BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046279
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 51/256 (19%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPL------CKSNSTFPFQALRIIDLSHNEFTGS 55
++ P W+G L L IL L +N F G + C+S L +DL+ N F G+
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS--------LIWLDLNTNLFNGT 553
Query: 56 LPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLY-------------- 101
+P +F ++ KI G +Y+ + D + G LL
Sbjct: 554 IPAAMF--KQSGKIAANFIAGKRYV--YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 102 --KILIIFRT-----------------LDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLT 142
I R LD S N G +P+ +G+ L +LNL HN ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 143 GNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTF 202
G+IP +G++ L LDLS NKL G IP+ + A+T L ++LS N L G IP QF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 203 DNNSYIGNIHLCGEPL 218
++ N LCG PL
Sbjct: 730 PPAKFLNNPGLCGYPL 745
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 117/283 (41%), Gaps = 80/283 (28%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
+S F + + +ELK+L + SN+F GP+ P ++L+ + L+ N+FTG +P +
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPI----PPLPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYY----------------------------LDSVTVAM 93
+ + + GL G +Y +D++ + M
Sbjct: 291 GACDTLT-------GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKM 342
Query: 94 KGQDVL--------------LYKILIIFRTLDFSSNRFH--------------------- 118
+G VL L + TLD SSN F
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 119 -----GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL 173
G++P L N L L+LS N L+G IP+SLG+++ L L L N L G IP++L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 174 LAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGE 216
+ V L +L L +N L G IP G T N + N L GE
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEM 73
+ L L L SN F GP+ + P L+ + L +N FTG +P T+ E + +
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS- 426
Query: 74 EFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKV 133
F YL + G L R L N GE+P+ L K+L+
Sbjct: 427 ---------FNYLSGTIPSSLGS-------LSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 134 LNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRI 193
L L N LTG IP+ L N T L + LS N+L G IP+ + + LA L LS N G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 194 P 194
P
Sbjct: 531 P 531
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 43/183 (23%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
+S T P LGSLS+L+ L L N G + + + L + L N+ TG +P
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--- 484
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV 121
GL + + S+NR GE+
Sbjct: 485 --------------GLSNCTNLNW------------------------ISLSNNRLTGEI 506
Query: 122 PEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALAS 181
P+ +G ++L +L LS+NS +GNIPA LG+ +L LDL+ N +G IP + + +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 182 LNL 184
N
Sbjct: 567 ANF 569
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 41 ALRIIDLSHNEFTGSLPRTIFVSM---EAMKIVDEMEFGLQYIG---GFYYLDSVTV--- 91
+L +DLS N +G P T S+ +K ++ L + G G L+S+ V
Sbjct: 101 SLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 92 ---AMKGQDVL---LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI 145
++ G +V+ L + L S N+ G+V + +L+ L++S N+ + I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 146 PASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP----RGNQFNT 201
P LG+ +AL+ LD+S NKL G + T L LN+S NQ G IP + Q+ +
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275
Query: 202 FDNNSYIGNI 211
N + G I
Sbjct: 276 LAENKFTGEI 285
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 51/256 (19%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPL------CKSNSTFPFQALRIIDLSHNEFTGS 55
++ P W+G L L IL L +N F G + C+S L +DL+ N F G+
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS--------LIWLDLNTNLFNGT 550
Query: 56 LPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLY-------------- 101
+P +F ++ KI G +Y+ + D + G LL
Sbjct: 551 IPAAMF--KQSGKIAANFIAGKRYV--YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 102 --KILIIFRT-----------------LDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLT 142
I R LD S N G +P+ +G+ L +LNL HN ++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 143 GNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTF 202
G+IP +G++ L LDLS NKL G IP+ + A+T L ++LS N L G IP QF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 203 DNNSYIGNIHLCGEPL 218
++ N LCG PL
Sbjct: 727 PPAKFLNNPGLCGYPL 742
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 117/283 (41%), Gaps = 80/283 (28%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
+S F + + +ELK+L + SN+F GP+ P ++L+ + L+ N+FTG +P +
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPI----PPLPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYY----------------------------LDSVTVAM 93
+ + + GL G +Y +D++ + M
Sbjct: 288 GACDTLT-------GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKM 339
Query: 94 KGQDVL--------------LYKILIIFRTLDFSSNRFH--------------------- 118
+G VL L + TLD SSN F
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 119 -----GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL 173
G++P L N L L+LS N L+G IP+SLG+++ L L L N L G IP++L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 174 LAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGE 216
+ V L +L L +N L G IP G T N + N L GE
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEM 73
+ L L L SN F GP+ + P L+ + L +N FTG +P T+ E + +
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS- 423
Query: 74 EFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKV 133
F YL + G L R L N GE+P+ L K+L+
Sbjct: 424 ---------FNYLSGTIPSSLGS-------LSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 134 LNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRI 193
L L N LTG IP+ L N T L + LS N+L G IP+ + + LA L LS N G I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 194 P 194
P
Sbjct: 528 P 528
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 43/183 (23%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
+S T P LGSLS+L+ L L N G + + + L + L N+ TG +P
