BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046259
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 2 PNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKFM 61
PNCY+R++++ D + IV+ A + G+ELTYDY F P E K+PC C A CRKF+
Sbjct: 134 PNCYSRVINI-DGQKHIVIFAMRKIYRGEELTYDYKF-PIEDASNKLPCNCGAKKCRKFL 191
Query: 62 N 62
N
Sbjct: 192 N 192
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1 MPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKF 60
PNC + SV D +R+ L A +++ AG ELT++Y + K C C APNC F
Sbjct: 174 QPNCETQKWSVNGD-TRVGLFALSDIKAGTELTFNYNLEC--LGNGKTVCKCGAPNCSGF 230
Query: 61 MN 62
+
Sbjct: 231 LG 232
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 PNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKFM 61
PNC + +V + + R+ V +G ELT+DY F E K C C + NCR ++
Sbjct: 200 PNCETQKWTV-NGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQK--CFCGSANCRGYL 256
Query: 62 N 62
Sbjct: 257 G 257
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 PNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCR 58
PNC + SV + RI L A ++ AG ELTYDY F E+ ++ C C CR
Sbjct: 156 PNCEMQKWSV-NGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQL-CKCGFEKCR 210
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 17 RIVLIAKTNVSAGDELTYDYLFDPD------------EPEEFKVPCLCKAPNCRKFMN 62
RI L + ++AG+ELT+DY + + C C A CR ++N
Sbjct: 243 RIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDY 36
NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 118 NCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 150
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDY 36
NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 113 NCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 145
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDY 36
NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 117 NCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDY 36
NC ++ + D ++LIA +++AG+EL YDY
Sbjct: 119 NCQTKLHDI-DGVPHLILIASRDIAAGEELLYDY 151
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEE 45
+C + ++ + + + ++ +I K + GDELT D+L+D P++
Sbjct: 116 SCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQ 158
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPEE 45
+C + ++ + + + ++ +I K + GDELT D+L+D P++
Sbjct: 100 SCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQ 142
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 5 YARIMSVGDDESR-IVLIAKTNVSAGDELTYDYL----------FDPDEPEEFKVPCLCK 53
+AR+ D + L A ++ G ELT+DY+ DP + E CLC
Sbjct: 235 FARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEM-TKCLCG 293
Query: 54 APNCRKFM 61
CR ++
Sbjct: 294 TAKCRGYL 301
>pdb|2KUD|A Chain A, Nmr Structure Of The Pasta Domain 1 And 2 Of
Mycobacterium Tuberculosis Of Pknb
Length = 140
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 22 AKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKF 60
A T+VSAGDE+T + P++ E V L A +K
Sbjct: 55 ANTSVSAGDEITVNVSTGPEQREIPDVSTLTYAEAVKKL 93
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDY 36
NC ++ + D ++LIA +++AG+EL +DY
Sbjct: 118 NCQTKLHDI-DGVPHLILIASRDIAAGEELLFDY 150
>pdb|2JBY|A Chain A, A Viral Protein Unexpectedly Mimics The Structure And
Function Of Pro-Survival Bcl-2
Length = 145
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 34 YDYLFDPDEPEEFKVPCLCKAPNCRKFMN 62
YDYL D D E ++ LC+ NC F+N
Sbjct: 23 YDYLNDVDITECTEMDLLCQLSNCCDFIN 51
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 3 NCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFD 39
+C + ++ + + + ++ +I K + GDELT D+L+D
Sbjct: 121 SCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYD 157
>pdb|2O42|A Chain A, Crystal Structure Of M11l, Bcl-2 Homolog From Myxoma
Virus
pdb|2O42|B Chain B, Crystal Structure Of M11l, Bcl-2 Homolog From Myxoma
Virus
Length = 144
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 34 YDYLFDPDEPEEFKVPCLCKAPNCRKFMN 62
YDYL D D E + LC+ NC F+N
Sbjct: 12 YDYLNDVDITECTEXDLLCQLSNCCDFIN 40
>pdb|2KUI|A Chain A, Nmr Structure Of The Pasta Domain Of Mycobacterium
Tuberculo Pknb
Length = 275
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 22 AKTNVSAGDELTYDYLFDPDEPEEFKVPCLCKAPNCRKF 60
A T+VSAGDE+T + P++ E V L A +K
Sbjct: 55 ANTSVSAGDEITVNVSTGPEQREIPDVSTLTYAEAVKKL 93
>pdb|2JBX|A Chain A, Crystal Structure Of The Myxoma Virus Anti-Apoptotic
Protein M11l
pdb|2JBX|B Chain B, Crystal Structure Of The Myxoma Virus Anti-Apoptotic
Protein M11l
Length = 145
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 34 YDYLFDPDEPEEFKVPCLCKAPNCRKFMN 62
YDYL D D E + LC+ NC F+N
Sbjct: 23 YDYLNDVDITECTEXDLLCQLSNCCDFIN 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,950,579
Number of Sequences: 62578
Number of extensions: 60044
Number of successful extensions: 172
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 19
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)