Query 046260
Match_columns 281
No_of_seqs 149 out of 210
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 10:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2640 Thioredoxin [Function 100.0 1.6E-44 3.5E-49 338.4 8.4 248 27-279 26-313 (319)
2 KOG0912 Thiol-disulfide isomer 99.7 5.4E-17 1.2E-21 154.0 4.0 86 57-148 1-109 (375)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.6 1.8E-15 3.9E-20 123.3 8.0 86 52-140 9-112 (113)
4 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 5.9E-15 1.3E-19 114.0 6.4 82 53-140 2-100 (101)
5 KOG0190 Protein disulfide isom 99.5 6.2E-15 1.3E-19 146.7 6.2 90 52-146 366-474 (493)
6 cd02999 PDI_a_ERp44_like PDIa 99.5 2.1E-14 4.6E-19 113.1 6.1 68 70-140 16-99 (100)
7 cd02996 PDI_a_ERp44 PDIa famil 99.5 5.2E-14 1.1E-18 110.1 7.2 83 52-140 1-107 (108)
8 cd03002 PDI_a_MPD1_like PDI fa 99.5 6.3E-14 1.4E-18 108.3 7.1 83 53-140 1-107 (109)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 7.4E-14 1.6E-18 107.8 7.0 82 53-139 2-102 (104)
10 KOG0190 Protein disulfide isom 99.5 4.5E-14 9.7E-19 140.6 6.0 91 51-147 24-135 (493)
11 cd02994 PDI_a_TMX PDIa family, 99.5 1.2E-13 2.5E-18 106.2 6.9 80 53-140 2-98 (101)
12 PF00085 Thioredoxin: Thioredo 99.5 2.5E-13 5.5E-18 102.3 8.1 81 54-140 1-99 (103)
13 PRK10996 thioredoxin 2; Provis 99.5 3.5E-13 7.7E-18 112.0 9.5 100 33-139 13-133 (139)
14 cd03001 PDI_a_P5 PDIa family, 99.4 5.7E-13 1.2E-17 101.5 7.1 82 54-140 2-101 (103)
15 cd03005 PDI_a_ERp46 PDIa famil 99.4 7.3E-13 1.6E-17 100.7 6.2 78 54-139 2-100 (102)
16 cd02993 PDI_a_APS_reductase PD 99.4 9E-13 2E-17 104.1 6.9 84 53-140 2-108 (109)
17 PTZ00443 Thioredoxin domain-co 99.3 4.1E-12 8.9E-17 115.2 9.8 86 52-140 30-134 (224)
18 cd02995 PDI_a_PDI_a'_C PDIa fa 99.3 2.5E-12 5.4E-17 97.6 7.0 82 53-139 1-102 (104)
19 PTZ00102 disulphide isomerase; 99.3 1.4E-11 3.1E-16 117.6 10.1 88 52-146 32-140 (477)
20 TIGR00424 APS_reduc 5'-adenyly 99.3 7.7E-12 1.7E-16 124.0 7.7 89 52-143 351-461 (463)
21 cd02992 PDI_a_QSOX PDIa family 99.3 5.6E-12 1.2E-16 101.5 5.4 49 52-102 1-49 (114)
22 KOG4277 Uncharacterized conser 99.3 5.3E-12 1.1E-16 120.8 5.6 83 53-143 29-130 (468)
23 cd02997 PDI_a_PDIR PDIa family 99.2 1.7E-11 3.7E-16 93.2 6.9 47 54-103 2-48 (104)
24 PLN02309 5'-adenylylsulfate re 99.2 1.4E-11 3E-16 122.0 7.3 87 53-142 346-454 (457)
25 cd02998 PDI_a_ERp38 PDIa famil 99.2 2.4E-11 5.2E-16 92.1 6.5 80 54-139 2-103 (105)
26 PRK09381 trxA thioredoxin; Pro 99.2 5.6E-11 1.2E-15 92.7 8.5 84 51-139 2-102 (109)
27 TIGR01126 pdi_dom protein disu 99.2 3.1E-11 6.7E-16 91.0 6.1 77 57-139 1-96 (102)
28 cd03000 PDI_a_TMX3 PDIa family 99.2 4.3E-11 9.2E-16 93.3 6.7 76 60-142 7-101 (104)
29 cd02963 TRX_DnaJ TRX domain, D 99.2 3.4E-11 7.4E-16 96.0 6.2 82 56-141 8-108 (111)
30 cd03007 PDI_a_ERp29_N PDIa fam 99.2 2.8E-11 6E-16 100.3 5.1 81 53-143 2-115 (116)
31 PTZ00102 disulphide isomerase; 99.2 7.8E-11 1.7E-15 112.5 8.7 88 52-144 357-464 (477)
32 cd02957 Phd_like Phosducin (Ph 99.2 2.1E-11 4.6E-16 97.1 3.8 69 52-122 4-72 (113)
33 TIGR01130 ER_PDI_fam protein d 99.2 5.4E-11 1.2E-15 111.8 7.2 86 53-145 2-110 (462)
34 cd02956 ybbN ybbN protein fami 99.2 5.4E-11 1.2E-15 90.4 5.6 75 61-139 2-93 (96)
35 cd02989 Phd_like_TxnDC9 Phosdu 99.1 1.4E-11 3.1E-16 99.3 1.3 65 54-122 6-71 (113)
36 cd02961 PDI_a_family Protein D 99.1 2.2E-10 4.8E-15 84.5 5.7 77 56-139 2-99 (101)
37 cd02954 DIM1 Dim1 family; Dim1 99.1 1.7E-10 3.6E-15 95.4 5.3 63 59-122 2-64 (114)
38 cd02985 TRX_CDSP32 TRX family, 99.1 3.9E-10 8.5E-15 88.6 7.1 52 58-110 2-53 (103)
39 PHA02278 thioredoxin-like prot 99.0 6.5E-10 1.4E-14 89.3 6.7 39 60-101 5-43 (103)
40 cd02948 TRX_NDPK TRX domain, T 99.0 4.8E-10 1E-14 87.8 5.7 63 56-122 4-67 (102)
41 cd02962 TMX2 TMX2 family; comp 99.0 5.4E-10 1.2E-14 95.9 6.4 69 52-122 28-98 (152)
42 cd03065 PDI_b_Calsequestrin_N 99.0 9.5E-10 2.1E-14 91.2 7.6 85 52-141 9-115 (120)
43 cd02987 Phd_like_Phd Phosducin 99.0 2E-10 4.4E-15 99.9 3.5 76 51-128 61-145 (175)
44 KOG0907 Thioredoxin [Posttrans 99.0 6.2E-10 1.4E-14 90.5 5.9 51 71-122 20-70 (106)
45 KOG0908 Thioredoxin-like prote 99.0 5.6E-10 1.2E-14 104.2 6.0 89 53-143 2-108 (288)
46 PTZ00051 thioredoxin; Provisio 99.0 6.8E-10 1.5E-14 84.4 5.2 66 53-122 1-67 (98)
47 TIGR01068 thioredoxin thioredo 98.9 2.8E-09 6E-14 79.8 7.0 77 57-139 1-95 (101)
48 TIGR01130 ER_PDI_fam protein d 98.9 2.5E-09 5.5E-14 100.5 8.1 93 52-149 346-458 (462)
49 PLN00410 U5 snRNP protein, DIM 98.9 1.2E-09 2.6E-14 93.4 5.1 64 58-122 10-73 (142)
50 cd02950 TxlA TRX-like protein 98.9 5.1E-09 1.1E-13 87.7 8.5 85 60-150 11-116 (142)
51 KOG0910 Thioredoxin-like prote 98.9 2.9E-09 6.2E-14 92.3 7.1 67 54-122 45-111 (150)
52 cd02965 HyaE HyaE family; HyaE 98.9 2.2E-09 4.7E-14 88.6 5.6 67 53-122 11-79 (111)
53 cd02984 TRX_PICOT TRX domain, 98.9 2.1E-09 4.5E-14 81.4 4.6 62 59-122 2-64 (97)
54 cd02988 Phd_like_VIAF Phosduci 98.8 1.5E-09 3.3E-14 96.0 2.7 61 52-112 82-142 (192)
55 KOG0913 Thiol-disulfide isomer 98.8 1.6E-09 3.5E-14 99.9 2.1 91 53-151 25-135 (248)
56 cd02953 DsbDgamma DsbD gamma f 98.8 5.9E-09 1.3E-13 80.9 4.2 48 60-110 2-53 (104)
57 cd02975 PfPDO_like_N Pyrococcu 98.8 8.1E-09 1.8E-13 83.2 4.9 51 71-122 21-71 (113)
58 COG3118 Thioredoxin domain-con 98.7 1.9E-08 4.2E-13 95.4 6.4 88 54-144 25-129 (304)
59 cd02986 DLP Dim1 family, Dim1- 98.7 1.6E-08 3.4E-13 84.1 4.6 62 60-122 3-64 (114)
60 cd02949 TRX_NTR TRX domain, no 98.7 3.5E-08 7.6E-13 76.1 6.2 73 61-139 4-94 (97)
61 KOG0191 Thioredoxin/protein di 98.7 3.4E-08 7.3E-13 94.2 6.0 88 53-146 145-254 (383)
62 KOG0191 Thioredoxin/protein di 98.6 3.5E-08 7.6E-13 94.1 5.9 80 58-143 36-132 (383)
63 cd02947 TRX_family TRX family; 98.6 9.5E-08 2.1E-12 68.7 5.9 57 61-121 2-58 (93)
64 KOG1731 FAD-dependent sulfhydr 98.6 2.1E-08 4.5E-13 101.8 1.8 49 50-100 37-85 (606)
65 cd02959 ERp19 Endoplasmic reti 98.5 8.4E-08 1.8E-12 78.1 4.1 40 62-101 8-48 (117)
66 TIGR01295 PedC_BrcD bacterioci 98.5 1.6E-07 3.5E-12 77.2 5.2 45 54-101 8-52 (122)
67 TIGR00411 redox_disulf_1 small 98.5 2.2E-07 4.8E-12 68.3 5.2 61 75-139 2-76 (82)
68 cd02952 TRP14_like Human TRX-r 98.5 2.2E-07 4.8E-12 77.1 5.4 53 58-111 8-68 (119)
69 TIGR02187 GlrX_arch Glutaredox 98.5 3.4E-07 7.5E-12 80.9 6.6 73 71-147 18-114 (215)
70 PHA02125 thioredoxin-like prot 98.3 5.2E-07 1.1E-11 67.5 2.9 24 76-99 2-25 (75)
71 cd02973 TRX_GRX_like Thioredox 98.3 6E-07 1.3E-11 64.6 2.9 47 75-122 2-48 (67)
72 TIGR02187 GlrX_arch Glutaredox 98.2 1.9E-06 4.1E-11 76.2 6.3 65 72-140 133-211 (215)
73 cd02951 SoxW SoxW family; SoxW 98.2 2.1E-06 4.6E-11 68.7 5.6 38 61-101 5-46 (125)
74 PRK00293 dipZ thiol:disulfide 98.1 3E-06 6.6E-11 85.9 5.9 58 53-110 453-515 (571)
75 TIGR02738 TrbB type-F conjugat 98.1 2.3E-06 5E-11 73.5 3.2 38 72-110 50-87 (153)
76 cd02967 mauD Methylamine utili 98.1 2.4E-06 5.2E-11 66.4 2.6 32 72-103 21-52 (114)
77 PTZ00062 glutaredoxin; Provisi 98.1 1E-05 2.2E-10 72.9 6.9 82 58-145 5-95 (204)
78 TIGR02740 TraF-like TraF-like 98.0 1E-05 2.3E-10 75.1 6.8 38 71-109 165-202 (271)
79 TIGR00412 redox_disulf_2 small 98.0 2.6E-06 5.7E-11 64.2 1.5 27 77-103 3-29 (76)
80 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 1.6E-05 3.5E-10 62.2 4.6 50 72-122 12-61 (89)
81 cd03010 TlpA_like_DsbE TlpA-li 97.9 1E-05 2.2E-10 64.5 3.5 39 71-110 24-62 (127)
82 cd02966 TlpA_like_family TlpA- 97.9 1.2E-05 2.6E-10 59.8 3.4 39 72-110 19-59 (116)
83 COG0526 TrxA Thiol-disulfide i 97.9 1.6E-05 3.4E-10 57.4 3.8 40 72-111 32-72 (127)
84 PRK15412 thiol:disulfide inter 97.9 3.9E-05 8.3E-10 66.4 6.9 38 71-110 67-104 (185)
85 cd03009 TryX_like_TryX_NRX Try 97.9 1.2E-05 2.6E-10 64.5 3.4 32 71-102 17-48 (131)
86 PRK03147 thiol-disulfide oxido 97.8 2.9E-05 6.3E-10 64.5 5.6 39 72-110 61-101 (173)
87 PF13905 Thioredoxin_8: Thiore 97.8 9E-06 1.9E-10 61.6 2.3 31 72-102 1-31 (95)
88 cd02964 TryX_like_family Trypa 97.8 1.3E-05 2.8E-10 65.0 3.4 33 71-103 16-48 (132)
89 cd02982 PDI_b'_family Protein 97.8 1.4E-05 3E-10 61.1 2.2 39 72-110 12-51 (103)
90 cd02955 SSP411 TRX domain, SSP 97.8 2.3E-05 5.1E-10 65.2 3.6 35 58-95 4-39 (124)
91 cd03012 TlpA_like_DipZ_like Tl 97.7 7.1E-05 1.5E-09 60.1 6.1 62 72-147 23-86 (126)
92 cd03011 TlpA_like_ScsD_MtbDsbE 97.7 1.9E-05 4.2E-10 62.1 2.8 44 55-101 6-49 (123)
93 TIGR00385 dsbE periplasmic pro 97.7 3.1E-05 6.8E-10 66.1 3.7 38 71-110 62-99 (173)
94 KOG0914 Thioredoxin-like prote 97.7 0.00017 3.7E-09 67.0 8.6 71 51-122 123-195 (265)
95 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00012 2.7E-09 53.9 4.5 23 76-98 1-23 (84)
96 cd03008 TryX_like_RdCVF Trypar 97.5 4.7E-05 1E-09 65.3 2.2 32 71-102 24-55 (146)
97 PRK13728 conjugal transfer pro 97.5 6.4E-05 1.4E-09 67.0 2.9 36 74-110 71-106 (181)
98 PF13899 Thioredoxin_7: Thiore 97.5 7.7E-05 1.7E-09 56.3 2.8 25 70-94 15-39 (82)
99 PRK14018 trifunctional thiored 97.4 9E-05 2E-09 75.2 3.3 32 71-102 55-86 (521)
100 TIGR02661 MauD methylamine deh 97.3 0.00019 4.1E-09 62.5 3.8 39 71-110 73-111 (189)
101 PF13098 Thioredoxin_2: Thiore 97.3 0.00015 3.2E-09 56.3 2.5 29 70-98 3-31 (112)
102 cd00340 GSH_Peroxidase Glutath 97.3 0.00021 4.5E-09 59.6 3.2 33 71-104 21-53 (152)
103 PLN02919 haloacid dehalogenase 97.2 0.00023 5E-09 77.2 3.7 34 71-104 419-452 (1057)
104 PF08534 Redoxin: Redoxin; In 97.2 0.00023 5E-09 57.8 2.5 40 71-110 27-69 (146)
105 TIGR02200 GlrX_actino Glutared 97.1 0.00024 5.3E-09 51.3 1.4 26 76-101 2-27 (77)
106 PTZ00056 glutathione peroxidas 97.0 0.00045 9.7E-09 61.2 3.0 34 71-104 38-71 (199)
107 cd02960 AGR Anterior Gradient 97.0 0.00053 1.1E-08 58.2 3.3 34 61-94 11-45 (130)
108 PLN02412 probable glutathione 97.0 0.00044 9.5E-09 59.2 2.8 34 71-104 28-61 (167)
109 cd03014 PRX_Atyp2cys Peroxired 97.0 0.00059 1.3E-08 55.4 3.2 39 72-110 26-65 (143)
110 cd01659 TRX_superfamily Thiore 96.9 0.00076 1.6E-08 43.5 2.8 35 76-110 1-35 (69)
111 TIGR02540 gpx7 putative glutat 96.9 0.00062 1.3E-08 56.7 2.6 40 71-110 21-62 (153)
112 PF00578 AhpC-TSA: AhpC/TSA fa 96.9 0.00058 1.3E-08 53.3 2.3 39 72-110 25-66 (124)
113 cd02969 PRX_like1 Peroxiredoxi 96.9 0.0007 1.5E-08 57.1 2.8 39 71-109 24-64 (171)
114 PLN02399 phospholipid hydroper 96.8 0.00093 2E-08 61.5 3.0 40 71-110 98-139 (236)
115 TIGR02196 GlrX_YruB Glutaredox 96.8 0.00061 1.3E-08 48.0 1.4 22 76-97 2-23 (74)
116 PRK00522 tpx lipid hydroperoxi 96.8 0.0012 2.6E-08 56.4 3.2 39 72-110 44-83 (167)
117 cd02968 SCO SCO (an acronym fo 96.7 0.00093 2E-08 53.7 2.4 32 72-103 22-54 (142)
118 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0038 8.2E-08 45.9 4.7 27 76-102 2-28 (82)
119 cd02970 PRX_like2 Peroxiredoxi 96.5 0.0016 3.5E-08 52.2 2.4 39 72-110 23-64 (149)
120 TIGR01626 ytfJ_HI0045 conserve 96.4 0.0023 5.1E-08 57.1 3.1 33 71-103 58-91 (184)
121 COG4232 Thiol:disulfide interc 96.4 0.0015 3.3E-08 67.1 2.1 37 56-93 458-495 (569)
122 KOG3425 Uncharacterized conser 96.2 0.0084 1.8E-07 51.2 5.2 52 60-111 13-72 (128)
123 cd03018 PRX_AhpE_like Peroxire 96.2 0.0034 7.4E-08 50.9 2.4 38 73-110 29-69 (149)
124 cd03023 DsbA_Com1_like DsbA fa 96.1 0.0056 1.2E-07 49.0 3.4 35 70-104 3-37 (154)
125 PRK15317 alkyl hydroperoxide r 96.0 0.018 3.8E-07 57.3 6.8 86 54-145 100-199 (517)
126 TIGR03137 AhpC peroxiredoxin. 95.7 0.0074 1.6E-07 52.5 2.8 38 72-109 31-71 (187)
127 PTZ00256 glutathione peroxidas 95.7 0.007 1.5E-07 52.4 2.6 39 72-110 40-81 (183)
128 PHA03050 glutaredoxin; Provisi 95.7 0.0072 1.6E-07 49.2 2.4 73 60-156 4-77 (108)
129 cd03015 PRX_Typ2cys Peroxiredo 95.7 0.0057 1.2E-07 52.0 1.8 32 72-103 29-61 (173)
130 cd03017 PRX_BCP Peroxiredoxin 95.7 0.0071 1.5E-07 48.4 2.2 32 72-103 23-55 (140)
131 PRK11200 grxA glutaredoxin 1; 95.7 0.0098 2.1E-07 45.1 2.9 31 76-106 3-33 (85)
132 PRK10606 btuE putative glutath 95.5 0.0096 2.1E-07 52.7 2.8 33 71-104 24-56 (183)
133 KOG2501 Thioredoxin, nucleored 95.4 0.027 5.8E-07 49.7 5.1 39 62-104 27-69 (157)
134 cd02971 PRX_family Peroxiredox 95.3 0.013 2.8E-07 46.8 2.7 39 72-110 22-63 (140)
135 PF14595 Thioredoxin_9: Thiore 95.3 0.0094 2E-07 50.0 1.8 68 57-128 28-95 (129)
136 cd02066 GRX_family Glutaredoxi 95.3 0.0093 2E-07 41.5 1.5 23 76-98 2-24 (72)
137 cd02976 NrdH NrdH-redoxin (Nrd 95.2 0.01 2.2E-07 41.7 1.4 23 76-98 2-24 (73)
138 PF02114 Phosducin: Phosducin; 95.1 0.077 1.7E-06 49.8 7.3 100 52-155 125-248 (265)
139 PF13728 TraF: F plasmid trans 95.0 0.023 5.1E-07 51.3 3.6 52 57-110 106-157 (215)
140 cd02958 UAS UAS family; UAS is 94.8 0.017 3.7E-07 45.8 2.0 32 61-92 5-37 (114)
141 PRK09437 bcp thioredoxin-depen 94.5 0.059 1.3E-06 44.5 4.5 38 72-109 30-70 (154)
142 TIGR02183 GRXA Glutaredoxin, G 93.9 0.051 1.1E-06 41.8 2.7 30 76-105 2-31 (86)
143 PRK10382 alkyl hydroperoxide r 93.4 0.064 1.4E-06 47.5 2.8 33 72-104 31-64 (187)
144 PF06110 DUF953: Eukaryotic pr 93.3 0.15 3.2E-06 42.8 4.8 49 60-108 6-62 (119)
145 TIGR03143 AhpF_homolog putativ 93.0 0.21 4.5E-06 50.5 6.2 80 54-139 460-552 (555)
