Query 046279
Match_columns 300
No_of_seqs 405 out of 2874
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.8E-27 1E-31 233.3 16.7 213 2-217 392-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.8E-24 6E-29 213.6 14.7 208 2-211 344-582 (968)
3 KOG4194 Membrane glycoprotein 99.8 9.8E-23 2.1E-27 180.2 0.5 235 8-243 215-498 (873)
4 KOG4237 Extracellular matrix p 99.8 1.5E-21 3.3E-26 165.4 -0.8 191 2-195 79-340 (498)
5 KOG4194 Membrane glycoprotein 99.8 5.4E-21 1.2E-25 169.3 1.8 205 9-218 168-404 (873)
6 KOG0444 Cytoskeletal regulator 99.8 3.2E-20 7E-25 165.9 1.2 185 5-196 94-311 (1255)
7 KOG0617 Ras suppressor protein 99.7 4E-20 8.7E-25 140.5 -5.0 161 10-194 29-190 (264)
8 PLN03150 hypothetical protein; 99.7 6.5E-17 1.4E-21 152.4 11.0 118 106-223 419-538 (623)
9 KOG0444 Cytoskeletal regulator 99.7 1.4E-18 3E-23 155.6 -1.7 183 5-195 46-285 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.1E-18 2.3E-23 148.7 -4.1 197 5-211 105-308 (565)
11 KOG0617 Ras suppressor protein 99.7 1.4E-18 3E-23 132.2 -3.8 163 5-192 47-214 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 2.7E-17 5.9E-22 140.2 -0.9 67 5-77 242-309 (565)
13 KOG4237 Extracellular matrix p 99.6 2E-17 4.4E-22 140.6 -2.6 191 2-195 103-364 (498)
14 KOG0618 Serine/threonine phosp 99.6 1.4E-16 3E-21 148.1 2.1 200 5-212 255-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 1.8E-14 3.8E-19 136.7 8.4 120 66-195 343-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 2.8E-14 6.1E-19 135.8 9.6 55 130-190 326-380 (754)
17 PRK15387 E3 ubiquitin-protein 99.5 6.9E-14 1.5E-18 132.7 10.3 64 5-81 215-278 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 4.5E-14 9.7E-19 134.4 8.4 169 6-195 193-363 (754)
19 PLN03150 hypothetical protein; 99.5 4.6E-13 1E-17 126.5 12.3 93 102-194 439-532 (623)
20 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-14 4.8E-19 125.2 2.9 182 6-190 43-263 (319)
21 PLN03210 Resistant to P. syrin 99.5 7.2E-13 1.6E-17 133.5 13.4 183 6-194 626-842 (1153)
22 PLN03210 Resistant to P. syrin 99.4 1.1E-12 2.4E-17 132.2 14.0 86 103-190 776-883 (1153)
23 cd00116 LRR_RI Leucine-rich re 99.4 1.8E-13 3.8E-18 119.5 4.6 184 5-191 14-235 (319)
24 KOG0618 Serine/threonine phosp 99.4 4.1E-14 8.8E-19 132.0 -1.1 176 6-188 279-487 (1081)
25 PF14580 LRR_9: Leucine-rich r 99.3 1.5E-12 3.2E-17 102.4 4.1 124 40-184 19-147 (175)
26 COG4886 Leucine-rich repeat (L 99.3 5.9E-12 1.3E-16 113.3 6.0 177 9-194 111-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 123.0 -5.0 171 14-194 75-250 (722)
28 PF14580 LRR_9: Leucine-rich r 99.2 6.5E-12 1.4E-16 98.8 4.8 121 47-190 4-126 (175)
29 COG4886 Leucine-rich repeat (L 99.2 5.9E-12 1.3E-16 113.3 4.6 162 5-174 130-298 (394)
30 KOG1259 Nischarin, modulator o 99.2 7.1E-13 1.5E-17 109.7 -1.7 131 39-192 283-414 (490)
31 KOG0532 Leucine-rich repeat (L 99.2 4.5E-13 9.7E-18 119.2 -4.1 169 18-196 54-229 (722)
32 KOG1259 Nischarin, modulator o 99.2 2E-12 4.3E-17 107.1 -1.7 135 9-168 279-414 (490)
33 KOG3207 Beta-tubulin folding c 99.1 5.3E-12 1.1E-16 109.2 -0.9 181 12-195 119-318 (505)
34 PF13855 LRR_8: Leucine rich r 99.0 1.3E-10 2.8E-15 75.4 2.7 59 106-164 2-60 (61)
35 PF13855 LRR_8: Leucine rich r 99.0 8.6E-11 1.9E-15 76.3 1.8 61 129-189 1-61 (61)
36 KOG1909 Ran GTPase-activating 99.0 6.7E-11 1.5E-15 99.8 0.8 180 9-189 87-310 (382)
37 KOG3207 Beta-tubulin folding c 99.0 4.5E-10 9.8E-15 97.4 4.0 182 10-191 142-340 (505)
38 KOG1909 Ran GTPase-activating 98.9 3E-09 6.4E-14 90.0 5.0 152 39-190 91-283 (382)
39 KOG1859 Leucine-rich repeat pr 98.8 3.1E-10 6.7E-15 104.2 -4.3 160 7-190 102-292 (1096)
40 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4.1E-14 97.6 -0.9 170 10-190 91-268 (414)
41 KOG1859 Leucine-rich repeat pr 98.7 9.3E-10 2E-14 101.1 -4.0 149 35-191 104-268 (1096)
42 KOG4579 Leucine-rich repeat (L 98.7 1.5E-09 3.2E-14 80.1 -2.4 112 104-224 52-164 (177)
43 KOG0531 Protein phosphatase 1, 98.6 6E-09 1.3E-13 94.4 -1.8 169 10-190 114-290 (414)
44 KOG4579 Leucine-rich repeat (L 98.4 7.4E-09 1.6E-13 76.5 -3.5 90 104-196 76-165 (177)