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--- 481
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV 121
GL + + S+NR GE+
Sbjct: 482 --------------GLSNCTNLNW------------------------ISLSNNRLTGEI 503
Query: 122 PEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALAS 181
P+ +G ++L +L LS+NS +GNIPA LG+ +L LDL+ N +G IP + + +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 182 LNL 184
N
Sbjct: 564 ANF 566
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 41 ALRIIDLSHNEFTGSLPRTIFVSM---EAMKIVDEMEFGLQYIG---GFYYLDSVTV--- 91
+L +DLS N +G P T S+ +K ++ L + G G L+S+ V
Sbjct: 98 SLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 155
Query: 92 ---AMKGQDVL---LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI 145
++ G +V+ L + L S N+ G+V + +L+ L++S N+ + I
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 213
Query: 146 PASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP----RGNQFNT 201
P LG+ +AL+ LD+S NKL G + T L LN+S NQ G IP + Q+ +
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 272
Query: 202 FDNNSYIGNI 211
N + G I
Sbjct: 273 LAENKFTGEI 282
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 39 FQALRIIDLSHNEFTGSLPRTIF-------VSMEAMKIVDEMEFGLQYIGGFYYL-DSVT 90
+ L +D S+N +G+LP +I ++ + +I + G F L S+T
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMT 180
Query: 91 VAMKGQDVLLYKILIIFRTL-----DFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI 145
++ ++ L KI F L D S N G+ + G+ K+ + ++L+ NSL ++
Sbjct: 181 IS---RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 146 PASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNN 205
+G L LDL N+++G +P+ L + L SLN+S+N L G IP+G FD +
Sbjct: 238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 206 SYIGNIHLCGEPLTA 220
+Y N LCG PL A
Sbjct: 297 AYANNKCLCGSPLPA 311
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 119 GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTA 178
G +P+ L K+L L+ S+N+L+G +P S+ ++ L + N++ G IP+ + +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 179 L-ASLNLSYNQLRGRIP 194
L S+ +S N+L G+IP
Sbjct: 175 LFTSMTISRNRLTGKIP 191
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 115 NRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLL 174
N G +P + L L ++H +++G IP L + L +LD S+N L G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 175 AVTALASLNLSYNQLRGRIP 194
++ L + N++ G IP
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 109 TLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL-ESLDLSFNKLHG 167
TLDFS N G +P + + +L + N ++G IP S G+ + L S+ +S N+L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 168 IIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGL 227
IP A+LNL++ L + G+ F ++ IHL L GL
Sbjct: 189 KIPP------TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 228 PK 229
K
Sbjct: 243 SK 244
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 86 LDSVT-VAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144
LD+V + KG VL I L N+F VP+ L N+K L +++LS+N ++
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL 69
Query: 145 IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDN 204
S NMT L +L LS+N+L I P + +L L+L N + +P G F++
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEG----AFND 124
Query: 205 NSYIGNIHLCGEPLTATCS 223
S + ++ + PL C+
Sbjct: 125 LSALSHLAIGANPLYCDCN 143
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144
YLD + +++ YK L + +D S+NR + N L L LS+N L
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTL---IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 145 IPASLGNMTALESLDLSFNKLHGIIPEQLL-AVTALASLNLSYNQL 189
P + + +L L L N + ++PE ++AL+ L + N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 14/189 (7%)
Query: 43 RIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYI--GGFYYLDSVTV------AMK 94
+ +DL N+ + SLP F + ++++ + LQ + G F L ++ ++
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 95 GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA 154
+ ++ L+ L N+ P V + L L+L +N L +T+
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 155 LESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLC 214
L+ L L N+L + +T L +L L NQL+ R+P G FD+ + + L
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG----AFDSLEKLKMLQLQ 213
Query: 215 GEPLTATCS 223
P TC+
Sbjct: 214 ENPWDCTCN 222
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 16 LKILVLRSNRFYGPLCK-SNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME 74
+K+L + F +C S S+F F ++ + N FT S +F +K + +
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTF-----LNFTQNVFTDS----VFQGCSTLKRLQTLI 383
Query: 75 FGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNF-KSLKV 133
+ F+ + +T M TLD S N + + + +S+ V
Sbjct: 384 LQRNGLKNFFKVALMTKNMSS-----------LETLDVSLNSLNSHAYDRTCAWAESILV 432
Query: 134 LNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRI 193
LNLS N LTG++ L ++ LDL N++ IP+ + + AL LN++ NQL+ +
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-V 488
Query: 194 PRGNQFNTFDNNSYIGNIHLCGEPLTATC 222
P G FD + + I L P TC
Sbjct: 489 PDG----VFDRLTSLQYIWLHDNPWDCTC 513
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 100 LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLD 159
++ L + L N+ V +L LNL+HN L +T L LD
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 160 LSFNKLHGIIPEQLL-AVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPL 218
LS+N+L +PE + +T L L L NQL+ +P G FD + + I L P
Sbjct: 164 LSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS-VPDG----VFDRLTSLQYIWLHDNPW 217
Query: 219 TATC 222
TC
Sbjct: 218 DCTC 221
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLN 135
G+QY+ YL K D+ K L L + N+ V +LK L
Sbjct: 58 GIQYLPNVRYL--ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 136 LSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195
L N L +T L L+L+ N+L + +T L L+LSYNQL+ +P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE 174
Query: 196 G 196
G
Sbjct: 175 G 175
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 84/220 (38%), Gaps = 41/220 (18%)
Query: 32 KSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKI-----VDEMEFGLQYIGGFYYL 86
K + F ++ +DLS N F S+ + F ++ KI + G + G +
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFK 262
