCCHHHHHHHHHHTHH--HHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHH-HHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcc--HHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHH-HHHHHHHHHHH
Confidence 5899999999999998 8888888875 89999999999965 9999999999999955 66666666764
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.78 E-value=6.9e-05 Score=75.43 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=86.0
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccC---CCCCCc---ccccc-cchhHHHHhCC
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG---APPGYV---GHEEG-GQLTEAVRRRP 660 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G---~~~g~~---g~~~~-~~l~~~~~~~~ 660 (900)
...++|.|++|||||++|-.+|..+...+..++.+++...........+.| .+++.+ |.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 457999999999999999999999877666776667654221111111222 122211 11111 234444444 4
Q ss_pred CeEEEEccccccCH------HHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcH-HHhcccCCccchHHHHHHHH
Q 046258 661 YSVVLFDEVEKAHI------SVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAE-HLLSGMMGKVTMQVARDQVL 733 (900)
Q Consensus 661 ~~vlllDEidk~~~------~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~-~~~~~~~~~~~~~~~~~~~~ 733 (900)
+.++++||+...+. ..+..+...++.| .=++.|+|...- .+.+ .-..+-
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlqh~esl~d----------~v~~it 140 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQHLESLND----------QVRGIT 140 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGGGBGGGHH----------HHHHHH
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEccccccccHHH----------HHHHHc
Confidence 58999999986522 1344444455542 237788986421 1110 000000
Q ss_pred -HHHHhcccHHHHhcccceeecCCCCHHHHH
Q 046258 734 -QEVRKHFRPELLNRLDEIVVFDPLSHEQLR 763 (900)
Q Consensus 734 -~~~~~~~~~~ll~R~~~~i~f~pl~~e~~~ 763 (900)
-.+.++++..++.+.|+ |.+..++++++.
T Consensus 141 g~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~ 170 (228)
T 2r8r_A 141 GVQVRETLPDWVLQEAFD-LVLIDLPPRELL 170 (228)
T ss_dssp SCCCCSCBCHHHHHTCSE-EEEBCCCHHHHH
T ss_pred CCCcCCcCccHHHhhCCe-EEEecCCHHHHH
Confidence 12256789999999955 677778888753
No 203
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.70 E-value=0.00011 Score=76.10 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred HHHHHHHHccC-C-CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 188 IRRVVRILSRR-T-KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 188 i~~l~~~l~~~-~-~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..-+..++.+. . +++++|+||||||||++|.+||+.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44466677764 4 4569999999999999999999874
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=7.5e-05 Score=73.23 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=21.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.+.|+||+|+|||+|.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998873
No 205
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=0.00019 Score=70.35 Aligned_cols=23 Identities=43% Similarity=0.892 Sum_probs=21.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
++.|+||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 206
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.59 E-value=9.4e-05 Score=78.46 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=39.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCccccccc---chhHHHHhCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGG---QLTEAVRRRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~~~~~---~l~~~~~~~~~~vlll 666 (900)
.++|+||||||||+||..++... +....|+.+...+.... +. .+... .+.+.+.+.+ +|+|
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~------------~~-~~le~~l~~i~~~l~~~~--LLVI 188 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSG------------YN-TDFNVFVDDIARAMLQHR--VIVI 188 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTT------------CB-CCHHHHHHHHHHHHHHCS--EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhh------------hh-cCHHHHHHHHHHHHhhCC--EEEE
Confidence 47999999999999999999872 22223444422321100 00 00011 1233444444 9999
Q ss_pred ccccccCH
Q 046258 667 DEVEKAHI 674 (900)
Q Consensus 667 DEidk~~~ 674 (900)
|+|..+.+
T Consensus 189 DsI~aL~~ 196 (331)
T 2vhj_A 189 DSLKNVIG 196 (331)
T ss_dssp ECCTTTC-
T ss_pred eccccccc
Confidence 99998743
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.53 E-value=9.1e-05 Score=94.96 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------hc---ccccch----HHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-------AG---AKYRGE----FEERLKAVLKE 266 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~g---~~~~g~----~~~~l~~~~~~ 266 (900)
+.++|+||||||||++|..++......+.| .+.+++.... .| .++.++ .|..++.++..
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~-------~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKT-------CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------EEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCc-------eeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 348999999999999999999887655544 5666655422 12 234555 78888777776
Q ss_pred HHHcCCCeEEEEcchhhhhhC
Q 046258 267 VEEAEGKVILFIDEIHLVLGA 287 (900)
Q Consensus 267 ~~~~~~~~iL~iDEi~~l~~~ 287 (900)
+++.. ++++|+|+++.|.+.
T Consensus 1156 ar~~~-~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1156 ARSGA-VDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHTC-CSEEEESCGGGCCCH
T ss_pred HHhcC-CeEEEeCchHhcCcc
Confidence 76655 889999999999876
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.49 E-value=0.00032 Score=71.11 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=56.6
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc-ccccccccCCCCCCcccccccchhHHHHh----CCC
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME-QHSVSRLIGAPPGYVGHEEGGQLTEAVRR----RPY 661 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~-~~~~~~l~G~~~g~~g~~~~~~l~~~~~~----~~~ 661 (900)
+...++++||+|+|||+++..++..+...+.+...+....-.. ...+..-+|-............+.+.+.. .+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3346889999999999998888877765455555553221100 11111112321111111111234445554 246
Q ss_pred eEEEEccccccCHHHHHHHHHHhh
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLD 685 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld 685 (900)
.+|++||+.-++.++...+..+.+
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CEEEEecCccCcHHHHHHHHHHHh
Confidence 899999999999887776655444
No 209
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.49 E-value=0.00033 Score=82.71 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCCCCCchHHHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 178 LDPVIGRDEEIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
...++||+.++.++.+.+... ...-++|+|++|+|||++|..+++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 346999999999999998752 3345889999999999999998753
No 210
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.39 E-value=0.00031 Score=79.98 Aligned_cols=113 Identities=20% Similarity=0.278 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCC-ceeEecccccc----------cc
Q 046258 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN-LLVRIDMSEYM----------EQ 630 (900)
Q Consensus 562 g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~-~~i~i~~~~~~----------~~ 630 (900)
+|..++..+...+... .+++++.||||||||+++..++..+...+. .++.+..+.-. ..
T Consensus 29 ~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 4556777776666431 237999999999999999999998866443 33333222110 00
Q ss_pred cccccccCCCCCCcccccccchhH--HHHhCCCeEEEEccccccCHHHHHHHHHHhhC
Q 046258 631 HSVSRLIGAPPGYVGHEEGGQLTE--AVRRRPYSVVLFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 631 ~~~~~l~G~~~g~~g~~~~~~l~~--~~~~~~~~vlllDEidk~~~~~~~~Ll~~ld~ 686 (900)
.....+++..+...+ ....+.. ......+.+|++||+..+++..+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 011122221110000 0000000 00112468999999999999999999998863
No 211
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.25 E-value=0.00021 Score=91.68 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc-------cccccCCCCCCcccccccchhHHHHhCCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS-------VSRLIGAPPGYVGHEEGGQLTEAVRRRPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~-------~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~ 662 (900)
.+|++||||||||.||++++......+.+.+.|+..+..++.. .+++++..|.. +...-..+....++...+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~-~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccc-hHHHHHHHHHHHHhcCCe
Confidence 5999999999999999999987766577888888866442211 12333322111 000012233445567789
Q ss_pred EEEEccccccCHH
Q 046258 663 VVLFDEVEKAHIS 675 (900)
Q Consensus 663 vlllDEidk~~~~ 675 (900)
++++|+++.+-|.
T Consensus 1163 ~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1163 VIVVDSVAALTPK 1175 (1706)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEeCchHhcCcc
Confidence 9999999855433
No 212
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.24 E-value=0.00035 Score=76.28 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=54.4
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEec-ccccccccccccccCCCCCCcccccccchhHHHHhCCCeE
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRID-MSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSV 663 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~-~~~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~v 663 (900)
.|.+.++++||+|+|||++.++++..+... ...++.+. -.++........+.-...+.........+..+++. ...+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~Pdv 199 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRE-DPDI 199 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-CCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhh-CcCE
Confidence 455679999999999999999999888643 23333322 22221111000000000000000001123334444 4589
Q ss_pred EEEccccccCHHHHHHHHHHhhCC
Q 046258 664 VLFDEVEKAHISVFNTLLQVLDDG 687 (900)
Q Consensus 664 lllDEidk~~~~~~~~Ll~~ld~g 687 (900)
|++||+- +++....+++....|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999997 677778888877654
No 213
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=97.18 E-value=0.0022 Score=62.02 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhhcc--chhHHHHHcCCCHHHHHHHHH
Q 046258 84 PASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS--QIGDLFKEAGVAVARVKSEVE 142 (900)
Q Consensus 84 ~~s~~~~~~l~~A~~~a~~~g~~~i~~e~lllgll~~~--~~~~~L~~~gi~~~~l~~~~~ 142 (900)
.||+.++++|+.|..+|..+|+.+|+++||++|+++++ .+..+|+++|++...+++.+.
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~ 84 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA 84 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999864 578899999999999999887
No 214
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.09 E-value=0.0011 Score=65.08 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=66.4
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc----ccccccccccc------cCCCCCCcccccc--------
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS----EYMEQHSVSRL------IGAPPGYVGHEEG-------- 649 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~----~~~~~~~~~~l------~G~~~g~~g~~~~-------- 649 (900)
.+.+++++++|.|||++|-.+|-...+.+.++..+..- .+.+......| .|. ||.-....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--ccccCCCCcHHHHHHH
Confidence 35699999999999999999998887767676665321 11111222222 221 33321110
Q ss_pred -cchhH---HHHhCCCeEEEEcccccc---CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHH
Q 046258 650 -GQLTE---AVRRRPYSVVLFDEVEKA---HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL 715 (900)
Q Consensus 650 -~~l~~---~~~~~~~~vlllDEidk~---~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~ 715 (900)
..+.. .+....+.+|+|||+..+ .---.+.++++|.+ .+.+.-+|+|+|..++.+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-----------RPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-----------SCTTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-----------CcCCCEEEEECCCCcHHH
Confidence 01111 122246899999999542 11112346677765 245677999999875443
No 215
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.05 E-value=0.0035 Score=80.66 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCCCCchHHHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 178 LDPVIGRDEEIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 178 ~~~~iG~~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
...++||+.++.+|.+.|... ...-+.|+|+.|+|||+||+.+++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 345899999999999999643 2334789999999999999988765
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.01 E-value=0.011 Score=65.95 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=57.2
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc-----ccccccCCCCCCcc---cccccchhHHHHh-
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH-----SVSRLIGAPPGYVG---HEEGGQLTEAVRR- 658 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~-----~~~~l~G~~~g~~g---~~~~~~l~~~~~~- 658 (900)
...++|+||+|+|||+++..||..+...+..+..+++..+.... ......|.+ -|.. .++.......+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~-~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ-VYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCC-EECCTTCSCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCc-eeeccccCCHHHHHHHHHHHH
Confidence 45889999999999999999999987766777777766543211 111222321 1111 1111112233333
Q ss_pred --CCCeEEEEccccccC----HHHHHHHHHHh
Q 046258 659 --RPYSVVLFDEVEKAH----ISVFNTLLQVL 684 (900)
Q Consensus 659 --~~~~vlllDEidk~~----~~~~~~Ll~~l 684 (900)
..+.++++|....++ +.....+..++
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 357899999998755 44445444443
No 217
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.0009 Score=78.03 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=55.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc----------cccccccccCCCCCCcccccccchhHHHHhC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM----------EQHSVSRLIGAPPGYVGHEEGGQLTEAVRRR 659 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~----------~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~ 659 (900)
.+++.||||||||+++..+...+...+.++..+..+.-. ....+.++++..+....... ....