146 TIGR02189 GlrX-like_plant Glut 92.9 0.16 3.4E-06 40.5 4.1 59 76-156 10-69 (99)
147 PRK15000 peroxidase; Provision 92.4 0.084 1.8E-06 46.9 2.2 34 71-104 33-67 (200)
148 smart00594 UAS UAS domain. 92.4 0.11 2.5E-06 42.1 2.8 31 61-91 15-46 (122)
149 TIGR03140 AhpF alkyl hydropero 91.9 0.42 9.1E-06 47.7 6.7 85 53-143 100-198 (515)
150 PTZ00253 tryparedoxin peroxida 91.6 0.13 2.7E-06 45.2 2.3 38 72-109 36-76 (199)
151 KOG3170 Conserved phosducin-li 90.9 0.45 9.8E-06 44.3 5.2 60 53-112 92-151 (240)
152 PF03190 Thioredox_DsbH: Prote 90.8 0.16 3.6E-06 44.8 2.3 38 55-95 23-61 (163)
153 TIGR02181 GRX_bact Glutaredoxi 90.7 0.07 1.5E-06 39.5 -0.1 23 77-99 2-24 (79)
154 PF13192 Thioredoxin_3: Thiore 90.5 0.32 7E-06 36.4 3.4 43 77-122 3-45 (76)
155 cd02981 PDI_b_family Protein D 90.3 1.3 2.8E-05 33.4 6.6 77 55-140 2-93 (97)
156 TIGR02190 GlrX-dom Glutaredoxi 90.3 0.16 3.4E-06 38.2 1.5 30 72-101 6-35 (79)
157 cd02972 DsbA_family DsbA famil 90.1 0.27 5.9E-06 35.6 2.6 26 77-102 2-27 (98)
158 cd03019 DsbA_DsbA DsbA family, 90.1 0.26 5.5E-06 40.9 2.8 33 71-103 14-46 (178)
159 PTZ00137 2-Cys peroxiredoxin; 89.8 0.24 5.3E-06 46.4 2.7 38 72-109 98-138 (261)
160 PRK13189 peroxiredoxin; Provis 89.2 0.3 6.4E-06 44.2 2.7 38 72-109 35-75 (222)
161 cd03027 GRX_DEP Glutaredoxin ( 89.1 0.21 4.6E-06 36.6 1.4 24 76-99 3-26 (73)
162 PRK13703 conjugal pilus assemb 88.9 0.26 5.7E-06 46.1 2.2 41 61-102 133-173 (248)
163 PRK13190 putative peroxiredoxi 88.8 0.26 5.7E-06 43.6 2.0 32 72-103 27-59 (202)
164 PF00462 Glutaredoxin: Glutare 88.0 0.3 6.4E-06 34.5 1.5 25 76-100 1-25 (60)
165 TIGR02739 TraF type-F conjugat 86.9 0.46 9.9E-06 44.7 2.5 40 62-102 141-180 (256)
166 cd03016 PRX_1cys Peroxiredoxin 86.7 0.35 7.5E-06 42.7 1.5 30 74-103 28-57 (203)
167 cd03418 GRX_GRXb_1_3_like Glut 86.4 0.37 8.1E-06 34.8 1.3 24 76-99 2-25 (75)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 86.1 0.52 1.1E-05 41.0 2.2 26 71-96 76-101 (197)
169 PRK13599 putative peroxiredoxi 85.0 0.67 1.5E-05 41.8 2.5 38 72-109 28-68 (215)
170 PF07912 ERp29_N: ERp29, N-ter 84.2 2.2 4.8E-05 36.6 5.1 86 53-146 5-121 (126)
171 PRK13191 putative peroxiredoxi 83.7 0.78 1.7E-05 41.3 2.3 38 72-109 33-73 (215)
172 TIGR00365 monothiol glutaredox 83.4 1 2.3E-05 35.6 2.7 35 60-99 3-42 (97)
173 PF13462 Thioredoxin_4: Thiore 83.3 1.3 2.9E-05 35.9 3.4 39 70-108 10-48 (162)
174 KOG0911 Glutaredoxin-related p 83.2 0.27 5.9E-06 45.7 -0.8 51 71-122 16-66 (227)
175 PRK10824 glutaredoxin-4; Provi 82.7 0.58 1.3E-05 39.0 1.0 37 60-101 6-47 (115)
176 PRK10638 glutaredoxin 3; Provi 82.4 0.53 1.2E-05 35.5 0.6 26 76-101 4-29 (83)
177 PF01216 Calsequestrin: Calseq 81.0 3.4 7.4E-05 41.1 5.8 94 51-152 33-151 (383)
178 cd03029 GRX_hybridPRX5 Glutare 80.4 1 2.3E-05 32.7 1.6 23 76-98 3-25 (72)
179 KOG1752 Glutaredoxin and relat 79.5 1.6 3.6E-05 35.8 2.6 70 60-156 5-75 (104)
180 cd03028 GRX_PICOT_like Glutare 79.1 1 2.3E-05 34.8 1.3 18 82-99 21-38 (90)
181 KOG2603 Oligosaccharyltransfer 78.6 4.7 0.0001 39.6 5.8 99 49-147 37-169 (331)
182 PRK10329 glutaredoxin-like pro 75.7 1.6 3.4E-05 33.6 1.4 23 76-98 3-25 (81)
183 cd03060 GST_N_Omega_like GST_N 72.9 1.9 4.1E-05 31.2 1.2 25 77-101 2-26 (71)
184 PRK10954 periplasmic protein d 72.8 4.1 9E-05 35.9 3.5 31 74-104 39-72 (207)
185 TIGR02194 GlrX_NrdH Glutaredox 72.1 1.8 3.8E-05 31.7 0.9 22 77-98 2-23 (72)
186 cd02991 UAS_ETEA UAS family, E 71.7 2.3 5E-05 35.0 1.5 31 61-91 5-40 (116)
187 PRK10877 protein disulfide iso 71.1 3.5 7.5E-05 37.6 2.7 30 70-99 105-134 (232)
188 PTZ00062 glutaredoxin; Provisi 70.6 3.5 7.6E-05 37.4 2.6 20 80-99 124-143 (204)
189 PF09726 Macoilin: Transmembra 64.2 9.9 0.00022 40.6 4.8 40 181-220 72-119 (697)
190 cd00570 GST_N_family Glutathio 60.1 4.3 9.3E-05 27.2 0.8 25 77-101 2-26 (71)
191 PF13848 Thioredoxin_6: Thiore 58.6 47 0.001 27.3 7.0 57 54-112 79-135 (184)
192 cd03037 GST_N_GRX2 GST_N famil 56.9 5 0.00011 28.8 0.8 25 77-101 2-26 (71)
193 PRK12759 bifunctional gluaredo 54.3 6.7 0.00015 38.8 1.4 26 76-101 4-29 (410)
194 cd03040 GST_N_mPGES2 GST_N fam 52.2 8.8 0.00019 27.8 1.4 23 77-99 3-25 (77)
195 PRK11509 hydrogenase-1 operon 52.0 49 0.0011 28.3 6.1 83 54-143 19-123 (132)
196 cd03051 GST_N_GTT2_like GST_N 51.8 7.1 0.00015 27.4 0.9 26 77-102 2-27 (74)
197 COG2143 Thioredoxin-related pr 51.4 25 0.00055 31.9 4.4 61 9-92 2-62 (182)
198 cd02977 ArsC_family Arsenate R 51.0 7.7 0.00017 30.5 1.0 25 77-101 2-26 (105)
199 COG0695 GrxC Glutaredoxin and 48.1 11 0.00023 28.9 1.4 23 76-98 3-25 (80)
200 cd03059 GST_N_SspA GST_N famil 45.6 10 0.00022 26.8 0.9 25 77-101 2-26 (73)
201 PRK11657 dsbG disulfide isomer 44.7 18 0.00039 33.4 2.6 29 71-99 116-144 (251)
202 PF13417 GST_N_3: Glutathione 42.7 11 0.00024 27.6 0.7 23 78-100 1-23 (75)
203 PF05768 DUF836: Glutaredoxin- 38.1 29 0.00062 26.3 2.4 45 76-122 2-46 (81)
204 PF07234 DUF1426: Protein of u 35.4 97 0.0021 26.1 5.2 25 179-203 13-37 (117)
205 PF00837 T4_deiodinase: Iodoth 35.1 23 0.0005 33.4 1.7 57 52-108 82-138 (237)
206 cd03041 GST_N_2GST_N GST_N fam 34.5 17 0.00036 26.8 0.6 23 76-98 2-24 (77)
207 PHA01399 membrane protein P6 33.7 57 0.0012 30.4 3.9 16 194-209 71-86 (242)
208 cd03036 ArsC_like Arsenate Red 32.9 21 0.00046 28.7 1.0 22 77-98 2-23 (111)
209 cd03067 PDI_b_PDIR_N PDIb fami 32.6 1E+02 0.0022 26.2 4.9 77 58-141 8-108 (112)
210 PRK01655 spxA transcriptional 32.5 24 0.00053 29.4 1.3 26 76-101 2-27 (131)
211 TIGR03143 AhpF_homolog putativ 30.6 1.7E+02 0.0036 29.9 7.1 86 62-148 357-461 (555)
212 cd03045 GST_N_Delta_Epsilon GS 30.4 25 0.00054 25.0 0.9 26 77-102 2-27 (74)
213 COG5331 Uncharacterized protei 29.0 51 0.0011 28.8 2.6 17 181-197 86-102 (139)
214 KOG3171 Conserved phosducin-li 27.2 2.1E+02 0.0045 27.5 6.5 75 53-129 139-222 (273)
215 TIGR01617 arsC_related transcr 25.8 35 0.00076 27.5 1.1 22 77-98 2-23 (117)
216 PF13743 Thioredoxin_5: Thiore 23.4 56 0.0012 28.4 2.0 27 78-104 2-28 (176)
217 PF06053 DUF929: Domain of unk 22.4 58 0.0013 30.8 2.0 29 71-99 57-86 (249)
218 KOG1672 ATP binding protein [P 21.8 1.3E+02 0.0029 28.1 4.1 55 54-112 68-124 (211)
219 KOG2640 Thioredoxin [Function 21.4 34 0.00074 33.6 0.3 49 73-122 175-223 (319)
220 PRK15317 alkyl hydroperoxide r 20.7 2.9E+02 0.0063 27.8 6.6 83 61-145 9-98 (517)
221 cd03025 DsbA_FrnE_like DsbA fa 20.1 78 0.0017 26.5 2.1 27 76-102 3-29 (193)
No 1
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=100.00 E-value=1.6e-44 Score=338.40 Aligned_cols=248 Identities=40% Similarity=0.652 Sum_probs=218.2
Q ss_pred cCCCCCCchhhhcccCCCCCCCC---CCCCCeeechhhHHHHhhccCC--CcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 27 ASLCPQDSVVFLNNLQSQCPPGI---SPNPPFEVDGEFLDRALTSKQR--NAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 27 ~~~Cp~~~~~~~~~~~~~Cp~~~---~~~pV~~vd~~~ld~iL~~~~~--~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
.+.|+.+++-+...+-..||-.. .++++.++||+-++..++..++ +++|.++|||+||||++..+|.|+-.+++|
T Consensus 26 ~~vc~~esa~~~~~l~~e~~~~lh~~~~~~~~e~~~~~l~~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~ 105 (319)
T KOG2640|consen 26 LPVCGVESALFSIRLLRECPRSLHRPSFEEAIEVDGDCLQVLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLF 105 (319)
T ss_pred cceeeeeehhhhhhhhhhccccccCCCCchhhhcccchhhHHHHhhccccCCcccccchhcccCcccccCcccchhhhhc
Confidence 34799999999999888886222 2355689999999888877655 799999999999999999999999999999
Q ss_pred CCCcceeEeeccCCcccchhc----------------eeecCCccccChHHHHH-HHHHhC-------------CCCccc
Q 046260 102 PQMEHYTIEQSSALPRYLLTY----------------FQYNGFIGCDLLNFLLV-SLLFAG-------------FDPVEY 151 (281)
Q Consensus 102 P~i~~vaie~s~~~psi~srY----------------~~Y~G~~~~RtlesLv~-~~~~TG-------------i~p~~~ 151 (281)
+++.|+++|+++..|++.++| ..|+|. |++++|++ |.+.|+ .++..+
T Consensus 106 ~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~---r~l~sLv~fy~~i~~~~v~ie~~d~~~~~~~~ry 182 (319)
T KOG2640|consen 106 SSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGE---RDLASLVNFYTEITPMSVLIEILDCTSCLEPVRY 182 (319)
T ss_pred cccccccHHHHhhcccchhccccccCCcceeeccccchhhccc---ccHHHHHHHHHhhccchhcccccCcccceeeeEe
Confidence 999999999999999999988 899999 99999999 999996 333333
Q ss_pred cccccccccc---cCCCCCCCC-chhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhhhh
Q 046260 152 FAEDESISLE---RTDHPWFVS-STREIIQREPYLVFAVLFLCLRVLVYIFPEVLSRLKAFWVSYVPHLNLEIFGETSQL 227 (281)
Q Consensus 152 ~~v~~~~~~~---~~~~~w~~~-Sp~~~l~~e~yL~la~lFv~lr~ly~~~P~~~s~ik~~W~~~~~~~nl~~~~e~~~~ 227 (281)
.+...++... ....+|+++ ++.|++++|+|++||+.|+++++...+||.+.+++|.+|.++.+|+++|+|+|++
T Consensus 183 ~~~~~~t~l~~p~~~~~~~~r~~~~~e~~~~~~~~slat~fv~l~~~~li~P~a~~~v~~~~~~~~~~l~l~~l~e~~-- 260 (319)
T KOG2640|consen 183 VPEGGPTILLAPDGNLFTWARPASKFELLRQETYSSLATVFVSLKNNILIFPIAVSRVKFTWADVAPNLSLGILVETS-- 260 (319)
T ss_pred ccccCcccccCcCCCcchhcccccccchhhhhhHHHHHHHHHHHHhhhhhccchhhhhheeHHhhcccccccccchhh--
Confidence 3333333321 122399998 9999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHhhhhccccccccchhhcccchhhhhh-hccceecCCCCCCCC
Q 046260 228 FGRALHMVDVRRVLTKLRICKTRNFREGAKNARVWAS-SLASVSLGESSSTRT 279 (281)
Q Consensus 228 l~~~~~~~dvr~~~~kl~~~k~~n~~egA~nar~WAS-SlasvSlGe~ss~~~ 279 (281)
+||.+||+|+++.|-++.+.|++|||++|||||+||+ |+|+||||++|++.+
T Consensus 261 f~~~~~~v~~~~~~i~l~l~~~~~lq~~~~na~~w~~~~la~~si~~~S~~~~ 313 (319)
T KOG2640|consen 261 FERKLHMVDTYLLWIELCLTKTRNLQWFAKNARAWASSSLASVSIRTESSSSQ 313 (319)
T ss_pred hhhhhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhccCCCcccc
Confidence 9999999999999998888899999999999999997 999999999988754
No 2
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.65 E-value=5.4e-17 Score=153.97 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=72.2
Q ss_pred echhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhcc----CCCCc-ceeEeeccCCcccchhc---------
Q 046260 57 VDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSM----FPQME-HYTIEQSSALPRYLLTY--------- 122 (281)
Q Consensus 57 vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~----FP~i~-~vaie~s~~~psi~srY--------- 122 (281)
++.+|++.+|+ +++.|+|+|||+||||||+|+|+|+++|.. ||+-+ .++.++|+++..|..||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLK 77 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceee
Confidence 35679999998 589999999999999999999999999975 78633 57888998888888777
Q ss_pred ---------eeecCCccccChHHHHHHHHHhCCCC
Q 046260 123 ---------FQYNGFIGCDLLNFLLVSLLFAGFDP 148 (281)
Q Consensus 123 ---------~~Y~G~~~~RtlesLv~~~~~TGi~p 148 (281)
++|+|+ |++|+|++|.++.--.|
T Consensus 78 vfrnG~~~~rEYRg~---RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQ---RSVEALIEFIEKQLSDP 109 (375)
T ss_pred eeeccchhhhhhccc---hhHHHHHHHHHHHhccH
Confidence 799999 99999999655543333
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.61 E-value=1.8e-15 Score=123.31 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccc-hhc--------
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYL-LTY-------- 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~-srY-------- 122 (281)
.+|++++++|++++....++++.++|.||||||++|++++|+|+++|+.+.+.-.++..+++..+.+. .+|
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 46999999999998543457899999999999999999999999999999753233333455555555 344
Q ss_pred ---------eeecCCccccChHHHHHH
Q 046260 123 ---------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 ---------~~Y~G~~~~RtlesLv~~ 140 (281)
.+|.|. |+.+.|+.|
T Consensus 89 ~lf~~g~~~~~y~G~---~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGP---MRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCC---CCHHHHHhh
Confidence 789999 999998763
No 4
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.56 E-value=5.9e-15 Score=113.96 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc----------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY---------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY---------- 122 (281)
.+++++++++++.+. +++.++|.|||+||++|++++|.|+++++.+.+.-.++..+++.++.+..+|
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 478999999999986 4589999999999999999999999999999754344444455555555443
Q ss_pred -------eeecCCccccChHHHHHH
Q 046260 123 -------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 -------~~Y~G~~~~RtlesLv~~ 140 (281)
.+|.|. |+.+.|.+|
T Consensus 79 ~~~g~~~~~~~G~---~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGD---RSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCC---CCHHHHHhh
Confidence 678888 999988764
No 5
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.2e-15 Score=146.71 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=75.0
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec------------cCCcccc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS------------SALPRYL 119 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s------------~~~psi~ 119 (281)
.||.+|.|+|+|+++.+ .++-|||+||||||+||++|+|+||+||..|.+...+.|... +..|+|.
