BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046277
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YW1|A Chain A, Structure Of Ytnj From Bacillus Subtilis In Complex With
Fmn
Length = 442
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 183 IPRHAPRRVTSTLKLDKLDNISNEWLHADILIFN--TGQWWVPGKLFQV---GCYFQVGN 237
+P H R + LD + + N W H D I N TGQ++ KL ++ G YFQV
Sbjct: 142 LPEHTERYEIAQEHLDVVRGLWNSWEH-DAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEG 200
Query: 238 SLKLGMSIR------------TAFRLALGTWAAWVERSIDTNKTRVFFRTFEPSHWSDQS 285
L +G S + T + A A S +T+ F+ + S +D+
Sbjct: 201 PLNIGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVK-SRAADEG 259
Query: 286 HRLCNVTQNPMTEPIGREHHVFSDSVLEVIKNMK-----IPITVLNITSLSSFRSDAHVG 340
+V P PI +D+ E K + IPI +T L+ F D +
Sbjct: 260 RDPSSVRIFPGISPI------VADTEEEAEKKYREFAELIPIENA-VTYLARFFDDYDLS 312
Query: 341 QWNDNQSAPDCA 352
+ ++ PD
Sbjct: 313 VYPLDEPFPDIG 324
>pdb|1TVL|A Chain A, Structure Of Ytnj From Bacillus Subtilis
Length = 454
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 183 IPRHAPRRVTSTLKLDKLDNISNEWLHADILIFN--TGQWWVPGKLFQV---GCYFQVGN 237
+P H R + LD + + N W H D I N TGQ++ KL ++ G YFQV
Sbjct: 144 LPEHTERYEIAQEHLDVVRGLWNSWEH-DAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEG 202
Query: 238 SLKLGMSIR------------TAFRLALGTWAAWVERSIDTNKTRVFFRTFEPSHWSDQS 285
L +G S + T + A A S +T+ F+ + S +D+
Sbjct: 203 PLNIGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVK-SRAADEG 261
Query: 286 HRLCNVTQNPMTEPIGREHHVFSDSVLEVIKNMK-----IPITVLNITSLSSFRSDAHVG 340
+V P PI +D+ E K + IPI +T L+ F D +
Sbjct: 262 RDPSSVRIFPGISPI------VADTEEEAEKKYREFAELIPIENA-VTYLARFFDDYDLS 314
Query: 341 QWNDNQSAPDCA 352
+ ++ PD
Sbjct: 315 VYPLDEPFPDIG 326
>pdb|3MK7|A Chain A, The Structure Of Cbb3 Cytochrome Oxidase
pdb|3MK7|D Chain D, The Structure Of Cbb3 Cytochrome Oxidase
pdb|3MK7|G Chain G, The Structure Of Cbb3 Cytochrome Oxidase
pdb|3MK7|K Chain K, The Structure Of Cbb3 Cytochrome Oxidase
Length = 474
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 306 VFSDSVLEVIKNMKIPITVLNITSLSSFRSDAHVGQWNDNQS 347
+ + ++L V+ N++IP+T + SL + +DA V W + +
Sbjct: 168 ILTVAILHVVNNLEIPVTAMKSYSLYAGATDAMVQWWYGHNA 209
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 327 ITSLSSFRSDAHVGQWNDNQSA-------PDCAHWCLPGVPDVWNEIFFSCLFHD 374
+T ++ + +V W + +A PD A + + VP+ N ++ + LFHD
Sbjct: 84 VTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHD 138
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 312 LEVIKNMKIPITVLNITSLSSFRSDAHVGQWNDNQSAPDCAHWC 355
LE+ +K+ + T SS D H+G +D + P +H+C
Sbjct: 67 LELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPGLSHFC 110
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 312 LEVIKNMKIPITVLNITSLSSFRSDAHVGQWNDNQSAPDCAHWC 355
LE+ +K+ + T SS D H+G +D + P +H+C
Sbjct: 67 LELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPGLSHFC 110
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 312 LEVIKNMKIPITVLNITSLSSFRSDAHVGQWNDNQSAPDCAHWC 355
LE+ +K+ + T SS D H+G +D + P +H+C
Sbjct: 26 LELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPGLSHFC 69
>pdb|2XID|A Chain A, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Dls)
pdb|2XID|B Chain B, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Dls)
Length = 457
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 120 SMSRTQWESLICLLMTRVEDKKSVYEVNGNNITKRIRFLGV---RFSSFNFTIEF 171
S+ TQW + + R+EDKK V V +N+T R G+ R F+F IE
Sbjct: 310 SLIGTQWHPEDLVDIIRMEDKKEVIPVT-HNLTLRKTVTGLAGDRTKDFHFEIEL 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,935,095
Number of Sequences: 62578
Number of extensions: 499088
Number of successful extensions: 1117
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 8
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)