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~-------~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNH-------LEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSS-------SSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhh-------cccc
Confidence 699999999999999999998876655454443222100 01122233332210000000 0112
Q ss_pred CCeEEEEccccccCHHHHHHHHHHhhC
Q 046258 660 PYSVVLFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 660 ~~~vlllDEidk~~~~~~~~Ll~~ld~ 686 (900)
+..+|++||+..++...+..|+..+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 568999999999999988888887753
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.002 Score=65.55 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
.+..++|+||||+|||++++.++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999976643
No 219
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.00049 Score=68.01 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=22.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.+.|+||+|+|||++.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999999875
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.98 E-value=0.0022 Score=83.30 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=53.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhc--ccccc------------hHHHHHHHH
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAG--AKYRG------------EFEERLKAV 263 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g--~~~~g------------~~~~~l~~~ 263 (900)
..+.+++|+||||||||++|.+++...... +.+++.+++...... .+..| ..+..+..+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 456789999999999999999999877554 334666665532100 01111 234444444
Q ss_pred HHHHHHcCCCeEEEEcchhhhhh
Q 046258 264 LKEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 264 ~~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
...+++. .+.+||||+++.+.+
T Consensus 1498 ~~lvr~~-~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1498 DALARSG-AVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHT-CCSEEEESCGGGCCC
T ss_pred HHHHhcC-CCCEEEEcChhHhcc
Confidence 4445544 477899999987775
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00014 Score=71.66 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=19.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
-.+++||+|+||||++-.++.+...
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999666666533
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.93 E-value=0.0019 Score=67.31 Aligned_cols=94 Identities=23% Similarity=0.425 Sum_probs=49.4
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEeccc-ccccccccccccCCCCCCccccc---ccchhHHHHhCCC
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRIDMS-EYMEQHSVSRLIGAPPGYVGHEE---GGQLTEAVRRRPY 661 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~-~~~~~~~~~~l~G~~~g~~g~~~---~~~l~~~~~~~~~ 661 (900)
|.+.++|+||+|+|||++.++|+..+... ...+....-. ++....... ++. ...+|... ...+..++.. ..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~-~v~--q~~~gl~~~~l~~~la~aL~~-~p 99 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS-IVN--QREVGEDTKSFADALRAALRE-DP 99 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-EEE--EEEBTTTBSCHHHHHHHHHHH-CC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce-eee--HHHhCCCHHHHHHHHHHHHhh-CC
Confidence 44579999999999999999999887542 2333222210 111000000 000 00011111 1223445555 44
Q ss_pred eEEEEccccccCHHHHHHHHHHhhC
Q 046258 662 SVVLFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 662 ~vlllDEidk~~~~~~~~Ll~~ld~ 686 (900)
.++++||+- +++....+++....
T Consensus 100 ~illlDEp~--D~~~~~~~l~~~~~ 122 (261)
T 2eyu_A 100 DVIFVGEMR--DLETVETALRAAET 122 (261)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred CEEEeCCCC--CHHHHHHHHHHHcc
Confidence 899999996 56555555554443
No 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.92 E-value=0.0046 Score=75.16 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCchHHHHHHHHHHcc-CCCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 181 VIGRDEEIRRVVRILSR-RTKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 181 ~iG~~~~i~~l~~~l~~-~~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
.+||+.++.++.+.|.. ....-+.|+|++|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999999876 33445788999999999999999853
No 224
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.88 E-value=0.0017 Score=75.68 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=34.1
Q ss_pred hcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHH
Q 046258 561 IGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAE 610 (900)
Q Consensus 561 ~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~ 610 (900)
+|.+..+..|.+.+.... ......+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 488888888888875431 12235788999999999999999996
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.87 E-value=0.0057 Score=68.16 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=58.1
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc-----ccccccCCCC--CCcccccccchhHHHH---
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH-----SVSRLIGAPP--GYVGHEEGGQLTEAVR--- 657 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~-----~~~~l~G~~~--g~~g~~~~~~l~~~~~--- 657 (900)
...++|+|++|+|||+++..||..+...+.+...++|..+.... ......|.+. .+.+.++...+..++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999988777777788877653211 1112222210 0112222222223333
Q ss_pred hCCCeEEEEccccccC--HHHHHHHHHH
Q 046258 658 RRPYSVVLFDEVEKAH--ISVFNTLLQV 683 (900)
Q Consensus 658 ~~~~~vlllDEidk~~--~~~~~~Ll~~ 683 (900)
...+.++++|.....+ ......|..+
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i 207 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQI 207 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHH
Confidence 3457999999998776 3344444433
No 226
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.86 E-value=0.0015 Score=64.50 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=51.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc---ccccccccccccCCCCCCcccccccchhHHHHh--CCCeEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS---EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRR--RPYSVV 664 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~---~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~--~~~~vl 664 (900)
-.+++||.|+|||+.+-.++......+.+...+... .+.+....+++ |-.....+... ..+.... .+..+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~---~~~i~~~~~~~~dvV 85 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKN---SREILKYFEEDTEVI 85 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTT-SCEEECEEESS---STHHHHHCCTTCSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCC---HHHHHHHHhccCCEE
Confidence 577999999999988777776664444555544311 11111111221 21100011111 1233332 246899
Q ss_pred EEccccccCHHHHHHHHHHhhC
Q 046258 665 LFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 665 llDEidk~~~~~~~~Ll~~ld~ 686 (900)
++||+.-++++....|..+.+.
T Consensus 86 iIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 86 AIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp EECSGGGSCTHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 9999999988887766555553
No 227
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.86 E-value=0.0011 Score=75.29 Aligned_cols=45 Identities=13% Similarity=0.371 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhcCC
Q 046258 183 GRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGD 228 (900)
Q Consensus 183 G~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~ 228 (900)
++...+..+...+.... .+++|.|+||||||+++..++..+...+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 56677787777776644 3899999999999999999999886543
No 228
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.84 E-value=0.0025 Score=74.21 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHccC---CCCCeEEEcCCCCcHHHHHHHHHH
Q 046258 182 IGRDEEIRRVVRILSRR---TKNNPVLIGEPGVGKTAVVEGLAQ 222 (900)
Q Consensus 182 iG~~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~ 222 (900)
+||+.++.++.+.|... ...-+.|+|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 69999999999998653 234578999999999999999996
No 229
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.01 Score=57.17 Aligned_cols=32 Identities=38% Similarity=0.413 Sum_probs=25.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+||||+|||++|+.| +.+ .+..++++++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-----g~~~i~~~~~ 34 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-----GAKVIVMSDV 34 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-----TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-----CCcEEEHhHH
Confidence 5899999999999999999 665 3445565554
No 230
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.73 E-value=0.011 Score=67.80 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=85.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh--h--hccc-----cc--------------chH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL--V--AGAK-----YR--------------GEF 256 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l--~--~g~~-----~~--------------g~~ 256 (900)
..|+|+.|.+|+|||++++.|...+....-|. .++|+.+|.... . .+.. .. .+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998887666663 688999997642 1 0100 00 111
Q ss_pred HHHHHHHHH-----------HHHH--------------------------cCCCeEEEEcchhhhhhCCCCCChhhHHHh
Q 046258 257 EERLKAVLK-----------EVEE--------------------------AEGKVILFIDEIHLVLGAGRTEGSMDAANL 299 (900)
Q Consensus 257 ~~~l~~~~~-----------~~~~--------------------------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~ 299 (900)
+.+.+.+.. .+.. .-..++|+|||++.++.... .+....
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~----~~~~~~ 366 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG----KKVEEL 366 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC----HHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh----HHHHHH
Confidence 112111000 0000 01136899999998875321 234445
Q ss_pred HhhhhhcC---cEEEEEecCHHHHHHHhhccHHHHcccce-eeecCCChHHHHHHH
Q 046258 300 FKPMLARG---QLRCIGATTLEEYRKYVEKDAAFERRFQQ-VYVAEPSVPDTVSIL 351 (900)
Q Consensus 300 L~~~l~~g---~irvI~att~~~~~~~~~~d~al~~Rf~~-i~i~~P~~~e~~~il 351 (900)
|.++...| .+.+|.+|.+... -.+.+.++.-|.. |.+...+..+...++
T Consensus 367 L~~Iar~GRa~GIhLIlaTQRPs~---d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 367 IARIAQKARAAGIHLILATQRPSV---DVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp HHHHHHHCTTTTEEEEEEESCCCT---TTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHhhCCeEEEEEecCccc---ccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 55555543 5889998865431 0256677777764 666666666666565
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00096 Score=65.04 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
..++|+|+||+||||+++.|++.+ +..++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccchH
Confidence 468999999999999999999988 444777665443
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.70 E-value=0.0007 Score=66.52 Aligned_cols=25 Identities=44% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999998
No 233
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.67 E-value=0.003 Score=69.51 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=50.7
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEecccccccccccccccCCCCCCccc-----cc---ccchhHHH
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRIDMSEYMEQHSVSRLIGAPPGYVGH-----EE---GGQLTEAV 656 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g~-----~~---~~~l~~~~ 656 (900)
.+.+.++++||+|+|||++.++|+..+... ...++.++-. . .. ......+|+.. .. ...+...+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~--e~----~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I--EY----VFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-C--CS----CCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-H--hh----hhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 345679999999999999999999987543 3444444321 1 00 00111112211 11 12233344
Q ss_pred HhCCCeEEEEccccccCHHHHHHHHHHhhC
Q 046258 657 RRRPYSVVLFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 657 ~~~~~~vlllDEidk~~~~~~~~Ll~~ld~ 686 (900)
+. ...++++||+- +++....+++....