Query: 87 DSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHN------- 139
D KG + K T D S ++ + V +F L+ L L+ N
Sbjct: 263 DPDNFTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 140 ------------SLTGNIPASLG-----NMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+L+ N S+ N+ LE LDLS+N + + + L + L L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 183 NLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222
L NQL+ +P G FD + + I L P +C
Sbjct: 377 ALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSC 411
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 126 GNF----KSLKVLNLSHNSLTGNIPASLG-NMTALESLDLSFNKLHGIIPEQLL 174
GNF SL++L L N++ PAS NM LDL+FNK+ I E LL
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 28/208 (13%)
Query: 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF 75
+K + R LC S + PF L D S+N T T+F + + ++ +
Sbjct: 304 IKNFTVSGTRMVHMLCPSKIS-PFLHL---DFSNNLLTD----TVFENCGHLTELETLIL 355
Query: 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRF-HGEVPEVLGNFKSLKVL 134
+ + + +T MK + LD S N + E KSL L
Sbjct: 356 QMNQLKELSKIAEMTTQMKS-----------LQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 135 NLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194
N+S N LT I L ++ LDL NK+ I P+Q++ + AL LN++ NQL+ +P
Sbjct: 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKS-VP 460
Query: 195 RGNQFNTFDNNSYIGNIHLCGEPLTATC 222
G FD + + I L P +C
Sbjct: 461 DG----IFDRLTSLQKIWLHTNPWDCSC 484
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRF-YGPLCKSNSTFPF-QALRIIDLSHNEF 52
IS+ + + SLS+L+IL++ NR Y + S F F Q L +DLSHN+
Sbjct: 33 ISELWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKL 81
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
+ +VL L N +T P +T L LDL N+L + +T L L+L+ NQL
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224
+ IPRG FDN + +I L P CS+
Sbjct: 99 KS-IPRG----AFDNLKSLTHIWLLNNPWDCACSD 128
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
+ +VL L N +T P +T L LDL N+L + +T L L+L+ NQL
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224
+ IPRG FDN + +I L P CS+
Sbjct: 91 KS-IPRG----AFDNLRSLTHIWLLNNPWDCACSD 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
+ +VL L N +T P +T L LDL N+L + +T L L+L+ NQL
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224
+ IPRG FDN + +I L P CS+
Sbjct: 91 KS-IPRG----AFDNLKSLTHIWLLNNPWDCACSD 120
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 26 FYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVD--EMEFGLQYIGGF 83
F G + S++ + L +D H+ ++F+S+ + +D + + G F
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 84 YYLDSVTV-AMKG---QDVLLYKILIIFRTL---DFSSNRFHGEVPEVLGNFKSLKVLNL 136
L S+ V M G Q+ L I R L D S + P + SL+VLN+
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAV-TALASLNLSYN 187
SHN+ + +L+ LD S N + ++L ++LA LNL+ N
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 26 FYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVD--EMEFGLQYIGGF 83
F G + S++ + L +D H+ ++F+S+ + +D + + G F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 84 YYLDSVTV-AMKG---QDVLLYKILIIFRTL---DFSSNRFHGEVPEVLGNFKSLKVLNL 136
L S+ V M G Q+ L I R L D S + P + SL+VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAV-TALASLNLSYN 187
SHN+ + +L+ LD S N + ++L ++LA LNL+ N
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 125 LGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGI 168
+G+ K+LK LN++HN + +P N+T LE LDLS NK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 28/231 (12%)
Query: 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTI-FVSMEAMKIVD 71
L L+ L L N C S S F +L+ +DLS F G + + F+ +E ++ +D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 72 EMEFGLQYIGGF---------YYLD----SVTVAMKGQDVLLYKILIIFRTLDFSSNRFH 118
L+ + F YLD VA G ++ L L + N F
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQ 458
Query: 119 GE-VPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVT 177
+P++ ++L L+LS L P + ++++L+ L+++ N+L + +T
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Query: 178 ALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
+L + L N PR + + + N + E +A CS G P
Sbjct: 519 SLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ------KEQGSAKCSGSGKP 563
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Query: 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144
YLD T ++K ++ L L N+ V SL LNLS N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 145 IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDN 204
+T L+ L L+ N+L + +T L L L NQL+ +P G FD
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDG----VFDR 146
Query: 205 NSYIGNIHLCGEPLTATC 222
+ + I L P TC
Sbjct: 147 LTSLQYIWLHDNPWDCTC 164
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
I+D P L +L+ L L L SN S T +L+ ++ S N+ T P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLT----SLQQLNFSSNQVTDLKPLANL 172
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIFRTLDFSSNRFHG 119
++E + I + + L+S+ +A Q D+ IL L + N+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
L + +L L+L++N ++ P L +T L L L N++ I P L +TAL
Sbjct: 232 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 180 ASLNLSYNQLRGRIPRGN 197
+L L+ NQL P N
Sbjct: 286 TNLELNENQLEDISPISN 303
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 42 LRIIDLSHNEFTGSLP-----RTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVTVAMKG 95
L I+ S+N+ T P + + + M +I D L + G ++ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-----QI 119
Query: 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155
D+ K L L+ SSN L SL+ LN S N +T P L N+T L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL 175
Query: 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
E LD+S NK+ I L +T L SL + NQ+ P G
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 214
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTI-FVSMEAMKIVD 71
L++L L L SN C S S F +L+ +DLS F G + + F+ +E ++ +D
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 72 EMEFGLQYIGGF---------YYLD----SVTVAMKG------------------QDVLL 100
L+ + F YLD VA G Q+ L
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 101 YKILIIFRTL---DFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALES 157
I R L D S + P + SL+VLN+SHN+ + +L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 158 LDLSFNKLHGIIPEQLLAV-TALASLNLSYN 187