T Consensus 366 ~pVkvvVgknfd~iv~d--e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLD--EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhc--cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEE
Confidence 58999999999999974 478999999999999999999999999999988766665333 3467766
Q ss_pred hh-------ceeecCCccccChHHHHHHHHHhCC
Q 046260 120 LT-------YFQYNGFIGCDLLNFLLVSLLFAGF 146 (281)
Q Consensus 120 sr-------Y~~Y~G~~~~RtlesLv~~~~~TGi 146 (281)
.. -+.|+|+ |+++.|..|.+..|-
T Consensus 444 ~~pag~k~~pv~y~g~---R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGD---RTLEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCCCCcccCCC---cchHHHHhhhccCCC
Confidence 21 1899999 999999997777665
No 6
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.51 E-value=2.1e-14 Score=113.08 Aligned_cols=68 Identities=56% Similarity=0.958 Sum_probs=58.3
Q ss_pred CCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc----------------eeecCCccccC
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY----------------FQYNGFIGCDL 133 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY----------------~~Y~G~~~~Rt 133 (281)
.+++.++|+|||+||++|+++.|.|+++++.++++.+++++.++.++.+..+| .+|.|. |+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~---~~ 92 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGT---RT 92 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCC---CC
Confidence 47899999999999999999999999999999988888887664566666555 678898 99
Q ss_pred hHHHHHH
Q 046260 134 LNFLLVS 140 (281)
Q Consensus 134 lesLv~~ 140 (281)
.++|+++
T Consensus 93 ~~~l~~f 99 (100)
T cd02999 93 LDSLAAF 99 (100)
T ss_pred HHHHHhh
Confidence 9998773
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.50 E-value=5.2e-14 Score=110.13 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=63.1
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccC----CCCc--ceeEeeccCCcccchhc---
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF----PQME--HYTIEQSSALPRYLLTY--- 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F----P~i~--~vaie~s~~~psi~srY--- 122 (281)
++|+++++++++++++ .++.++|.||||||++|++++|.|+++++.+ |+.. .++..+++.++.+..+|
T Consensus 1 ~~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 1 SEIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred CceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 3688999999999886 4789999999999999999999999999864 4321 23333344444444443
Q ss_pred ---------------eeecCCccccChHHHHHH
Q 046260 123 ---------------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 ---------------~~Y~G~~~~RtlesLv~~ 140 (281)
.+|.|. |+.++|++|
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g~---~~~~~l~~f 107 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRGQ---RSVEALAEF 107 (108)
T ss_pred cCCEEEEEeCCcCcceecCCC---CCHHHHHhh
Confidence 788899 999999774
No 8
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.49 E-value=6.3e-14 Score=108.29 Aligned_cols=83 Identities=19% Similarity=0.362 Sum_probs=63.0
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccC--Ccccchhc--------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSA--LPRYLLTY-------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~--~psi~srY-------- 122 (281)
||.+++++++++.+.. +++.++|.|||+||++|+++.|.|+++++.+.+.-.++..+++. .+.+..+|
T Consensus 1 ~v~~l~~~~~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 1 PVYELTPKNFDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred CeEEcchhhHHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 5789999999999973 46779999999999999999999999999987533333223333 34444433
Q ss_pred --------------eeecCCccccChHHHHHH
Q 046260 123 --------------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 --------------~~Y~G~~~~RtlesLv~~ 140 (281)
..|.|. ++.+.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~---~~~~~l~~f 107 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGE---RSAKAIVDF 107 (109)
T ss_pred EEEeCCCcccccccccccCc---cCHHHHHHH
Confidence 468888 999998874
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.48 E-value=7.4e-14 Score=107.85 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc----------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY---------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY---------- 122 (281)
+|++++++++++++.. +++.++|.|||+||++|+++.|.|+++++.+...-.++..+++.++.+..+|
T Consensus 2 ~v~~l~~~~f~~~i~~--~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLN--RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhc--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 5789999999998863 4669999999999999999999999999998643344444455556655544
Q ss_pred --------eeecCCccccC-hHHHHH
Q 046260 123 --------FQYNGFIGCDL-LNFLLV 139 (281)
Q Consensus 123 --------~~Y~G~~~~Rt-lesLv~ 139 (281)
.+|.|. ++ .++|.+
T Consensus 80 ~~~g~~~~~~~~G~---~~~~~~l~~ 102 (104)
T cd03004 80 YPGNASKYHSYNGW---HRDADSILE 102 (104)
T ss_pred EcCCCCCceEccCC---CCCHHHHHh
Confidence 567777 76 777765
No 10
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.5e-14 Score=140.64 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc---ceeEeeccCCcccchhc-----
Q 046260 51 PNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME---HYTIEQSSALPRYLLTY----- 122 (281)
Q Consensus 51 ~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~---~vaie~s~~~psi~srY----- 122 (281)
...|++|+++|+++.++ .+++++|+||||||+||++|+|.|+++|+...... .++-.+++....+.++|
T Consensus 24 ~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred ccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 45699999999999998 68999999999999999999999999998754321 34444455555555665
Q ss_pred ------------eeecCCccccChHHHHH-HHHHhCCC
Q 046260 123 ------------FQYNGFIGCDLLNFLLV-SLLFAGFD 147 (281)
Q Consensus 123 ------------~~Y~G~~~~RtlesLv~-~~~~TGi~ 147 (281)
..|+|+ |+.|+++. ..+++|=-
T Consensus 101 PTlkiFrnG~~~~~Y~G~---r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGP---READGIVKWLKKQSGPA 135 (493)
T ss_pred CeEEEEecCCcceeccCc---ccHHHHHHHHHhccCCC
Confidence 689999 99999999 66667743
No 11
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.47 E-value=1.2e-13 Score=106.24 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=60.9
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc-ceeEeeccCCcccchhc---------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME-HYTIEQSSALPRYLLTY--------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~-~vaie~s~~~psi~srY--------- 122 (281)
.|++++++++++++. ++ ++|+|||+||++|+.+.|.|+++++.+.... .++..+++..+.+..+|
T Consensus 2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 588999999999885 34 6799999999999999999999998765322 23333344455555444
Q ss_pred -------eeecCCccccChHHHHHH
Q 046260 123 -------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 -------~~Y~G~~~~RtlesLv~~ 140 (281)
..|.|. ++.+.|.++
T Consensus 77 ~~~~g~~~~~~G~---~~~~~l~~~ 98 (101)
T cd02994 77 HAKDGVFRRYQGP---RDKEDLISF 98 (101)
T ss_pred EeCCCCEEEecCC---CCHHHHHHH
Confidence 678898 999998874
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.46 E-value=2.5e-13 Score=102.34 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=67.8
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC-CCcceeEeeccCCcccchhc----------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP-QMEHYTIEQSSALPRYLLTY---------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP-~i~~vaie~s~~~psi~srY---------- 122 (281)
|.+++++++++.+.. +++.++|.|||+||++|+.++|.|+++++.++ ++..+.++.. ..+.+..+|
T Consensus 1 v~~lt~~~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD-ENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT-TSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh-ccchhhhccCCCCCCEEEE
Confidence 678999999999983 47899999999999999999999999999999 6655556543 455555555
Q ss_pred -------eeecCCccccChHHHHHH
Q 046260 123 -------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 -------~~Y~G~~~~RtlesLv~~ 140 (281)
.+|.|. ++.++|.++
T Consensus 78 ~~~g~~~~~~~g~---~~~~~l~~~ 99 (103)
T PF00085_consen 78 FKNGKEVKRYNGP---RNAESLIEF 99 (103)
T ss_dssp EETTEEEEEEESS---SSHHHHHHH
T ss_pred EECCcEEEEEECC---CCHHHHHHH
Confidence 799999 999999983
No 13
>PRK10996 thioredoxin 2; Provisional
Probab=99.45 E-value=3.5e-13 Score=112.01 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=76.1
Q ss_pred CchhhhcccCCCCCC---CCCCCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC-Cccee
Q 046260 33 DSVVFLNNLQSQCPP---GISPNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYT 108 (281)
Q Consensus 33 ~~~~~~~~~~~~Cp~---~~~~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~va 108 (281)
++|.++...+++||. +.....++++++++++++++ .++.++|.|||+||+.|+++.|.|+++++.+.. +..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~ 89 (139)
T PRK10996 13 RLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVK 89 (139)
T ss_pred CCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 558999999999993 34446688999999999886 478999999999999999999999999988753 33344
Q ss_pred EeeccCCcccchhc-----------------eeecCCccccChHHHHH
Q 046260 109 IEQSSALPRYLLTY-----------------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 109 ie~s~~~psi~srY-----------------~~Y~G~~~~RtlesLv~ 139 (281)
++ .+..+.+..+| ..+.|. .+.+.|.+
T Consensus 90 vd-~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~---~~~e~l~~ 133 (139)
T PRK10996 90 VN-TEAERELSARFRIRSIPTIMIFKNGQVVDMLNGA---VPKAPFDS 133 (139)
T ss_pred Ee-CCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCC---CCHHHHHH
Confidence 43 33455555555 445666 66666666
No 14
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.41 E-value=5.7e-13 Score=101.48 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=64.6
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-----------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY----------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY----------- 122 (281)
|.+++++++++.+.. +++.++|.|||+||++|++++|.|+++++.++..-.++..+++.++.+..+|
T Consensus 2 v~~l~~~~~~~~i~~--~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLN--SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhc--CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 678999999999863 3567999999999999999999999999998754445544454555555443
Q ss_pred -------eeecCCccccChHHHHHH
Q 046260 123 -------FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 -------~~Y~G~~~~RtlesLv~~ 140 (281)
.+|.|+ ++.+.|+++
T Consensus 80 ~~~~~~~~~~~g~---~~~~~l~~~ 101 (103)
T cd03001 80 GAGKNSPQDYQGG---RTAKAIVSA 101 (103)
T ss_pred CCCCcceeecCCC---CCHHHHHHH
Confidence 678898 999999774
No 15
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.38 E-value=7.3e-13 Score=100.74 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=59.6
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC----CcceeEeeccCCcccchhc-------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ----MEHYTIEQSSALPRYLLTY------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~----i~~vaie~s~~~psi~srY------- 122 (281)
+.+++++++++.++. + .++|.|||+||++|+++.|.|+++++.+.. +..+.++ ++..+.+..+|
T Consensus 2 ~~~l~~~~f~~~~~~---~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAE---G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD-CTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eeECCHHHHHHHhhc---C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEE-CCCChhhHhhcCCCcCCE
Confidence 678999999999962 3 499999999999999999999999998754 3333444 44455554443
Q ss_pred ----------eeecCCccccChHHHHH
Q 046260 123 ----------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 ----------~~Y~G~~~~RtlesLv~ 139 (281)
.+|.|. ++.+.|.+
T Consensus 77 ~~~~~~g~~~~~~~G~---~~~~~l~~ 100 (102)
T cd03005 77 LLLFKDGEKVDKYKGT---RDLDSLKE 100 (102)
T ss_pred EEEEeCCCeeeEeeCC---CCHHHHHh
Confidence 578888 88888765
No 16
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.38 E-value=9e-13 Score=104.13 Aligned_cols=84 Identities=18% Similarity=0.381 Sum_probs=62.4
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCC--cceeEeeccC-Ccccchh-c------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM--EHYTIEQSSA-LPRYLLT-Y------ 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i--~~vaie~s~~-~psi~sr-Y------ 122 (281)
.|.+++.+++++++...++++.++|.|||+|||+|+++.|+|+++++.+.+. ...+++ ++. ...+..+ |
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd-~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFN-ADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEE-CCccchhhHHhhcCCCcCC
Confidence 5889999999999875556789999999999999999999999999988743 223333 322 1222211 1
Q ss_pred ------------eeecC-CccccChHHHHHH
Q 046260 123 ------------FQYNG-FIGCDLLNFLLVS 140 (281)
Q Consensus 123 ------------~~Y~G-~~~~RtlesLv~~ 140 (281)
..|.| . |+.++|++|
T Consensus 81 ti~~f~~~~~~~~~y~g~~---~~~~~l~~f 108 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQ---RDVDSLLMF 108 (109)
T ss_pred EEEEEcCCCCCceeccCCC---CCHHHHHhh
Confidence 67888 5 899998764
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.34 E-value=4.1e-12 Score=115.17 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=65.8
Q ss_pred CCCeeechhhHHHHhhccC--CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-------
Q 046260 52 NPPFEVDGEFLDRALTSKQ--RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY------- 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~--~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY------- 122 (281)
+.|+++|++++++++...+ .++.++|+||||||++|++++|.|+++++.+++.-.++..+++.++.+..+|
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 5699999999999886431 2578999999999999999999999999999753334434455556665555
Q ss_pred ---------eee-cCCccccChHHHHHH
Q 046260 123 ---------FQY-NGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 ---------~~Y-~G~~~~RtlesLv~~ 140 (281)
..| .|. ++.|+|.++
T Consensus 110 l~~f~~G~~v~~~~G~---~s~e~L~~f 134 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGD---RSTEKLAAF 134 (224)
T ss_pred EEEEECCEEEEeeCCC---CCHHHHHHH
Confidence 333 466 999999884
No 18
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.34 E-value=2.5e-12 Score=97.61 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=60.7
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcce---eEeec----------cCCcccc
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHY---TIEQS----------SALPRYL 119 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~v---aie~s----------~~~psi~ 119 (281)
||.+++++++++++.. .++.++|+||||||++|+.+.|.|+++++.+++...+ .++.. ...|++.
T Consensus 1 ~v~~l~~~~f~~~i~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 1 PVKVVVGKNFDEVVLD--SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTIL 78 (104)
T ss_pred CeEEEchhhhHHHHhC--CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEE
Confidence 6899999999999873 3578999999999999999999999999998763332 23321 1234333
Q ss_pred -h------hceeecCCccccChHHHHH
Q 046260 120 -L------TYFQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 120 -s------rY~~Y~G~~~~RtlesLv~ 139 (281)
. +-.+|.|. ++.+.|++
T Consensus 79 ~~~~~~~~~~~~~~g~---~~~~~l~~ 102 (104)
T cd02995 79 FFPAGDKSNPIKYEGD---RTLEDLIK 102 (104)
T ss_pred EEcCCCcCCceEccCC---cCHHHHHh
Confidence 0 11567888 88888875
No 19
>PTZ00102 disulphide isomerase; Provisional
Probab=99.28 E-value=1.4e-11 Score=117.60 Aligned_cols=88 Identities=16% Similarity=0.310 Sum_probs=68.4
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC----CCcceeEeeccCCcccchhc-----
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP----QMEHYTIEQSSALPRYLLTY----- 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP----~i~~vaie~s~~~psi~srY----- 122 (281)
+.+.++++++++++++ +++.++|.|||+||++|++++|.|++++..+- ++. ++..+++.++.+..+|
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~-~~~vd~~~~~~l~~~~~i~~~ 107 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIV-LASVDATEEMELAQEFGVRGY 107 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEE-EEEEECCCCHHHHHhcCCCcc
Confidence 5699999999999996 46799999999999999999999999997653 232 3333444445554443
Q ss_pred -----------eeecCCccccChHHHHH-HHHHhCC
Q 046260 123 -----------FQYNGFIGCDLLNFLLV-SLLFAGF 146 (281)
Q Consensus 123 -----------~~Y~G~~~~RtlesLv~-~~~~TGi 146 (281)
.+|.|. |+.+.|++ ..+.+|-
T Consensus 108 Pt~~~~~~g~~~~y~g~---~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 108 PTIKFFNKGNPVNYSGG---RTADGIVSWIKKLTGP 140 (477)
T ss_pred cEEEEEECCceEEecCC---CCHHHHHHHHHHhhCC
Confidence 689999 99999999 6666663
No 20
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.27 E-value=7.7e-12 Score=124.00 Aligned_cols=89 Identities=17% Similarity=0.344 Sum_probs=66.6
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCC--cceeEeec-------------cCCc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM--EHYTIEQS-------------SALP 116 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i--~~vaie~s-------------~~~p 116 (281)
+.|++++.+|+++++...++++.++|.||||||++|+.|.|+|++++..|... ..+.++.. +..|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 35889999999999965567899999999999999999999999999998642 23333211 1234
Q ss_pred ccch-h-----ceeec-CCccccChHHHHHHHHH
Q 046260 117 RYLL-T-----YFQYN-GFIGCDLLNFLLVSLLF 143 (281)
Q Consensus 117 si~s-r-----Y~~Y~-G~~~~RtlesLv~~~~~ 143 (281)
++.. + ...|. |. |++|+|+.|.+.
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~---R~~e~L~~Fv~~ 461 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEK---RDVDSLMSFVNL 461 (463)
T ss_pred eEEEEECCCCCceeCCCCC---CCHHHHHHHHHh
Confidence 4331 1 16797 58 999999996553
No 21
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.27 E-value=5.6e-12 Score=101.49 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=44.4
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
+|++++++++++++++. .++.++|+|||+||++|+.+.|.|++++..|.
T Consensus 1 ~~v~~l~~~~f~~~i~~--~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~ 49 (114)
T cd02992 1 DPVIVLDAASFNSALLG--SPSAWLVEFYASWCGHCRAFAPTWKKLARDLR 49 (114)
T ss_pred CCeEECCHHhHHHHHhc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHH
Confidence 57999999999999973 34799999999999999999999999999874
No 22
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.26 E-value=5.3e-12 Score=120.77 Aligned_cols=83 Identities=16% Similarity=0.337 Sum_probs=64.1
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc---ceeEeeccCCcccchhc-------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME---HYTIEQSSALPRYLLTY------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~---~vaie~s~~~psi~srY------- 122 (281)
-|..+|+++.| ++.++.-+|+||||||.|||+|.|+|++.+-...+++ .+..-+++.+|++.+++
T Consensus 29 ~VeDLddkFkd-----nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 29 AVEDLDDKFKD-----NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred hhhhhhHHhhh-----cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence 46667766654 3457899999999999999999999999998766654 23333455566666554
Q ss_pred ---------eeecCCccccChHHHHHHHHH
Q 046260 123 ---------FQYNGFIGCDLLNFLLVSLLF 143 (281)
Q Consensus 123 ---------~~Y~G~~~~RtlesLv~~~~~ 143 (281)
..|+|+ |+.|++++|++.
T Consensus 104 Ik~~kgd~a~dYRG~---R~Kd~iieFAhR 130 (468)
T KOG4277|consen 104 IKFFKGDHAIDYRGG---REKDAIIEFAHR 130 (468)
T ss_pred EEEecCCeeeecCCC---ccHHHHHHHHHh
Confidence 899999 999999997765
No 23
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.25 E-value=1.7e-11 Score=93.22 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=42.6
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
|.++++.+++++++ +++.++|+|||+||+.|+.+.|.++++++.+++
T Consensus 2 ~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~ 48 (104)
T cd02997 2 VVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE 48 (104)
T ss_pred eEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh
Confidence 67899999999987 466999999999999999999999999998874
No 24
>PLN02309 5'-adenylylsulfate reductase
Probab=99.23 E-value=1.4e-11 Score=121.97 Aligned_cols=87 Identities=20% Similarity=0.375 Sum_probs=66.2
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC--CcceeEeec-------------cCCcc
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTIEQS-------------SALPR 117 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vaie~s-------------~~~ps 117 (281)
.|++++.+++++++...+.++.++|+||||||++|++|.|.|++++..+.. +....++.. +..|+
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PT 425 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 425 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeE
Confidence 589999999999997666789999999999999999999999999999864 333333322 12344
Q ss_pred cch------hceeecC-CccccChHHHHHHHH
Q 046260 118 YLL------TYFQYNG-FIGCDLLNFLLVSLL 142 (281)
Q Consensus 118 i~s------rY~~Y~G-~~~~RtlesLv~~~~ 142 (281)
+.. +.+.|.| . ||+++|++|.+
T Consensus 426 il~f~~g~~~~v~Y~~~~---R~~~~L~~fv~ 454 (457)
T PLN02309 426 ILLFPKNSSRPIKYPSEK---RDVDSLLSFVN 454 (457)
T ss_pred EEEEeCCCCCeeecCCCC---cCHHHHHHHHH
Confidence 331 1178985 7 99999999543
No 25
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.22 E-value=2.4e-11 Score=92.09 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=60.8
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC---CcceeEeeccC-Ccccchhc-------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ---MEHYTIEQSSA-LPRYLLTY------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~---i~~vaie~s~~-~psi~srY------- 122 (281)
|.++|++++++++.. .++.++|.|||+||++|+++.|.|+++++.+.. +..+.++ ++. .+.+..+|
T Consensus 2 ~~~l~~~~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~~~~~~~~~i~~~P~ 78 (105)
T cd02998 2 VVELTDSNFDKVVGD--DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVD-ADEANKDLAKKYGVSGFPT 78 (105)
T ss_pred eEEcchhcHHHHhcC--CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEE-CCCcchhhHHhCCCCCcCE
Confidence 678999999998763 356899999999999999999999999999863 3233444 334 56666555
Q ss_pred -----------eeecCCccccChHHHHH
Q 046260 123 -----------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 -----------~~Y~G~~~~RtlesLv~ 139 (281)
..|.|. ++.+.|.+
T Consensus 79 ~~~~~~~~~~~~~~~g~---~~~~~l~~ 103 (105)
T cd02998 79 LKFFPKGSTEPVKYEGG---RDLEDLVK 103 (105)
T ss_pred EEEEeCCCCCccccCCc---cCHHHHHh
Confidence 456777 88887765
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.22 E-value=5.6e-11 Score=92.71 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc--------
Q 046260 51 PNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY-------- 122 (281)
Q Consensus 51 ~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY-------- 122 (281)
.+-|++++++++++.+. +.++.++|.|||+|||.|+.+.|.|+++++.++..-.++..+++..+.+..+|
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 45689999999997654 24778999999999999999999999999999653334444455556655554
Q ss_pred ---------eeecCCccccChHHHHH
Q 046260 123 ---------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 ---------~~Y~G~~~~RtlesLv~ 139 (281)
.++.|. .+.+.|.+
T Consensus 80 ~~~~~G~~~~~~~G~---~~~~~l~~ 102 (109)
T PRK09381 80 LLFKNGEVAATKVGA---LSKGQLKE 102 (109)
T ss_pred EEEeCCeEEEEecCC---CCHHHHHH
Confidence 455676 77777766
No 27
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.20 E-value=3.1e-11 Score=91.03 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=59.8
Q ss_pred echhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc--ceeEeeccCCcccchhc------------
Q 046260 57 VDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME--HYTIEQSSALPRYLLTY------------ 122 (281)
Q Consensus 57 vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~--~vaie~s~~~psi~srY------------ 122 (281)
|+++++++++. ++++++|.|||+||+.|+.+.|.|+++++.+.... .++..+++..+.+..+|
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 57889999986 58899999999999999999999999999987522 23333354555555444
Q ss_pred -----eeecCCccccChHHHHH
Q 046260 123 -----FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 -----~~Y~G~~~~RtlesLv~ 139 (281)
.+|.|. ++.+.|.+
T Consensus 78 ~~~~~~~~~g~---~~~~~l~~ 96 (102)
T TIGR01126 78 KGKKPVDYEGG---RDLEAIVE 96 (102)
T ss_pred CCCcceeecCC---CCHHHHHH
Confidence 568888 88888877
No 28
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.19 E-value=4.3e-11 Score=93.27 Aligned_cols=76 Identities=13% Similarity=0.279 Sum_probs=54.6
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc---ceeEeeccCCcccchhc--------------
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME---HYTIEQSSALPRYLLTY-------------- 122 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~---~vaie~s~~~psi~srY-------------- 122 (281)
++++++. +++.++|.|||+|||+|+.+.|+|+++++.+.+.. .++..+++..+.+..+|
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 5666643 36799999999999999999999999999874321 23333444556665554
Q ss_pred --eeecCCccccChHHHHHHHH
Q 046260 123 --FQYNGFIGCDLLNFLLVSLL 142 (281)
Q Consensus 123 --~~Y~G~~~~RtlesLv~~~~ 142 (281)
..|.|. ++.+.|.++.+
T Consensus 83 ~~~~~~G~---~~~~~l~~~~~ 101 (104)
T cd03000 83 LAYNYRGP---RTKDDIVEFAN 101 (104)
T ss_pred CceeecCC---CCHHHHHHHHH
Confidence 557777 89998887443
No 29
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.19 E-value=3.4e-11 Score=95.98 Aligned_cols=82 Identities=9% Similarity=0.104 Sum_probs=57.6
Q ss_pred eechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC--CcceeEeeccCCcccchhc-----------
Q 046260 56 EVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTIEQSSALPRYLLTY----------- 122 (281)
Q Consensus 56 ~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vaie~s~~~psi~srY----------- 122 (281)
.++.+++++.+.....++.++|.||||||++|+.+.|+|+++++.+++ +....++ ++..+.+..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd-~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVN-AGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEe-ccccHHHHHHcCCccCCEEEEE
Confidence 467777776543333578999999999999999999999999999863 3333333 33344444333
Q ss_pred ------eeecCCccccChHHHHHHH
Q 046260 123 ------FQYNGFIGCDLLNFLLVSL 141 (281)
Q Consensus 123 ------~~Y~G~~~~RtlesLv~~~ 141 (281)
..+.|. ++.+.|.++.