T Consensus 207 ~~-~pd~illdE~~--d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 207 RE-DPDVIFVGEMR--DLETVETALRAAET 233 (372)
T ss_dssp TS-CCSEEEESCCC--SHHHHHHHHHHHTT
T ss_pred hh-CcCEEEECCCC--CHHHHHHHHHHHhc
Confidence 44 45799999996 45544445555443
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0022 Score=64.76 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
+.-++|+||||+|||+++..++. . . +..++.++..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~--------~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S--------GKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H--------CSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c--------CCcEEEEECC
Confidence 44578999999999999999998 2 1 3446667654
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.64 E-value=0.0049 Score=66.93 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=50.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCcc---cccccch----hHHHHhCCC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVG---HEEGGQL----TEAVRRRPY 661 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~g---~~~~~~l----~~~~~~~~~ 661 (900)
..++++||||+|||+|+..++..+.....+++.++..+..... ..+-+|..+...- ......+ ...++....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 3688999999999999999998876556678888876533221 1122222211000 0001111 122333556
Q ss_pred eEEEEccccccCH
Q 046258 662 SVVLFDEVEKAHI 674 (900)
Q Consensus 662 ~vlllDEidk~~~ 674 (900)
.++++|.+..+.+
T Consensus 141 dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 141 DLIVVDSVAALVP 153 (356)
T ss_dssp SEEEEECTTTCCC
T ss_pred CeEEehHhhhhcC
Confidence 8999999987654
No 236
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.63 E-value=0.0027 Score=74.79 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=33.8
Q ss_pred HHhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHH
Q 046258 559 RLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAE 610 (900)
Q Consensus 559 ~l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~ 610 (900)
.++|.+..+..+.+.+... ......++++||+|+|||+||+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3778888888887777432 11234789999999999999998864
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.0032 Score=66.65 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=28.7
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..++|+||||+|||++|+.|++.+.. .++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechHh
Confidence 36889999999999999999988732 4667776443
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.00099 Score=64.94 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+.. +++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchH
Confidence 5899999999999999999999843 6776665443
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.58 E-value=0.0026 Score=64.69 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS 625 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 625 (900)
.++|+||+|+|||+|++.++..+.....+++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 688999999999999999997664434466665543
No 240
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.58 E-value=0.0033 Score=62.63 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc---cccccccccccCCCCCCcccccccchhHHHHhCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE---YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~---~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
-.+++||.|+|||+.+-.++......+.+.+.+...- +.+....+++ |......+......+.+.+. .++.+|++
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 4569999999999888777766655455555554221 1111122222 22111111111112222221 24789999
Q ss_pred ccccccCHHHHHHHHHHhhC
Q 046258 667 DEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 667 DEidk~~~~~~~~Ll~~ld~ 686 (900)
||+.-++++..+.|..+.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHhhC
Confidence 99999988877665555443
No 241
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.53 E-value=0.0038 Score=64.79 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=29.2
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..++|+||||+|||++|+.|++.+.. .++.+|...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHH
Confidence 47899999999999999999998843 4566666554
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.49 E-value=0.0058 Score=66.52 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=49.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc---ccccccchhH----HHHhCCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV---GHEEGGQLTE----AVRRRPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~---g~~~~~~l~~----~~~~~~~~ 662 (900)
.++++||||+|||+||..++......+.+++.++...-.... ....+|.....+ .......+.. .++.....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 588999999999999999987766556678888876432221 112223211100 0001111112 22344568
Q ss_pred EEEEccccccC
Q 046258 663 VVLFDEVEKAH 673 (900)
Q Consensus 663 vlllDEidk~~ 673 (900)
+|++|++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999998775
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=0.0012 Score=65.77 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+..++|+|+||+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999998
No 244
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0017 Score=63.41 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=23.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+.+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999988
No 245
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.46 E-value=0.079 Score=61.58 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
...++|+|+||||||+++..++..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999887654
No 246
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.46 E-value=0.0019 Score=69.01 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcc
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDE 280 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 280 (900)
..++|+||+|||||++++.||+.+ +..++.+|.-....|-. .|.-. ...++.. .-+. .|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~-igTak----p~~~e~~--gvph-~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMD-IGTAK----PSRELLA--RYPH-RLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCC-TTTTC----CCHHHHH--HSCE-ETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCC-cccCC----CCHHHHc--CCCE-EEeec
Confidence 358899999999999999999988 66677776433221111 11000 0000111 1244 77776
Q ss_pred hhhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHH
Q 046258 281 IHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLE 318 (900)
Q Consensus 281 i~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~ 318 (900)
++-...-+....-..+...+..++.+|.+.+++.++.-
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 64432111001111233455566677877777666644
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0083 Score=61.43 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
...-++|+||||+|||+++..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568999999999999999999863
No 248
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.41 E-value=0.0017 Score=63.19 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=22.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999988
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.40 E-value=0.0098 Score=64.99 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-------ccc-------ccchHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-------GAK-------YRGEFEERLKAVL 264 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------g~~-------~~g~~~~~l~~~~ 264 (900)
...-++|+|+||+|||++|..++......+. ++++++...-.. |.. .....+..+ ..+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~-------~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGG-------TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-------eEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHH
Confidence 3446888999999999999999987755432 367776543110 100 011222222 333
Q ss_pred HHHHHcCCCeEEEEcchhhhhh
Q 046258 265 KEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 265 ~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
..+....+..+|+||.+..+.+
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHhcCCCCEEEEeChHHhcc
Confidence 3333334456899999999874
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.017 Score=59.10 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
.+..++|+||||+|||+++..++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456899999999999999888876644
No 251
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0016 Score=63.98 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
.+.+++|+|+||+||||+++.|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3557999999999999999999998
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.35 E-value=0.0019 Score=63.31 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.++|+||||+|||++|+.||+.+.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999983
No 253
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.34 E-value=0.0075 Score=70.91 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCeEEEEccccccCHHHHHHHHHHhh
Q 046258 660 PYSVVLFDEVEKAHISVFNTLLQVLD 685 (900)
Q Consensus 660 ~~~vlllDEidk~~~~~~~~Ll~~ld 685 (900)
+..+|++||++.++...+..|+..+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 45799999999999888888887774
No 254
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.33 E-value=0.0026 Score=63.45 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCCCCCCeEEEEeccCCchHHHHHHHHHHHh
Q 046258 582 GRPQQPTGSFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 582 ~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
..+.+|. .++|+|+||+|||++|+.|++.+
T Consensus 15 ~~~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 15 VPRGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp -CCCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 3344553 68999999999999999999988
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.32 E-value=0.0019 Score=63.60 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=29.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++|.|+||+|||++|+.|++.+...+.++..+++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 4899999999999999999999865444566666544
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.31 E-value=0.0021 Score=62.01 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|+|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 257
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.30 E-value=0.0017 Score=62.66 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
...+++|+|++|+||||+++.|+..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999988
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.28 E-value=0.0059 Score=66.77 Aligned_cols=83 Identities=27% Similarity=0.284 Sum_probs=48.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCC---cccccccchhH----HHHhCCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGY---VGHEEGGQLTE----AVRRRPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~---~g~~~~~~l~~----~~~~~~~~ 662 (900)
.++++||||+|||+||..++......+.+++.+++..-.+.. ...-+|..... ........+.. .++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 588999999999999999888775555678888876532221 11122221110 00001111222 22335568
Q ss_pred EEEEccccccC
Q 046258 663 VVLFDEVEKAH 673 (900)
Q Consensus 663 vlllDEidk~~ 673 (900)
+|++|.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998764
No 259
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.27 E-value=0.0021 Score=62.99 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999988
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.27 E-value=0.0082 Score=65.39 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=49.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccccccccCCCCCCc--c-cccccchh----HHHHhCCCe
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV--G-HEEGGQLT----EAVRRRPYS 662 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~G~~~g~~--g-~~~~~~l~----~~~~~~~~~ 662 (900)
.++++||||+|||+||..++......+.+++.++...-.+... +.-+|.....+ . ......+. ..++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 5899999999999999999987765566788888754322211 11122211000 0 00011122 233345678
Q ss_pred EEEEccccccC
Q 046258 663 VVLFDEVEKAH 673 (900)
Q Consensus 663 vlllDEidk~~ 673 (900)
+|++|.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998775
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.0025 Score=63.49 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=22.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.++|+||||+|||++|+.|++.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999998
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.24 E-value=0.0022 Score=63.11 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=28.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++|+||||+|||++++.|++.+...+.++..+++++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 5899999999999999999998864332355565544
No 263
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.23 E-value=0.0036 Score=63.14 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=27.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++++||||+|||++++.++. . ...+.+.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 589999999999999999998 2 245777777654
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.0054 Score=62.86 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC------CCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD------DENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~ 626 (900)
.++|+||||+|||+|++.++..... .....+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6889999999999999999985321 135677777655
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0028 Score=61.17 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.++|.||||+|||++|+.|++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999983
No 266
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.21 E-value=0.0026 Score=64.11 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 585 ~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.+|. .|+|.||||+||+|.|+.|++.+ .+..|+++++..
T Consensus 27 ~k~k-iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR 65 (217)
T 3umf_A 27 AKAK-VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR 65 (217)
T ss_dssp TSCE-EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred cCCc-EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence 3453 67889999999999999999988 577888877643
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.18 E-value=0.0092 Score=62.82 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.++|+||+|+|||+|++.++..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 6889999999999999999976643
No 268
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.18 E-value=0.008 Score=61.62 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=56.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccc--ccccccCCC-CCC-cccc--cc-------cchhHHH
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQH--SVSRLIGAP-PGY-VGHE--EG-------GQLTEAV 656 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~--~~~~l~G~~-~g~-~g~~--~~-------~~l~~~~ 656 (900)
.++++||+|+|||.+|..++..+. ...++.+....+.... .... +|.. .+. .|.. .. +.+....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~--~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSC--SCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 499999999999999998887762 2234444333332111 0111 1111 000 0000 00 1111111
Q ss_pred H--hCCCeEEEEccccccCHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCC
Q 046258 657 R--RRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 711 (900)
Q Consensus 657 ~--~~~~~vlllDEidk~~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~ 711 (900)
. .....+|++||++.++......++..+. ...++.+|+++.
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~--------------~~~~l~LSATp~ 229 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI--------------APFRLGLTATFE 229 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC--------------CSEEEEEEESCC
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhcc--------------CCEEEEEecCCC
Confidence 1 1346899999999998766665555543 234567777664
No 269
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.17 E-value=0.014 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQ 222 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~ 222 (900)
.+.-+.|+||+|+||||+++.|+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445689999999999999999994
No 270
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.17 E-value=0.0045 Score=60.01 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=27.9
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
...++|+||+|+|||++++.|+..+ ..+.+|...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 3468899999999999999999887 2456666554
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.17 E-value=0.0065 Score=65.61 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=48.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc-ccccccccccccCCCCCCc---ccccccchhHHHHhCCCeEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS-EYMEQHSVSRLIGAPPGYV---GHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~-~~~~~~~~~~l~G~~~g~~---g~~~~~~l~~~~~~~~~~vll 665 (900)
.++++||+|+|||+|.++|+..+.. ....+.++-. ++.-. .....+ +++ |......+..+++. ...+++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~~~i----~~~~ggg~~~r~~la~aL~~-~p~ili 245 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHKNYT----QLFFGGNITSADCLKSCLRM-RPDRII 245 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCSSEE----EEECBTTBCHHHHHHHHTTS-CCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cchhEE----EEEeCCChhHHHHHHHHhhh-CCCEEE
Confidence 5999999999999999999987754 3345555532 21100 000000 111 11111122333333 458999
Q ss_pred EccccccCHHHHHHHHHHhhC
Q 046258 666 FDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~ 686 (900)
+||+-. .++++. ++.+..
T Consensus 246 ldE~~~--~e~~~~-l~~~~~ 263 (330)
T 2pt7_A 246 LGELRS--SEAYDF-YNVLCS 263 (330)
T ss_dssp ECCCCS--THHHHH-HHHHHT
T ss_pred EcCCCh--HHHHHH-HHHHhc
Confidence 999876 455553 444443
No 272
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.14 E-value=0.0022 Score=62.40 Aligned_cols=33 Identities=42% Similarity=0.595 Sum_probs=26.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+||||+|||++|+.||+.+. +..+|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence 489999999999999999999983 445565543
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0074 Score=61.96 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=29.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++++||||+|||+++..++......+.+.+.++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 6899999999999999988776654455677766543
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.13 E-value=0.0074 Score=63.71 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCC--CCceeEecccccccccccccccCCCCCCc---ccccccch-hH---H--
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDD--ENLLVRIDMSEYMEQHSVSRLIGAPPGYV---GHEEGGQL-TE---A-- 655 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~--~~~~i~i~~~~~~~~~~~~~l~G~~~g~~---g~~~~~~l-~~---~-- 655 (900)
|.+.++++||||+|||+|+-.++...... +..++.+|..+-..+.. ++-+|-....+ -......+ .. .