LD S N + ++L ++LA LNL+ N
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
+VP+ L ++ VLNL+HN L A+ + L SLD+ FN + + PE + L
Sbjct: 23 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 180 ASLNLSYNQL 189
LNL +N+L
Sbjct: 81 KVLNLQHNEL 90
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 109 TLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168
+LD N PE+ LKVLNL HN L+ + T L L L N + I
Sbjct: 58 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 169 IPEQLLAVTALASLNLSYNQL 189
+ L +L+LS+N L
Sbjct: 118 KNNPFVKQKNLITLDLSHNGL 138
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 129 KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL--LAVTALASLNLSY 186
K+L L+LSHN L+ + + L+ L LS NK+ + E+L A ++L L LS
Sbjct: 126 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 185
Query: 187 NQLRGRIPR-----GNQFNTFDNNSYIG---NIHLCGEPLTATCSNDGLPKAPPSASTDH 238
NQ++ P G F F NN +G LC E + N L + S +T +
Sbjct: 186 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSN 244
Query: 239 EEDETASWLDWKMAKLGYASGLVIG 263
W + M L Y + V+G
Sbjct: 245 TTFLGLKWTNLTMLDLSYNNLNVVG 269
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 38 PFQALR---IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMK 94
PFQ LR I+DLS+N ++ + +E ++I+D L + A
Sbjct: 480 PFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKH--------ANP 530
Query: 95 GQDVLLYKILIIFRTLDFSSNRFHGEVP-EVLGNFKSLKVLNLSHNSLTGNIPASL-GNM 152
G + K L L+ SN F E+P EV + LK+++L N+L +PAS+ N
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQ 588
Query: 153 TALESLDLSFN 163
+L+SL+L N
Sbjct: 589 VSLKSLNLQKN 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
+VP+ L ++ VLNL+HN L A+ + L SLD+ FN + + PE + L
Sbjct: 28 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 85
Query: 180 ASLNLSYNQL 189
LNL +N+L
Sbjct: 86 KVLNLQHNEL 95
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 109 TLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168
+LD N PE+ LKVLNL HN L+ + T L L L N + I
Sbjct: 63 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 169 IPEQLLAVTALASLNLSYNQL 189
+ L +L+LS+N L
Sbjct: 123 KNNPFVKQKNLITLDLSHNGL 143
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 129 KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL--LAVTALASLNLSY 186
K+L L+LSHN L+ + + L+ L LS NK+ + E+L A ++L L LS
Sbjct: 131 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 190
Query: 187 NQLRGRIPR-----GNQFNTFDNNSYIG---NIHLCGEPLTATCSNDGLPKAPPSASTDH 238
NQ++ P G F F NN +G LC E + N L + S +T +
Sbjct: 191 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSN 249
Query: 239 EEDETASWLDWKMAKLGYASGLVIG 263
W + M L Y + V+G
Sbjct: 250 TTFLGLKWTNLTMLDLSYNNLNVVG 274
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 38 PFQALR---IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMK 94
PFQ LR I+DLS+N ++ + +E ++I+D L + A
Sbjct: 485 PFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKH--------ANP 535
Query: 95 GQDVLLYKILIIFRTLDFSSNRFHGEVP-EVLGNFKSLKVLNLSHNSLTGNIPASL-GNM 152
G + K L L+ SN F E+P EV + LK+++L N+L +PAS+ N
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQ 593
Query: 153 TALESLDLSFN 163
+L+SL+L N
Sbjct: 594 VSLKSLNLQKN 604
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
+VP+ L ++ VLNL+HN L A+ + L SLD+ FN + + PE + L
Sbjct: 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 180 ASLNLSYNQL 189
LNL +N+L
Sbjct: 76 KVLNLQHNEL 85
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 109 TLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168
+LD N PE+ LKVLNL HN L+ + T L L L N + I
Sbjct: 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 169 IPEQLLAVTALASLNLSYNQL 189
+ L +L+LS+N L
Sbjct: 113 KNNPFVKQKNLITLDLSHNGL 133
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 129 KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL--LAVTALASLNLSY 186
K+L L+LSHN L+ + + L+ L LS NK+ + E+L A ++L L LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 187 NQLRGRIPR-----GNQFNTFDNNSYIG---NIHLCGEPLTATCSNDGLPKAPPSASTDH 238
NQ++ P G F F NN +G LC E + N L + S +T +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSN 239
Query: 239 EEDETASWLDWKMAKLGYASGLVIG 263
W + M L Y + V+G
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVG 264
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 38 PFQALR---IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMK 94
PFQ LR I+DLS+N ++ + +E ++I+D L + A
Sbjct: 475 PFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKH--------ANP 525
Query: 95 GQDVLLYKILIIFRTLDFSSNRFHGEVP-EVLGNFKSLKVLNLSHNSLTGNIPASL-GNM 152
G + K L L+ SN F E+P EV + LK+++L N+L +PAS+ N
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQ 583
Query: 153 TALESLDLSFN 163
+L+SL+L N
Sbjct: 584 VSLKSLNLQKN 594
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
I+D P L +L+ L L L SN S T +L+ + S N+ T P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLANL 172
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIFRTLDFSSNRFHG 119
++E + I + + L+S+ +A Q D+ IL L + N+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
L + +L L+L++N ++ P L +T L L L N++ I P L +TAL
Sbjct: 232 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 180 ASLNLSYNQLRGRIPRGN 197
+L L+ NQL P N
Sbjct: 286 TNLELNENQLEDISPISN 303
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 42 LRIIDLSHNEFTGSLP-----RTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVTVAMKG 95
L I+ S+N+ T P + + + M +I D L + G ++ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-----QI 119
Query: 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155
D+ K L L+ SSN L SL+ L+ S N +T P L N+T L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
E LD+S NK+ I L +T L SL + NQ+ P G
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 214
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF 61
I+D P L +L+ L L L SN S T +L+ + S N+ T P
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLANL 172
Query: 62 VSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIFRTLDFSSNRFHG 119
++E + I + + L+S+ +A Q D+ IL L + N+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179
L + +L L+L++N ++ P L +T L L L N++ I P L +TAL
Sbjct: 232 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 180 ASLNLSYNQLRGRIPRGN 197
+L L+ NQL P N
Sbjct: 286 TNLELNENQLEDISPISN 303