T Consensus 87 ~~g~~~~~~~G~---~~~~~l~~~i 108 (111)
T cd02963 87 INGQVTFYHDSS---FTKQHVVDFV 108 (111)
T ss_pred ECCEEEEEecCC---CCHHHHHHHH
Confidence 455677 8888887743
No 30
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.17 E-value=2.8e-11 Score=100.28 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=57.3
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeC--CCCh---hhhcccccHHHHhccCCCCcceeEeec---------------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYA--SWCP---FSRDVRPTFEALSSMFPQMEHYTIEQS--------------- 112 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA--~WCp---fSk~L~PiFe~LA~~FP~i~~vaie~s--------------- 112 (281)
-+++||++|+++++. ++++++|.||| |||. +|++|+|.|.+.+.. + .+|-.++
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v-~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---L-LVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---e-EEEEEecccccchhhHHHHHHh
Confidence 378999999999997 67899999999 8888 888888888776653 1 1222222
Q ss_pred --c--CCcccch-------hceeecC-CccccChHHHHH-HHHH
Q 046260 113 --S--ALPRYLL-------TYFQYNG-FIGCDLLNFLLV-SLLF 143 (281)
Q Consensus 113 --~--~~psi~s-------rY~~Y~G-~~~~RtlesLv~-~~~~ 143 (281)
+ .+|+|.. ....|.| . |++++|++ +.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~---r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGAD---VTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCc---ccHHHHHHHHHhc
Confidence 2 4555431 1156888 6 99999999 4443
No 31
>PTZ00102 disulphide isomerase; Provisional
Probab=99.17 E-value=7.8e-11 Score=112.53 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=65.7
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeE--eeccCC------------cc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTI--EQSSAL------------PR 117 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vai--e~s~~~------------ps 117 (281)
.+|..|+++++++++. ++++.++|.|||+||++|+.++|.|+++++.+.+..++.+ .+++.. |+
T Consensus 357 ~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 5689999999999875 2478999999999999999999999999999876444332 223222 33
Q ss_pred cc-hhc-----eeecCCccccChHHHHHHHHHh
Q 046260 118 YL-LTY-----FQYNGFIGCDLLNFLLVSLLFA 144 (281)
Q Consensus 118 i~-srY-----~~Y~G~~~~RtlesLv~~~~~T 144 (281)
+. .+- .+|.|. |+.+.|.++.+..
T Consensus 435 ~~~~~~~~~~~~~~~G~---~~~~~l~~~i~~~ 464 (477)
T PTZ00102 435 ILFVKAGERTPIPYEGE---RTVEGFKEFVNKH 464 (477)
T ss_pred EEEEECCCcceeEecCc---CCHHHHHHHHHHc
Confidence 32 000 579999 9999999944443
No 32
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.16 E-value=2.1e-11 Score=97.09 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
..+.+++++++++.+.....++.++|.||||||+.|+.+.|++++++..++++..+.++... . .+..+|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~-~-~l~~~~ 72 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-A-FLVNYL 72 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh-h-HHHHhc
Confidence 46889999999998874333589999999999999999999999999999987666665442 2 555555
No 33
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.16 E-value=5.4e-11 Score=111.76 Aligned_cols=86 Identities=16% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC----CCcceeEeeccCCcccchhc------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP----QMEHYTIEQSSALPRYLLTY------ 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP----~i~~vaie~s~~~psi~srY------ 122 (281)
.|++++++++++++. +++.++|+||||||++|+++.|.|+++++.+. ++....++ ++..+.+..+|
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVD-ATEEKDLAQKYGVSGYP 77 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEE-CCCcHHHHHhCCCcccc
Confidence 588999999999997 47799999999999999999999999997653 34333343 43344443333
Q ss_pred ------------eeecCCccccChHHHHH-HHHHhC
Q 046260 123 ------------FQYNGFIGCDLLNFLLV-SLLFAG 145 (281)
Q Consensus 123 ------------~~Y~G~~~~RtlesLv~-~~~~TG 145 (281)
.+|.|. |+.++|.+ ..+.++
T Consensus 78 t~~~~~~g~~~~~~~~g~---~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGP---RDADGIVKYMKKQSG 110 (462)
T ss_pred EEEEEeCCccceeEecCC---CCHHHHHHHHHHhcC
Confidence 578999 99999999 666665
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.15 E-value=5.4e-11 Score=90.41 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=53.7
Q ss_pred hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-----------------e
Q 046260 61 FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY-----------------F 123 (281)
Q Consensus 61 ~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY-----------------~ 123 (281)
++++.+.. ++++.++|.|||+||+.|+++.|.++++++.|++.-.++-.+++..+.+..+| .
T Consensus 2 ~f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 46666652 24679999999999999999999999999999753233333344556665555 4
Q ss_pred eecCCccccChHHHHH
Q 046260 124 QYNGFIGCDLLNFLLV 139 (281)
Q Consensus 124 ~Y~G~~~~RtlesLv~ 139 (281)
+|.|. ++.+.|.+
T Consensus 81 ~~~g~---~~~~~l~~ 93 (96)
T cd02956 81 GFQGA---QPEEQLRQ 93 (96)
T ss_pred eecCC---CCHHHHHH
Confidence 57777 77777655
No 35
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.13 E-value=1.4e-11 Score=99.31 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=54.5
Q ss_pred Ceeech-hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 54 PFEVDG-EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 54 V~~vd~-~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+.++++ +.+++++. +++.++|.||||||+.|+.+.|+++++++.+|++..+.|+. +..+.+..+|
T Consensus 6 v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~-~~~~~l~~~~ 71 (113)
T cd02989 6 YREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNA-EKAPFLVEKL 71 (113)
T ss_pred eEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEc-ccCHHHHHHC
Confidence 566777 78888886 46899999999999999999999999999999987766764 4577777777
No 36
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.07 E-value=2.2e-10 Score=84.49 Aligned_cols=77 Identities=22% Similarity=0.424 Sum_probs=57.1
Q ss_pred eechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccC---CCCcceeEeeccCCcccchhc----------
Q 046260 56 EVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF---PQMEHYTIEQSSALPRYLLTY---------- 122 (281)
Q Consensus 56 ~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F---P~i~~vaie~s~~~psi~srY---------- 122 (281)
+++++++.+++. +++.++|.||++||+.|+.+.|.|+++++.+ ..+.++.++ ++.++.+..+|
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVD-CTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEee-ccchHHHHHhCCCCCCCEEEE
Confidence 578899999997 3459999999999999999999999999988 344444443 33344444444
Q ss_pred --------eeecCCccccChHHHHH
Q 046260 123 --------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 --------~~Y~G~~~~RtlesLv~ 139 (281)
.+|.|. ++.+.+.+
T Consensus 78 ~~~~~~~~~~~~g~---~~~~~i~~ 99 (101)
T cd02961 78 FPNGSKEPVKYEGP---RTLESLVE 99 (101)
T ss_pred EcCCCcccccCCCC---cCHHHHHh
Confidence 566777 77777654
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.07 E-value=1.7e-10 Score=95.44 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=49.0
Q ss_pred hhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 59 GEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 59 ~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
++.+++.+... .++.++|.|||+|||.|++|+|.+++++..+++.-.+...+.+..|.+..+|
T Consensus 2 ~~~~~~~i~~~-~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~ 64 (114)
T cd02954 2 GWAVDQAILSE-EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMY 64 (114)
T ss_pred HHHHHHHHhcc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHc
Confidence 46778887632 4679999999999999999999999999999975333333345677777776
No 38
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.06 E-value=3.9e-10 Score=88.60 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=43.6
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+.+++++++.. .+++.++|+|||+||+.|+.+.|.++++++.++++..+.++
T Consensus 2 ~~~~~~~~i~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd 53 (103)
T cd02985 2 SVEELDEALKK-AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVN 53 (103)
T ss_pred CHHHHHHHHHH-cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEE
Confidence 45678888863 35889999999999999999999999999999776555554
No 39
>PHA02278 thioredoxin-like protein
Probab=99.02 E-value=6.5e-10 Score=89.30 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=34.2
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++|++.+. .++.++|.||||||+.|+.++|++++++..+
T Consensus 5 ~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~ 43 (103)
T PHA02278 5 VDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESG 43 (103)
T ss_pred HHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh
Confidence 46777775 5789999999999999999999999999873
No 40
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.01 E-value=4.8e-10 Score=87.78 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=47.3
Q ss_pred eechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCC-cceeEeeccCCcccchhc
Q 046260 56 EVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM-EHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 56 ~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i-~~vaie~s~~~psi~srY 122 (281)
.-++++++++++ +++.++|.|||+||++|+.+.|.|+++++.+++. -+++..+.+ .+.+..+|
T Consensus 4 i~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~ 67 (102)
T cd02948 4 INNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRY 67 (102)
T ss_pred ccCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHc
Confidence 346788999886 5789999999999999999999999999998742 234433343 44555554
No 41
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.01 E-value=5.4e-10 Score=95.89 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=54.3
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC--CcceeEeeccCCcccchhc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vaie~s~~~psi~srY 122 (281)
..+.+++++++++.+... +++.++|+|||+|||.|+++.|.|+++++.+.+ +..+.++ ++.++.+..+|
T Consensus 28 ~~v~~l~~~~f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VD-vd~~~~la~~~ 98 (152)
T cd02962 28 EHIKYFTPKTLEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKID-IGRFPNVAEKF 98 (152)
T ss_pred CccEEcCHHHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEE-CCCCHHHHHHc
Confidence 468899999999988632 457899999999999999999999999999863 4444454 45566666555
No 42
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.01 E-value=9.5e-10 Score=91.16 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCCh--hhh--cccccHHHHhccC--CCCcceeEeeccCCcccchhc---
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCP--FSR--DVRPTFEALSSMF--PQMEHYTIEQSSALPRYLLTY--- 122 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCp--fSk--~L~PiFe~LA~~F--P~i~~vaie~s~~~psi~srY--- 122 (281)
+.|.++|++|+++.+.. +...++|.|+|+||+ ||| +++|+++++|..+ +.--.++..+++.++.+..+|
T Consensus 9 ~~v~~lt~~nF~~~v~~--~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 9 DRVIDLNEKNYKQVLKK--YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred cceeeCChhhHHHHHHh--CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 67999999999999873 345777777777775 599 9999999999887 532244445566678887777
Q ss_pred -------------eeecCCccccChHHHHHHH
Q 046260 123 -------------FQYNGFIGCDLLNFLLVSL 141 (281)
Q Consensus 123 -------------~~Y~G~~~~RtlesLv~~~ 141 (281)
+.|.|. |+.+.|+++.
T Consensus 87 ~iPTl~lfk~G~~v~~~G~---~~~~~l~~~l 115 (120)
T cd03065 87 EEDSIYVFKDDEVIEYDGE---FAADTLVEFL 115 (120)
T ss_pred cccEEEEEECCEEEEeeCC---CCHHHHHHHH
Confidence 669999 9999999844
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.00 E-value=2e-10 Score=99.87 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=59.6
Q ss_pred CCCCeeech-hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-------
Q 046260 51 PNPPFEVDG-EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY------- 122 (281)
Q Consensus 51 ~~pV~~vd~-~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY------- 122 (281)
...|.++++ +++.+++....++..|+|.|||+||+.|+.|.|++++||..||.+.++.|+... . .+..+|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~-~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA-T-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc-h-hhHHhCCCCCCCE
Confidence 345788888 888888874334469999999999999999999999999999998877776543 2 455555
Q ss_pred -eeecCC
Q 046260 123 -FQYNGF 128 (281)
Q Consensus 123 -~~Y~G~ 128 (281)
.-|+++
T Consensus 139 lllyk~G 145 (175)
T cd02987 139 LLVYKGG 145 (175)
T ss_pred EEEEECC
Confidence 566666
No 44
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.2e-10 Score=90.46 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=41.5
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+++.++|+|||+|||.|+.++|.|++||..||++..+.+|-.. .+.+...|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~ 70 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEF 70 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhc
Confidence 4699999999999999999999999999999997666555332 55555555
No 45
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.6e-10 Score=104.15 Aligned_cols=89 Identities=21% Similarity=0.384 Sum_probs=64.1
Q ss_pred CCeeechh-hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCccee--Eeec---------cCCcccc-
Q 046260 53 PPFEVDGE-FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYT--IEQS---------SALPRYL- 119 (281)
Q Consensus 53 pV~~vd~~-~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~va--ie~s---------~~~psi~- 119 (281)
||++|+++ .++..|.. ...++++|+|||+||+.|++.+|+|+.||+.||..-++. +|+| ++.|++.
T Consensus 2 ~Vi~v~~d~df~~~ls~-ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA-AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhc-cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 68888877 68888873 346899999999999999999999999999999875444 3445 3456643
Q ss_pred h----hceeecCCccccChHHHHH-HHHH
Q 046260 120 L----TYFQYNGFIGCDLLNFLLV-SLLF 143 (281)
Q Consensus 120 s----rY~~Y~G~~~~RtlesLv~-~~~~ 143 (281)
. |-.+|+|..+ .-||+.++ |...
T Consensus 81 f~ng~kid~~qGAd~-~gLe~kv~~~~st 108 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADA-SGLEEKVAKYAST 108 (288)
T ss_pred EecCeEeeeecCCCH-HHHHHHHHHHhcc
Confidence 1 2278888711 22666665 5544
No 46
>PTZ00051 thioredoxin; Provisional
Probab=98.98 E-value=6.8e-10 Score=84.44 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=51.5
Q ss_pred CCeeech-hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 53 PPFEVDG-EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 53 pV~~vd~-~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
||.+++. ++++++++ .++.++|.|||+||+.|+.+.|.|+++++.++++..+.++.. ..+.+..+|
T Consensus 1 ~v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-~~~~~~~~~ 67 (98)
T PTZ00051 1 MVHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-ELSEVAEKE 67 (98)
T ss_pred CeEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-chHHHHHHC
Confidence 3566664 57888886 478999999999999999999999999999998766666643 344555544
No 47
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.94 E-value=2.8e-09 Score=79.80 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=56.4
Q ss_pred echhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEeeccCCcccchhc-------------
Q 046260 57 VDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIEQSSALPRYLLTY------------- 122 (281)
Q Consensus 57 vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie~s~~~psi~srY------------- 122 (281)
++++++++.++. .++.++|.||++||+.|+.+.|.|+++++.+++ +..+.++ ++..+.+..+|
T Consensus 1 i~~~~~~~~~~~--~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIAS--SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLN-VDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhh--cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEE-CCCCHHHHHHcCCCcCCEEEEEeC
Confidence 467788888862 356999999999999999999999999988874 5445554 33455555444
Q ss_pred ----eeecCCccccChHHHHH
Q 046260 123 ----FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 ----~~Y~G~~~~RtlesLv~ 139 (281)
..|.|. ++.+.|.+
T Consensus 78 g~~~~~~~g~---~~~~~l~~ 95 (101)
T TIGR01068 78 GKEVDRSVGA---LPKAALKQ 95 (101)
T ss_pred CcEeeeecCC---CCHHHHHH
Confidence 345566 77777766
No 48
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.93 E-value=2.5e-09 Score=100.53 Aligned_cols=93 Identities=19% Similarity=0.370 Sum_probs=68.4
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc-ce---eEeec---------cCCccc
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME-HY---TIEQS---------SALPRY 118 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~-~v---aie~s---------~~~psi 118 (281)
.+|..++++++++++.. +++.++|.|||+||++|+.+.|.|+++++.+.+.. .+ .++.. ...|++
T Consensus 346 ~~v~~l~~~~f~~~v~~--~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~ 423 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLD--ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTI 423 (462)
T ss_pred CccEEeeCcCHHHHhcc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEE
Confidence 46889999999998863 47899999999999999999999999999998632 22 23321 123443
Q ss_pred ch-----h--ceeecCCccccChHHHHHHHHHhCCCCc
Q 046260 119 LL-----T--YFQYNGFIGCDLLNFLLVSLLFAGFDPV 149 (281)
Q Consensus 119 ~s-----r--Y~~Y~G~~~~RtlesLv~~~~~TGi~p~ 149 (281)
.- + -.+|.|. ++.++|.++.+..+-.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~---~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 424 KFVPAGKKSEPVPYDGD---RTLEDFSKFIAKHATFPL 458 (462)
T ss_pred EEEeCCCCcCceEecCc---CCHHHHHHHHHhcCCCCC
Confidence 30 1 1579999 999999996555554443
No 49
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.92 E-value=1.2e-09 Score=93.44 Aligned_cols=64 Identities=11% Similarity=0.255 Sum_probs=51.0
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+.+.+++++... .++.|+|.|||+||+.|+++.|+++++|+.+++...+...+.+..|.+..+|
T Consensus 10 s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y 73 (142)
T PLN00410 10 SGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY 73 (142)
T ss_pred CHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence 356888888632 4789999999999999999999999999999986554555566666666666
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.92 E-value=5.1e-09 Score=87.73 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=55.8
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEeec-cCCcccchhc---------------
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIEQS-SALPRYLLTY--------------- 122 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie~s-~~~psi~srY--------------- 122 (281)
..+++++. +++.++|.|||+||+.|+.+.|.++++++.|.+ +..+.++-. ...+.+..+|
T Consensus 11 ~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 35677665 578999999999999999999999999999864 333333211 1123333444
Q ss_pred ---eeecCCccccChHHHHH-HHHHhCCCCcc
Q 046260 123 ---FQYNGFIGCDLLNFLLV-SLLFAGFDPVE 150 (281)
Q Consensus 123 ---~~Y~G~~~~RtlesLv~-~~~~TGi~p~~ 150 (281)
.++.|. .+.+.|.+ +.+...-.|.+
T Consensus 88 ~~v~~~~G~---~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 88 NEEGQSIGL---QPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CEEEEEeCC---CCHHHHHHHHHHHHcCCCCC
Confidence 345566 67777776 55554433444
No 51
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.9e-09 Score=92.34 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=55.9
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+..++.+.+++.+. +++..|+|+|||+||+.|+.|.|+-|+++..|.+.=.++..+.+.++.+..+|
T Consensus 45 ~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y 111 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDY 111 (150)
T ss_pred ccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhc
Confidence 55677777777665 47899999999999999999999999999999765556666667789999888
No 52
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.90 E-value=2.2e-09 Score=88.57 Aligned_cols=67 Identities=18% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCC--ChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASW--CPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~W--CpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
..-++|+.||++.+. .+..++|.|||+| ||.|+.++|+++++++.|++.-.++..+.+..|.+..+|
T Consensus 11 ~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f 79 (111)
T cd02965 11 GWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARF 79 (111)
T ss_pred CCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHc
Confidence 455899999999885 5678889999997 999999999999999999975444444455677888877
No 53
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.88 E-value=2.1e-09 Score=81.41 Aligned_cols=62 Identities=24% Similarity=0.457 Sum_probs=48.8
Q ss_pred hhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhcc-CCCCcceeEeeccCCcccchhc
Q 046260 59 GEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSM-FPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 59 ~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~-FP~i~~vaie~s~~~psi~srY 122 (281)
.+++++++... .++.++|.|||+||+.|+++.|.+++++.. ++++..+.++.. ..+.+..+|
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~-~~~~~~~~~ 64 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE-ELPEISEKF 64 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc-cCHHHHHhc
Confidence 56788888743 268999999999999999999999999998 666666666643 456565555
No 54
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.83 E-value=1.5e-09 Score=95.98 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=51.7
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS 112 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s 112 (281)
..|.+++++++.+.+....++.+|+|.|||+||+.|+.|.|++++||..||+++++.|+..