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-LRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-HHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 34468999999999999988776655432 56788888765332211 22223221100 00011111 11 1
Q ss_pred -HHhCCCeEEEEccccccC
Q 046258 656 -VRRRPYSVVLFDEVEKAH 673 (900)
Q Consensus 656 -~~~~~~~vlllDEidk~~ 673 (900)
++.....+|++|-|..+.
T Consensus 106 ~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCTTCCEEEEEECSTTCB
T ss_pred HhhccCceEEEEecccccc
Confidence 234466899999998763
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.11 E-value=0.0045 Score=59.86 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|++|+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 276
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.11 E-value=0.0077 Score=65.60 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------hcccc------cchHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-------AGAKY------RGEFEERLKAVLK 265 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~g~~~------~g~~~~~l~~~~~ 265 (900)
....++|+|+||+|||++|..++......+ .++++++..... .|... .....+.+..++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 445689999999999999999998775543 337777763211 01000 0001122333333
Q ss_pred HHHHcCCCeEEEEcchhhhhh
Q 046258 266 EVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 266 ~~~~~~~~~iL~iDEi~~l~~ 286 (900)
.+....+..+|+||.+..+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 333334456799999998864
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.09 E-value=0.006 Score=62.85 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=28.2
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..|+|+||||+|||++|+.|++.+ .+..++++++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~ 63 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDL 63 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHH
Confidence 379999999999999999999888 4566666554
No 278
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.08 E-value=0.0027 Score=67.07 Aligned_cols=99 Identities=22% Similarity=0.148 Sum_probs=52.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcch
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEI 281 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 281 (900)
-++|.||+|||||+++..||+.+ +..++..|--.+-.+-. .|. .....-+..+-+. -|||.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igT------akp~~~E~~gvph-hlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGT------AKITAEEMDGVPH-HLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTT------TCCCHHHHTTCCE-ESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecC------CCCCHHHHcCCCE-EEeccC
Confidence 46788999999999999999887 55565554332222111 111 0000012223344 677755
Q ss_pred hhhhhCCCCCChhhHHHhHhhhhhcCcEEEEEecCHH
Q 046258 282 HLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLE 318 (900)
Q Consensus 282 ~~l~~~~~~~~~~~~~~~L~~~l~~g~irvI~att~~ 318 (900)
+---.-.....-.++...+..+..+|.+.+++-+|--
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 3211000001112344556666778888877766643
No 279
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.08 E-value=0.0065 Score=61.69 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=27.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcC------CCCceeEecccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFD------DENLLVRIDMSE 626 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~ 626 (900)
..+.|+||+|+|||+|++.|+..+.. .....+.++...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 46889999999999999999975432 133466666543
No 280
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.08 E-value=0.0055 Score=60.07 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=50.7
Q ss_pred EEEEeccCCchHH-HHHHHHHHHhcCCCCceeEeccc---ccccccccccccCCCCCCcccccccchhHHHHhCCCeEEE
Q 046258 590 SFLFLGPTGVGKT-ELAKALAEQLFDDENLLVRIDMS---EYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 590 ~~ll~Gp~GtGKT-~lA~~la~~l~~~~~~~i~i~~~---~~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vll 665 (900)
-.+++||.|+||| +|.+++.+.... +.+.+.+.-. .|.+ .-.+.+ |.....+-......+....+ +..||+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~-~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSS-SFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGG-SCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchh-hhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 3669999999999 999999988766 3455555422 2221 111221 11000000111122333332 467999
Q ss_pred EccccccCHHHHHHHHHHhhC
Q 046258 666 FDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~ 686 (900)
+||+.-+ +++...+..+.+.
T Consensus 97 IDEaQFf-k~~ve~~~~L~~~ 116 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMANA 116 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHHT
T ss_pred EEchhhh-HHHHHHHHHHHHC
Confidence 9999999 6655555444443
No 281
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.07 E-value=0.0027 Score=63.55 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=30.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.++|.||||+||+|.|+.|++.+ .+..|+++++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence 48899999999999999999988 578888877643
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.06 E-value=0.038 Score=63.32 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCeEEEEcccccc----CHHHHHHHHHHhhCCeeecCCCceeecCCeEEEEccCCCcHHHhcccCCccchHHHHHHHHHH
Q 046258 660 PYSVVLFDEVEKA----HISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE 735 (900)
Q Consensus 660 ~~~vlllDEidk~----~~~~~~~Ll~~ld~g~~~d~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (900)
|+-||++||+..+ +.++...|.++...|+ -..+.+|++|..+.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----------a~GIhLIlaTQRPs----------------------- 389 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKAR----------AAGIHLILATQRPS----------------------- 389 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT----------TTTEEEEEEESCCC-----------------------
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----------hCCeEEEEEecCcc-----------------------
Confidence 3458999999865 4567777888888765 13456677666543
Q ss_pred HHhcccHHHHhcccceeecCCCCHHHHHHHHH
Q 046258 736 VRKHFRPELLNRLDEIVVFDPLSHEQLRKVAR 767 (900)
Q Consensus 736 ~~~~~~~~ll~R~~~~i~f~pl~~e~~~~I~~ 767 (900)
...++..+.+-|...|.|.--+..|...|+.
T Consensus 390 -~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 390 -VDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp -TTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred -cccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 2346677777777778888888887777753
No 283
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.05 E-value=0.01 Score=59.92 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=21.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
-++++||+|+||||++..++.+....
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46778999999999999888887554
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.03 E-value=0.053 Score=60.57 Aligned_cols=97 Identities=23% Similarity=0.405 Sum_probs=57.5
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCC-CCceeEecccccccccc-----cccccCCC--CCCcccccccchhHHH-
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDD-ENLLVRIDMSEYMEQHS-----VSRLIGAP--PGYVGHEEGGQLTEAV- 656 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~-~~~~i~i~~~~~~~~~~-----~~~l~G~~--~g~~g~~~~~~l~~~~- 656 (900)
++...++|+|++|+|||+++-.||..+... +.+...+|+..+..... .....|-+ +...+.++...+...+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 344589999999999999999999998776 77888888876532111 01111110 0011122222223333
Q ss_pred --HhCCCeEEEEccccccCH--HHHHHHHH
Q 046258 657 --RRRPYSVVLFDEVEKAHI--SVFNTLLQ 682 (900)
Q Consensus 657 --~~~~~~vlllDEidk~~~--~~~~~Ll~ 682 (900)
+...+.++|+|=...++. ...+.|..
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~ 207 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 207 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHH
Confidence 235778999998766653 44444443
No 285
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.03 E-value=0.0034 Score=65.11 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=26.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
.++|+||||+||||+|+.||..+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 47889999999999999999988 555776654
No 286
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.02 E-value=0.0037 Score=60.39 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.0038 Score=61.28 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=29.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYME 629 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~ 629 (900)
.++|+|+||+|||++++.|++.+. .+..+|++.+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHHHH
Confidence 699999999999999999999832 356677766543
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.01 E-value=0.0055 Score=60.23 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=28.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
.++|.|+||+||||+++.|++.+... +..+..++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-------g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-------GINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-------TCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-------CceEEEEECChH
Confidence 47899999999999999999998543 233566665444
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.01 E-value=0.0027 Score=62.67 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3458899999999999999999988
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.00 E-value=0.0041 Score=64.50 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=22.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.++++||||+|||++|+.||+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 488999999999999999999883
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.99 E-value=0.054 Score=58.13 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeE
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR 621 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 621 (900)
+...++|+||+|+||||+++.|+..+......+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 33578899999999999999999887654444433
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.99 E-value=0.0025 Score=67.20 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=52.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcch
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEI 281 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 281 (900)
-++|+||+|+|||++|..||+.+ +..++..|--.+-.+-. .|.- +--.++.. .-+. -|||.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~-igTa----kp~~~E~~--~v~h-hlid~~ 73 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMD-IGTA----KPNAEELL--AAPH-RLLDIR 73 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCC-TTTT----CCCHHHHH--HSCE-ETSSCB
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEeccccccccccc-ccCC----CCCHHHHc--CCCE-EEeccC
Confidence 36788999999999999999987 55666655433322111 1100 00001111 1244 667755
Q ss_pred hhhhhCCCC--CChhhHHHhHhhhhhcCcEEEEEecCHH
Q 046258 282 HLVLGAGRT--EGSMDAANLFKPMLARGQLRCIGATTLE 318 (900)
Q Consensus 282 ~~l~~~~~~--~~~~~~~~~L~~~l~~g~irvI~att~~ 318 (900)
+-- ...+ ..-.++...+..+..+|.+-+++-+|--
T Consensus 74 ~~~--e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 74 DPS--QAYSAADFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp CTT--SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred Ccc--ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 321 0111 1112334566667778888877777743
No 293
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.98 E-value=0.022 Score=60.91 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCCCeEEEEeccCCchHHHHHHHHHHHhcC--CCCceeEeccccc
Q 046258 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFD--DENLLVRIDMSEY 627 (900)
Q Consensus 585 ~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~--~~~~~i~i~~~~~ 627 (900)
.+|. .+.|.||+|+||||+++.|+..+.. .......+.+..|
T Consensus 90 ~~p~-iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPY-IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCE-EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4453 6789999999999999999988852 1234555555544
No 294
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.98 E-value=0.016 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..-+.|+||+|+||||+++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999865
No 295
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.026 Score=59.28 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
...-++|+||||+||||++..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 34568999999999999999999877654
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.96 E-value=0.0039 Score=60.28 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=26.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.+.|+||+|+|||++++.|+..+. +..+|...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~ 37 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQ 37 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccH
Confidence 489999999999999999999883 34555543
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.96 E-value=0.003 Score=61.71 Aligned_cols=33 Identities=39% Similarity=0.569 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++++.|++.+ .+..++++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d~~ 45 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS-----GLKYINVGDL 45 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHHHH
Confidence 59999999999999999999988 3445555544
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.94 E-value=0.0038 Score=61.68 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0042 Score=59.84 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=23.1
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.+++|.|++|+|||++|+.||+.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999984
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.92 E-value=0.0058 Score=60.80 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=28.7
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
..+.|+||+|+|||++++.|+..+...+...+.+|...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 46889999999999999999999863233334566543
No 301
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.004 Score=63.06 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999988
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.91 E-value=0.0043 Score=61.83 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|++|+|||++|+.|++.+ .+..++...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcC
Confidence 59999999999999999999988 3455665554
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.89 E-value=0.0047 Score=61.57 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|++|+||||+++.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999987
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.004 Score=62.00 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+..++|+|+||+||||+++.|++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999988
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.87 E-value=0.004 Score=63.04 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.|+||+|||++|+.|++.+. +..++++++
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~~ 38 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH-----AAHLATGDM 38 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----ceEEehhHH
Confidence 699999999999999999999883 445555443
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.0037 Score=60.37 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|+|+||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 655
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.85 E-value=0.0064 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
..++|+|+||+||||+++.|+..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999998843
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.84 E-value=0.0075 Score=59.17 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=29.8
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS 625 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 625 (900)
..++|+|++|+|||++++.|+..+...+.+++.++..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4688999999999999999999986555556666543
No 309
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.84 E-value=0.0045 Score=60.62 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+. +..+|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchH
Confidence 399999999999999999999883 345555544
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.81 E-value=0.0043 Score=61.80 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=27.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|++|+|||++|+.|++.+ .+..++++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d~~ 49 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDL 49 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CceEEeHHHH
Confidence 68899999999999999999887 3456666554
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.79 E-value=0.0048 Score=60.73 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=28.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..+.|+||||+||||+++.|+... ....+.++...+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 368899999999999999999763 235667776554
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.79 E-value=0.013 Score=58.32 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=29.7
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
..+.++||+|+|||++++.|+..+.....+++.+++..+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 468899999999999999999987543445655655443
No 313
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.78 E-value=0.0044 Score=60.72 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=27.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+ .+..++.+.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d~~ 38 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTGDI 38 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----TCEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEecHHHH
Confidence 58899999999999999999987 3455666543
No 314
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.78 E-value=0.017 Score=59.11 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+++++||+|+|||.++..++...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998888765
No 315
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.76 E-value=0.017 Score=62.93 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHccCCCCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 183 GRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 183 G~~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
|..+.++.+ +. .....++++||+|+||||+.++++..+..