45 KOG2982 Uncharacterized conser 98.3 5.3E-07 1.2E-11 75.2 3.1 67 9-77 92-158 (418)
46 KOG4658 Apoptotic ATPase [Sign 98.2 1.1E-06 2.5E-11 85.7 4.2 90 98-188 564-653 (889)
47 PRK15386 type III secretion pr 98.2 7E-06 1.5E-10 72.7 8.5 63 10-81 48-111 (426)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.5E-11 52.4 2.5 36 130-166 2-37 (44)
49 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.9E-11 51.5 3.0 36 154-190 2-37 (44)
50 KOG2120 SCF ubiquitin ligase, 98.1 2E-07 4.3E-12 77.7 -2.1 56 16-74 187-243 (419)
51 COG5238 RNA1 Ran GTPase-activa 98.0 6.7E-06 1.5E-10 67.9 4.6 45 9-53 87-133 (388)
52 KOG1644 U2-associated snRNP A' 98.0 7.2E-06 1.6E-10 64.8 4.0 84 104-187 63-150 (233)
53 KOG4658 Apoptotic ATPase [Sign 98.0 9.8E-06 2.1E-10 79.3 5.6 148 14-184 523-675 (889)
54 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 63.7 4.7 128 16-165 21-152 (233)
55 KOG3665 ZYG-1-like serine/thre 97.8 7.2E-06 1.6E-10 78.2 1.8 134 40-190 122-263 (699)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.6E-05 3.4E-10 75.9 3.7 112 39-168 147-265 (699)
57 KOG2120 SCF ubiquitin ligase, 97.8 1.5E-06 3.3E-11 72.6 -3.1 150 40-189 185-350 (419)
58 PRK15386 type III secretion pr 97.6 0.00018 3.9E-09 64.0 6.8 38 39-81 51-89 (426)
59 COG5238 RNA1 Ran GTPase-activa 97.5 0.00017 3.7E-09 59.8 5.3 20 9-28 25-44 (388)
60 KOG2739 Leucine-rich acidic nu 97.5 5.9E-05 1.3E-09 62.0 2.4 38 105-142 91-129 (260)
61 KOG2123 Uncharacterized conser 97.4 9.8E-06 2.1E-10 67.2 -3.2 102 12-135 17-123 (388)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00029 6.2E-09 52.7 4.7 59 9-72 7-65 (129)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.4E-09 60.5 2.1 79 104-184 64-150 (260)
64 PF13306 LRR_5: Leucine rich r 97.2 0.00041 8.9E-09 51.8 3.6 120 37-179 9-128 (129)
65 KOG2982 Uncharacterized conser 96.9 0.00034 7.4E-09 58.8 1.2 109 40-163 45-156 (418)
66 KOG2123 Uncharacterized conser 96.0 0.0004 8.6E-09 57.9 -3.6 81 101-183 37-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.0 0.0018 3.8E-08 32.2 0.1 17 42-59 2-18 (22)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.7E-08 31.6 0.6 19 107-126 2-20 (22)
69 smart00370 LRR Leucine-rich re 95.8 0.0093 2E-07 30.9 2.2 23 39-62 1-23 (26)
70 smart00369 LRR_TYP Leucine-ric 95.8 0.0093 2E-07 30.9 2.2 23 39-62 1-23 (26)
71 PF13504 LRR_7: Leucine rich r 95.7 0.0068 1.5E-07 28.0 1.2 13 41-53 2-14 (17)
72 KOG4308 LRR-containing protein 95.6 0.00011 2.3E-09 67.4 -9.6 174 8-190 109-303 (478)
73 KOG0473 Leucine-rich repeat pr 93.6 0.0012 2.6E-08 53.7 -6.8 60 104-165 64-123 (326)
74 KOG0473 Leucine-rich repeat pr 93.3 0.003 6.4E-08 51.5 -5.1 86 37-142 39-124 (326)
75 smart00369 LRR_TYP Leucine-ric 91.8 0.18 3.9E-06 25.8 2.2 12 155-166 4-15 (26)
76 smart00370 LRR Leucine-rich re 91.8 0.18 3.9E-06 25.8 2.2 12 155-166 4-15 (26)
77 KOG3864 Uncharacterized conser 91.5 0.032 7E-07 44.6 -1.3 82 106-187 102-186 (221)
78 PF13516 LRR_6: Leucine Rich r 91.1 0.061 1.3E-06 27.1 -0.1 15 153-167 2-16 (24)
79 smart00365 LRR_SD22 Leucine-ri 88.6 0.39 8.4E-06 24.8 1.8 14 14-27 2-15 (26)
80 KOG3864 Uncharacterized conser 88.5 0.061 1.3E-06 43.0 -1.9 33 40-73 101-133 (221)
81 KOG1947 Leucine rich repeat pr 87.1 0.25 5.5E-06 45.4 0.9 62 104-165 242-307 (482)
82 TIGR00864 PCC polycystin catio 86.9 0.41 8.9E-06 52.2 2.3 37 159-195 1-37 (2740)
83 smart00364 LRR_BAC Leucine-ric 86.8 0.41 8.8E-06 24.7 1.1 18 40-58 2-19 (26)
84 PF15050 SCIMP: SCIMP protein 86.2 0.43 9.3E-06 34.3 1.4 22 277-298 32-53 (133)
85 KOG1947 Leucine rich repeat pr 83.1 1.1 2.3E-05 41.3 3.0 89 101-189 210-307 (482)
86 smart00368 LRR_RI Leucine rich 82.7 1 2.3E-05 23.5 1.7 12 42-53 4-15 (28)
87 KOG4341 F-box protein containi 80.0 0.34 7.4E-06 43.1 -1.3 84 104-187 345-436 (483)
88 KOG4308 LRR-containing protein 79.9 0.074 1.6E-06 49.0 -5.7 61 107-167 235-304 (478)
89 COG3105 Uncharacterized protei 76.0 2.7 5.9E-05 30.8 2.6 26 251-276 6-31 (138)
90 PF15179 Myc_target_1: Myc tar 75.8 2.1 4.5E-05 33.5 2.0 25 248-272 17-41 (197)
91 PRK11677 hypothetical protein; 74.0 3 6.6E-05 31.3 2.5 23 253-275 3-25 (134)