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad 142 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST 142 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH
Confidence 4688999998887765333356999999999999999999999999999999888777654
No 55
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.80 E-value=1.6e-09 Score=99.89 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc-ceeEeeccCCcccchhc---------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME-HYTIEQSSALPRYLLTY--------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~-~vaie~s~~~psi~srY--------- 122 (281)
.++.+|++|+..+|. ++++ ++|||||||-|+.+.|+|+..|+-=.+++ .++..+.+..|.++-||
T Consensus 25 ~~~~~~eenw~~~l~----gewm-i~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT----GEWM-IEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred eeEEecccchhhhhc----hHHH-HHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence 689999999999996 7777 79999999999999999999998755554 35555555555555444
Q ss_pred -------eeecCCccccChHHHHH---HHHHhCCCCccc
Q 046260 123 -------FQYNGFIGCDLLNFLLV---SLLFAGFDPVEY 151 (281)
Q Consensus 123 -------~~Y~G~~~~RtlesLv~---~~~~TGi~p~~~ 151 (281)
++|.|+ ||.+++++ +.++.-|+|++.
T Consensus 100 HvkDGeFrrysga---Rdk~dfisf~~~r~w~~i~p~p~ 135 (248)
T KOG0913|consen 100 HVKDGEFRRYSGA---RDKNDFISFEEHREWQSIDPVPE 135 (248)
T ss_pred EeeccccccccCc---ccchhHHHHHHhhhhhccCCcch
Confidence 999999 99999998 566677888654
No 56
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.78 E-value=5.9e-09 Score=80.86 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=37.6
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccH---HHHhccCC-CCcceeEe
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTF---EALSSMFP-QMEHYTIE 110 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiF---e~LA~~FP-~i~~vaie 110 (281)
+.+++++. .++.++|.|||+||++|+++.|.+ ++++..+. ++..+.++
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd 53 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRAD 53 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEe
Confidence 46777775 578999999999999999999998 67888776 33333444
No 57
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.77 E-value=8.1e-09 Score=83.15 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=37.9
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+...++|.|||+|||+|+.++|++++++..++.+....++.. ..|.+..+|
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~ 71 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKY 71 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHc
Confidence 355677889999999999999999999998876655555432 344444444
No 58
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-08 Score=95.44 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=73.5
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-----------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY----------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY----------- 122 (281)
+.++++.||++.+....+...|+|+||||||+.|+.|.|+-|+++..+..-=.++..+|+.+|.|.-+|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 899999999999886656679999999999999999999999999999866568888899999988776
Q ss_pred ------eeecCCccccChHHHHHHHHHh
Q 046260 123 ------FQYNGFIGCDLLNFLLVSLLFA 144 (281)
Q Consensus 123 ------~~Y~G~~~~RtlesLv~~~~~T 144 (281)
-.|.|. -..+.+.++.+.-
T Consensus 105 ~dGqpVdgF~G~---qPesqlr~~ld~~ 129 (304)
T COG3118 105 KDGQPVDGFQGA---QPESQLRQFLDKV 129 (304)
T ss_pred eCCcCccccCCC---CcHHHHHHHHHHh
Confidence 567887 6666666644443
No 59
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.70 E-value=1.6e-08 Score=84.14 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+.+++.+... .++.++|.|+|+|||.|+.+.|+++++|..|++.-.+...+.+..|.+...|
T Consensus 3 ~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y 64 (114)
T cd02986 3 KEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF 64 (114)
T ss_pred HHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc
Confidence 3566666532 5789999999999999999999999999999973233333455566666665
No 60
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.70 E-value=3.5e-08 Score=76.11 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=52.4
Q ss_pred hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEeeccCCcccchhc-----------------
Q 046260 61 FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIEQSSALPRYLLTY----------------- 122 (281)
Q Consensus 61 ~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie~s~~~psi~srY----------------- 122 (281)
.|++.+. +.++.++|.|||+||+.|+.+.|.++++++.+++ +....++ .+.++.+..+|
T Consensus 4 ~~~~~~~--~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id-~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 4 ALRKLYH--ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEID-IDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred hHHHHHH--hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEE-CCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 3566665 3578999999999999999999999999998874 3334444 34466655554
Q ss_pred eeecCCccccChHHHHH
Q 046260 123 FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 ~~Y~G~~~~RtlesLv~ 139 (281)
.++.|. ++.+.|.+
T Consensus 81 ~~~~g~---~~~~~~~~ 94 (97)
T cd02949 81 KEISGV---KMKSEYRE 94 (97)
T ss_pred EEEeCC---ccHHHHHH
Confidence 555666 66666654
No 61
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.4e-08 Score=94.18 Aligned_cols=88 Identities=19% Similarity=0.352 Sum_probs=63.5
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc--cee-EeeccCCcccchhc-------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME--HYT-IEQSSALPRYLLTY------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~--~va-ie~s~~~psi~srY------- 122 (281)
.+.+++.+++++.... .++..+|.||||||+|||+++|.|++++..+.... +++ +++. .++++.+++
T Consensus 145 ~v~~l~~~~~~~~~~~--~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKD--SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-VHKSLASRLEVRGYPT 221 (383)
T ss_pred ceEEccccchhhhhhc--cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-hHHHHhhhhcccCCce
Confidence 4888889999887653 46788899999999999999999999999875422 233 3322 333333322
Q ss_pred -----------eeecCCccccChHHHHH-HHHHhCC
Q 046260 123 -----------FQYNGFIGCDLLNFLLV-SLLFAGF 146 (281)
Q Consensus 123 -----------~~Y~G~~~~RtlesLv~-~~~~TGi 146 (281)
..|.|. |+.++++. ..+..+.
T Consensus 222 ~~~f~~~~~~~~~~~~~---R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGL---RDSDSIVSFVEKKERR 254 (383)
T ss_pred EEEecCCCccccccccc---ccHHHHHHHHHhhcCC
Confidence 567777 99999999 5544544
No 62
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.5e-08 Score=94.07 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=59.9
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc---------------
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY--------------- 122 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY--------------- 122 (281)
+..+.+.++. .+...+|+||||||++|+.+.|.|+++++.+..+-.++-.+++.++.+..+|
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCC
Confidence 4445555554 4678899999999999999999999999988763334444455555555444
Q ss_pred --eeecCCccccChHHHHHHHHH
Q 046260 123 --FQYNGFIGCDLLNFLLVSLLF 143 (281)
Q Consensus 123 --~~Y~G~~~~RtlesLv~~~~~ 143 (281)
..|+|. ++.+++.++...
T Consensus 113 ~~~~~~~~---~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 113 KPIDYSGP---RNAESLAEFLIK 132 (383)
T ss_pred ceeeccCc---ccHHHHHHHHHH
Confidence 889998 999999995544
No 63
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.61 E-value=9.5e-08 Score=68.74 Aligned_cols=57 Identities=18% Similarity=0.437 Sum_probs=43.0
Q ss_pred hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchh
Q 046260 61 FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLT 121 (281)
Q Consensus 61 ~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~sr 121 (281)
+++++++ .++.++|.||++||+.|+.+.|.++++++..+++..+.++.. ..+.+..+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 58 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD-ENPELAEE 58 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC-CChhHHHh
Confidence 4667776 347899999999999999999999999998777766666533 33444433
No 64
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=2.1e-08 Score=101.81 Aligned_cols=49 Identities=29% Similarity=0.548 Sum_probs=44.1
Q ss_pred CCCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhcc
Q 046260 50 SPNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSM 100 (281)
Q Consensus 50 ~~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~ 100 (281)
..+||.+||.+++..++... .+..+|+|||+||+||++++|+|.++|..
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~--~~~~lVEFy~swCGhCr~FAPtfk~~A~d 85 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGS--RKAKLVEFYNSWCGHCRAFAPTFKKFAKD 85 (606)
T ss_pred CCCCeEEeehhhhHHHhccc--chhHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence 34899999999999999854 35788999999999999999999999986
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.52 E-value=8.4e-08 Score=78.09 Aligned_cols=40 Identities=18% Similarity=0.461 Sum_probs=32.4
Q ss_pred HHHHhhc-cCCCcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 62 LDRALTS-KQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 62 ld~iL~~-~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++++|.. ..+++.++|.|||+||++|+.+.|.+++.+...
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~ 48 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEIS 48 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHH
Confidence 4445442 235789999999999999999999999988764
No 66
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.50 E-value=1.6e-07 Score=77.20 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=38.8
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
...++.+.+++.++ +++.++|.|||+|||+|+++.|+++++++..
T Consensus 8 ~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~ 52 (122)
T TIGR01295 8 LEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT 52 (122)
T ss_pred ceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc
Confidence 45677778888886 5788899999999999999999999999984
No 67
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.49 E-value=2.2e-07 Score=68.29 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=43.2
Q ss_pred EEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEeeccCCcccchhc-------------eeecCCccccChHHHHH
Q 046260 75 TSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIEQSSALPRYLLTY-------------FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 75 vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie~s~~~psi~srY-------------~~Y~G~~~~RtlesLv~ 139 (281)
.++.|||+|||+|+.+.|.+++++..++. +..+.++ .+..+.+..+| .++.|. .+.+.|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~vPt~~~~g~~~~~G~---~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYIN-VMENPQKAMEYGIMAVPAIVINGDVEFIGA---PTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEe-CccCHHHHHHcCCccCCEEEECCEEEEecC---CCHHHHHH
Confidence 35799999999999999999999988753 3333443 33445554444 466676 77777766
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.47 E-value=2.2e-07 Score=77.14 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.5
Q ss_pred chhhHHHHhhccCCCcEEEEEEeC-------CCChhhhcccccHHHHhccCC-CCcceeEee
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYA-------SWCPFSRDVRPTFEALSSMFP-QMEHYTIEQ 111 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA-------~WCpfSk~L~PiFe~LA~~FP-~i~~vaie~ 111 (281)
+.+++++.+.. ++++.++|.||| +|||.|+.+.|++++++..++ ++..+.|+.
T Consensus 8 ~~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdv 68 (119)
T cd02952 8 GYEEFLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDV 68 (119)
T ss_pred CHHHHHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEc
Confidence 34567777763 246899999999 999999999999999999999 565555553
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.46 E-value=3.4e-07 Score=80.86 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred CCcEEEEEEeC---CCChhhhcccccHHHHhccCCCCcceeEeecc--CCcccchhc------------------eeecC
Q 046260 71 RNAYTSVLFYA---SWCPFSRDVRPTFEALSSMFPQMEHYTIEQSS--ALPRYLLTY------------------FQYNG 127 (281)
Q Consensus 71 ~~~~vlVlFYA---~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~--~~psi~srY------------------~~Y~G 127 (281)
++...++.|++ +|||+|++++|+++++++.++++. +.+.+.+ ..+.+..+| .+|.|
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~-i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLK-LEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCce-EEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 36778889999 999999999999999999998654 3222222 344444444 36888
Q ss_pred CccccChHHHHH-HHHHhCCC
Q 046260 128 FIGCDLLNFLLV-SLLFAGFD 147 (281)
Q Consensus 128 ~~~~RtlesLv~-~~~~TGi~ 147 (281)
. .+.+.|.+ +.+..++.
T Consensus 97 ~---~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 97 I---PAGYEFAALIEDIVRVS 114 (215)
T ss_pred c---CCHHHHHHHHHHHHHhc
Confidence 7 66666655 44444443
No 70
>PHA02125 thioredoxin-like protein
Probab=98.28 E-value=5.2e-07 Score=67.51 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=21.8
Q ss_pred EEEEeCCCChhhhcccccHHHHhc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
+|.|||+||++|++++|++++++-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~ 25 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY 25 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh
Confidence 689999999999999999998753
No 71
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.27 E-value=6e-07 Score=64.57 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=34.9
Q ss_pred EEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 75 TSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 75 vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
.++.||++|||+|++++|.+++++..++++....++ .+.++.+..+|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id-~~~~~~l~~~~ 48 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMID-AAEFPDLADEY 48 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEE-cccCHhHHHHc
Confidence 367999999999999999999999988877555554 22344444443
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.25 E-value=1.9e-06 Score=76.18 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=48.7
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc--------------eeecCCccccChHHH
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY--------------FQYNGFIGCDLLNFL 137 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY--------------~~Y~G~~~~RtlesL 137 (281)
+..+++.|||+|||+|+.+.|.+++++...|++.+..+|.. ..+.+..+| ++|.|. .+.+.|
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~-~~~~~~~~~~V~~vPtl~i~~~~~~~~G~---~~~~~l 208 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN-ENPDLAEKYGVMSVPKIVINKGVEEFVGA---YPEEQF 208 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC-CCHHHHHHhCCccCCEEEEecCCEEEECC---CCHHHH
Confidence 45566669999999999999999999999888766555533 455555554 347787 888887
Q ss_pred HHH
Q 046260 138 LVS 140 (281)
Q Consensus 138 v~~ 140 (281)
+++
T Consensus 209 ~~~ 211 (215)
T TIGR02187 209 LEY 211 (215)
T ss_pred HHH
Confidence 773
No 73
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.23 E-value=2.1e-06 Score=68.71 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=29.4
Q ss_pred hHHHHhhccCCC-cEEEEEEeCCCChhhhcccccHH---HHhccC
Q 046260 61 FLDRALTSKQRN-AYTSVLFYASWCPFSRDVRPTFE---ALSSMF 101 (281)
Q Consensus 61 ~ld~iL~~~~~~-~~vlVlFYA~WCpfSk~L~PiFe---~LA~~F 101 (281)
.+++++. .+ +.++|.|||+||++|+.+.|.+. ++...+
T Consensus 5 ~~~~a~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~ 46 (125)
T cd02951 5 DLAEAAA---DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYI 46 (125)
T ss_pred HHHHHHH---cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHH
Confidence 4555554 56 89999999999999999999885 444444
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.14 E-value=3e-06 Score=85.87 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=42.4
Q ss_pred CCeeec-hhhHHHHhhc-cCCCcEEEEEEeCCCChhhhcccccH---HHHhccCCCCcceeEe
Q 046260 53 PPFEVD-GEFLDRALTS-KQRNAYTSVLFYASWCPFSRDVRPTF---EALSSMFPQMEHYTIE 110 (281)
Q Consensus 53 pV~~vd-~~~ld~iL~~-~~~~~~vlVlFYA~WCpfSk~L~PiF---e~LA~~FP~i~~vaie 110 (281)
+..+++ .+++++++.. ..+++.++|+|||+||+.||.++|.. +++.+.+.+...+.+|
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vD 515 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQAD 515 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEE
Confidence 355664 4678888764 23468999999999999999999974 6677777665444444
No 75
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.08 E-value=2.3e-06 Score=73.47 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=32.0
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+++.+|+|||+|||.|++..|.++++++.+. ...++|.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs 87 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFS 87 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEE
Confidence 5678999999999999999999999999883 4455543
No 76
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.06 E-value=2.4e-06 Score=66.43 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=29.4
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCC
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
++.++|.|||+|||.|++..|.++++.+.+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~ 52 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD 52 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC
Confidence 78999999999999999999999999988753
No 77
>PTZ00062 glutaredoxin; Provisional
Probab=98.05 E-value=1e-05 Score=72.87 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=55.9
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec---cCCcccch-h----ceeecCCc
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS---SALPRYLL-T----YFQYNGFI 129 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s---~~~psi~s-r----Y~~Y~G~~ 129 (281)
+.+.+++++.. ....+++.|+|+|||-|+.+.|++++|++.||++..+.|+.. .+-|++.. + -.++.|.
T Consensus 5 ~~ee~~~~i~~--~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~r~~G~- 81 (204)
T PTZ00062 5 KKEEKDKLIES--NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLINSLEGC- 81 (204)
T ss_pred CHHHHHHHHhc--CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEeeeeCC-
Confidence 34566777652 125678899999999999999999999999999988887643 34465431 1 1455554
Q ss_pred cccChHHHHH-HHHHhC
Q 046260 130 GCDLLNFLLV-SLLFAG 145 (281)
Q Consensus 130 ~~RtlesLv~-~~~~TG 145 (281)
+...|.+ +.++.+
T Consensus 82 ---~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 82 ---NTSTLVSFIRGWAQ 95 (204)
T ss_pred ---CHHHHHHHHHHHcC
Confidence 3555555 444444
No 78
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.03 E-value=1e-05 Score=75.08 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeE
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTI 109 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vai 109 (281)
++++++|.|||+|||.|+.+.|+++++++.|. +..+.|
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~V 202 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPV 202 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEE
Confidence 47899999999999999999999999999985 334333
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.99 E-value=2.6e-06 Score=64.22 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=25.4
Q ss_pred EEEeCCCChhhhcccccHHHHhccCCC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
|.|||+|||.|+.++|.++++++.++.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~ 29 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI 29 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999998863
No 80
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.90 E-value=1.6e-05 Score=62.24 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=41.3
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
++.-+..|+++||++|+.+.+.+++++..+|++....++ .+.++.+..+|
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd-~~~~~e~a~~~ 61 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMID-GALFQDEVEER 61 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEE-hHhCHHHHHHc
Confidence 678889999999999999999999999999988655555 33466666666
No 81
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.89 E-value=1e-05 Score=64.47 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
++++++|.|||+|||.|+...|.++++++.+. +..+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~ 62 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGIN 62 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEE
Confidence 37899999999999999999999999998874 5555554
No 82
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.88 E-value=1.2e-05 Score=59.84 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=33.9
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccC--CCCcceeEe
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMF--PQMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F--P~i~~vaie 110 (281)
+++++|.||++||+.|++..|.+.++.+.+ +++..++|.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~ 59 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVN 59 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEE
Confidence 689999999999999999999999999999 555555554
No 83
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.87 E-value=1.6e-05 Score=57.43 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=33.5
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEee
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIEQ 111 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie~ 111 (281)
+..++|.||++|||.|+.+.|.+++++..++. +..+.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~ 72 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNV 72 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEEC
Confidence 67889999999999999999999999999985 43444443
No 84
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.87 E-value=3.9e-05 Score=66.42 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=31.7
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
++++++|+|||+|||.|++..|.++++.+. ++..+.|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~ 104 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMN 104 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEE
Confidence 478999999999999999999999999864 34455554
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.86 E-value=1.2e-05 Score=64.55 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=28.9
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
++++++|.|||+||+.|+++.|.++++.+.+.
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~ 48 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK 48 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHH
Confidence 37899999999999999999999999887764
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.85 E-value=2.9e-05 Score=64.55 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=33.7
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCC--CcceeEe
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vaie 110 (281)
++.++|.|||+|||.|+...|.++++.+.|++ +..++|.
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~ 101 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVN 101 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 67899999999999999999999999999975 3445554
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.85 E-value=9e-06 Score=61.57 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.8
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
|++++|.|+|+||+.|+...|...++.+.++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~ 31 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK 31 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.84 E-value=1.3e-05 Score=65.01 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
+++.++|.|+|+||+.|+...|.++++.+.+.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~ 48 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE 48 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999887654
No 89
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.77 E-value=1.4e-05 Score=61.09 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.4
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCC-CcceeEe
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ-MEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~-i~~vaie 110 (281)
+..++|.||++||+.|+.++|.++++|+.|.. +..+.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd 51 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD 51 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 56899999999999999999999999999964 3333343
No 90
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.76 E-value=2.3e-05 Score=65.24 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.7
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccc-cHH
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRP-TFE 95 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~P-iFe 95 (281)
+++.++++-. .++.++|.|||+||+.|+.|.+ +|.
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~ 39 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFE 39 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccC
Confidence 4456666665 5889999999999999999987 443
No 91
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.75 E-value=7.1e-05 Score=60.13 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=44.2
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccCCCCc--ceeEeeccCCcccchhceeecCCccccChHHHHHHHHHhCCC
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME--HYTIEQSSALPRYLLTYFQYNGFIGCDLLNFLLVSLLFAGFD 147 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~--~vaie~s~~~psi~srY~~Y~G~~~~RtlesLv~~~~~TGi~ 147 (281)
++.++|.|||+|||.|++..|.++++.+.|.+.+ .++|... ++... ++.+.+.++.+..|+.
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~-----------~~~~~---~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSP-----------EFAFE---RDLANVKSAVLRYGIT 86 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccC-----------ccccc---cCHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999998632 3333210 11223 5666666666666664
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.74 E-value=1.9e-05 Score=62.08 Aligned_cols=44 Identities=32% Similarity=0.596 Sum_probs=34.2
Q ss_pred eeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 55 FEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 55 ~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
..++|+.+..... +++.++|.|||+||+.|+.+.|.++++.+.+
T Consensus 6 ~~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 6 TTLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred ecCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 3455554444332 3589999999999999999999999999884
No 93
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.71 E-value=3.1e-05 Score=66.05 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+++.++|.|||+|||.|++..|.++++.+. ++..+.+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~ 99 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVD 99 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEE
Confidence 478999999999999999999999999874 34455554
No 94
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00017 Score=67.02 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=55.7
Q ss_pred CCCCeee-chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCc-ceeEeeccCCcccchhc
Q 046260 51 PNPPFEV-DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQME-HYTIEQSSALPRYLLTY 122 (281)
Q Consensus 51 ~~pV~~v-d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~-~vaie~s~~~psi~srY 122 (281)
|+-+... +++.+|+.|+ .+++++-+|.|||-|-|-|++.+|+|-+|+-.|-... .+...+.-..|....||
T Consensus 123 pe~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf 195 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF 195 (265)
T ss_pred chheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe
Confidence 4557777 7788888887 4567899999999999999999999999999986432 24444444577777777
No 95
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.55 E-value=0.00012 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.738 Sum_probs=21.6
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++.|+++|||+|+++++.++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC
Confidence 37899999999999999999998
No 96
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.52 E-value=4.7e-05 Score=65.28 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
+++.++|+|+|+|||.|++..|..+++.+.+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~ 55 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLT 55 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999876543
No 97
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.50 E-value=6.4e-05 Score=66.96 Aligned_cols=36 Identities=19% Similarity=0.602 Sum_probs=30.1
Q ss_pred EEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 74 YTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 74 ~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+-+|+|||+|||+|++..|..+++++.|. +..++|.