T Consensus 110 g~~~~l~~l---~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 110 GMGEVFKRV---SD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp TCCHHHHHH---HH-CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHH---Hh-CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 444555444 22 33447999999999999999999988743
No 316
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.76 E-value=0.042 Score=62.39 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
..|+|+.|.+|+|||++++.+...+....-|. .++|+-+|+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~---~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPE---DVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCc---eEEEEEECCch
Confidence 57999999999999999999987665544452 57788888654
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.76 E-value=0.0043 Score=62.88 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=27.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.||||+|||++|+.|++.+ .+..++++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~ 39 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY-----QLAHISAGDL 39 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH-----CCEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHH
Confidence 59999999999999999999998 3456666554
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.75 E-value=0.0071 Score=59.32 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
.+..++|+|++|+||||+++.|+..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34458899999999999999999998543
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.73 E-value=0.0065 Score=59.79 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.++|+|+||+|||++|+.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999988
No 320
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.73 E-value=0.021 Score=62.02 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh-------hcccc-------cchHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV-------AGAKY-------RGEFEERLKAVL 264 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~g~~~-------~g~~~~~l~~~~ 264 (900)
...-++|+||||+|||+++..++......+ .++++++...-. .|... ....+..+ .+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG-------GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 345589999999999999999997765443 236666654211 01000 01122222 223
Q ss_pred HHHHHcCCCeEEEEcchhhhhh
Q 046258 265 KEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 265 ~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
..+....++.+|+||++..+.+
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHhcCCCCEEEEcChHhhcc
Confidence 3233334466899999998873
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0047 Score=60.89 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+ .+..++++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~ 37 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGEL 37 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHH
Confidence 58899999999999999999988 3455666554
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.71 E-value=0.0056 Score=62.59 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+.+++|+|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999998
No 323
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.70 E-value=0.0048 Score=61.14 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+ .+..++++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~ 46 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTGEL 46 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHH
Confidence 58999999999999999999988 3556666554
No 324
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.70 E-value=0.023 Score=61.16 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh---------hh--cccc-----------cchH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL---------VA--GAKY-----------RGEF 256 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l---------~~--g~~~-----------~g~~ 256 (900)
.+.-++|+||||+|||+++..++........ ..-.+..+++++.... .. |... ....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4456899999999999999999987532200 0000345777766531 00 1000 0011
Q ss_pred H---HHHHHHHHHHHHcCCCeEEEEcchhhhhh
Q 046258 257 E---ERLKAVLKEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 257 ~---~~l~~~~~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
+ ..+..+...+....+..+|+||.+..+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 1 22333333444424467899999998875
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.70 E-value=0.0046 Score=60.97 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999987
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.70 E-value=0.0054 Score=60.57 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+. +..+|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~-----~~~i~~d~~ 43 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYG-----YTHLSTGDL 43 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHH
Confidence 689999999999999999999883 445555543
No 327
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.69 E-value=0.0042 Score=62.62 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=26.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+||||+|||++|+.|++.+ .+..++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHH
Confidence 48899999999999999999887 3455666544
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0048 Score=62.76 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=27.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+ .+..++++++
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~ 41 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSGDL 41 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEechHH
Confidence 69999999999999999999987 3455665444
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.68 E-value=0.011 Score=62.62 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+||||+||||+++.|+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347889999999999999999876
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.67 E-value=0.0046 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=21.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 331
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.66 E-value=0.0079 Score=61.93 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+..++|+|+||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999887
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.65 E-value=0.0059 Score=59.30 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.6
Q ss_pred EEEEeccCCchHHHHHHHHHHH-hcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQ-LFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~-l~~~~~~~i~i~~~~ 626 (900)
.++|+|+||+|||++|+.|++. + .+..++...
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~-----~~~~i~~d~ 36 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNP-----GFYNINRDD 36 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST-----TEEEECHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcC-----CcEEecHHH
Confidence 5899999999999999999983 3 456666543
No 333
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.65 E-value=0.0054 Score=60.76 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.64 E-value=0.006 Score=62.35 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=27.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.|+||+|||++|+.|++.+. +..++++++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d~l 50 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATGDM 50 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CceecHHHH
Confidence 699999999999999999999983 445555443
No 335
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.64 E-value=0.026 Score=62.32 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCC--CCcEEEEEech
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL--ADVRLIALDMG 244 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l--~~~~~~~~~~~ 244 (900)
...-++|+||||+|||+|+..++..... |... .+...++++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~---p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQI---PLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS---CGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhcc---CcccCCCCCcEEEEeCC
Confidence 4456899999999999999987754321 1100 14457777654
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.63 E-value=0.0082 Score=59.69 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=27.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.|+||+|+|||++++.|+..+ ..+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-----CCeEEccccc
Confidence 68899999999999999999888 3456665554
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.62 E-value=0.0048 Score=62.12 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=26.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.|+|+||||+|||++|+.|++.+ .+..++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-----EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEeeHHHH
Confidence 48899999999999999999988 3445655444
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.62 E-value=0.0048 Score=62.52 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999988
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.61 E-value=0.0052 Score=60.42 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999987
No 340
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.61 E-value=0.006 Score=58.92 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=26.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+. +..+|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~ 36 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG-----YEFVDTDIF 36 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHH
Confidence 489999999999999999999883 345555443
No 341
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.59 E-value=0.049 Score=54.71 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=45.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec--ccc-cccccccccccCCCCCCcccccccchhHHHHhCCCeEEEE
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID--MSE-YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLF 666 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~--~~~-~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vlll 666 (900)
-.+++||.|+|||+.+-..+......+.+.+.+. .+. +. ....+++ |....-.+......+.+.+ .+..+|++
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 4668999999999655444444333344444443 111 11 1111222 2211111111112233333 45789999
Q ss_pred ccccccCHHHHHHHHHHhhC
Q 046258 667 DEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 667 DEidk~~~~~~~~Ll~~ld~ 686 (900)
||+.-+.. ...+.+.+++
T Consensus 97 DEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH
T ss_pred Echhhhhh--HHHHHHHHHh
Confidence 99999974 5666677764
No 342
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.59 E-value=0.022 Score=64.07 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccc
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMS 625 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~ 625 (900)
.+...++|+||+|+|||++++.|+..+....+.+...++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 3445788999999999999999998876544444433343
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.58 E-value=0.0045 Score=62.39 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.58 E-value=0.0083 Score=58.68 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=22.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999987
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.56 E-value=0.0053 Score=61.85 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.56 E-value=0.0046 Score=66.20 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEec
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDM 243 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 243 (900)
+..++|+||+|||||+++..||+.+ +..++..|-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC----------CCcEEcccc
Confidence 3468899999999999999999987 556666553
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.56 E-value=0.0054 Score=62.42 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999987
No 348
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.54 E-value=0.066 Score=59.59 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
.-++++|++|+||||++..||..+... +.++..+++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D 137 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSD 137 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCC
Confidence 347888999999999999999988654 3445556543
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.54 E-value=0.0096 Score=59.63 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhc
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
...+.++||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999885
No 350
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.53 E-value=0.027 Score=61.10 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh-------cc-------cccchHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA-------GA-------KYRGEFEERLKAVL 264 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------g~-------~~~g~~~~~l~~~~ 264 (900)
...-++|+||||+|||+++..++..+... +.++++++...... |. ......+..+.. .