92 PF11770 GAPT: GRB2-binding ad 73.1 1.7 3.7E-05 32.7 1.0 18 255-272 13-30 (158)
93 KOG3763 mRNA export factor TAP 70.3 1.9 4.1E-05 39.9 0.8 62 104-167 217-284 (585)
94 PF02439 Adeno_E3_CR2: Adenovi 68.8 6.2 0.00013 22.3 2.3 11 258-268 10-20 (38)
95 KOG3763 mRNA export factor TAP 67.3 2.8 6.1E-05 38.9 1.2 65 12-77 216-282 (585)
96 PF06295 DUF1043: Protein of u 59.5 7.5 0.00016 29.0 2.1 21 256-276 2-22 (128)
97 PHA03099 epidermal growth fact 59.5 17 0.00037 26.8 3.8 19 251-269 100-118 (139)
98 PF01102 Glycophorin_A: Glycop 57.3 9.2 0.0002 28.2 2.2 7 258-264 71-77 (122)
99 TIGR00985 3a0801s04tom mitocho 55.7 2.5 5.5E-05 32.2 -1.0 20 253-272 8-27 (148)
100 PF04478 Mid2: Mid2 like cell 55.2 5.3 0.00011 30.5 0.7 16 252-267 50-65 (154)
101 KOG4341 F-box protein containi 54.0 7.1 0.00015 35.1 1.4 157 12-183 292-458 (483)
102 PF14575 EphA2_TM: Ephrin type 51.9 17 0.00036 24.3 2.6 15 258-272 8-22 (75)
103 PF01102 Glycophorin_A: Glycop 51.1 6.9 0.00015 28.8 0.7 22 250-271 67-88 (122)
104 PF01299 Lamp: Lysosome-associ 50.1 9.2 0.0002 33.2 1.5 21 252-272 271-291 (306)
105 PF02064 MAS20: MAS20 protein 49.2 5.6 0.00012 29.3 0.0 18 258-276 3-20 (121)
106 PRK11677 hypothetical protein; 49.1 13 0.00027 28.0 1.8 25 248-272 2-26 (134)
107 PF03672 UPF0154: Uncharacteri 48.8 8.9 0.00019 24.6 0.8 17 256-272 3-19 (64)
108 PF15179 Myc_target_1: Myc tar 44.0 27 0.00058 27.5 2.9 27 251-277 24-50 (197)
109 COG3105 Uncharacterized protei 42.7 18 0.0004 26.7 1.8 24 247-270 6-29 (138)
110 PF11980 DUF3481: Domain of un 42.5 23 0.00049 24.0 2.0 8 259-266 26-33 (87)
111 smart00367 LRR_CC Leucine-rich 42.4 18 0.00038 18.2 1.3 12 40-51 2-13 (26)
112 PF05725 FNIP: FNIP Repeat; I 42.1 53 0.0011 19.0 3.5 8 15-22 13-20 (44)
113 PF13120 DUF3974: Domain of un 42.1 29 0.00062 24.0 2.5 24 254-277 9-32 (126)
114 PF03302 VSP: Giardia variant- 40.7 14 0.00029 33.5 1.1 25 248-272 366-390 (397)
115 TIGR00864 PCC polycystin catio 38.1 23 0.00049 39.7 2.4 32 111-142 1-32 (2740)
116 PF14851 FAM176: FAM176 family 37.8 35 0.00076 26.3 2.7 17 251-267 25-41 (153)
117 PF12297 EVC2_like: Ellis van 37.6 24 0.00051 31.8 2.0 28 251-278 65-92 (429)
118 PHA03291 envelope glycoprotein 37.1 18 0.0004 31.6 1.2 23 251-273 288-310 (401)
119 COG3763 Uncharacterized protei 34.7 44 0.00096 21.8 2.4 19 254-272 8-26 (71)
120 PF04478 Mid2: Mid2 like cell 34.4 11 0.00024 28.8 -0.4 20 250-269 52-71 (154)
121 PF05399 EVI2A: Ectropic viral 34.4 43 0.00094 27.1 2.8 6 241-246 119-124 (227)
122 PF15048 OSTbeta: Organic solu 34.3 54 0.0012 24.1 3.1 11 246-256 32-42 (125)
123 PF05795 Plasmodium_Vir: Plasm 34.2 56 0.0012 28.6 4.0 13 260-272 290-302 (354)
124 PF07204 Orthoreo_P10: Orthore 33.8 31 0.00068 23.9 1.7 29 248-279 41-69 (98)
125 PRK10404 hypothetical protein; 32.4 32 0.0007 24.4 1.7 19 248-270 80-98 (101)
126 PF12606 RELT: Tumour necrosis 32.3 52 0.0011 20.0 2.3 15 258-272 8-22 (50)
127 PF06305 DUF1049: Protein of u 31.9 15 0.00031 23.7 -0.1 20 253-272 21-40 (68)
128 PRK10132 hypothetical protein; 31.4 34 0.00074 24.6 1.7 14 258-271 92-105 (108)
129 PF09835 DUF2062: Uncharacteri 30.6 32 0.00069 26.4 1.6 8 260-267 125-132 (154)
130 COG3216 Uncharacterized protei 30.3 14 0.00031 28.8 -0.4 25 248-272 134-158 (184)
131 PRK01844 hypothetical protein; 29.7 51 0.0011 21.7 2.1 15 258-272 12-26 (72)
132 PF02009 Rifin_STEVOR: Rifin/s 28.5 38 0.00082 29.3 1.8 15 258-272 266-280 (299)
133 PF00558 Vpu: Vpu protein; In 27.3 48 0.001 22.4 1.7 16 256-271 12-27 (81)
134 PF14283 DUF4366: Domain of un 27.3 56 0.0012 26.9 2.5 14 276-289 176-189 (218)
135 KOG4242 Predicted myosin-I-bin 26.7 69 0.0015 29.6 3.1 39 127-166 266-312 (553)
136 PF11770 GAPT: GRB2-binding ad 26.1 62 0.0014 24.6 2.3 24 257-281 11-34 (158)
137 PF14610 DUF4448: Protein of u 25.6 34 0.00073 27.3 1.0 22 249-270 157-178 (189)
138 PF04689 S1FA: DNA binding pro 25.6 28 0.00062 22.1 0.4 22 255-276 18-39 (69)
139 PF06422 PDR_CDR: CDR ABC tran 25.2 81 0.0017 22.4 2.7 7 221-227 18-24 (103)
140 PF14851 FAM176: FAM176 family 24.7 76 0.0017 24.4 2.6 22 251-272 21-42 (153)
