BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046260
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 77 VLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE-----------QSSALPRYLL 120
V FYA+WC S+ + P E S +PQ + Y ++ + SA+P LL
Sbjct: 29 VDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLL 83
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME 105
R V F+ASWCP+ RD P+ + L FP+ +
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGD 74
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 66 LTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE---QSSALPRYLLT 121
L ++ + V F+A WC R++ P EAL+ P++E ++ A +Y +T
Sbjct: 13 LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVT 71
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 55 FEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE---- 110
F+ EF D A+ ++ V FYA+WC + + P E S +PQ + Y ++
Sbjct: 5 FKTASEF-DSAIA---QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDEL 60
Query: 111 -------QSSALPRYLL 120
+ SA+P LL
Sbjct: 61 GDVAQKNEVSAMPTLLL 77
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 55 FEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE---- 110
F+ EF D A+ ++ V FYA+WC + + P E S +PQ + Y ++
Sbjct: 11 FKTASEF-DSAIA---QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDEL 66
Query: 111 -------QSSALPRYLL 120
+ SA+P LL
Sbjct: 67 GDVAQKNEVSAMPTLLL 83
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALS----SMFPQMEHYTIEQS- 112
DG+ +L + +N V F+A+WC + + P F+ LS ++F +++ +E++
Sbjct: 21 DGDL--ESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETA 78
Query: 113 -----SALPRYL 119
SA+P ++
Sbjct: 79 RKYNISAMPTFI 90
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALS----SMFPQMEHYTIEQS- 112
DG+ +L + +N V F+A+WC + + P F+ LS ++F +++ +E++
Sbjct: 12 DGDL--ESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETA 69
Query: 113 -----SALPRYL 119
SA+P ++
Sbjct: 70 RKYNISAMPTFI 81
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 57 VDGEFLDRALTSKQRNAYTSVL-FYASWCPFSRDVRPTFEALSSMFPQ 103
+D E +D L NA +++ FYA WC FS+ + P FE S + +
Sbjct: 10 LDTENIDEILN----NADVALVNFYADWCRFSQXLHPIFEEASDVIKE 53
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 41 LQSQCPPGISPNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSM 100
L+S+ P + P V E D + ++ ++ + FYA WC +++ P ++ L
Sbjct: 341 LKSEPIPESNDGPVKVVVAENFDEIVNNENKDVL--IEFYAPWCGHCKNLEPKYKELGEK 398
Query: 101 FPQMEHYTIEQSSALPRYLLTYFQYNGF 128
+ + I + A + + ++ GF
Sbjct: 399 LSKDPNIVIAKMDATANDVPSPYEVRGF 426
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 73 AYTSVLFYASWCPFSRDVRPTFEALSSM-FPQMEHYTI-EQSSALPRYLLTYFQYNGF 128
T + FYA WC + + PT+E LS FP + I E R + + + G+
Sbjct: 22 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 79
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 75 TSVLFYASWCPFSRDVRPTFEALSSM-FPQMEHYTI-EQSSALPRYLLTYFQYNGF 128
T + FYA WC + + PT+E LS FP + I E R + + + G+
Sbjct: 19 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 74
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 73 AYTSVLFYASWCPFSRDVRPTFEALSSM-FPQMEHYTI-EQSSALPRYLLTYFQYNGF 128
T + FYA WC + + PT+E LS FP + I E R + + + G+
Sbjct: 24 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 81
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 77 VLFYASWCPFSRDVRPTFEALSSMFPQM 104
V F ASWCP + + P F L+ FP +
Sbjct: 31 VDFTASWCPPCKMIAPIFAELAKKFPNV 58
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 77 VLFYASWCPFSRDVRPTFEALSSMFPQME 105
++F SWC + ++PTFE ++S QME
Sbjct: 22 IMFTGSWCQPCKKMKPTFEEMAS---QME 47
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 41 LQSQCPPGISPNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSM 100
L+S+ P + P V E D + ++ ++ + FYA WC +++ P ++ L
Sbjct: 16 LKSEPIPESNDGPVKVVVAENFDEIVNNENKDVL--IEFYAPWCGHCKNLEPKYKELGEK 73
Query: 101 FPQMEHYTIEQSSALPRYLLTYFQYNGF 128
+ + I + A + + ++ GF
Sbjct: 74 LSKDPNIVIAKMDATANDVPSPYEVRGF 101
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 55 FEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF 101
F++ G+ D + +++ VL+YA WC + + PT++ L+ +
Sbjct: 361 FQLVGKNHDEIVNDPKKDVL--VLYYAPWCGHCKRLAPTYQELADTY 405
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 77 VLFYASWCPFSRDVRPTFEALSSMFPQME 105
+ FYA WC + + P +E L +++ + E
Sbjct: 30 IEFYAPWCGHCKALAPKYEELGALYAKSE 58
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 77 VLFYASWCPFSRDVRPTFEALSSMFPQME 105
+ FYA WCP ++++P +E+ + +E
Sbjct: 27 IEFYAPWCPACQNLQPEWESFAEWGEDLE 55
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 62 LDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102
++ A T+K+ + F ASWC SR + P F L+ FP
Sbjct: 30 IEEANTAKK---LVVIDFTASWCGPSRIMAPVFADLAKKFP 67
>pdb|1EMR|A Chain A, Crystal Structure Of Human Leukemia Inhibitory Factor
(Lif)
Length = 159
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 37 FLNNLQSQCPPGISPNPPFEVDG 59
F NNL+ C P ++ PPF +G
Sbjct: 31 FPNNLEKLCGPNVTDFPPFHANG 53
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 147 DPVEYFAEDESISLERTDHPWFVSSTREIIQREPYLVFAVLFLCLRVLVYIFPEVLSRLK 206
D +E F DE S+E + W V+ RE RE V+ L +L Y + EV S +
Sbjct: 165 DILEEFGSDEKASMEMEEPFWIVNIPREFYDREENGVWKNYDL---ILPYGYGEVSSGGE 221
Query: 207 AFW 209
W
Sbjct: 222 REW 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,974,469
Number of Sequences: 62578
Number of extensions: 248253
Number of successful extensions: 718
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 23
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)