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~-~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI-V 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH-H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH-H
Confidence 34458899999999999999999887543 23366676543210 00 001122333322 2
Q ss_pred HHHHHcCCCeEEEEcchhhhhh
Q 046258 265 KEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 265 ~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
..+.....+.+++||.+..+.+
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHhhhcCCCeEEehHhhhhcC
Confidence 2222233456799999988764
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.53 E-value=0.006 Score=59.97 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+|+||+|||++|+.|++.+. +..+|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~ 40 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG-----WVHLSAGDL 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeEeeHHHH
Confidence 689999999999999999999883 455665443
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.53 E-value=0.0064 Score=63.36 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=28.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++|+|+||+|||++|+.|++.+...+.+++.++...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 5899999999999999999998643344555556543
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.52 E-value=0.0061 Score=61.54 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.52 E-value=0.025 Score=56.18 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHccCC---CCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 184 RDEEIRRVVRILSRRT---KNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 184 ~~~~i~~l~~~l~~~~---~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
+++.+..+.+.+.... +.-+.|+|++|+||||+++.|+..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4556677776665422 223788899999999999999988743
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.50 E-value=0.0069 Score=58.68 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|++|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999887
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0078 Score=57.81 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=22.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.++|+|++|+|||++|+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999883
No 357
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.50 E-value=0.011 Score=58.91 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=23.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..+..++|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999999887
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.49 E-value=0.0062 Score=59.42 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.++|+|+||+|||++|+.|++.+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999998843
No 359
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.0056 Score=60.52 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+..++|+||+|+||||+++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568999999999999999999875
No 360
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0077 Score=64.23 Aligned_cols=31 Identities=45% Similarity=0.714 Sum_probs=25.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
.++++||||||||++|+.||+.+.. .++.+|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~---~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPC---ELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCE---EEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC---cEEecc
Confidence 5899999999999999999999843 455554
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.47 E-value=0.011 Score=57.61 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=28.5
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
..+.|+|++|+|||++++.|+..+...+.+++.+|.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 368899999999999999999987433346666664
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.42 E-value=0.011 Score=61.64 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=29.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhh
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGAL 246 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l 246 (900)
..++|+|+||+||||+|+.|+..+... |..++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~-------g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKN-------NIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCEEEEECchHH
Confidence 468899999999999999999986543 333665665544
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.011 Score=58.98 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=28.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
.++|.||||+||+|.|+.|++.. + +..++.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----------g--~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----------G--FVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------C--CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----------C--CeEEcHHHHHH
Confidence 47889999999999999999987 3 45666677653
No 364
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.40 E-value=0.006 Score=60.02 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
+..++|+||||+||||+++.|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346889999999999999999875
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.37 E-value=0.013 Score=57.10 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEech
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMG 244 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~ 244 (900)
+..++|+|++|+||||+++.|+..+... |.+++.+|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEECCh
Confidence 3468899999999999999999987543 3347777643
No 366
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.37 E-value=0.0076 Score=64.48 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
.++|+||+|||||+||..||+.+.+ .+|..|-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~---eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL---EVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE---EEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC---cEEcccc
Confidence 6899999999999999999998843 4544443
No 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.37 E-value=0.05 Score=66.29 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred hcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHH
Q 046258 561 IGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAE 610 (900)
Q Consensus 561 ~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~ 610 (900)
+|.+..+..|.+.+... .+...+.++||.|+|||+||+.+++
T Consensus 131 VGRe~eLeeL~elL~~~--------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC--------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc--------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 56666777777777542 1123689999999999999999885
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.36 E-value=0.0068 Score=60.36 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999887
No 369
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.36 E-value=0.012 Score=62.13 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=26.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
.++++||||+|||+||..||+.+.. .++..|-
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~---~iis~Ds 43 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPV---ELISVDS 43 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCE---EEEECCT
T ss_pred EEEEECCCccCHHHHHHHHHHhCCC---cEEeccc
Confidence 5889999999999999999999843 4555443
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.01 Score=61.52 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|+|+||+||||+++.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 347899999999999999999987
No 371
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.35 E-value=0.0074 Score=61.21 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=28.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.|+||+|+||||+++.|++.+ .+..+|.+.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCcccCccee
Confidence 58999999999999999999887 35566766654
No 372
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.35 E-value=0.0082 Score=61.08 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=28.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.|.||+|+|||++|+.|++.+ .+..+|.+.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~~~ 44 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGAMY 44 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCcHH
Confidence 68999999999999999999998 35667776653
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.34 E-value=0.0075 Score=60.87 Aligned_cols=33 Identities=15% Similarity=0.412 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.|+||+|||++|+.|++.+ .+..++.+++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~l 39 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTGDM 39 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CceEEehhHH
Confidence 58999999999999999999998 3455555444
No 374
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.32 E-value=0.0083 Score=58.25 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQ 222 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~ 222 (900)
.++|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0099 Score=61.33 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+.+++|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999988
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.31 E-value=0.0072 Score=60.85 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.|+||+|||++|+.|++.+ .+..++++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-----GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHH
Confidence 48999999999999999999988 2445665444
No 377
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.28 E-value=0.043 Score=59.62 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
...-+.|+||||+|||+++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44458899999999999999999875
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.28 E-value=0.012 Score=58.76 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=23.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.++|.|+||+|||++|+.|++.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999998854
No 379
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.28 E-value=0.0066 Score=59.20 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.27 E-value=0.0073 Score=60.80 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.26 E-value=0.061 Score=60.08 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=51.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc--c---ccccCCCC--CC-cccccccchhHHHHh-C
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS--V---SRLIGAPP--GY-VGHEEGGQLTEAVRR-R 659 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~--~---~~l~G~~~--g~-~g~~~~~~l~~~~~~-~ 659 (900)
..++|+|++|+|||+++..||..+...+.+...+++..+..... . ....|-+. .. .+.+....+...+.. .
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 47999999999999999999988865455677777765421110 0 00111110 00 111221233344443 4
Q ss_pred CCeEEEEccccccCH
Q 046258 660 PYSVVLFDEVEKAHI 674 (900)
Q Consensus 660 ~~~vlllDEidk~~~ 674 (900)
.+.++++|.....+.
T Consensus 180 ~~D~vIIDT~G~~~~ 194 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE 194 (432)
T ss_dssp SCSEEEEECCCSCSS
T ss_pred CCCEEEEcCCCCccc
Confidence 678999999988764
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.25 E-value=0.016 Score=56.99 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=26.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALD 242 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 242 (900)
.++|+|++|+||||+++.|++.+...+.+ ++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~-------~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYF-------VSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC-------EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe-------EEEEe
Confidence 37899999999999999999987543333 66654
No 383
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.24 E-value=0.017 Score=63.19 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=51.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhhcccccchHHHHHHHHHHHHHHcCCCeEEEEcch
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEI 281 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 281 (900)
-++|.||+|+|||+++..||..+ +..++..|--.+..+-. .|. .....-+..+-+. -|||.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~----------~~~iis~Ds~QvYr~l~-i~T------~kp~~~E~~gv~h-hlid~~ 65 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF----------NGEVINSDSMQVYKDIP-IIT------NKHPLQEREGIPH-HVMNHV 65 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH----------TEEEEECCTTTTBSSCT-TTT------TCCCGGGTTTCCE-ESCSCB
T ss_pred EEEEECcchhhHHHHHHHHHHHC----------CCeEeecCccceecccc-ccc------CCCCHHHHcCchh-hcCCcc
Confidence 46788999999999999999998 44555443221211100 000 0000001122244 667766
Q ss_pred hhhhhCCCC--CChhhHHHhHhhhhhcCcEEEEEecCH
Q 046258 282 HLVLGAGRT--EGSMDAANLFKPMLARGQLRCIGATTL 317 (900)
Q Consensus 282 ~~l~~~~~~--~~~~~~~~~L~~~l~~g~irvI~att~ 317 (900)
+-- ...+ ....++...+..+..+|.+-+++-+|.
T Consensus 66 ~~~--~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTg 101 (409)
T 3eph_A 66 DWS--EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTH 101 (409)
T ss_dssp CTT--SCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred ChH--hHhhHHHHHHHHHHHHHHHHhcCCCEEEECChH
Confidence 521 1222 222345556666777787776665553
No 384
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.22 E-value=0.012 Score=63.32 Aligned_cols=40 Identities=30% Similarity=0.528 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHc----cCCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 185 DEEIRRVVRILS----RRTKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 185 ~~~i~~l~~~l~----~~~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.+++..+. .....+++|+|++|+||||+++.|+..+
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 333444444443 3344569999999999999999999987
No 385
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.22 E-value=0.043 Score=59.53 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~ 245 (900)
.+.-++|+||||+|||+++..++........ ..-.+..+++++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-GGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-TTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCeEEEEECCC
Confidence 3445789999999999999999986422100 000144577777643
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.21 E-value=0.012 Score=57.82 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=26.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
.+.|+|++|+|||++|+.|++.+...+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4889999999999999999998843233454443
No 387
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.21 E-value=0.049 Score=61.59 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
.+.-++|.|+||+|||+++..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445788899999999999999988754
No 388
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.19 E-value=0.011 Score=58.65 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHh
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIV 225 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~ 225 (900)
..+..+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455788999999999999999999885
No 389
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.17 E-value=0.0081 Score=58.31 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=42.1
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc----CCCCCCcccccccchhHHHHh--CCCeEE
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI----GAPPGYVGHEEGGQLTEAVRR--RPYSVV 664 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~----G~~~g~~g~~~~~~l~~~~~~--~~~~vl 664 (900)
+|++|++|+|||++|..++.. ..+.++++.+...+.....++. ..+++|.-.++...+.+.+.. .++.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~~~~~~~~~V 77 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAPDDAI 77 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSCTTSCTTCEE
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHHhhcccCCeE
Confidence 789999999999999999865 2367777776532222112211 112334433333334444432 234678
Q ss_pred EEccc
Q 046258 665 LFDEV 669 (900)
Q Consensus 665 llDEi 669 (900)
++|-+
T Consensus 78 LvDcl 82 (180)
T 1c9k_A 78 LLECI 82 (180)
T ss_dssp EEECH
T ss_pred EEcCH
Confidence 88755
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.15 E-value=0.089 Score=57.09 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCce
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLL 619 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 619 (900)
+...++|+||+|+||||+++.||..+......+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 445788999999999999999998875434443
No 391
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.10 E-value=0.012 Score=59.14 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=27.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhhh
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVA 248 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~ 248 (900)
-++|.||||+||+|.|+.|++.+ + +..++.++++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~----------g--~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF----------H--FNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH----------C--CEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----------C--CceEcHHHHHH
Confidence 46778999999999999999987 3 45666666653
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.07 E-value=0.0094 Score=60.45 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=26.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|.|+||+|||++|+.|++.+. +..++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-----~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-----LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CeEEchHHH
Confidence 489999999999999999999882 455665443
No 393
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.07 E-value=0.015 Score=57.67 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999988
No 394
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.06 E-value=0.023 Score=61.11 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=23.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
+++|+||+|+|||++++.||..+..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 6999999999999999999998854
No 395
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.05 E-value=0.036 Score=65.08 Aligned_cols=41 Identities=32% Similarity=0.351 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhc
Q 046258 563 LAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 563 ~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
|..++..+.+.+... ...+++++|+|+|||.+|-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHHHH
Confidence 445666666655321 12589999999999999887777664
No 396
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.04 E-value=0.013 Score=57.50 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHH-HHHHHHHHHHhcC
Q 046258 203 PVLIGEPGVGKT-AVVEGLAQRIVRG 227 (900)
Q Consensus 203 vlL~G~~GtGKT-~la~~la~~l~~~ 227 (900)
.+++||.|+||| .|.+.+.+...++
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~ 48 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ 48 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 577899999999 8999998877543
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.03 E-value=0.016 Score=62.24 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++++||||+|||++|+.||+.+. ...+++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 588999999999999999999983 345555554
No 398
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.03 E-value=0.012 Score=57.58 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEeccCCchHHHHHHHHHHHh
Q 046258 591 FLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l 612 (900)
|+|+||+|+|||+|++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999987665
No 399
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.02 E-value=0.013 Score=57.46 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
++++|+||+|+||||+++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999998765
No 400
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.01 E-value=0.04 Score=58.59 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
+...++|+||+|+|||+++..||..+...+..+..+++..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 34578999999999999999999988665556666666543
No 401
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.00 E-value=0.018 Score=58.23 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..+.|+||+|+||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887
No 402
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.00 E-value=0.013 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+||||+||||+++.|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999999876
No 403
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.97 E-value=0.047 Score=60.97 Aligned_cols=27 Identities=33% Similarity=0.542 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
...++|+|++|+|||+++..|+.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 446899999999999999999887643
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.96 E-value=0.015 Score=58.25 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=29.5
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc-CCCCceeEecccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF-DDENLLVRIDMSE 626 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~-~~~~~~i~i~~~~ 626 (900)
..++|+|++|+|||++++.|++.+. ..+.+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3688999999999999999999885 2233477777433
No 405
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.95 E-value=0.019 Score=57.31 Aligned_cols=45 Identities=31% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 580 GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 580 g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
|+-....+...+.++||+|+|||++|+.|+..+. .+..+++..+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~ 57 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFF 57 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGB
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccc
Confidence 4443344444688999999999999999997652 35566666543
No 406
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.94 E-value=0.011 Score=58.86 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999998 6
No 407
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.94 E-value=0.088 Score=59.84 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccccccc-----cccccCCC--CCCcccccccchhHHH---
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHS-----VSRLIGAP--PGYVGHEEGGQLTEAV--- 656 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~-----~~~l~G~~--~g~~g~~~~~~l~~~~--- 656 (900)
+...++|+|++|+|||+++..||..+...+.+...+++..+..... ...-.|-+ +.+.+.+....+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999999988876555666677644321100 00001111 0011111111112222
Q ss_pred HhCCCeEEEEccccccCH--HHHHHHHHHh
Q 046258 657 RRRPYSVVLFDEVEKAHI--SVFNTLLQVL 684 (900)
Q Consensus 657 ~~~~~~vlllDEidk~~~--~~~~~Ll~~l 684 (900)
....+.++|+|-....+. .+...+..+.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~ 209 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVA 209 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHH
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHH
Confidence 235678999998877653 4455554443
No 408
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.92 E-value=0.053 Score=55.28 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.8
Q ss_pred EEEEeccCCchHHHHHHHH
Q 046258 590 SFLFLGPTGVGKTELAKAL 608 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~l 608 (900)
.+++.||+|+|||++...+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 5999999999999765544
No 409
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.92 E-value=0.056 Score=59.96 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccccccccccccc--CCCCCCcccccccchhHHHHhC-C----
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLI--GAPPGYVGHEEGGQLTEAVRRR-P---- 660 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~~~~~~~~l~--G~~~g~~g~~~~~~l~~~~~~~-~---- 660 (900)
....++.|+||+|||++...++.. .+...+....-.......++. |.... . ...-..+..++... +
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~~~~~-~-~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAAEMIRRRANASGIIVA-T-KDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHHHHHHHHHTTTSCCCC-C-TTTEEEHHHHHHTTTSSCCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHHHHHHHHhhhcCcccc-c-cceEEEeHHhhcCCCCCCCC
Confidence 345789999999999998777532 123333322211111112221 11000 0 00112344444432 2
Q ss_pred -CeEEEEccccccCHHHHHHHHHHhhC
Q 046258 661 -YSVVLFDEVEKAHISVFNTLLQVLDD 686 (900)
Q Consensus 661 -~~vlllDEidk~~~~~~~~Ll~~ld~ 686 (900)
..+|++||+-++++..+..++..+..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 68999999999999999988887753
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.90 E-value=0.019 Score=58.20 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 411
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.86 E-value=0.012 Score=58.68 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=21.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.++|+||||+|||++++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999877
No 412
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.85 E-value=0.12 Score=55.12 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
...-++|.|+||+|||+++..+|......