T Consensus 71 ~~lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs 106 (181)
T PRK13728 71 WKVVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYT 106 (181)
T ss_pred ceEEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEE
Confidence 33889999999999999999999999984 5555553
No 98
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.49 E-value=7.7e-05 Score=56.32 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.3
Q ss_pred CCCcEEEEEEeCCCChhhhcccccH
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTF 94 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiF 94 (281)
+.++.++|.|||+||+.|+.|.-.+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHH
Confidence 3589999999999999999998766
No 99
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.43 E-value=9e-05 Score=75.21 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
++++|+|+|||+|||.|++..|.++++++.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k 86 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAK 86 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999876
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.34 E-value=0.00019 Score=62.55 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+++.++|.|||+|||.|+...|.++++.+.. +...+.|.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is 111 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMIS 111 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEe
Confidence 4789999999999999999999999988654 34445554
No 101
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.31 E-value=0.00015 Score=56.29 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCCcEEEEEEeCCCChhhhcccccHHHHh
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiFe~LA 98 (281)
+.++.++|.|++||||+|+++.+...+..
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~ 31 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDN 31 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999988643
No 102
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.27 E-value=0.00021 Score=59.57 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
+++.++|+|+|+||| |+.-.|.++++.+.|.+.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~ 53 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR 53 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC
Confidence 378999999999999 999999999999999653
No 103
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.23 E-value=0.00023 Score=77.19 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
++++++|+|||+||+.|++..|.++++.+.|++.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~ 452 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ 452 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC
Confidence 3889999999999999999999999999999864
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.18 E-value=0.00023 Score=57.84 Aligned_cols=40 Identities=25% Similarity=0.524 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCC-CChhhhcccccHHHHhccCCCC--cceeEe
Q 046260 71 RNAYTSVLFYAS-WCPFSRDVRPTFEALSSMFPQM--EHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~-WCpfSk~L~PiFe~LA~~FP~i--~~vaie 110 (281)
+++.++|.|||+ |||.|+.-.|.++++.+.|.+. ..+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 378999999999 9999999999999999886543 344543
No 105
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.08 E-value=0.00024 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.625 Sum_probs=23.0
Q ss_pred EEEEeCCCChhhhcccccHHHHhccC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++.|+|+|||+|+++++.+++++-.|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~ 27 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY 27 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce
Confidence 57999999999999999999887554
No 106
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.03 E-value=0.00045 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
+++.++|+|+|+|||.|+.-.|..+++.+.|.+.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~ 71 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL 71 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999753
No 107
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.03 E-value=0.00053 Score=58.22 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=26.5
Q ss_pred hHHHHhhc-cCCCcEEEEEEeCCCChhhhcccccH
Q 046260 61 FLDRALTS-KQRNAYTSVLFYASWCPFSRDVRPTF 94 (281)
Q Consensus 61 ~ld~iL~~-~~~~~~vlVlFYA~WCpfSk~L~PiF 94 (281)
.++++|.. .+.++.++|.|||+||+.|+.|.-.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 45555553 24679999999999999999998753
No 108
>PLN02412 probable glutathione peroxidase
Probab=97.02 E-value=0.00044 Score=59.17 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
+++.++|+|+|+|||.|++-.|.++++.+.|.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~ 61 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ 61 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999864
No 109
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.00 E-value=0.00059 Score=55.42 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=34.8
Q ss_pred CcEEEEEEeCCC-ChhhhcccccHHHHhccCCCCcceeEe
Q 046260 72 NAYTSVLFYASW-CPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~W-CpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
++.+++.|||.| ||.|+.-.|.++++.+.|+++..++|.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is 65 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTIS 65 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 679999999999 699999999999999999877667764
No 110
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.94 E-value=0.00076 Score=43.47 Aligned_cols=35 Identities=34% Similarity=0.839 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
++.||++||++|+++.+.++++....+++....++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~ 35 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVD 35 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEE
Confidence 47899999999999999999995445555444444
No 111
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.91 E-value=0.00062 Score=56.68 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=33.0
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC--cceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM--EHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i--~~vaie 110 (281)
+++.++|.|.|+|||.|+.-.|..+++.+.|.+. ..++|.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEe
Confidence 3678999999999999999999999999998743 334443
No 112
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.90 E-value=0.00058 Score=53.33 Aligned_cols=39 Identities=21% Similarity=0.602 Sum_probs=33.5
Q ss_pred CcEEEEEEeCC-CChhhhcccccHHHHhccCCC--CcceeEe
Q 046260 72 NAYTSVLFYAS-WCPFSRDVRPTFEALSSMFPQ--MEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~-WCpfSk~L~PiFe~LA~~FP~--i~~vaie 110 (281)
+++++|.||+. |||+|+...|.++++...|+. +..++|.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 68999999999 999999999999999999884 3445554
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.89 E-value=0.0007 Score=57.07 Aligned_cols=39 Identities=15% Similarity=0.415 Sum_probs=33.3
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCC--CcceeE
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
+++.++|.||++|||.|+...|.++++...|++ +..++|
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~i 64 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAI 64 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 368999999999999999999999999999984 344555
No 114
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.79 E-value=0.00093 Score=61.52 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC--cceeEe
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM--EHYTIE 110 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i--~~vaie 110 (281)
+++.++|+|+|+|||.|+...|.++++.+.|.+. ..++|.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3689999999999999999999999999999753 334443
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.78 E-value=0.00061 Score=47.97 Aligned_cols=22 Identities=14% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEeCCCChhhhcccccHHHH
Q 046260 76 SVLFYASWCPFSRDVRPTFEAL 97 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~L 97 (281)
+..||++|||+|+++++.+++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~ 23 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK 23 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC
Confidence 4689999999999999999874
No 116
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.75 E-value=0.0012 Score=56.40 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=33.7
Q ss_pred CcEEEEEEeCCC-ChhhhcccccHHHHhccCCCCcceeEe
Q 046260 72 NAYTSVLFYASW-CPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFYA~W-CpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
+++++|+|||+| ||.|+.-.|.|+++.+.|.+...++|.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs 83 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCIS 83 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 679999999999 999999999999999998655555553
No 117
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.75 E-value=0.00093 Score=53.66 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=29.8
Q ss_pred CcEEEEEEeCCCChh-hhcccccHHHHhccCCC
Q 046260 72 NAYTSVLFYASWCPF-SRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 72 ~~~vlVlFYA~WCpf-Sk~L~PiFe~LA~~FP~ 103 (281)
+++++|.|+++||+. |++..|.++++...|.+
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 789999999999997 99999999999998865
No 118
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.62 E-value=0.0038 Score=45.92 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=23.8
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
++.|+++|||+|+++++.++++...|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~ 28 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPA 28 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcE
Confidence 478999999999999999999988543
No 119
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.52 E-value=0.0016 Score=52.23 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=29.7
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCC--CCcceeEe
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFP--QMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP--~i~~vaie 110 (281)
++.++|.|| |+|||.|+.-.|.++++.+.|. ++..++|.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~ 64 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVG 64 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 345556665 9999999999999999999885 34445554
No 120
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.43 E-value=0.0023 Score=57.06 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhcc-CCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSM-FPQ 103 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~-FP~ 103 (281)
+++..+|+|+|+||+.|+.=+|..++++.. ||.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCc
Confidence 489999999999999999999999999864 764
No 121
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.43 E-value=0.0015 Score=67.06 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=29.7
Q ss_pred eechh-hHHHHhhccCCCcEEEEEEeCCCChhhhccccc
Q 046260 56 EVDGE-FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPT 93 (281)
Q Consensus 56 ~vd~~-~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~Pi 93 (281)
.+... .+|+++... +++.|+|+||||||--||.+++.
T Consensus 458 ~~s~~~~L~~~la~~-~~~pVmlDfyAdWCvtCK~~e~~ 495 (569)
T COG4232 458 PISPLAELDQALAEA-KAKPVMLDFYADWCVTCKENEKY 495 (569)
T ss_pred ccCCHHHHHHHHHhC-CCCcEEEeeehhHHHHhHhhhhh
Confidence 34444 889999843 45799999999999999999875
No 122
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0084 Score=51.19 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=41.1
Q ss_pred hhHHHHhhccCCCcEEEEEEeC--------CCChhhhcccccHHHHhccCCCCcceeEee
Q 046260 60 EFLDRALTSKQRNAYTSVLFYA--------SWCPFSRDVRPTFEALSSMFPQMEHYTIEQ 111 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA--------~WCpfSk~L~PiFe~LA~~FP~i~~vaie~ 111 (281)
+.+++.+....+++-++|+|+| ||||-|.+..|++++.=+.+|..-|+....
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~ 72 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVY 72 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEE
Confidence 4678888766556669999999 599999999999999999888655554433
No 123
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.16 E-value=0.0034 Score=50.91 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=30.9
Q ss_pred cEEEEEEe-CCCChhhhcccccHHHHhccCCC--CcceeEe
Q 046260 73 AYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQ--MEHYTIE 110 (281)
Q Consensus 73 ~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~--i~~vaie 110 (281)
+.++|.|| |+|||.|.+-.|.++++.+.|.+ +..++|.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 67888888 99999999999999999999864 3344543
No 124
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.12 E-value=0.0056 Score=48.98 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=30.5
Q ss_pred CCCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
...+.+++.|+-++||||+++.|...++...++++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~ 37 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDV 37 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCc
Confidence 34689999999999999999999999988777764
No 125
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.95 E-value=0.018 Score=57.33 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=66.9
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-----------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY----------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY----------- 122 (281)
-..++++..+++-.. ..+.-+-.|+.+.||+|......+++++...|++.+-.||.. .+|.+..+|
T Consensus 100 ~~~l~~~~~~~i~~~--~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~ 176 (517)
T PRK15317 100 PPKLDQEVIEQIKAL--DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA-LFQDEVEARNIMAVPTVFLN 176 (517)
T ss_pred CCCCCHHHHHHHHhc--CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch-hCHhHHHhcCCcccCEEEEC
Confidence 345666666665442 245667899999999999999999999999999987777654 688888887
Q ss_pred --eeecCCccccChHHHHH-HHHHhC
Q 046260 123 --FQYNGFIGCDLLNFLLV-SLLFAG 145 (281)
Q Consensus 123 --~~Y~G~~~~RtlesLv~-~~~~TG 145 (281)
..|.|. .+.+.|++ +.+.++
T Consensus 177 ~~~~~~g~---~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 177 GEEFGQGR---MTLEEILAKLDTGAA 199 (517)
T ss_pred CcEEEecC---CCHHHHHHHHhcccc
Confidence 668888 88999988 665555
No 126
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.75 E-value=0.0074 Score=52.53 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=31.6
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCCC--CcceeE
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
++.++|.|| |+|||.|+.-.|.++++...|.+ +..++|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~V 71 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSV 71 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 679999999 99999999999999999888853 334444
No 127
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.74 E-value=0.007 Score=52.42 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=30.0
Q ss_pred Cc-EEEEEEeCCCChhhhcccccHHHHhccCCCC--cceeEe
Q 046260 72 NA-YTSVLFYASWCPFSRDVRPTFEALSSMFPQM--EHYTIE 110 (281)
Q Consensus 72 ~~-~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i--~~vaie 110 (281)
++ .++|.|.|+|||.|+.-.|.++++.+.|.+. ..++|.
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 55 4455568999999999999999999998753 344553
No 128
>PHA03050 glutaredoxin; Provisional
Probab=95.69 E-value=0.0072 Score=49.20 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=45.9
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhceeecCCccccChHHHHH
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTYFQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY~~Y~G~~~~RtlesLv~ 139 (281)
+.+++.++ +++ ++.|..+|||||++.+=.++++.-..+....+.+++.. .+.+ +.+
T Consensus 4 ~~v~~~i~---~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~------------------~~~~-~~~ 59 (108)
T PHA03050 4 EFVQQRLA---NNK--VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFK------------------PENE-LRD 59 (108)
T ss_pred HHHHHHhc---cCC--EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCC------------------CCHH-HHH
Confidence 35566664 233 57999999999999999999987655433333333211 1112 223
Q ss_pred -HHHHhCCCCcccccccc
Q 046260 140 -SLLFAGFDPVEYFAEDE 156 (281)
Q Consensus 140 -~~~~TGi~p~~~~~v~~ 156 (281)
+.+.||...+|.+.++.
T Consensus 60 ~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 60 YFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHcCCCCcCEEEECC
Confidence 67777777777766653
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.69 E-value=0.0057 Score=52.02 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=29.7
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCCC
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
+++++|.|| +.|||.|..-.|.++++.+.|.+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~ 61 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK 61 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 689999999 99999999999999999999864
No 130
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.67 E-value=0.0071 Score=48.40 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=28.5
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCCC
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
++.++|.|+ +.|||.|....|.+.++.+.|.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~ 55 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA 55 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH
Confidence 678999999 59999999999999999988863
No 131
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.66 E-value=0.0098 Score=45.09 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCCCCcc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFPQMEH 106 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~ 106 (281)
++.|+.+|||+|++.+..++++...+..+..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~ 33 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDY 33 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcE
Confidence 5789999999999999999999976655543
No 132
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.54 E-value=0.0096 Score=52.70 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=28.8
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
+++.++|.|.|+||++|++ -|.+++|.+.|.+.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~ 56 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ 56 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC
Confidence 3789999999999999986 78999999998754
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.42 E-value=0.027 Score=49.69 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=30.7
Q ss_pred HHHHhhccCCCcEEEEEEeCCCChhhhccccc----HHHHhccCCCC
Q 046260 62 LDRALTSKQRNAYTSVLFYASWCPFSRDVRPT----FEALSSMFPQM 104 (281)
Q Consensus 62 ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~Pi----Fe~LA~~FP~i 104 (281)
..+.|. |+.+.+-|-|-|||.||.+-|+ |+++.+..+..
T Consensus 27 ~~~~l~----gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~f 69 (157)
T KOG2501|consen 27 ASEALQ----GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPF 69 (157)
T ss_pred HhHhhC----CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCce
Confidence 444564 7999999999999999998775 77777776644
No 134
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.34 E-value=0.013 Score=46.77 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=31.5
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCC--CCcceeEe
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFP--QMEHYTIE 110 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP--~i~~vaie 110 (281)
++.++|.|+ +.|||.|....|.++++.+.|. ++..++|.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is 63 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVS 63 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 778899999 7899999999999999998873 34445553
No 135
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.29 E-value=0.0094 Score=49.96 Aligned_cols=68 Identities=15% Similarity=0.320 Sum_probs=39.9
Q ss_pred echhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhceeecCC
Q 046260 57 VDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTYFQYNGF 128 (281)
Q Consensus 57 vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY~~Y~G~ 128 (281)
++++..+++-. ...+..++-|..+|||-|++.-|++.++++.-|++ .+.+-.-+.++.+..+|.. .|.
T Consensus 28 l~~~~~~~l~~--~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i-~~~~i~rd~~~el~~~~lt-~g~ 95 (129)
T PF14595_consen 28 LSEEQIEKLKS--IQKPYNILVITETWCGDCARNVPVLAKIAEANPNI-EVRIILRDENKELMDQYLT-NGG 95 (129)
T ss_dssp --HHHHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTE-EEEEE-HHHHHHHTTTTTT--SS
T ss_pred CCHHHHHHHHh--cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCC-eEEEEEecCChhHHHHHHh-CCC
Confidence 44444444333 23567888999999999999999999999999976 4444433445666666644 444
No 136
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.27 E-value=0.0093 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=21.3
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++.|+++|||+|+++++.+++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 47899999999999999999987
No 137
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.17 E-value=0.01 Score=41.67 Aligned_cols=23 Identities=9% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++.|+++|||+|+++++.+++..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~ 24 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG 24 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC
Confidence 47899999999999999988753
No 138
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.08 E-value=0.077 Score=49.79 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCCeeec-hhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccC----------Ccccch
Q 046260 52 NPPFEVD-GEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSA----------LPRYLL 120 (281)
Q Consensus 52 ~pV~~vd-~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~----------~psi~s 120 (281)
.-|.+++ ++.+.+++....++.+|+|-||-+-++-|+.|--++..||..||+++++.|..... .|+|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtl-- 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTL-- 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEE--
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEE--
Confidence 3477885 57777777755667899999999999999999999999999999999988866432 2333
Q ss_pred hceeecCCcc-------------ccChHHHHHHHHHhCCCCccccccc
Q 046260 121 TYFQYNGFIG-------------CDLLNFLLVSLLFAGFDPVEYFAED 155 (281)
Q Consensus 121 rY~~Y~G~~~-------------~RtlesLv~~~~~TGi~p~~~~~v~ 155 (281)
.-|+|+.- +-+.+.|-.+-...|+=|..++.+.
T Consensus 203 --lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k~~~~~ 248 (265)
T PF02114_consen 203 --LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEKDSRLL 248 (265)
T ss_dssp --EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS-------
T ss_pred --EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCcccchh
Confidence 33333320 3445565556667788777665444
No 139
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.99 E-value=0.023 Score=51.33 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=39.8
Q ss_pred echhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEe
Q 046260 57 VDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIE 110 (281)
Q Consensus 57 vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie 110 (281)
..++.-+++|... .+++.+|.||.+.||+|+.++|+...+++.| .+..+.|.
T Consensus 106 ~~~~~~~~~l~~l-a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs 157 (215)
T PF13728_consen 106 QREQKRDKALKQL-AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVS 157 (215)
T ss_pred HHHHHHHHHHHHH-hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEe
Confidence 3344555566543 4789999999999999999999999999998 34444443
No 140
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.84 E-value=0.017 Score=45.85 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=24.5
Q ss_pred hHHHHhhc-cCCCcEEEEEEeCCCChhhhcccc
Q 046260 61 FLDRALTS-KQRNAYTSVLFYASWCPFSRDVRP 92 (281)
Q Consensus 61 ~ld~iL~~-~~~~~~vlVlFYA~WCpfSk~L~P 92 (281)
+++++++. .+.++.++|.||++||+.|+.+.-
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~ 37 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNR 37 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHH
Confidence 34555543 245799999999999999999864
No 141
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.49 E-value=0.059 Score=44.46 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=30.1
Q ss_pred CcEEEEEEeCC-CChhhhcccccHHHHhccCCC--CcceeE
Q 046260 72 NAYTSVLFYAS-WCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 72 ~~~vlVlFYA~-WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
+++++|.|++. |||.|....|.++++.+.+.+ +..++|
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 67899999986 799999999999999888753 334444
No 142
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.87 E-value=0.051 Score=41.77 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCCCCc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFPQME 105 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP~i~ 105 (281)
++.|..+|||+|++++=.++++...++++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~ 31 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFE 31 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCc
Confidence 478999999999999999999987776554
No 143
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.38 E-value=0.064 Score=47.49 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.9
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCCCC
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
++++++.|| |+|||.|..-.|.|.++...|.+.
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~ 64 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 64 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 679999999 999999999999999999998643
No 144
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.29 E-value=0.15 Score=42.81 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=34.7
Q ss_pred hhHHHHhhc-cCCCcEEEEEEeCC-------CChhhhcccccHHHHhccCCCCccee
Q 046260 60 EFLDRALTS-KQRNAYTSVLFYAS-------WCPFSRDVRPTFEALSSMFPQMEHYT 108 (281)
Q Consensus 60 ~~ld~iL~~-~~~~~~vlVlFYA~-------WCpfSk~L~PiFe~LA~~FP~i~~va 108 (281)
+.+++.+.. .++++.++|.|+++ |||-|+...|+.++.-...|.-.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv 62 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLV 62 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEE
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEE
Confidence 356666654 24568999999986 99999999999999887777544443
No 145
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.03 E-value=0.21 Score=50.48 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=58.3
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc-----------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY----------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY----------- 122 (281)
-..++++.++++-... .+.-+=-|+.++||+|..+.=..++++...|++.+-.++.. .+|.+..+|
T Consensus 460 ~~~l~~~~~~~i~~~~--~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~-~~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 460 GQPLGEELLEKIKKIT--KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS-HFPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred CCCCCHHHHHHHHhcC--CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc-ccHHHHHhCCceecCEEEEC
Confidence 3456677666665432 34445567899999999999999999999998876666544 588888777
Q ss_pred --eeecCCccccChHHHHH
Q 046260 123 --FQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 123 --~~Y~G~~~~RtlesLv~ 139 (281)
+.|.|. -+.+.+++
T Consensus 537 ~~~~~~G~---~~~~~~~~ 552 (555)
T TIGR03143 537 DQQVYFGK---KTIEEMLE 552 (555)
T ss_pred CEEEEeeC---CCHHHHHH
Confidence 557777 67776654
No 146
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.89 E-value=0.16 Score=40.46 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=38.7
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhceeecCCccccChHHHHH-HHHHhCCCCcccccc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTYFQYNGFIGCDLLNFLLV-SLLFAGFDPVEYFAE 154 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY~~Y~G~~~~RtlesLv~-~~~~TGi~p~~~~~v 154 (281)
+|.|-.||||||++.+=.++++.-.|. .+.|++. .+...+.+ +.+.||...+|.+-+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~---~vdid~~-------------------~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPA---VHEIDKE-------------------PAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCE---EEEcCCC-------------------ccHHHHHHHHHHhcCCCCcCeEEE
Confidence 578999999999999998888754432 2333321 12223334 677778877777666
Q ss_pred cc
Q 046260 155 DE 156 (281)
Q Consensus 155 ~~ 156 (281)
+.