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 42 LRIIDLSHNEFTGSLP-----RTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVTVAMKG 95
L I+ S+N+ T P + + + M +I D L + G ++ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-----QI 119
Query: 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155
D+ K L L+ SSN L SL+ L+ S N +T P L N+T L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
E LD+S NK+ I L +T L SL + NQ+ P G
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 214
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 38 PFQAL---RIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMK 94
PFQ L R+++LSH S + + ++ ++ LQ G + S++
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTS-NQHLLAGLQDLR-----HLNLQ--GNSFQDGSISKTNL 470
Query: 95 GQDVLLYKILII--FRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNM 152
Q V +ILI+ L FHG +++ L+LSHNSLTG+ +L ++
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 153 TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIH 212
L L+++ N + I P L A++ + +NLS+N L F T+ Y N+H
Sbjct: 523 KGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNI-HFITW----YKENLH 576
Query: 213 LCGEPLTATCSNDGLPKAPPS 233
+ TC+N PPS
Sbjct: 577 KLEDSEETTCAN------PPS 591
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 125 LGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQ-LLAVTALASLN 183
L N + L+ LNLS+N G + LE LD++F LH P + L LN
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 184 LSY 186
LS+
Sbjct: 431 LSH 433
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 13/169 (7%)
Query: 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSME 65
P + ++ LK LVL +N F LC+ N+ F +LR + + N L +E
Sbjct: 292 LPSGIEGMNSLKKLVLNANSF-DQLCQINAA-SFPSLRDLYIKGNMRKLDLGTRCLEKLE 349
Query: 66 AMKIVD----EME------FGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSN 115
++ +D ++E L+ + YL+ G + +K LD +
Sbjct: 350 NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFT 409
Query: 116 RFHGEVPEV-LGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163
H + P N L+VLNLSH L + L + L L+L N
Sbjct: 410 HLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 124 VLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183
+ G L L L N LTG P + + ++ L L NK+ I + L + L +LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 184 LSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222
L NQ+ +P +F++ + + +++L P C
Sbjct: 109 LYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCNC 142
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 100 LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLD 159
++ L + L N+ V +L L L HN L +T L LD
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 160 LSFNKLHGIIPEQLL-AVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPL 218
L N+L + PE + +T L L+L+ NQL+ +P G FD + + +I L P
Sbjct: 164 LDNNQLQSL-PEGVFDKLTQLKQLSLNDNQLKS-VPDG----VFDRLTSLTHIWLLNNPW 217
Query: 219 TATCSN 224
CS+
Sbjct: 218 DCACSD 223
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 74/210 (35%), Gaps = 25/210 (11%)
Query: 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLN 135
G+QY+ YL K D+ K L L + N+ V +LK L
Sbjct: 58 GIQYLPNVRYL--ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 136 LSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195
L N L +T L L L N+L + +T L L+L NQL+ +P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPE 174
Query: 196 GNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLPKAPPSASTDHEEDETASWL-----DWK 250
G FD + + + L ND K+ P D T WL D
Sbjct: 175 G----VFDKLTQLKQLSL----------NDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCA 220
Query: 251 MAKLGYASGLVI---GLSIGYMVLSIGGPR 277
+ + Y S + GL GY+ L R
Sbjct: 221 CSDILYLSRWISQHPGLVFGYLNLDPDSAR 250
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 107 FRTLDFSSNRFHGE--VPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK 164
+TLD S N L N L+ LNLSHN G + LE LDL+F +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 165 LHGIIPEQ-LLAVTALASLNLSY 186
LH P+ + L LNL+Y
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTY 431
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 51/261 (19%)
Query: 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKI 69
L L L+ L L N C S L+ ++LSHNE G L F +++
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQSQAFKECPQLEL 401
Query: 70 VDEMEFGLQYIGG-------FYYLDSVTVA---MKGQDVLLYKILIIFRTLDFSSNRFH- 118
+D + F +I ++L + + + + L L + R L+ N F
Sbjct: 402 LD-LAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD 460
Query: 119 GEVPE--VLGNFKSLKVL------------------------NLSHNSLTGNIPASLGNM 152
G + + +L SL+VL +LSHNSLT + SL ++
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Query: 153 TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIH 212
+ L+L+ N ++ I P L ++ +++NLS+N L F T+ Y N+H
Sbjct: 521 KGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNI-HFLTW----YKENLH 574
Query: 213 LCGEPLTATCSNDGLPKAPPS 233
TC+N PPS
Sbjct: 575 KLEGSEETTCAN------PPS 589
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163
L + TLD S N+ +P + +L VL++S N LT +L + L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
+L + P L L L+L+ NQL +P G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163
L + TLD S N+ +P + +L VL++S N LT +L + L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
+L + P L L L+L+ NQL +P G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 22/213 (10%)
Query: 32 KSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKI-----VDEMEFGLQYIGGFYYL 86
K + F ++ +DLS N F S+ + F ++ KI + G + G +
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFK 262
Query: 87 DSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIP 146
D KG + K T D S ++ + V +F L+ L L+ N +
Sbjct: 263 DPDNFTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 147 ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNS 206
+ +T L+ L L N+L + +T+L + L N PR D S
Sbjct: 317 NAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR------IDYLS 370
Query: 207 YIGNIHLCGEPLTATCSNDGLPK----APPSAS 235
N + E +A CS G P P SAS
Sbjct: 371 RWLNKNSQKEQGSAKCSGSGKPVRSIICPTSAS 403
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 126 GNF----KSLKVLNLSHNSLTGNIPASLG-NMTALESLDLSFNKLHGIIPEQLL 174
GNF SL++L L N++ PAS NM LDL+FNK+ I E LL
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163