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34457888999999999999999877543
No 413
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.85 E-value=0.074 Score=57.60 Aligned_cols=91 Identities=24% Similarity=0.380 Sum_probs=52.5
Q ss_pred HHHHHHcc-CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechh-------h--------hhccccc
Q 046258 190 RVVRILSR-RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGA-------L--------VAGAKYR 253 (900)
Q Consensus 190 ~l~~~l~~-~~~~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~-------l--------~~g~~~~ 253 (900)
++++.+.. ..+..++|+||+|+|||++++.|++.+.... + ++.++.+-++. + +..+. .
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~-~----~v~~I~~lIGER~~Ev~~~~~~~~~~vV~ata-d 236 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH-P----DCVLMVLLIDERPEEVTEMQRLVKGEVVASTF-D 236 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC-T----TSEEEEEEESSCHHHHHHHHTTCSSEEEEECT-T
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcC-C----CeeEEEEEecCChHHHHHHHHHhCeEEEEeCC-C
Confidence 34444443 4566899999999999999999999875432 2 44455543331 1 11111 1
Q ss_pred chHHHHHH------HHHHHHHHcCCCeEEEEcchhhhhh
Q 046258 254 GEFEERLK------AVLKEVEEAEGKVILFIDEIHLVLG 286 (900)
Q Consensus 254 g~~~~~l~------~~~~~~~~~~~~~iL~iDEi~~l~~ 286 (900)
.....++. .+-+.+...+..++||+|++..+..
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHH
Confidence 11112222 1122233456678999999987653
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.84 E-value=0.023 Score=55.90 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 046258 203 PVLIGEPGVGKTAVVEGLAQRIVRGDV 229 (900)
Q Consensus 203 vlL~G~~GtGKT~la~~la~~l~~~~~ 229 (900)
++|.|++|+||||+++.|++.+...+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 688999999999999999998855433
No 415
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.84 E-value=0.01 Score=61.14 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.++|+||+|+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999887
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.83 E-value=0.024 Score=56.86 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=30.7
Q ss_pred cCCCCCeEEEcCCCCcHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEechh
Q 046258 197 RRTKNNPVLIGEPGVGKTAVVEGLAQRIV-RGDVPSNLADVRLIALDMGA 245 (900)
Q Consensus 197 ~~~~~~vlL~G~~GtGKT~la~~la~~l~-~~~~p~~l~~~~~~~~~~~~ 245 (900)
...+..++|+|++|+||||+++.|+..+. .. |.+++.++...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~-------g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDR-------RVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-------CCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccc-------CCcEEEECChH
Confidence 34455788999999999999999999884 22 22366666433
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.82 E-value=0.021 Score=58.07 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999988
No 418
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.82 E-value=0.014 Score=57.81 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.+.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 488999999999999999999884
No 419
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.80 E-value=0.014 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.637 Sum_probs=21.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||+|++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 420
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.78 E-value=0.017 Score=60.99 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.++++||||||||+||..||+.+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 488999999999999999999883
No 421
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.77 E-value=0.015 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||++++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 422
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.77 E-value=0.35 Score=51.05 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=32.5
Q ss_pred CeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 588 TGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 588 ~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
...++++|++|+|||+++..||..+...+.....+++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3478899999999999999999988766667777777643
No 423
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.75 E-value=0.023 Score=62.26 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=25.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
.+++.||||+|||+||..||+.+.. .++..|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~---~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG---EVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE---EEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC---eEeecC
Confidence 5889999999999999999999843 444444
No 424
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.74 E-value=0.018 Score=56.71 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.8
Q ss_pred EEEeccCCchHHHHHHHHHHHhcCCCCcee
Q 046258 591 FLFLGPTGVGKTELAKALAEQLFDDENLLV 620 (900)
Q Consensus 591 ~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i 620 (900)
|.|.|++|+||||+++.|++.+...+.+++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 789999999999999999998843233444
No 425
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.73 E-value=0.034 Score=59.60 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.2
Q ss_pred CCCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 586 ~p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+...++|+||+|+|||+++..||..+...+..+..+++.-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 444579999999999999999999988766677777777543
No 426
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.73 E-value=0.022 Score=56.98 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.|+|+|++|+|||++|+.|++.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.72 E-value=0.016 Score=57.09 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+.|+|++|+||||+++.|+..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47889999999999999999986
No 428
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.72 E-value=0.15 Score=50.00 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDV 229 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~~ 229 (900)
.+.++++++++|.||||+|-++|.+....+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999998876543
No 429
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.70 E-value=0.016 Score=60.00 Aligned_cols=34 Identities=38% Similarity=0.470 Sum_probs=28.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.|.||+|+|||++++.|++.+ .+..+|.+.+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L-----g~~~~d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL-----NWRLLDSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCCcCCCCcee
Confidence 68899999999999999999988 45666766554
No 430
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.70 E-value=0.043 Score=58.52 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc--CCCCceeEeccccc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF--DDENLLVRIDMSEY 627 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~--~~~~~~i~i~~~~~ 627 (900)
..+.|+||+|+|||||++.|+..+. .....+..+++..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3688999999999999999999875 33445556666654
No 431
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.69 E-value=0.021 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.++|+|++|+|||++|+.|++.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 432
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.69 E-value=0.065 Score=56.88 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=26.3
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCce
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLL 619 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~ 619 (900)
+...++|+||+|+||||+++.||..+......+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 345788999999999999999998876544443
No 433
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.68 E-value=0.043 Score=57.91 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHHhcC
Q 046258 566 AVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 566 av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.+..|.+.+..+.. ..+.+| ..+.++||+|+|||++|+.|+..+..
T Consensus 12 ~~~~l~~~i~~~~~--~~~~~~-~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 12 TIEFLDKYIPEWFE--TGNKCP-LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHHHHT--TTCCSC-EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh--ccCCCC-eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34455555554321 122334 36889999999999999999998853
No 434
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.66 E-value=0.023 Score=58.66 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCC-----CCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDD-----ENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~-----~~~~i~i~~~~~~ 628 (900)
.|.+.|++|+|||++|+.|++.+... ....+.+++.+|.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 68899999999999999999987431 1134467776654
No 435
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.65 E-value=0.021 Score=57.07 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=28.8
Q ss_pred HHHHHHHHHccC--CCCCeEEEcCCCCcHHHHHHHHHHHHh
Q 046258 187 EIRRVVRILSRR--TKNNPVLIGEPGVGKTAVVEGLAQRIV 225 (900)
Q Consensus 187 ~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 225 (900)
.+.++.+.+... .+.-+.|+||+|+||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445555555433 233478899999999999999999884
No 436
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.64 E-value=0.018 Score=61.76 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.++|.||+|+|||++|..|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57889999999999999999988
No 437
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.64 E-value=0.024 Score=58.37 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.|+|++|+|||++++.||..+. +..+|...+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~ 82 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTL 82 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHH
Confidence 499999999999999999999883 445565443
No 438
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.61 E-value=0.047 Score=60.33 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=27.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC------CCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD------DENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~------~~~~~i~i~~~~ 626 (900)
.++|+||||+|||+|++.++-.... .....++++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5889999999999999977644322 234678887765
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.60 E-value=0.017 Score=57.08 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.++|++|+|||++|+.|++.+ .+..+|+..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHH
Confidence 57899999999999999999987 35667776663
No 440
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.58 E-value=0.018 Score=57.52 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=22.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..++|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988
No 441
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.58 E-value=0.019 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.-++|+||+|+||||+++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 442
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.56 E-value=0.056 Score=69.34 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=34.5
Q ss_pred HhcHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeccCCchHHHHHHHHHHH
Q 046258 560 LIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQ 611 (900)
Q Consensus 560 l~g~~~av~~l~~~i~~~~~g~~~~~~p~~~~ll~Gp~GtGKT~lA~~la~~ 611 (900)
++|.+..+..|.+.+... ......+.++|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 678888888888877532 122346889999999999999988765
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.55 E-value=0.018 Score=57.28 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=25.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.++|++|+|||++++.|+. + .+..+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccHH
Confidence 488999999999999999998 6 2455665554
No 444
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.54 E-value=0.17 Score=57.51 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHh-cC---CCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL-FD---DENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l-~~---~~~~~i~i~~~~ 626 (900)
|+|+.|+||+|||++.+.|...+ .. ..-.|+-+|...