141 COG4575 ElaB Uncharacterized c 23.3 62 0.0013 23.0 1.8 13 258-270 89-101 (104)
142 PF05957 DUF883: Bacterial pro 23.1 58 0.0013 22.6 1.7 13 258-270 79-91 (94)
143 PF13807 GNVR: G-rich domain o 21.4 86 0.0019 21.0 2.2 17 256-272 62-78 (82)
144 KOG3607 Meltrins, fertilins an 21.4 1.5E+02 0.0032 29.3 4.5 19 211-229 635-653 (716)
145 PF10577 UPF0560: Uncharacteri 21.2 66 0.0014 31.7 2.1 13 252-264 274-286 (807)
146 PF04995 CcmD: Heme exporter p 21.2 51 0.0011 19.5 0.9 19 251-269 6-24 (46)
147 PF12877 DUF3827: Domain of un 20.9 98 0.0021 29.7 3.0 27 246-272 267-293 (684)
148 PF12732 YtxH: YtxH-like prote 20.9 86 0.0019 20.6 2.1 19 254-272 3-21 (74)
149 PRK00523 hypothetical protein; 20.4 51 0.0011 21.7 0.8 15 258-272 13-27 (72)
150 PRK09458 pspB phage shock prot 20.3 1.2E+02 0.0025 20.2 2.5 15 264-278 16-30 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.8e-27 Score=233.26 Aligned_cols=213 Identities=30% Similarity=0.466 Sum_probs=168.0
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccc-c
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQY-I 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-l 80 (300)
+++.+|.+++.+++|+.|++++|.+++..|..+ ..+++|+.|++++|.+++.+|.. +..+++|+.|++++|.+.. +
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeec
Confidence 345666666667777777777777766666655 66677777777777777655544 5567777777777776632 2
Q ss_pred CCc---eeeeeEEEee---cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 046279 81 GGF---YYLDSVTVAM---KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA 154 (300)
Q Consensus 81 ~~~---~~l~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (300)
+.. ..+..+++.. .+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++
T Consensus 469 p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred CcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 211 1233333333 3344556778899999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCC
Q 046279 155 LESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEP 217 (300)
Q Consensus 155 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~ 217 (300)
|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|...++..+....+.||+.+|+.+
T Consensus 549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999998888888888899999998753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.8e-24 Score=213.58 Aligned_cols=208 Identities=31% Similarity=0.421 Sum_probs=142.6
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCC----------------------CCCCCCCcEEEcccCCCcccCcHH
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNS----------------------TFPFQALRIIDLSHNEFTGSLPRT 59 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----------------------~~~l~~L~~L~Ls~n~l~~~lp~~ 59 (300)
++|.+|.+++.+++|+.|++++|++++..|..+. ...+++|+.|++++|.+++.+|..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 4566677777777777777777766655555440 033445555555555555444433
Q ss_pred HHhCcccccccccccccccccC-----CceeeeeEEEeecCc---hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCC
Q 046279 60 IFVSMEAMKIVDEMEFGLQYIG-----GFYYLDSVTVAMKGQ---DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSL 131 (300)
Q Consensus 60 ~~~~l~~L~~L~l~~n~l~~l~-----~~~~l~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 131 (300)
+..++.|+.|++++|.+.... ....+..+.+..+.. .+..+ ..++|+.|++++|++++..|..+..+++|
T Consensus 424 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 424 -FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred -HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 455555555555555553221 111222333322222 22222 24678999999999999999999999999
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCC-CCCCCCCCcccCC
Q 046279 132 KVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGN-QFNTFDNNSYIGN 210 (300)
Q Consensus 132 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n 210 (300)
+.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|... .+..+..+...+|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999742 2333444444444
Q ss_pred c
Q 046279 211 I 211 (300)
Q Consensus 211 ~ 211 (300)
.