L + TLD S N+ +P + +L VL++S N LT +L + L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
+L + P L L L+L+ NQL +P G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
+ +VL+L N +T P ++T L L+L+ N+L + +T L L L NQL
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224
+ IP G FDN + +I+L P CS+
Sbjct: 101 KS-IPMG----VFDNLKSLTHIYLFNNPWDCECSD 130
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163
L + TLD S N+ +P + +L VL++S N LT +L + L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
+L + P L L L+L+ NQL +P G
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
++ VLNL+HN L P + + L LD FN + + PE + L LNL +N+L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 34/80 (42%)
Query: 110 LDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGII 169
LD N PE+ LKVLNL HN L+ + T L LDL N +H I
Sbjct: 54 LDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIK 113
Query: 170 PEQLLAVTALASLNLSYNQL 189
L L+LS+N L
Sbjct: 114 SNPFKNQKNLIKLDLSHNGL 133
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNM--TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187
S++ L+L++N L ++ + T L LDLS+N LH + + +L L+L YN
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 188 QLRGRIPRG 196
++ PR
Sbjct: 283 NIQRLSPRS 291
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 38 PFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL-------------QYIGGFY 84
P + L I+DLS+N ++ + +E ++I+D L ++ G
Sbjct: 478 PLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Query: 85 YLDSVTVAMKGQD---VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSL 141
+L + + G D V ++K L ++++ N + P + + SL+ LNL N +
Sbjct: 537 HLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLI 596
Query: 142 TGNIPASLG-NMTALESLDLSFN 163
T G L SLD+ FN
Sbjct: 597 TSVEKDVFGPPFQNLNSLDMRFN 619
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
SL L+L N +T ASL + L L LSFN + + L L L+L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
++P G ++ YI ++L ++A SND P
Sbjct: 253 V-KVPGG-----LADHKYIQVVYLHNNNISAIGSNDFCP 285
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 133 VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190
+L+L +N +T N+ L +L L NK+ I P + L L LS NQL+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
SL L+L N +T ASL + L L LSFN + + L L L+L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 190 RGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
++P G ++ YI ++L ++A SND P
Sbjct: 253 V-KVPGG-----LADHKYIQVVYLHNNNISAIGSNDFCP 285
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 133 VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190
+L+L +N +T N+ L +L L NK+ I P + L L LS NQL+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 115 NRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMT-ALESLDLSFNKLHGIIPEQL 173
N+ G++P G+ L LNL++N +T IPA+ T +E+L + NKL IP
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396
Query: 174 LA--VTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIG 209
A V+ ++++ SYN++ G + G F+ D + G
Sbjct: 397 DAKSVSVXSAIDFSYNEI-GSV-DGKNFDPLDPTPFKG 432
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 129 KSLKVLNLSHNSL-TGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187
+ ++++ + +N+L T + SL L L+ +N+L G +P + LASLNL+YN
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363
Query: 188 QL 189
Q+
Sbjct: 364 QI 365
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 125 LGNFKSLKVLNLSHNSL-TGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183
+G +LK LN++HN + + +PA N+T L +DLS+N + I L + +N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 184 LS 185
LS
Sbjct: 179 LS 180
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 26 FYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVD--EMEFGLQYIGGF 83
F G + S + + L+ +D H+ + F+S+E + +D + + G F
Sbjct: 380 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 439
Query: 84 YYLDSV-TVAMKGQDVLLYKILIIFRT------LDFSSNRFHGEVPEVLGNFKSLKVLNL 136
L S+ T+ M G + +F LD S + V L++LN+
Sbjct: 440 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 499
Query: 137 SHNSLTGNIPASLGNMTALESLDLSFNKL 165
SHN+L + + +L +LD SFN++
Sbjct: 500 SHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 125 LGNFKSLKVLNLSHNSL-TGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183
+G +LK LN++HN + + +PA N+T L +DLS+N + I L + +N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 184 LS 185
LS
Sbjct: 184 LS 185
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 26 FYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVD--EMEFGLQYIGGF 83
F G + S + + L+ +D H+ + F+S+E + +D + + G F
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 84 YYLDSV-TVAMKGQDVLLYKILIIFRT------LDFSSNRFHGEVPEVLGNFKSLKVLNL 136
L S+ T+ M G + +F LD S + V L++LN+
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 137 SHNSLTGNIPASLGNMTALESLDLSFNKL 165
SHN+L + + +L +LD SFN++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 50 NEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIF 107
N+ T P ++E + I + + L+S+ +A Q D+ IL
Sbjct: 160 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNL 218
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
L + N+ L + +L L+L++N ++ P L +T L L L N++
Sbjct: 219 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 168 IIPEQLLAVTALASLNLSYNQLRGRIPRGN 197
I P L +TAL +L L+ NQL P N
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPISN 302
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 42 LRIIDLSHNEFTGSLP-----RTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVTVAMKG 95
L I+ S+N+ T P + + + M +I D L + G ++ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-----QI 119
Query: 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155
D+ K L L+ SSN L SL+ LN N +T P L N+T L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTL 174
Query: 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
E LD+S NK+ I L +T L SL + NQ+ P G
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 213
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 50 NEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIF 107
N+ T P ++E + I + + L+S+ +A Q D+ IL
Sbjct: 164 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNL 222
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
L + N+ L + +L L+L++N ++ P L +T L L L N++