T Consensus 68 ~g 69 (99)
T TIGR02189 68 GG 69 (99)
T ss_pred CC
Confidence 54
No 147
>PRK15000 peroxidase; Provisional
Probab=92.42 E-value=0.084 Score=46.91 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCcEEEEEEeC-CCChhhhcccccHHHHhccCCCC
Q 046260 71 RNAYTSVLFYA-SWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 71 ~~~~vlVlFYA-~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
++++++|.||+ +|||.|..-.|.|.++...|.+.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~ 67 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR 67 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 37899999999 59999999999999999999744
No 148
>smart00594 UAS UAS domain.
Probab=92.40 E-value=0.11 Score=42.15 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=23.7
Q ss_pred hHHHHhhcc-CCCcEEEEEEeCCCChhhhccc
Q 046260 61 FLDRALTSK-QRNAYTSVLFYASWCPFSRDVR 91 (281)
Q Consensus 61 ~ld~iL~~~-~~~~~vlVlFYA~WCpfSk~L~ 91 (281)
++++++... +.++.++|.||++||+.|+.+.
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~ 46 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFN 46 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHH
Confidence 455555432 3468999999999999999875
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.91 E-value=0.42 Score=47.73 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=65.3
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc----------
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY---------- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY---------- 122 (281)
+-..++++..+++-.. ..+.-+--|+.+-||+|....=.+++++...|++.+-.+|.. .+|.+..+|
T Consensus 100 ~~~~l~~~~~~~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~-~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA-LFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCCCCHHHHHHHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch-hCHHHHHhcCCcccCEEEE
Confidence 3456677777666543 245667899999999999999999999999999876666654 688888877
Q ss_pred ---eeecCCccccChHHHHH-HHHH
Q 046260 123 ---FQYNGFIGCDLLNFLLV-SLLF 143 (281)
Q Consensus 123 ---~~Y~G~~~~RtlesLv~-~~~~ 143 (281)
..|.|. .+.+.+++ ..+.
T Consensus 177 ~~~~~~~g~---~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 NGEEFHNGR---MDLAELLEKLEET 198 (515)
T ss_pred CCcEEEecC---CCHHHHHHHHhhc
Confidence 567788 88888877 4433
No 150
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=91.55 E-value=0.13 Score=45.20 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=31.1
Q ss_pred CcEEEEEEeC-CCChhhhcccccHHHHhccCCCC--cceeE
Q 046260 72 NAYTSVLFYA-SWCPFSRDVRPTFEALSSMFPQM--EHYTI 109 (281)
Q Consensus 72 ~~~vlVlFYA-~WCpfSk~L~PiFe~LA~~FP~i--~~vai 109 (281)
+++++|.||+ +||+.|..-.+.+.++.+.|.+. ..++|
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6799999995 88999999889999999998743 34555
No 151
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.87 E-value=0.45 Score=44.26 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS 112 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s 112 (281)
.|..+++..+-+.+..-..+-+|+|--|+.-=|-|+-+.-+++.||.+||++++|.|..-
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at 151 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPAT 151 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccc
Confidence 477888887776666555679999999999999999999999999999999999887543
No 152
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=90.81 E-value=0.16 Score=44.83 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=25.0
Q ss_pred eeechhhHHHHhhccCCCcEEEEEEeCCCChhhhccc-ccHH
Q 046260 55 FEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVR-PTFE 95 (281)
Q Consensus 55 ~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~-PiFe 95 (281)
..-+++.++++-. .++.++|.+|++||++|+.|+ -.|+
T Consensus 23 ~~w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~ 61 (163)
T PF03190_consen 23 QPWGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFS 61 (163)
T ss_dssp B-SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcC
Confidence 3556677887765 478999999999999999876 3443
No 153
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.72 E-value=0.07 Score=39.48 Aligned_cols=23 Identities=9% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEeCCCChhhhcccccHHHHhc
Q 046260 77 VLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
+.|..+|||+|++.+..+++..-
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i 24 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGV 24 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCC
Confidence 57888999999999999998753
No 154
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.51 E-value=0.32 Score=36.40 Aligned_cols=43 Identities=9% Similarity=0.297 Sum_probs=31.9
Q ss_pred EEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
|..+.++||.|..+....++++..+. + .+.+.+....+.+ .+|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i-~~ei~~~~~~~~~-~~y 45 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-I-EVEIIDIEDFEEI-EKY 45 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-E-EEEEEETTTHHHH-HHT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-C-eEEEEEccCHHHH-HHc
Confidence 45578889999999999999999885 4 4455555444555 566
No 155
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=90.33 E-value=1.3 Score=33.42 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=50.1
Q ss_pred eeechh-hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC-CCcceeEeec-------cCCcccc--hhc-
Q 046260 55 FEVDGE-FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP-QMEHYTIEQS-------SALPRYL--LTY- 122 (281)
Q Consensus 55 ~~vd~~-~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP-~i~~vaie~s-------~~~psi~--srY- 122 (281)
.++++. .+++.+. .++.++|-|+.++|. .+...|.++|..+. ++.+...... ...|++. .+.
T Consensus 2 ~~i~s~~~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~~~i~l~~~~~ 75 (97)
T cd02981 2 KELTSKEELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKPGSVVLFKPFE 75 (97)
T ss_pred eecCCHHHHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCCCceEEeCCcc
Confidence 345444 4666665 578999999999997 67889999999886 3333222211 1123322 122
Q ss_pred ---eeecCCccccChHHHHHH
Q 046260 123 ---FQYNGFIGCDLLNFLLVS 140 (281)
Q Consensus 123 ---~~Y~G~~~~RtlesLv~~ 140 (281)
..|.|. .+.++|.++
T Consensus 76 ~~~~~y~g~---~~~~~l~~f 93 (97)
T cd02981 76 EEPVEYDGE---FTEESLVEF 93 (97)
T ss_pred cCCccCCCC---CCHHHHHHH
Confidence 679999 888888884
No 156
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=90.27 E-value=0.16 Score=38.19 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCChhhhcccccHHHHhccC
Q 046260 72 NAYTSVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 72 ~~~vlVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++..++.|..+|||+|++.+=.+++..-.|
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y 35 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDF 35 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCc
Confidence 445567999999999999999888754333
No 157
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.15 E-value=0.27 Score=35.59 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.9
Q ss_pred EEEeCCCChhhhcccccHHHHhccCC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
+.|+.+.||||..+.|..+++....+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~ 27 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADD 27 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcC
Confidence 68999999999999999999975544
No 158
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.13 E-value=0.26 Score=40.88 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCC
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
.++.++|.|+-.-||||+++.|..+++...+|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 368899999999999999999999999887763
No 159
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=89.83 E-value=0.24 Score=46.44 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=31.3
Q ss_pred CcEEEEEEe-CCCChhhhcccccHHHHhccCCCC--cceeE
Q 046260 72 NAYTSVLFY-ASWCPFSRDVRPTFEALSSMFPQM--EHYTI 109 (281)
Q Consensus 72 ~~~vlVlFY-A~WCpfSk~L~PiFe~LA~~FP~i--~~vai 109 (281)
++++++.|| |+|||.|..-.|.|.++...|.+. ..++|
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigI 138 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGV 138 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 678989999 899999999999999999988543 34444
No 160
>PRK13189 peroxiredoxin; Provisional
Probab=89.21 E-value=0.3 Score=44.18 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=29.1
Q ss_pred CcEEEE-EEeCCCChhhhcccccHHHHhccCCC--CcceeE
Q 046260 72 NAYTSV-LFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 72 ~~~vlV-lFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
++++++ .|-|+|||.|..-.|.|+++...|.+ +..++|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vigv 75 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGL 75 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 666554 56699999999999999999999853 334444
No 161
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=89.08 E-value=0.21 Score=36.60 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.8
Q ss_pred EEEEeCCCChhhhcccccHHHHhc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
++.|+.+|||+|++.+=.+++..-
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi 26 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGL 26 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCC
Confidence 478999999999999999988543
No 162
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=88.89 E-value=0.26 Score=46.09 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=33.4
Q ss_pred hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 61 FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 61 ~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
.-+++|... .+++.+|-||.+=||+|++++|+-..+++.|.
T Consensus 133 ~~~~~i~~l-a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg 173 (248)
T PRK13703 133 QQRQAIAKL-AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG 173 (248)
T ss_pred HHHHHHHHH-HhcceEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 344445433 35799999999999999999999999999864
No 163
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.81 E-value=0.26 Score=43.61 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=26.7
Q ss_pred CcEEEE-EEeCCCChhhhcccccHHHHhccCCC
Q 046260 72 NAYTSV-LFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 72 ~~~vlV-lFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
+++++| .|.|+|||.|..-.|.|.++...|.+
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~ 59 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK 59 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 566655 67899999999999999999988864
No 164
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.97 E-value=0.3 Score=34.49 Aligned_cols=25 Identities=12% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEeCCCChhhhcccccHHHHhcc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSM 100 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~ 100 (281)
.+.|..+|||+|++.+-.+++..-.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~ 25 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP 25 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe
Confidence 3789999999999999999887633
No 165
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=86.91 E-value=0.46 Score=44.65 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=32.9
Q ss_pred HHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCC
Q 046260 62 LDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 62 ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
-+++|... +.++.+|-||.+=||+|++++|+-..+++.|.
T Consensus 141 ~~~~i~~l-a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg 180 (256)
T TIGR02739 141 KEKAIQQL-SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG 180 (256)
T ss_pred HHHHHHHH-HhceeEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 44444433 35799999999999999999999999999875
No 166
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=86.69 E-value=0.35 Score=42.74 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=26.3
Q ss_pred EEEEEEeCCCChhhhcccccHHHHhccCCC
Q 046260 74 YTSVLFYASWCPFSRDVRPTFEALSSMFPQ 103 (281)
Q Consensus 74 ~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~ 103 (281)
.+++.|.|+|||.|..-.|.+.++.+.|.+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~ 57 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKK 57 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999998864
No 167
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=86.39 E-value=0.37 Score=34.81 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEEEeCCCChhhhcccccHHHHhc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
++.|..+|||+|++.+-.+++..-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i 25 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGV 25 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC
Confidence 468999999999999999988643
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.09 E-value=0.52 Score=40.95 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHH
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEA 96 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~ 96 (281)
.++.+++.|+-+.||||+++.+..++
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 35899999999999999999998886
No 169
>PRK13599 putative peroxiredoxin; Provisional
Probab=84.98 E-value=0.67 Score=41.83 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.5
Q ss_pred CcE-EEEEEeCCCChhhhcccccHHHHhccCCC--CcceeE
Q 046260 72 NAY-TSVLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 72 ~~~-vlVlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
+++ +++.|.|+|||.|..-.|.|.++...|.+ +..++|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigI 68 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGL 68 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 455 57899999999999999999999999853 334454
No 170
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=84.21 E-value=2.2 Score=36.63 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHh-ccCCCCcceeEeec-------cCCcccchhc--
Q 046260 53 PPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALS-SMFPQMEHYTIEQS-------SALPRYLLTY-- 122 (281)
Q Consensus 53 pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA-~~FP~i~~vaie~s-------~~~psi~srY-- 122 (281)
-.+.+|+-++++++. +.++++|.|=.-- .=-.-+=-|.++| ..-.....+-+.+. ..+..+..||
T Consensus 5 G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 5 GCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp TSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred ceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 378999999999997 6799999995421 1122333466777 33333333222111 1112233333
Q ss_pred ------------------eee--cCCccccChHHHHH-HHHHhCC
Q 046260 123 ------------------FQY--NGFIGCDLLNFLLV-SLLFAGF 146 (281)
Q Consensus 123 ------------------~~Y--~G~~~~RtlesLv~-~~~~TGi 146 (281)
++| +|+ -++|.|-. .+.+||+
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~---~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGD---VTADNLQRFVKSNTGL 121 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS----S-HHHHHHHHHHTSS-
T ss_pred CcccCCEEEEecCCCCCCccCCccCC---ccHHHHHHHHHhCCCe
Confidence 777 787 99999999 7777776
No 171
>PRK13191 putative peroxiredoxin; Provisional
Probab=83.73 E-value=0.78 Score=41.35 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=29.3
Q ss_pred CcEEE-EEEeCCCChhhhcccccHHHHhccCCC--CcceeE
Q 046260 72 NAYTS-VLFYASWCPFSRDVRPTFEALSSMFPQ--MEHYTI 109 (281)
Q Consensus 72 ~~~vl-VlFYA~WCpfSk~L~PiFe~LA~~FP~--i~~vai 109 (281)
+++++ +.|-|+|||.|..-.|.|+++...|.. ...+++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 55554 488899999999999999999998853 334444
No 172
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=83.42 E-value=1 Score=35.62 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=24.3
Q ss_pred hhHHHHhhccCCCcEEEEEEe-----CCCChhhhcccccHHHHhc
Q 046260 60 EFLDRALTSKQRNAYTSVLFY-----ASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFY-----A~WCpfSk~L~PiFe~LA~ 99 (281)
+.++++++ +++. |.|- +||||||++.+=.++++.-
T Consensus 3 ~~v~~~i~---~~~V--vvf~kg~~~~~~Cp~C~~ak~lL~~~~i 42 (97)
T TIGR00365 3 ERIKEQIK---ENPV--VLYMKGTPQFPQCGFSARAVQILKACGV 42 (97)
T ss_pred HHHHHHhc---cCCE--EEEEccCCCCCCCchHHHHHHHHHHcCC
Confidence 34566665 3444 3553 4999999999999988753
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=83.32 E-value=1.3 Score=35.91 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCccee
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYT 108 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~va 108 (281)
...+.+++.|+-.=||||+++.+...++-+.+-+.+.+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~ 48 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVK 48 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEE
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceE
Confidence 346899999999999999999999998888873233333
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.24 E-value=0.27 Score=45.74 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=41.7
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+++..++.|+|+||.-|+++.=++++++..+++...+.+++. .+|-|...|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~-~~~eis~~~ 66 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAE-EFPEISNLI 66 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhh-hhhHHHHHH
Confidence 578888999999999999999999999999977655555544 577777555
No 175
>PRK10824 glutaredoxin-4; Provisional
Probab=82.65 E-value=0.58 Score=38.98 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=26.4
Q ss_pred hhHHHHhhccCCCcEEEEEEeC-----CCChhhhcccccHHHHhccC
Q 046260 60 EFLDRALTSKQRNAYTSVLFYA-----SWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA-----~WCpfSk~L~PiFe~LA~~F 101 (281)
+.++++++ +++. |.|-. ||||||++..=.++++.-.|
T Consensus 6 ~~v~~~I~---~~~V--vvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~ 47 (115)
T PRK10824 6 EKIQRQIA---ENPI--LLYMKGSPKLPSCGFSAQAVQALSACGERF 47 (115)
T ss_pred HHHHHHHh---cCCE--EEEECCCCCCCCCchHHHHHHHHHHcCCCc
Confidence 45666665 3333 56766 69999999999999886444
No 176
>PRK10638 glutaredoxin 3; Provisional
Probab=82.39 E-value=0.53 Score=35.47 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEeCCCChhhhcccccHHHHhccC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++.|..+|||||++.+=.+++..-.|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y 29 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF 29 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc
Confidence 45777899999999999998865433
No 177
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=81.04 E-value=3.4 Score=41.12 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccH------HHHhccCCCCc--ceeEeeccCCcccchhc
Q 046260 51 PNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTF------EALSSMFPQME--HYTIEQSSALPRYLLTY 122 (281)
Q Consensus 51 ~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiF------e~LA~~FP~i~--~vaie~s~~~psi~srY 122 (281)
-+.|.++|++|+.+++. +.+...|.||.|= +-.+...--| -+|+...-... .++..++.....++.|.
T Consensus 33 kDRVi~LneKNfk~~lK---kyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALK---KYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp S--CEEE-TTTHHHHHH---H-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred ccceEEcchhHHHHHHH---hhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 37799999999999997 5788889999987 4444443333 24443322222 35555555555555443
Q ss_pred ----------------eeecCCccccChHHHHH-HHHHhCCCCcccc
Q 046260 123 ----------------FQYNGFIGCDLLNFLLV-SLLFAGFDPVEYF 152 (281)
Q Consensus 123 ----------------~~Y~G~~~~RtlesLv~-~~~~TGi~p~~~~ 152 (281)
.+|.|. |+.+.|++ +.+... .|+..+
T Consensus 109 gv~E~~SiyVfkd~~~IEydG~---~saDtLVeFl~dl~e-dPVeiI 151 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVIEYDGE---RSADTLVEFLLDLLE-DPVEII 151 (383)
T ss_dssp T--STTEEEEEETTEEEEE-S-----SHHHHHHHHHHHHS-SSEEEE
T ss_pred CccccCcEEEEECCcEEEecCc---cCHHHHHHHHHHhcc-cchhhh
Confidence 999999 99999999 777766 565433
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=80.37 E-value=1 Score=32.72 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++.|..+|||+|.+.+=.+++..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~ 25 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENG 25 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 57899999999999988887654
No 179
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=79.52 E-value=1.6 Score=35.80 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=42.5
Q ss_pred hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhceeecCCccccChHHHHH
Q 046260 60 EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTYFQYNGFIGCDLLNFLLV 139 (281)
Q Consensus 60 ~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY~~Y~G~~~~RtlesLv~ 139 (281)
+..++++. +.-+|-|--+|||+|.+++=.|.++. ++...+.+|+. + +| +.+-+
T Consensus 5 ~~v~~~i~-----~~~VVifSKs~C~~c~~~k~ll~~~~---v~~~vvELD~~---~---------~g-------~eiq~ 57 (104)
T KOG1752|consen 5 AKVRKMIS-----ENPVVIFSKSSCPYCHRAKELLSDLG---VNPKVVELDED---E---------DG-------SEIQK 57 (104)
T ss_pred HHHHHHhh-----cCCEEEEECCcCchHHHHHHHHHhCC---CCCEEEEccCC---C---------Cc-------HHHHH
Confidence 34566664 23346899999999999998888821 22223334432 1 11 13333
Q ss_pred -HHHHhCCCCcccccccc
Q 046260 140 -SLLFAGFDPVEYFAEDE 156 (281)
Q Consensus 140 -~~~~TGi~p~~~~~v~~ 156 (281)
+.+.||...++.+-+..