T Consensus 582 ~ 582 (968)
T PLN00113 582 H 582 (968)
T ss_pred c
Confidence 4
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.8e-23 Score=180.22 Aligned_cols=235 Identities=19% Similarity=0.206 Sum_probs=152.8
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCC----------------------CCCCCCCCcEEEcccCCCcccCcHHHHhCcc
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSN----------------------STFPFQALRIIDLSHNEFTGSLPRTIFVSME 65 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~----------------------~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~ 65 (300)
.+|.+|++|+.|+|..|+|.-..-..| .+..+.++++|+|+.|+++ .+..+++-+++
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt 293 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLT 293 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccc
Confidence 356667777777777777653211222 0134555555555555555 55555556666
Q ss_pred cccccccccccccccC--------CceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCC
Q 046279 66 AMKIVDEMEFGLQYIG--------GFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLS 137 (300)
Q Consensus 66 ~L~~L~l~~n~l~~l~--------~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls 137 (300)
.|+.|++++|.|+.+. .+.+++...+.+.......|..+..|++|+|++|.++..-...|..+++|+.|||+
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 6666666666664442 23344444555555666667777777777777777775556677778888888888
Q ss_pred CCCCCCCCC---ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCC
Q 046279 138 HNSLTGNIP---ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLC 214 (300)
Q Consensus 138 ~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~ 214 (300)
+|.+++.+. ..|..+++|+.|++.+|+|..+...+|.++++|++|||.+|.|...-|....-..+..+-+.....+|
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLC 453 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEE
Confidence 888775443 34677888999999999998766778889999999999999998666654433355556666667888
Q ss_pred CCCCC----------------CCCCCCCCCCCCCCCCCCCccccc
Q 046279 215 GEPLT----------------ATCSNDGLPKAPPSASTDHEEDET 243 (300)
Q Consensus 215 ~~~~~----------------~~C~~~~~~~~~~~~~~~~~~~~~ 243 (300)
+|.+. ..|+.|+...+....+....+..|
T Consensus 454 DCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC 498 (873)
T KOG4194|consen 454 DCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVC 498 (873)
T ss_pred eccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhcee
Confidence 87533 578888766554444333333333
No 4
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-21 Score=165.38 Aligned_cols=191 Identities=21% Similarity=0.209 Sum_probs=138.4
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEccc-CCCcccCcHHHHhCcccccccccccccccc-
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSH-NEFTGSLPRTIFVSMEAMKIVDEMEFGLQY- 79 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~- 79 (300)
|+..-|.+|+.+++|+.||||+|.|+...|.+| .++++|..|.+-+ |+|+ .+|...|.++..++.|.+.-|++.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--KGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhh--hhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcch
Confidence 444556699999999999999999998888888 8888877776655 8998 9999889999998888887776532
Q ss_pred -------cCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc------------------------------------
Q 046279 80 -------IGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR------------------------------------ 116 (300)
Q Consensus 80 -------l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~------------------------------------ 116 (300)
++.+..+...+..+..+....+..+..++.+.+..|.
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 2222222222222222222222222222222222222
Q ss_pred -------------------------CCcCCC-hhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCc
Q 046279 117 -------------------------FHGEVP-EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 117 -------------------------l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
..+..| ..|..+++|+.|++++|++++.-+.+|..+..+++|.|..|+|..+-.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 222223 457889999999999999998888999999999999999999987777
Q ss_pred hhhhcCCCCCeEEcccccccccCCC
Q 046279 171 EQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
..|.++..|+.|+|.+|+|+...|.
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecc
Confidence 8899999999999999999977664
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.4e-21 Score=169.30 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=138.5
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee---
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY--- 85 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~--- 85 (300)
+|..-.++++|+|++|+|+......| ..+.+|..|.|++|+++ .+|...|..+++|+.|++..|+|....++.+
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCceEEeeccccccccccccc--cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 45555678888888888887666666 77889999999999998 9998889999999999999988754322221
Q ss_pred --------------------------eeeEEEeecCc---hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeC
Q 046279 86 --------------------------LDSVTVAMKGQ---DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNL 136 (300)
Q Consensus 86 --------------------------l~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 136 (300)
++.+++..+.+ .....-+++.|+.|+||.|.|....++.++..++|++|+|
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 12222222222 2223334666667777777776666666666777777777
Q ss_pred CCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCC
Q 046279 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGE 216 (300)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~ 216 (300)
+.|+|+...+..|..+..|+.|+|++|.++..-...|..+.+|++|||++|.+++.+.... ..|..+.......+.||
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTGN 402 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecCc
Confidence 7777776666667777777777777777776666667778888888888888887776542 12333344444555555
Q ss_pred CC
Q 046279 217 PL 218 (300)
Q Consensus 217 ~~ 218 (300)
.+
T Consensus 403 ql 404 (873)
T KOG4194|consen 403 QL 404 (873)
T ss_pred ee
Confidence 44
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=3.2e-20 Score=165.86 Aligned_cols=185 Identities=26% Similarity=0.357 Sum_probs=144.5
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc-
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF- 83 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~- 83 (300)
-||+.+..|..|+.||||+|+++. .|..+ ...+++-+|+||+|+|. +||..+|.+++.|-.||+++|++..+|..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~E-vP~~L--E~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLRE-VPTNL--EYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred CCCchhcccccceeeecchhhhhh-cchhh--hhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 478888999999999999999976 67776 66788999999999998 99999999999999999999988766532
Q ss_pred ---eeeeeEEEeecCc----------------------------hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCC
Q 046279 84 ---YYLDSVTVAMKGQ----------------------------DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLK 132 (300)
Q Consensus 84 ---~~l~~~~~~~~~~----------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 132 (300)
..+..+.++.+.+ .+.....+.+|..+|+|.|++. ..|+.+..+++|+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLR 248 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhh
Confidence 1222222222111 1223455788889999999988 7888899999999
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccc-cCCCC
Q 046279 133 VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRG-RIPRG 196 (300)
Q Consensus 133 ~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~-~~p~~ 196 (300)
.|+||+|+|+ .+.-..+...+|++|++|.|+++ .+|..+..+++|+.|.+.+|+++- -+|++
T Consensus 249 rLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 249 RLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred eeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 9999999988 55555667788899999999988 788889899999999998888752 35554
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=4e-20 Score=140.47 Aligned_cols=161 Identities=23% Similarity=0.355 Sum_probs=141.7
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeE
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSV 89 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~ 89 (300)
+..+.+.+.|.||+|+++. +|..+ +.+.+|+.|++++|+|. .+|.+ ++.+++|++|+++-|++..++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppni--a~l~nlevln~~nnqie-~lp~~-issl~klr~lnvgmnrl~~lpr------- 96 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNI--AELKNLEVLNLSNNQIE-ELPTS-ISSLPKLRILNVGMNRLNILPR------- 96 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcH--HHhhhhhhhhcccchhh-hcChh-hhhchhhhheecchhhhhcCcc-------
Confidence 3467788999999999987 56666 78999999999999999 99987 7899999999999988865543
Q ss_pred EEeecCchhHHHHhcccccEEEccCCcCCc-CCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 90 TVAMKGQDVLLYKILIIFRTLDFSSNRFHG-EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 90 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
-|+.++.|+.|||++|++.. .+|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- .