Sbjct: 223 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 278
Query: 168 IIPEQLLAVTALASLNLSYNQLRGRIPRGN 197
I P L +TAL +L L+ NQL P N
Sbjct: 279 ISP--LAGLTALTNLELNENQLEDISPISN 306
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 50 NEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIF 107
N+ T P ++E + I + + L+S+ +A Q D+ IL
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNL 223
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
L + N+ L + +L L+L++N ++ P L +T L L L N++
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 168 IIPEQLLAVTALASLNLSYNQLRGRIPRGN 197
I P L +TAL +L L+ NQL P N
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISPISN 307
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 50 NEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ--DVLLYKILIIF 107
N+ T P ++E + I + + L+S+ +A Q D+ IL
Sbjct: 160 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQISDITPLGILTNL 218
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
L + N+ L + +L L+L++N ++ P L +T L L L N++
Sbjct: 219 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 168 IIPEQLLAVTALASLNLSYNQLRGRIPRGN 197
I P L +TAL +L L+ NQL P N
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPISN 302
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 42 LRIIDLSHNEFTGSLP-----RTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVTVAMKG 95
L I+ S+N+ T P + + + M +I D L + G ++ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-----QI 119
Query: 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155
D+ K L L+ SSN L SL+ LN N +T P L N+T L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTL 174
Query: 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
E LD+S NK+ I L +T L SL + NQ+ P G
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 213
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 120 EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALE 156
E+P + N +L+VL+LSHN LT +PA LG+ L+
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 131 LKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPE 171
L L L+ NSLT +PA + N++ L LDLS N+L + E
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 126 GNFKSLKV--LNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183
G F LK+ L +S LTG IP L L L L NK+ I E LL + L L
Sbjct: 167 GAFDGLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223
Query: 184 LSYNQLR 190
L +NQ+R
Sbjct: 224 LGHNQIR 230
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182
+V G L L+LSHN L ++P + AL LD+SFN+L + L + L L
Sbjct: 72 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 183 NLSYNQLRGRIP 194
L N+L+ P
Sbjct: 131 YLKGNELKTLPP 142
>pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 283
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 59 TIFVSMEAMKIVDEMEFGLQYIGGFYYL--DSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116
T+ S M + E ++ G F+ L ++ A +G + I+ TLD ++
Sbjct: 48 TVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEG------RYCIVGETLDAKAHH 101
Query: 117 FHGEVPEVLGNF--KSLKVLNLSHNSLTGNIPASLGNMTALESL 158
+ E++ + KSL + + S G IPA+ GN+T +S+
Sbjct: 102 HEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSV 145
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
R LD S V K LKVLNL++N + + + L+ L+LS+N L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 168 IIPEQLLAVTALASLNLSYNQL 189
+ + +A ++L N +
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHI 350
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 23/119 (19%)
Query: 123 EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL----HGIIP-------- 170
+V L+VL L+HN L P ++TAL L L+ N+L H +P
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533
Query: 171 --EQLLA-----VTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222
QLLA +L+ L++++N+ + +TF N N+ + G P C
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYC 588
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 100 LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLD 159
+++ L + L+ + N+ + E +L+VLNLS+N L ++ + + +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 160 LSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLT 219
L N + I + + L +L+L R N T I +I L G L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDL----------RDNALTTIHFIPSIPDIFLSGNKLV 394
Query: 220 ATCSNDGLPKAPPSASTDHEEDETASWLD 248
LPK +A+ H + LD
Sbjct: 395 T------LPKINLTANLIHLSENRLENLD 417
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 35 STFPFQA------LRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFG-LQYIG-----G 82
+T P QA LR + L +N S+P F + +++ +D E L+YI G
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 83 FYYLDSVTVAMKG-QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSL 141
L + + M +D+ L+ L+ S NR P SL+ L L H +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 142 TGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187
+ ++ +LE L+LS N L + + + L ++L++N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 6 FPCWLGSLSELKILVLRSNRFYGPLCK-SNSTFP-----------------------FQA 41
P L LS LK LVL +N+F LC+ S S FP +
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 42 LRIIDLSHNEFTG-------------------SLPRTIFVSMEAMKIVDEMEFGLQYIGG 82
LR +DLSH++ S + + EA K ++E
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL---LDLA 408
Query: 83 FYYLDSVTVAMKGQDVLLYKILIIFRT-LDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSL 141
F L Q++ L K+L + + LD SS + +P +L+ LNL N
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-------ALQHLNLQGNHF 461
Query: 142 -TGNIPA--SLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
GNI SL + LE L LSF L I ++ + ++LS+N+L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 35 STFPFQA------LRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFG-LQYIG-----G 82
+T P QA LR + L +N S+P F + +++ +D E L+YI G
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 83 FYYLDSVTVAMKG-QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSL 141
L + + M +D+ L+ L+ S NR P SL+ L L H +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 142 TGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187
+ ++ +LE L+LS N L + + + L ++L++N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
L +L L HN+LT A L N L +DLS+N+L I+ + + L L +S N+L
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189
