BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046277
         (380 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O34974|MOXC_BACSU Putative monooxygenase MoxC OS=Bacillus subtilis (strain 168)
           GN=moxC PE=1 SV=1
          Length = 442

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 31/192 (16%)

Query: 183 IPRHAPRRVTSTLKLDKLDNISNEWLHADILIFN--TGQWWVPGKLFQV---GCYFQVGN 237
           +P H  R   +   LD +  + N W H D  I N  TGQ++   KL ++   G YFQV  
Sbjct: 142 LPEHTERYEIAQEHLDVVRGLWNSWEH-DAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEG 200

Query: 238 SLKLGMSIR------------TAFRLALGTWAAWVERSIDTNKTRVFFRTFEPSHWSDQS 285
            L +G S +            T  + A     A    S    +T+ F+   + S  +D+ 
Sbjct: 201 PLNIGRSKQGEPVVFQAGSSETGRQFAAKNADAIFTHSNSLEETKAFYADVK-SRAADEG 259

Query: 286 HRLCNVTQNPMTEPIGREHHVFSDSVLEVIKNMK-----IPITVLNITSLSSFRSDAHVG 340
               +V   P   PI       +D+  E  K  +     IPI    +T L+ F  D  + 
Sbjct: 260 RDPSSVRIFPGISPI------VADTEEEAEKKYREFAELIPIENA-VTYLARFFDDYDLS 312

Query: 341 QWNDNQSAPDCA 352
            +  ++  PD  
Sbjct: 313 VYPLDEPFPDIG 324


>sp|P58290|RPOD_LACLC RNA polymerase sigma factor RpoD (Fragment) OS=Lactococcus lactis
           subsp. cremoris GN=rpoD PE=3 SV=1
          Length = 364

 Score = 34.3 bits (77), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 255 TWAAWVERSIDTNKTRVFFRTFE-PSHWSDQSHRLCNVTQN--------PMTEPIGREHH 305
           T+A W  R   T       RT   P H  +  ++L  V +N        P  E IG+E H
Sbjct: 182 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELH 241

Query: 306 VFSDSVLEVIKNMKIPITVLNITSLSSFRSDAHVGQW 342
           +  D V EV+K  + P++   + +      D+H+G +
Sbjct: 242 MAPDKVREVLKIAQEPVS---LETPIGEEDDSHLGDF 275


>sp|Q04506|RPOD_LACLA RNA polymerase sigma factor RpoD OS=Lactococcus lactis subsp.
           lactis (strain IL1403) GN=rpoD PE=3 SV=2
          Length = 386

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 255 TWAAWVERSIDTNKTRVFFRTFE-PSHWSDQSHRLCNVTQN--------PMTEPIGREHH 305
           T+A W  R   T       RT   P H  +  ++L  V +N        P  E IG+E H
Sbjct: 204 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELH 263

Query: 306 VFSDSVLEVIKNMKIPITVLNITSLSSFRSDAHVGQW 342
           +  D V EV+K  + P++   + +      D+H+G +
Sbjct: 264 MAPDKVREVLKIAQEPVS---LETPIGEEDDSHLGDF 297


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,880,922
Number of Sequences: 539616
Number of extensions: 6031170
Number of successful extensions: 14784
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14784
Number of HSP's gapped (non-prelim): 3
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)