T Consensus 97 ----------gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 97 ----------GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred ----------ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 24568899999999999974 47888999999999999999999 88999999999999999999988 7
Q ss_pred CchhhhcCCCCCeEEcccccccccCC
Q 046279 169 IPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
+|..++.++.|++|.+.+|+++-..|
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecCh
Confidence 89999999999999999999994444
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.70 E-value=6.5e-17 Score=152.40 Aligned_cols=118 Identities=38% Similarity=0.636 Sum_probs=103.1
Q ss_pred cccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcc
Q 046279 106 IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLS 185 (300)
Q Consensus 106 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 185 (300)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCC--CCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 186 YNQLRGRIPRGNQ--FNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 186 ~N~l~~~~p~~~~--~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+|.++|.+|.... ........+.+|..+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1233445677888888766544553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.4e-18 Score=155.57 Aligned_cols=183 Identities=26% Similarity=0.365 Sum_probs=106.4
Q ss_pred ccchhhhcCCCCCEEEccCCcccCC------------------------CCCCCCCCCCCCCcEEEcccCCCcccCcHHH
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGP------------------------LCKSNSTFPFQALRIIDLSHNEFTGSLPRTI 60 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~ 60 (300)
.+|+.++.+.+|++|.+++|++... +|..+ ..+..|..||||+|++. ..|.+
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di--F~l~dLt~lDLShNqL~-EvP~~- 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI--FRLKDLTILDLSHNQLR-EVPTN- 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh--cccccceeeecchhhhh-hcchh-
Confidence 4677777777777777777775431 34444 45666667777777776 66665
Q ss_pred HhCcccccccccccccccccCCce--------eeeeEEEeecCchhHHHHhcccccEEEccCCcCCc-------------
Q 046279 61 FVSMEAMKIVDEMEFGLQYIGGFY--------YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHG------------- 119 (300)
Q Consensus 61 ~~~l~~L~~L~l~~n~l~~l~~~~--------~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------- 119 (300)
+....++-.|++++|+|..+|... +++..++....+++.. ..+..|++|+|++|.+..
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 455666666777777776665432 2333333333333332 235556666666664431
Q ss_pred ------------CCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccc
Q 046279 120 ------------EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 120 ------------~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 187 (300)
.+|.++..+.+|..+|+|.|.+. ..|+.+.++++|+.|+||+|+|+ ++.-......+|++|++|.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccc
Confidence 24444555556666666666666 55666666666666666666666 33333444556666666666
Q ss_pred cccccCCC
Q 046279 188 QLRGRIPR 195 (300)
Q Consensus 188 ~l~~~~p~ 195 (300)
+++ .+|.
T Consensus 279 QLt-~LP~ 285 (1255)
T KOG0444|consen 279 QLT-VLPD 285 (1255)
T ss_pred hhc-cchH
Confidence 666 5554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=1.1e-18 Score=148.66 Aligned_cols=197 Identities=23% Similarity=0.221 Sum_probs=156.2
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
++|+.++.+.+|..|+.++|.+.. +++.+ +.+..|+.++..+|+++ ++|++ +.++.++..+++.+|.+..++...
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i--~~~~~l~dl~~~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~ 179 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKE-LPDSI--GRLLDLEDLDATNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENH 179 (565)
T ss_pred hccHHHhhhhhhhhhhccccceee-cCchH--HHHhhhhhhhccccccc-cCchH-HHHHHHHHHhhccccchhhCCHHH
Confidence 589999999999999999999976 56666 77889999999999999 88877 678889999999999987765422
Q ss_pred ----eeeeEEEeecC--chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCcccc-CCCCCCE
Q 046279 85 ----YLDSVTVAMKG--QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLG-NMTALES 157 (300)
Q Consensus 85 ----~l~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~ 157 (300)
.+..+++..+. .-+...+.+.+|+.|+|..|++. .+| .|.++..|.+|+++.|+|. .+|.... +++++..
T Consensus 180 i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 23333333322 22334456788888999999998 666 6889999999999999998 6666554 8999999
Q ss_pred EeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCc
Q 046279 158 LDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNI 211 (300)
Q Consensus 158 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 211 (300)
||+.+|+++ +.|+.+.-+.+|++||+|+|.+++..++.+.+ .+..+...|||
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 999999999 78999999999999999999999776665444 55555556665
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=132.19 Aligned_cols=163 Identities=26% Similarity=0.442 Sum_probs=138.3
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc--ccCC
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ--YIGG 82 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~--~l~~ 82 (300)
.+|+.++.+.+|+.|++++|+|.. +|..+ +.+++|+.|+++-|++. .+|.+ |+.++.|+.||+.+|++. .+++
T Consensus 47 ~vppnia~l~nlevln~~nnqie~-lp~~i--ssl~klr~lnvgmnrl~-~lprg-fgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEE-LPTSI--SSLPKLRILNVGMNRLN-ILPRG-FGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhh-cChhh--hhchhhhheecchhhhh-cCccc-cCCCchhhhhhccccccccccCCc
Confidence 478899999999999999999986 78887 78999999999999998 99988 999999999999999884 3443
Q ss_pred ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCC
Q 046279 83 FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 162 (300)
. |..+..|+.|+|++|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.++.|++|++.+
T Consensus 122 n-----------------ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 122 N-----------------FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred c-----------------hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 3 234777889999999998 78899999999999999999988 7899999999999999999
Q ss_pred CccCccCchhhhcCC---CCCeEEccccccccc
Q 046279 163 NKLHGIIPEQLLAVT---ALASLNLSYNQLRGR 192 (300)
Q Consensus 163 N~l~~~~~~~l~~l~---~L~~L~l~~N~l~~~ 192 (300)
|+++ .+|..++.+. +=+.+.+.+|++...