L +L L HN+LT A L N L +DLS+N+L I+ + + L L +S N+L
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|3ZS6|A Chain A, The Structural Characterization Of Burkholderia
Pseudomallei Oppa
Length = 506
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 17 KILVLRSNRFYGP---LCKSNSTFPFQ----ALRIIDLSHNEFTGSLPRTIFVSMEAMKI 69
+I++ +S++++ + + + P + ALR+ ++T S+P F + + +
Sbjct: 191 RIVMAKSDKYWNARNVVIRKVTYLPIENDETALRMYQAGQIDYTYSIPAGGFGQI-SKQF 249
Query: 70 VDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVP 122
E+ GLQ +YYL + A+K + V +++ R + S GEVP
Sbjct: 250 GKELRPGLQLATYYYYLKNSDPALKDKRVREALAMVLDREILTSKITQAGEVP 302
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 110 LDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGII 169
L+ SN+ V L L+LS N + +T L L L NKL +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 170 PEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222
+T L L L NQL+ +P G FD + + I L P +C
Sbjct: 93 NGVFDKLTQLKELALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSC 140
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 106 IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASL-GNMTALE 156
I++ + + ++ V + N K K NL N L GNIP L MTA E
Sbjct: 52 IYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEE 103
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
++LD S+NR L +L+ L L+ N + S ++ +LE LDLS+N L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114
Query: 168 IIPEQLLAVTALASLNL 184
+ +++L LNL
Sbjct: 115 LSSSWFKPLSSLTFLNL 131
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167
++LD S+NR L +L+ L L+ N + S ++ +LE LDLS+N L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 88
Query: 168 IIPEQLLAVTALASLNL 184
+ +++L LNL
Sbjct: 89 LSSSWFKPLSSLTFLNL 105
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 100 LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLD 159
++ L TL ++N+ V + L L L N L +T L+ L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 160 LSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
L+ N+L I +T L +L+LS NQL+ +P G
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 100 LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLD 159
++ L TL ++N+ V + L L L N L +T L+ L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 160 LSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196
L+ N+L I +T L +L+LS NQL+ +P G
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 61 FVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFR---TLDFSSNRF 117
+S E K+V E+E ++ FY + V+VA+ G D Y + + TLD +F
Sbjct: 484 LLSEEQYKLVKELEREIEKWKEFYKSERVSVAV-GGDTRSYSVATLMTMNYTLDDVKEKF 542
Query: 118 HGEVPE 123
EVP+
Sbjct: 543 GYEVPQ 548
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 109 TLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168
T+D S R H VP G + ++L L N +T P ++ L+ L L N+L G
Sbjct: 23 TVDCRSKR-HASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GA 78
Query: 169 IPEQLL-AVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLT 219
+P + ++T L L+L NQL +P FD ++ + +C LT
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLT-VLPSA----VFDRLVHLKELFMCCNKLT 125
>pdb|1VME|A Chain A, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga
Maritima At 1.80 A Resolution
pdb|1VME|B Chain B, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga
Maritima At 1.80 A Resolution
Length = 410
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 44 IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQD 97
I++ + + +GSLP T+ ++I+ FG + + GFY + VTV G++
Sbjct: 94 IVNHTEPDHSGSLPATLKTIGHDVEII-ASNFGKRLLEGFYGIKDVTVVKDGEE 146
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 174 LAVTALASLNLSYNQLR----GRIPRGNQ-FNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
+A A L+ +Y+ +R G GNQ F ++ N+++ + + T SNDG+P
Sbjct: 138 MAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 229 KAPPS 233
PP+
Sbjct: 198 NLPPA 202
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 174 LAVTALASLNLSYNQLR----GRIPRGNQ-FNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
+A A L+ +Y+ +R G GNQ F ++ N+++ + + T SNDG+P
Sbjct: 138 MAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 229 KAPPS 233
PP+
Sbjct: 198 NLPPA 202
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 174 LAVTALASLNLSYNQLR----GRIPRGNQ-FNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
+A A L+ +Y+ +R G GNQ F ++ N+++ + + T SNDG+P
Sbjct: 138 MAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 229 KAPPS 233
PP+
Sbjct: 198 NLPPA 202
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 174 LAVTALASLNLSYNQLR----GRIPRGNQ-FNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228
+A A L+ +Y+ +R G GNQ F ++ N+++ + + T SNDG+P
Sbjct: 138 MAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIP 197
Query: 229 KAPPS 233
PP+
Sbjct: 198 NLPPA 202
>pdb|4DIK|A Chain A, Flavo Di-Iron Protein H90a Mutant From Thermotoga Maritima
pdb|4DIK|B Chain B, Flavo Di-Iron Protein H90a Mutant From Thermotoga Maritima
Length = 410
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 44 IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQD 97
I++ + + +GSLP T+ ++I+ FG + + GFY + VTV G++
Sbjct: 94 IVNHTEPDASGSLPATLKTIGHDVEII-ASNFGKRLLEGFYGIKDVTVVKDGEE 146
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 232 PSASTDHEEDETASWLDWKMAKLG 255
P +H ED A WL W + K G
Sbjct: 190 PDQPEEHREDPLAEWLTWTLEKYG 213
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 129 KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN-KLHGIIPEQLLAVTALASLNL 184
++L +L L N+L G A+ +T LE LDLS N +L + P + L +L+L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL 111
>pdb|4DIL|A Chain A, Flavo Di-Iron Protein H90n Mutant From Thermotoga Maritima
pdb|4DIL|B Chain B, Flavo Di-Iron Protein H90n Mutant From Thermotoga Maritima
Length = 410
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 44 IIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQD 97
I++ + + +GSLP T+ ++I+ FG + + GFY + VTV G++
Sbjct: 94 IVNHTEPDNSGSLPATLKTIGHDVEII-ASNFGKRLLEGFYGIKDVTVVKDGEE 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,979,350
Number of Sequences: 62578
Number of extensions: 363699
Number of successful extensions: 1022
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 232
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)