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 79999999999999999887543 22 223577777654
No 445
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.54 E-value=0.023 Score=56.85 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
+..++|+|++|+||||+++.|++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4468999999999999999999987443
No 446
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.54 E-value=0.029 Score=56.08 Aligned_cols=25 Identities=44% Similarity=0.339 Sum_probs=22.6
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
..+.|+||+|+|||||++.|+..+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999874
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.53 E-value=0.016 Score=57.76 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=27.6
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.|.|++|+|||++|+.|++.+. +..+|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CceeccchHH
Confidence 589999999999999999999883 4556665543
No 448
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.53 E-value=0.079 Score=59.68 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
+.-++|.|+||+|||+++..+|.....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 334788899999999999999988764
No 449
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.52 E-value=0.033 Score=55.91 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=26.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHhcCC
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRIVRGD 228 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~ 228 (900)
+.+.++++.|+||||||+++-.+|..+...+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4566899999999999999999999886653
No 450
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.51 E-value=0.037 Score=58.81 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.3
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcCCCCcee
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLV 620 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i 620 (900)
..+.|+||+|+||||+++.|+..+......+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 47889999999999999999988865444433
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.50 E-value=0.019 Score=56.24 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=25.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.|+||+|+|||++++.|+..+. ..+.++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccC----CeEEEcccch
Confidence 478999999999999999987442 2255554433
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.47 E-value=0.026 Score=58.36 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=29.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhcCCCCCCCCCcEEEEEechhhh
Q 046258 201 NNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALV 247 (900)
Q Consensus 201 ~~vlL~G~~GtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~~~l~ 247 (900)
..|.|.|++|+||||+|+.|+..+....+. ..+..++.+++..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 357889999999999999999987211000 002235567776654
No 453
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.45 E-value=0.021 Score=58.84 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 454
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.43 E-value=0.02 Score=57.14 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
+..++|+|++|+||||+++.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999998743
No 455
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.35 E-value=0.023 Score=56.41 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=21.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||||++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 456
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.34 E-value=0.02 Score=56.84 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=21.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||++++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999999876
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.31 E-value=0.024 Score=56.10 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.|+|++|+|||++|+.|++. + +..+|+..+
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~--g----~~~id~d~~ 41 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW--G----YPVLDLDAL 41 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT--T----CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC--C----CEEEcccHH
Confidence 6899999999999999999986 2 445565544
No 458
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.30 E-value=0.023 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.8
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+|++|+|||++++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 459
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.30 E-value=0.025 Score=56.13 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|+||+|+||||+++.|....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999876
No 460
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.27 E-value=0.023 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+.-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4458889999999999999999875
No 461
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.24 E-value=0.02 Score=56.83 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..++|+|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999999876
No 462
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.17 E-value=0.056 Score=59.04 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=26.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
.++++||+|+|||||.++|+..+.. ....+.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 5999999999999999999987654 34455555
No 463
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.17 E-value=0.15 Score=59.68 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhc
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRIVR 226 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l~~ 226 (900)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999988877753
No 464
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.17 E-value=0.034 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|+||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4468899999999999999999987
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.15 E-value=0.052 Score=59.38 Aligned_cols=26 Identities=46% Similarity=0.528 Sum_probs=22.9
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
..++|+||||+|||++++.|+..+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 36899999999999999999987743
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.14 E-value=0.18 Score=54.95 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=29.4
Q ss_pred HHHHHHHHHcc--CCCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 187 EIRRVVRILSR--RTKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 187 ~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
..+.++..+.. .....+.|+|+||+||||++..|+..+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34455554442 233458899999999999999999887543
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.14 E-value=0.017 Score=57.48 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQ 222 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~ 222 (900)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.14 E-value=0.033 Score=55.37 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+.|.|++|+||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57889999999999999999988
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.12 E-value=0.018 Score=60.96 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.+.||+|+|||++|+.|++.+......+..+++..|.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 588999999999999999999875323346778887765
No 470
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.12 E-value=0.024 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHH
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~ 223 (900)
.++|+||+|+||||+++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4688999999999999999874
No 471
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.11 E-value=0.15 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
.+.-++|.|+||+|||++|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456899999999999999887754
No 472
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.10 E-value=0.039 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHh
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
+...+.|.||.|+|||+|.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33468899999999999999999988
No 473
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.10 E-value=0.046 Score=57.86 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcC-CCCceeEeccccccccc-----ccccccCCCCCCcccccccchhHHHH-hCCC
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFD-DENLLVRIDMSEYMEQH-----SVSRLIGAPPGYVGHEEGGQLTEAVR-RRPY 661 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~-~~~~~i~i~~~~~~~~~-----~~~~l~G~~~g~~g~~~~~~l~~~~~-~~~~ 661 (900)
..++|+||+|+|||+++..||..+.. .+..+..+++..+.... ......|-+ -+.... ...+..++. ...+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~-~~~~~~-~~~l~~al~~~~~~ 183 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAP-LEVCYT-KEEFQQAKELFSEY 183 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCC-CCBCSS-HHHHHHHHHHGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCC-eEecCC-HHHHHHHHHHhcCC
Confidence 47999999999999999999988863 45566667765542110 001122221 111111 122333332 2456
Q ss_pred eEEEEccccccCH--HHHHHHHHHhh
Q 046258 662 SVVLFDEVEKAHI--SVFNTLLQVLD 685 (900)
Q Consensus 662 ~vlllDEidk~~~--~~~~~Ll~~ld 685 (900)
.++++|-....+. .....|..++.
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHh
Confidence 8999996655443 34455666654
No 474
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.10 E-value=0.024 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||+|.+.|....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998876
No 475
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.08 E-value=0.052 Score=53.93 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=50.2
Q ss_pred EEEEeccCCchHHH-HHHHHHHHhcCCCCceeEeccc--c-cccccccccccCCCCCCcccccccchhHHHHhCCCeEEE
Q 046258 590 SFLFLGPTGVGKTE-LAKALAEQLFDDENLLVRIDMS--E-YMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVL 665 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~-lA~~la~~l~~~~~~~i~i~~~--~-~~~~~~~~~l~G~~~g~~g~~~~~~l~~~~~~~~~~vll 665 (900)
..+++||-|+|||+ |.+.+.+.... ..+...+... . +.+. .+..=.|....-.-......+.+.+ ..+..+|+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~-~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ 106 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKE-KVVSHNGNAIEAINISKASEIMTHD-LTNVDVIG 106 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC------------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhh-hHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEE
Confidence 46799999999998 66666555544 3344433221 1 1111 1111111110000011111122222 23567999
Q ss_pred EccccccCHHHHHHHHHHhhCC
Q 046258 666 FDEVEKAHISVFNTLLQVLDDG 687 (900)
Q Consensus 666 lDEidk~~~~~~~~Ll~~ld~g 687 (900)
+||+.-+++++.+.+..+.+.|
T Consensus 107 IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 107 IDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp ECCGGGSCTHHHHHHHHHHHTT
T ss_pred EechhcCCHHHHHHHHHHHHCC
Confidence 9999999999888888887653
No 476
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.08 E-value=0.12 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLA 221 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la 221 (900)
+.+++++||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4689999999999998766554
No 477
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.07 E-value=0.057 Score=61.05 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=28.0
Q ss_pred eEEEEeccCCchHHHHHHHHHHHhcC-CCCceeEecc
Q 046258 589 GSFLFLGPTGVGKTELAKALAEQLFD-DENLLVRIDM 624 (900)
Q Consensus 589 ~~~ll~Gp~GtGKT~lA~~la~~l~~-~~~~~i~i~~ 624 (900)
..+++.|+||+|||+++..++..+.. .+.++..+++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36899999999999999999987753 2446666654
No 478
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.04 E-value=0.042 Score=52.77 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=27.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
.+.|+|++|+|||+++..|+..+...+.++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 58899999999999999999988654444444443
No 479
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.03 E-value=0.031 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHh
Q 046258 590 SFLFLGPTGVGKTELAKALAEQL 612 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l 612 (900)
.+.|+||+|+|||+|++.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999775
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.99 E-value=0.026 Score=59.38 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.|.|+|++|+|||++|+.|++ + .+..+++..+
T Consensus 77 iI~I~G~~GSGKSTva~~La~-l-----g~~~id~D~~ 108 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN-L-----GAYIIDSDHL 108 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-H-----TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCcEEehhHH
Confidence 688999999999999999994 4 2455666554
No 481
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.98 E-value=0.29 Score=54.32 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCeEEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 587 p~~~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
+...++|+||+|+|||+++..||..+...+..+..+++.-+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 34578899999999999999999999776677777777544
No 482
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.98 E-value=0.029 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468899999999999999999865
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.97 E-value=0.025 Score=55.49 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=26.9
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.++|+||||+|||+||..|++..+ .++.-|.-.+
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs~~v 69 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH----RLIADDRVDV 69 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC----EEEESSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC----eEEecchhhe
Confidence 589999999999999999997753 5666665444
No 484
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.96 E-value=0.026 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.5
Q ss_pred EEEEeccCCchHHHHHHHHHHHhc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLF 613 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~ 613 (900)
.+.|+||+|+|||+|++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998763
No 485
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.93 E-value=0.03 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHh
Q 046258 202 NPVLIGEPGVGKTAVVEGLAQRIV 225 (900)
Q Consensus 202 ~vlL~G~~GtGKT~la~~la~~l~ 225 (900)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 486
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.92 E-value=0.026 Score=56.21 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEeccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY 627 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~ 627 (900)
.+.|+||+|+||||+++.|+. + .+..+|...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHH
Confidence 488999999999999999987 4 2344565543
No 487
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.91 E-value=0.11 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
...-++|+||||+|||++|..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999999763
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.90 E-value=0.031 Score=62.39 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.3
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSE 626 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 626 (900)
.++++|+||+|||++|+.|++.+ .+..++...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 68899999999999999999877 455666544
No 489
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.89 E-value=0.033 Score=56.91 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.2
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecccccc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYM 628 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~~~ 628 (900)
.+.|+|++|+|||++++.|++.+ .+..+|.+.+.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d~~~ 51 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMY 51 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCceecCCCee
Confidence 68899999999999999999988 34566766654
No 490
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.84 E-value=0.046 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQR 223 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~ 223 (900)
...+|+|+|++|+||||++..|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999998854
No 491
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.84 E-value=0.034 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+.-+.|+||+|+||||+++.|+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999875
No 492
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.83 E-value=0.06 Score=61.52 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.7
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEec
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRID 623 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 623 (900)
+++++||+|+||||+.++|...+.. ....+.++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~-~~giitie 294 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIE 294 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEc
Confidence 5999999999999999999987754 44555554
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.83 E-value=0.033 Score=55.96 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|+|++|+||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999987
No 494
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.77 E-value=0.067 Score=57.58 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
.+.+++|+||+|+||||++++|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999776
No 495
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.77 E-value=0.021 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcC
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFD 614 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~ 614 (900)
.+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998843
No 496
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.73 E-value=0.12 Score=58.68 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHhcC
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRG 227 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 227 (900)
.+..++|+|.||+||||+++.|++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34568999999999999999999988543
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.72 E-value=0.048 Score=63.47 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=29.1
Q ss_pred EEEEeccCCchHHHHHHHHHHHhcCCCCceeEecc
Q 046258 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDM 624 (900)
Q Consensus 590 ~~ll~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~ 624 (900)
.|+|+|+||+|||++|+.|++.+...+.+++.+|.
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 68999999999999999999998544446777763
No 498
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.71 E-value=0.057 Score=59.09 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 198 RTKNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 198 ~~~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
..+..++|+||||+||||+++.|+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455578999999999999999999876
No 499
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.62 E-value=0.18 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHH
Q 046258 199 TKNNPVLIGEPGVGKTAVVEGLAQ 222 (900)
Q Consensus 199 ~~~~vlL~G~~GtGKT~la~~la~ 222 (900)
..-+|+|+|.||+||||++..|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 345799999999999999998874
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.59 E-value=0.058 Score=55.03 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 046258 200 KNNPVLIGEPGVGKTAVVEGLAQRI 224 (900)
Q Consensus 200 ~~~vlL~G~~GtGKT~la~~la~~l 224 (900)
+..+.|+|++|+||||+++.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4468899999999999999999987
Done!