T Consensus 183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 183 NRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred ceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 9998 7787777653 223455666665433
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=2.7e-17 Score=140.19 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=55.4
Q ss_pred ccchhhh-cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc
Q 046279 5 TFPCWLG-SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 5 ~ip~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
.+|.+.+ +++++.+|||.+|+++. .|..+ +.+.+|++||+|+|.|+ .+|.+ ++++ +|+.|.+.+|.+
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke-~Pde~--clLrsL~rLDlSNN~is-~Lp~s-Lgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEI--CLLRSLERLDLSNNDIS-SLPYS-LGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhHHHHhcccccceeeecccccccc-CchHH--HHhhhhhhhcccCCccc-cCCcc-cccc-eeeehhhcCCch
Confidence 3677666 88999999999999976 67777 77888999999999998 78876 6778 888888888765
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=2e-17 Score=140.61 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=152.2
Q ss_pred CccccchhhhcCCCCCEEEccC-CcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRS-NRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYI 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l 80 (300)
|+-+-|++|.++++|..|-+-+ |+|+...-..| .++.+|+.|.+.-|++. -++.+.|..++++..|.+.+|.++.+
T Consensus 103 Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 103 ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhh
Confidence 5666799999999988887665 99988555555 78888999999989888 88888888888888888888776544
Q ss_pred CCceeee-----eEEEe---------------------------------------------------------------
Q 046279 81 GGFYYLD-----SVTVA--------------------------------------------------------------- 92 (300)
Q Consensus 81 ~~~~~l~-----~~~~~--------------------------------------------------------------- 92 (300)
....+.+ .+.+.
T Consensus 180 ~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d 259 (498)
T KOG4237|consen 180 CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED 259 (498)
T ss_pred ccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence 3211100 00000
Q ss_pred --ecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCc
Q 046279 93 --MKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 93 --~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
...-+...|..+++|+.|+|++|.+++.-+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|
T Consensus 260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 260 FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 000111246678999999999999998889999999999999999999986666788999999999999999999999
Q ss_pred hhhhcCCCCCeEEcccccccccCCC
Q 046279 171 EQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
.+|..+.+|.+|++-.|++.+.+--
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccccccceeeeeehccCcccCccch
Confidence 9999999999999999999877653
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-16 Score=148.13 Aligned_cols=200 Identities=23% Similarity=0.326 Sum_probs=129.6
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
.+|+|++.+.+|+.|+..+|.++. +|..+ ...++|+.|++.+|.+. .+|.. ...+..|+.|++..|++..++...
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~-lp~ri--~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVA-LPLRI--SRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred cchHHHHhcccceEecccchhHHh-hHHHH--hhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHH
Confidence 478899999999999999998853 34433 33444444444444444 44432 233444444444444444333211
Q ss_pred ------------------------------eeeeEEEeecCchhH---HHHhcccccEEEccCCcCCcCCChhhcCCCCC
Q 046279 85 ------------------------------YLDSVTVAMKGQDVL---LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSL 131 (300)
Q Consensus 85 ------------------------------~l~~~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 131 (300)
.+..+.+..+..... .+.+..+|+.|+|++|++.......+.++..|
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence 111112222222222 33456788889999998885555677888888
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccc-cCCCCCCCCCCCCCcccCC
Q 046279 132 KVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRG-RIPRGNQFNTFDNNSYIGN 210 (300)
Q Consensus 132 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~-~~p~~~~~~~~~~~~~~~n 210 (300)
++|+||+|+++ .+|+.+.++..|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|.......++.+.+.||
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 88999999888 77888888888888888888887 667 67888999999999998873 3344333356777777777
Q ss_pred cC
Q 046279 211 IH 212 (300)
Q Consensus 211 ~~ 212 (300)
.+
T Consensus 487 ~~ 488 (1081)
T KOG0618|consen 487 TR 488 (1081)
T ss_pred cc
Confidence 64
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.8e-14 Score=136.67 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=80.9
Q ss_pred cccccccccccccccCCce-eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC
Q 046279 66 AMKIVDEMEFGLQYIGGFY-YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144 (300)
Q Consensus 66 ~L~~L~l~~n~l~~l~~~~-~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 144 (300)
+|+.|++++|++..++... .+..+.+..+.+.. +.....+|+.|++++|.+++ +|.. .++|+.|++++|.++ .
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhcccccc-CcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-C
Confidence 5667777777766655321 12222222222221 12234578888888888884 5543 357888899999888 4
Q ss_pred CCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 145 IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 145 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+|... .+|+.|++++|+|+ .+|..+..+++|+.|++++|+|++..|.
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 66532 46788899999988 6788888999999999999999987665
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=2.8e-14 Score=135.79 Aligned_cols=55 Identities=40% Similarity=0.634 Sum_probs=28.2
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|+.|++++|.++ .+|..+. ++|+.|++++|+|+ .+|..+ .++|+.|++++|+++
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 4555555555554 2343332 45566666666555 344433 245566666666555
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=6.9e-14 Score=132.68 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=40.4
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
++|+.+. ++|+.|++++|+++. +|.. +++|++|++++|.++ .+|.. .++|+.|++.+|.+..++
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~-LP~l-----p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTS-LPAL-----PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTHLP 278 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCC-CCCC-----CCCCcEEEecCCccC-cccCc----ccccceeeccCCchhhhh
Confidence 4677664 367888888888775 4432 467788888888777 66632 245555555555554443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=4.5e-14 Score=134.41 Aligned_cols=169 Identities=22% Similarity=0.327 Sum_probs=111.2
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce-
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY- 84 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~- 84 (300)
+|..+. ++|+.|+|++|+++. +|..+ .++|+.|++++|.++ .+|..+. .+|+.|++++|++..++...