T Consensus 58 ~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 58 ALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred HHHHhcCCCCCCEEEECC
Confidence 66778888777776653
No 180
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=79.12 E-value=1 Score=34.77 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.0
Q ss_pred CCChhhhcccccHHHHhc
Q 046260 82 SWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 82 ~WCpfSk~L~PiFe~LA~ 99 (281)
||||+|++.+=.+++..-
T Consensus 21 ~~Cp~C~~ak~~L~~~~i 38 (90)
T cd03028 21 PRCGFSRKVVQILNQLGV 38 (90)
T ss_pred CCCcHHHHHHHHHHHcCC
Confidence 799999999999988863
No 181
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.60 E-value=4.7 Score=39.56 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=70.7
Q ss_pred CCCCCCeeechhhHHHHhhccCCCcEEEEEEeC----CCChhhhcccccHHHHhccC----CCCc----ceeEeeccCCc
Q 046260 49 ISPNPPFEVDGEFLDRALTSKQRNAYTSVLFYA----SWCPFSRDVRPTFEALSSMF----PQME----HYTIEQSSALP 116 (281)
Q Consensus 49 ~~~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA----~WCpfSk~L~PiFe~LA~~F----P~i~----~vaie~s~~~p 116 (281)
+....|+-+|++++.+.+..-.+|-.+.|.|-| .-|.-|+...-.|..+|..+ |+-. .+...+.+.-|
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 445679999999999999987888889999998 47999999999999999764 3333 45555554455
Q ss_pred ccchhc---------------------eeecCCccccChHHHHH-HHHHhCCC
Q 046260 117 RYLLTY---------------------FQYNGFIGCDLLNFLLV-SLLFAGFD 147 (281)
Q Consensus 117 si~srY---------------------~~Y~G~~~~RtlesLv~-~~~~TGi~ 147 (281)
.+...+ ..+.+..-..+.|++++ +++.|.++
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 544433 22222211255889999 88888876
No 182
>PRK10329 glutaredoxin-like protein; Provisional
Probab=75.68 E-value=1.6 Score=33.59 Aligned_cols=23 Identities=9% Similarity=0.201 Sum_probs=19.2
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++.|..+|||+|++.+=.+++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~g 25 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRG 25 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCC
Confidence 46889999999999998887643
No 183
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.89 E-value=1.9 Score=31.17 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEeCCCChhhhcccccHHHHhccC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++|+++|||+|++.+=..++..-.|
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~ 26 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV 26 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc
Confidence 5788999999999987777766544
No 184
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=72.75 E-value=4.1 Score=35.90 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=26.5
Q ss_pred EEEEEEeCCCChhhhcccccH---HHHhccCCCC
Q 046260 74 YTSVLFYASWCPFSRDVRPTF---EALSSMFPQM 104 (281)
Q Consensus 74 ~vlVlFYA~WCpfSk~L~PiF---e~LA~~FP~i 104 (281)
..+|+|+---||||+++.|.+ +.+.+.+|+-
T Consensus 39 ~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 457999999999999999977 8888888743
No 185
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=72.06 E-value=1.8 Score=31.74 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEeCCCChhhhcccccHHHHh
Q 046260 77 VLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA 98 (281)
+.|..++||+|++.+-.+++..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~ 23 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHG 23 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCC
Confidence 5688899999999999988753
No 186
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=71.67 E-value=2.3 Score=34.96 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=23.3
Q ss_pred hHHHHhhcc-CCCcEEEEEEeCC----CChhhhccc
Q 046260 61 FLDRALTSK-QRNAYTSVLFYAS----WCPFSRDVR 91 (281)
Q Consensus 61 ~ld~iL~~~-~~~~~vlVlFYA~----WCpfSk~L~ 91 (281)
.++++++.. +..+.++|.||+| ||.||+..-
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l 40 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTL 40 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHc
Confidence 455666542 4569999999999 999997543
No 187
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=71.09 E-value=3.5 Score=37.63 Aligned_cols=30 Identities=7% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCCcEEEEEEeCCCChhhhcccccHHHHhc
Q 046260 70 QRNAYTSVLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 70 ~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
..++.+++.|.=+-||||+++.+..+++-+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 345889999999999999999999888765
No 188
>PTZ00062 glutaredoxin; Provisional
Probab=70.62 E-value=3.5 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.4
Q ss_pred eCCCChhhhcccccHHHHhc
Q 046260 80 YASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 80 YA~WCpfSk~L~PiFe~LA~ 99 (281)
++||||||+++.=.+++..-
T Consensus 124 ~~p~C~~C~~~k~~L~~~~i 143 (204)
T PTZ00062 124 TFPFCRFSNAVVNMLNSSGV 143 (204)
T ss_pred CCCCChhHHHHHHHHHHcCC
Confidence 45899999999988887643
No 189
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.23 E-value=9.9 Score=40.56 Aligned_cols=40 Identities=30% Similarity=0.689 Sum_probs=30.6
Q ss_pred chhHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHhcccCcccc
Q 046260 181 YLVFAVLFLCLR-----VLVYIFPE---VLSRLKAFWVSYVPHLNLEI 220 (281)
Q Consensus 181 yL~la~lFv~lr-----~ly~~~P~---~~s~ik~~W~~~~~~~nl~~ 220 (281)
=|+|+++|||+- ++|+|+|. ++.-=-..|+.|++|..=|+
T Consensus 72 ~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~ 119 (697)
T PF09726_consen 72 GLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHTDRGI 119 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccCCc
Confidence 589999999985 57888883 23333567999999998776
No 190
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=60.12 E-value=4.3 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.6
Q ss_pred EEEeCCCChhhhcccccHHHHhccC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
-+|+.++||+|++.+-..+...-.|
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~ 26 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPY 26 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCc
Confidence 3789999999999998888885444
No 191
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=58.57 E-value=47 Score=27.30 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=43.7
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS 112 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s 112 (281)
|.+++++|++++... +.+.+++.|+..=....+.+.-.++++|..+.+--+++..+.
T Consensus 79 v~~~t~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~ 135 (184)
T PF13848_consen 79 VPELTPENFEKLFSS--PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDA 135 (184)
T ss_dssp CEEESTTHHHHHHST--SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEET
T ss_pred ccccchhhHHHHhcC--CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeeh
Confidence 889999999999972 124578888877788889999999999999886434554333
No 192
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=56.91 E-value=5 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEeCCCChhhhcccccHHHHhccC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
.+++.++||||++.+-..+..+-.|
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~ 26 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPV 26 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCe
Confidence 3788999999999998887776544
No 193
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=54.34 E-value=6.7 Score=38.75 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred EEEEeCCCChhhhcccccHHHHhccC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
++.|..||||+|++.+=.+++..-.|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~ 29 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPF 29 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 57899999999999999988876444
No 194
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=52.17 E-value=8.8 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=17.7
Q ss_pred EEEeCCCChhhhcccccHHHHhc
Q 046260 77 VLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
.+|+.+.||+|++.+=..++..-
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi 25 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGI 25 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCC
Confidence 57999999999999855555443
No 195
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=52.03 E-value=49 Score=28.34 Aligned_cols=83 Identities=19% Similarity=0.074 Sum_probs=58.3
Q ss_pred CeeechhhHHHHhhccCCCcEEEEEEeCC---CChhhhcccccHHHHhccCCCC-cceeEeeccCCcccchhc-------
Q 046260 54 PFEVDGEFLDRALTSKQRNAYTSVLFYAS---WCPFSRDVRPTFEALSSMFPQM-EHYTIEQSSALPRYLLTY------- 122 (281)
Q Consensus 54 V~~vd~~~ld~iL~~~~~~~~vlVlFYA~---WCpfSk~L~PiFe~LA~~FP~i-~~vaie~s~~~psi~srY------- 122 (281)
...||+++++.-+.. +. ..|+|.+. -+|=+.-.+=+-++++..|++- -.++..+.+.++.+..+|
T Consensus 19 ~~~~~~~~~~~~~~~---~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPT 94 (132)
T PRK11509 19 WTPVSESRLDDWLTQ---AP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPA 94 (132)
T ss_pred CCccccccHHHHHhC---CC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCE
Confidence 346777899999872 33 34677764 5777888899999999999843 245555666788888888
Q ss_pred ----------eeecCCccccChHHHHH-HHHH
Q 046260 123 ----------FQYNGFIGCDLLNFLLV-SLLF 143 (281)
Q Consensus 123 ----------~~Y~G~~~~RtlesLv~-~~~~ 143 (281)
....|. ++.+.+.+ +.+.
T Consensus 95 Ll~FkdGk~v~~i~G~---~~k~~l~~~I~~~ 123 (132)
T PRK11509 95 TLVFTGGNYRGVLNGI---HPWAELINLMRGL 123 (132)
T ss_pred EEEEECCEEEEEEeCc---CCHHHHHHHHHHH
Confidence 344455 77777777 4433
No 196
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=51.79 E-value=7.1 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.9
Q ss_pred EEEeCCCChhhhcccccHHHHhccCC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
.+|+.++||+|++.+-..++..-.|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~ 27 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVP 27 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCce
Confidence 47888999999999988887755443
No 197
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=25 Score=31.87 Aligned_cols=61 Identities=18% Similarity=0.433 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCchhhhcccCCCCCCCCCCCCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhh
Q 046260 9 YRFIFIFSVILSIRLVSSASLCPQDSVVFLNNLQSQCPPGISPNPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSR 88 (281)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~Cp~~~~~~~~~~~~~Cp~~~~~~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk 88 (281)
-|+++++++|+++.+++ |..+.. -.-++| -+|+.=..+..+++.++.|--+-|++|.
T Consensus 2 mRvl~i~Lliis~fl~a----~~s~~e-----------------k~s~~~--~~~d~ksi~~~~Kylllmfes~~C~yC~ 58 (182)
T COG2143 2 MRVLLIVLLIISLFLSA----CKSNNE-----------------KRSNID--VFDDNKSISPNDKYLLLMFESNGCSYCE 58 (182)
T ss_pred cchHHHHHHHHHHHHHH----HhCCch-----------------hhhhhh--hHHHHHhcCccCcEEEEEEcCCCChHHH
Confidence 37888999999888875 433310 000111 0111111124579999999999999999
Q ss_pred cccc
Q 046260 89 DVRP 92 (281)
Q Consensus 89 ~L~P 92 (281)
+++-
T Consensus 59 ~~KK 62 (182)
T COG2143 59 RFKK 62 (182)
T ss_pred HHHH
Confidence 8864
No 198
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=50.96 E-value=7.7 Score=30.48 Aligned_cols=25 Identities=16% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEeCCCChhhhcccccHHHHhccC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
+.|+-|+||+|++..-.+++..-.|
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEY 26 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCc
Confidence 5789999999999998888865444
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=48.11 E-value=11 Score=28.92 Aligned_cols=23 Identities=9% Similarity=0.446 Sum_probs=18.2
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
++-|--+|||+|++.+=..++..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g 25 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKG 25 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcC
Confidence 46788899999999887777443
No 200
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=45.56 E-value=10 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=20.3
Q ss_pred EEEeCCCChhhhcccccHHHHhccC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
.+|+.++||+|++.+=..++.+-.|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~ 26 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV 26 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc
Confidence 5789999999999988777766544
No 201
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=44.67 E-value=18 Score=33.37 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCChhhhcccccHHHHhc
Q 046260 71 RNAYTSVLFYASWCPFSRDVRPTFEALSS 99 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~PiFe~LA~ 99 (281)
..+.+++.|.=+-||||+++.+.-.++-+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45789999999999999999887665443
No 202
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=42.69 E-value=11 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEeCCCChhhhcccccHHHHhcc
Q 046260 78 LFYASWCPFSRDVRPTFEALSSM 100 (281)
Q Consensus 78 lFYA~WCpfSk~L~PiFe~LA~~ 100 (281)
+++.++||||++.+=..+...-.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~ 23 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP 23 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE
T ss_pred CCCcCCChHHHHHHHHHHHcCCe
Confidence 57899999999998777776643
No 203
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=38.14 E-value=29 Score=26.25 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=34.3
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
+++|.-+-|+-|..++.+.+++...+| -.+...+.+.++.+..||
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHh
Confidence 678999999999999999999887777 134444455677788888
No 204
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=35.37 E-value=97 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=20.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 046260 179 EPYLVFAVLFLCLRVLVYIFPEVLS 203 (281)
Q Consensus 179 e~yL~la~lFv~lr~ly~~~P~~~s 203 (281)
|++|.|+.+||..-++|.++--+++
T Consensus 13 EwFLF~~AIFiAItIlYILLalL~E 37 (117)
T PF07234_consen 13 EWFLFFGAIFIAITILYILLALLFE 37 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999888877554444
No 205
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=35.11 E-value=23 Score=33.37 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCCeeechhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCccee
Q 046260 52 NPPFEVDGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYT 108 (281)
Q Consensus 52 ~pV~~vd~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~va 108 (281)
.||+.+||++-.++++=.+++...+|+|-.=-||.=..=.+.|+++++.|.++..+.
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl 138 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFL 138 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhee
Confidence 569999999866666654578889999999999999999999999999999875443
No 206
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=34.50 E-value=17 Score=26.78 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=17.4
Q ss_pred EEEEeCCCChhhhcccccHHHHh
Q 046260 76 SVLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA 98 (281)
+.+++.++||||++.+=.-+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g 24 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE 24 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC
Confidence 35788899999998776655554
No 207
>PHA01399 membrane protein P6
Probab=33.68 E-value=57 Score=30.42 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 046260 194 LVYIFPEVLSRLKAFW 209 (281)
Q Consensus 194 ly~~~P~~~s~ik~~W 209 (281)
.+|+||.+...+|++|
T Consensus 71 awf~fpa~IAIIKNLW 86 (242)
T PHA01399 71 AWFFFPAFAAFLQSAW 86 (242)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3489999999999999
No 208
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=32.86 E-value=21 Score=28.69 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=18.3
Q ss_pred EEEeCCCChhhhcccccHHHHh
Q 046260 77 VLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA 98 (281)
..|+-++||+|++..=.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~ 23 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHG 23 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcC
Confidence 4688999999999987777754
No 209
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=32.62 E-value=1e+02 Score=26.17 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=53.9
Q ss_pred chhhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccC------------C----c--ccc
Q 046260 58 DGEFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSA------------L----P--RYL 119 (281)
Q Consensus 58 d~~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~------------~----p--si~ 119 (281)
|-..+.++|. ...-|+|+|..+-=-....|+ +|.++|......+.++..+|.. . | -..
T Consensus 8 d~KdfKKLLR---Tr~NVLvLy~ks~k~a~~~Lk-~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLLR---TRNNVLVLYSKSAKSAEALLK-LLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHHh---hcCcEEEEEecchhhHHHHHH-HHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 4458999997 346799999998877777777 7888888777777777666632 1 1 122
Q ss_pred hhc------eeecCCccccChHHHHHHH
Q 046260 120 LTY------FQYNGFIGCDLLNFLLVSL 141 (281)
Q Consensus 120 srY------~~Y~G~~~~RtlesLv~~~ 141 (281)
..| .+|+-+ -|..|+++|.
T Consensus 84 kHYKdG~fHkdYdR~---~t~kSmv~Fl 108 (112)
T cd03067 84 KHYKDGDFHTEYNRQ---LTFKSMVAFL 108 (112)
T ss_pred hcccCCCccccccch---hhHHHHHHHh
Confidence 223 777777 7888888854
No 210
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=32.46 E-value=24 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEeCCCChhhhcccccHHHHhccC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMF 101 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~F 101 (281)
+..|+-|||++|++..=.+++..-.|
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~ 27 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPF 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 45789999999999887777665444
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=30.62 E-value=1.7e+02 Score=29.90 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=58.7
Q ss_pred HHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEee-----------ccCCcccch------hc-e
Q 046260 62 LDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQ-----------SSALPRYLL------TY-F 123 (281)
Q Consensus 62 ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~-----------s~~~psi~s------rY-~ 123 (281)
|.+++... .++..++.|..+=|..|..++=.-++++++=+.+.....+. ....|++.- .+ .
T Consensus 357 l~~~~~~l-~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRL-ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhc-CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 55556533 46889999999999999999999999999887664322221 123466441 12 8
Q ss_pred eecCCccccChHHHHH-HHHHhCCCC
Q 046260 124 QYNGFIGCDLLNFLLV-SLLFAGFDP 148 (281)
Q Consensus 124 ~Y~G~~~~RtlesLv~-~~~~TGi~p 148 (281)
+|+|--+-....||+. +.+..|-.+
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~~~~~~~ 461 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYNAAGPGQ 461 (555)
T ss_pred EEEecCccHhHHHHHHHHHHhcCCCC
Confidence 8898533477889998 777665543
No 212
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=30.39 E-value=25 Score=24.98 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEeCCCChhhhcccccHHHHhccCC
Q 046260 77 VLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
.+||.++||+|++.+=..++..-.|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e 27 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELN 27 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCE
Confidence 47899999999998887777765553
No 213
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=51 Score=28.75 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHH
Q 046260 181 YLVFAVLFLCLRVLVYI 197 (281)
Q Consensus 181 yL~la~lFv~lr~ly~~ 197 (281)
++++||+|++.|.+..+
T Consensus 86 tv~lAWiFVl~Ry~Hs~ 102 (139)
T COG5331 86 TVNLAWIFVLFRYAHSV 102 (139)
T ss_pred eeHHHHHHHHHHHHHHH
Confidence 77899999999987754
No 214
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=27.19 E-value=2.1e+02 Score=27.45 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCeeech-hhHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc--------e
Q 046260 53 PPFEVDG-EFLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY--------F 123 (281)
Q Consensus 53 pV~~vd~-~~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY--------~ 123 (281)
-|.++.. +.+-+.++...+.....|.-|-|--+=|-.|--.---||..||.+++..+..+..- ...+| .
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g--as~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG--ASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc--chhhhcccCCceEE
Confidence 3666655 34444554333456777999999999999999999999999999888777554211 11333 6
Q ss_pred eecCCc
Q 046260 124 QYNGFI 129 (281)
Q Consensus 124 ~Y~G~~ 129 (281)
-|.|++
T Consensus 217 iYkgGe 222 (273)
T KOG3171|consen 217 IYKGGE 222 (273)
T ss_pred EeeCCc
Confidence 788883
No 215
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=25.79 E-value=35 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.3
Q ss_pred EEEeCCCChhhhcccccHHHHh
Q 046260 77 VLFYASWCPFSRDVRPTFEALS 98 (281)
Q Consensus 77 VlFYA~WCpfSk~L~PiFe~LA 98 (281)
..|+-++||+|++..=.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~ 23 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANG 23 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcC
Confidence 3689999999999998777743
No 216
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=23.44 E-value=56 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEeCCCChhhhcccccHHHHhccCCCC
Q 046260 78 LFYASWCPFSRDVRPTFEALSSMFPQM 104 (281)
Q Consensus 78 lFYA~WCpfSk~L~PiFe~LA~~FP~i 104 (281)
.|.=|+|++|=.+.|.+.++...+++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588899999999999999999998853
No 217
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=22.41 E-value=58 Score=30.84 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCcEEEEEEeCCCChhhhccc-ccHHHHhc
Q 046260 71 RNAYTSVLFYASWCPFSRDVR-PTFEALSS 99 (281)
Q Consensus 71 ~~~~vlVlFYA~WCpfSk~L~-PiFe~LA~ 99 (281)
.++..++..-|.|||+|...+ |.+.+|++
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr 86 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSR 86 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHh
Confidence 578898999999999998765 78888875
No 218
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=21.83 E-value=1.3e+02 Score=28.06 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=43.1
Q ss_pred Ceeec-hh-hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeec
Q 046260 54 PFEVD-GE-FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQS 112 (281)
Q Consensus 54 V~~vd-~~-~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s 112 (281)
..+|. +. .++... +.+-|++-||=|-=.-||.|--+++.||..++...++.+++-
T Consensus 68 y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae 124 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAE 124 (211)
T ss_pred EEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecc
Confidence 34554 33 444444 477888999999999999999999999999998888777654
No 219
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=21.45 E-value=34 Score=33.63 Aligned_cols=49 Identities=6% Similarity=0.033 Sum_probs=38.1
Q ss_pred cEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccchhc
Q 046260 73 AYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLLTY 122 (281)
Q Consensus 73 ~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~srY 122 (281)
.|..+.+|-+||++...++|.+.-+..++|.. ++.+..-+++-++.+.+
T Consensus 175 ~~~~~~ry~~~~~~t~l~~p~~~~~~~~r~~~-~~e~~~~~~~~slat~f 223 (319)
T KOG2640|consen 175 SCLEPVRYVPEGGPTILLAPDGNLFTWARPAS-KFELLRQETYSSLATVF 223 (319)
T ss_pred cceeeeEeccccCcccccCcCCCcchhccccc-ccchhhhhhHHHHHHHH
Confidence 37899999999999999999999999999943 44444433455655555
No 220
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.73 E-value=2.9e+02 Score=27.75 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=53.8
Q ss_pred hHHHHhhccCCCcEEEEEEeCCCChhhhcccccHHHHhccCCCCcceeEeeccCCcccch-----h-ceeecCCccccCh
Q 046260 61 FLDRALTSKQRNAYTSVLFYASWCPFSRDVRPTFEALSSMFPQMEHYTIEQSSALPRYLL-----T-YFQYNGFIGCDLL 134 (281)
Q Consensus 61 ~ld~iL~~~~~~~~vlVlFYA~WCpfSk~L~PiFe~LA~~FP~i~~vaie~s~~~psi~s-----r-Y~~Y~G~~~~Rtl 134 (281)
.|.+++... .++..++.|.. =|+.|+.++=.-+++++.=|++..-..+.....|++.- . ..+|+|--+-...
T Consensus 9 ~l~~~~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 9 QLKQYLELL-ERPIELVASLD-DSEKSAELKELLEEIASLSDKITVEEDSLDVRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred HHHHHHHhC-CCCEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEccCCCCCCEEEEEcCCccceEEEEecCccHHH
Confidence 344555432 36777777766 59999999999999999988764321121223577542 1 2889985344778
Q ss_pred HHHHH-HHHHhC
Q 046260 135 NFLLV-SLLFAG 145 (281)
Q Consensus 135 esLv~-~~~~TG 145 (281)
.+|+. +.+..|
T Consensus 87 ~s~i~~i~~~~~ 98 (517)
T PRK15317 87 TSLVLALLQVGG 98 (517)
T ss_pred HHHHHHHHHhcC
Confidence 88888 666544
No 221
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.10 E-value=78 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=24.3
Q ss_pred EEEEeCCCChhhhcccccHHHHhccCC
Q 046260 76 SVLFYASWCPFSRDVRPTFEALSSMFP 102 (281)
Q Consensus 76 lVlFYA~WCpfSk~L~PiFe~LA~~FP 102 (281)
+..|+=+.||||-...|.++++...|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 457888999999999999999999985
Done!