T Consensus 193 LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l----~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 193 IPACIP--EQITTLILDNNELKS-LPENL----QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP 261 (754)
T ss_pred CCcccc--cCCcEEEecCCCCCc-CChhh----ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh
Confidence 555442 468888888888875 55544 357888888888888 7776532 46788888888887665321
Q ss_pred -eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCC
Q 046279 85 -YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 85 -~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 163 (300)
.+..+.++.+.+....-....+|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N 335 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGEN 335 (754)
T ss_pred CCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCC
Confidence 23333333333221111113467788888887773 444332 46777788888877 4554432 67899999999
Q ss_pred ccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 164 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
.+++ +|..+ .++|+.|++++|+|+ .+|.
T Consensus 336 ~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~ 363 (754)
T PRK15370 336 ALTS-LPASL--PPELQVLDVSKNQIT-VLPE 363 (754)
T ss_pred cccc-CChhh--cCcccEEECCCCCCC-cCCh
Confidence 9884 66655 378999999999998 5664
No 19
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=4.6e-13 Score=126.46 Aligned_cols=93 Identities=39% Similarity=0.561 Sum_probs=84.0
Q ss_pred HhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcC-CCCC
Q 046279 102 KILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAV-TALA 180 (300)
Q Consensus 102 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~ 180 (300)
..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+++.+|+.++.+++|+.|+|++|.+++.+|..+... .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 447788999999999999999999999999999999999999999999999999999999999999999988764 4678
Q ss_pred eEEcccccccccCC
Q 046279 181 SLNLSYNQLRGRIP 194 (300)
Q Consensus 181 ~L~l~~N~l~~~~p 194 (300)
.+++++|...|..|
T Consensus 519 ~l~~~~N~~lc~~p 532 (623)
T PLN03150 519 SFNFTDNAGLCGIP 532 (623)
T ss_pred eEEecCCccccCCC
Confidence 89999998776555
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.2e-14 Score=125.17 Aligned_cols=182 Identities=22% Similarity=0.227 Sum_probs=96.9
Q ss_pred cchhhhcCCCCCEEEccCCcccC------CCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccc---cccccccccc
Q 046279 6 FPCWLGSLSELKILVLRSNRFYG------PLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEA---MKIVDEMEFG 76 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~---L~~L~l~~n~ 76 (300)
++..+...++|++|+++++.+.+ .++..+ ..+++|+.|++++|.+.+..+. .+..+.+ |+.|++++|.
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL--TKGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHH--HhcCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCc
Confidence 34445555566666666665542 011122 3345666666666666532322 2333333 6666666655
Q ss_pred ccc---------cCCc-eeeeeEEEeecCch-------hHHHHhcccccEEEccCCcCCcC----CChhhcCCCCCCEEe
Q 046279 77 LQY---------IGGF-YYLDSVTVAMKGQD-------VLLYKILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLN 135 (300)
Q Consensus 77 l~~---------l~~~-~~l~~~~~~~~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ 135 (300)
+.. ++.. ..+..+.+..+.+. ...+..+..|++|++++|.+++. ++..+..+++|++|+
T Consensus 120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 531 1112 23333444333332 12234456777788877777642 223344556777788
Q ss_pred CCCCCCCCC----CCccccCCCCCCEEeCCCCccCccCchhhhc-----CCCCCeEEccccccc
Q 046279 136 LSHNSLTGN----IPASLGNMTALESLDLSFNKLHGIIPEQLLA-----VTALASLNLSYNQLR 190 (300)
Q Consensus 136 ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~N~l~ 190 (300)
+++|.+++. ++..+..+++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 877777633 2334556677778888777776533322221 267777777777775
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=7.2e-13 Score=133.48 Aligned_cols=183 Identities=20% Similarity=0.149 Sum_probs=93.0
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc-cccccCCc-
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF-GLQYIGGF- 83 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n-~l~~l~~~- 83 (300)
+|..+..+++|+.|+|+++.....+|. + ..+++|+.|+|++|.....+|.. +..+++|+.|+++++ .++.++..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC
Confidence 344455566666666665543333442 3 44666666666666544466654 566677777777663 34444332
Q ss_pred --eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhh------------------------------cCCCCC
Q 046279 84 --YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVL------------------------------GNFKSL 131 (300)
Q Consensus 84 --~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------------~~l~~L 131 (300)
..|..+.+..+.....+.....+|++|++++|.+. .+|..+ ...++|
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 22333333332222222233456777777777665 334322 012345
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 132 KVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 132 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 555555555444555556666666666666554333444433 45556666666554333333
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=1.1e-12 Score=132.22 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=56.6
Q ss_pred hcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC---------------------CCEEeCC
Q 046279 103 ILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA---------------------LESLDLS 161 (300)
Q Consensus 103 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~---------------------L~~L~Ls 161 (300)
..++|+.|++++|.....+|..++++++|+.|++++|..-+.+|..+ .+++ |+.|+++
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence 35678888888887777788888888888888888875333555443 3444 4455555
Q ss_pred CCccCccCchhhhcCCCCCeEEccc-cccc
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSY-NQLR 190 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~-N~l~ 190 (300)
+|.++ .+|..+..+++|+.|++++ |.+.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 55554 4566666666677776666 3444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.8e-13 Score=119.51 Aligned_cols=184 Identities=26% Similarity=0.240 Sum_probs=129.8
Q ss_pred ccchhhhcCCCCCEEEccCCcccCC----CCCCCCCCCCCCCcEEEcccCCCcc------cCcHHHHhCccccccccccc
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGP----LCKSNSTFPFQALRIIDLSHNEFTG------SLPRTIFVSMEAMKIVDEME 74 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~------~lp~~~~~~l~~L~~L~l~~ 74 (300)
..+..|..+.+|+.|+++++.++.. ++..+ ...++++.|+++++.+.+ .++ ..+..+++|+.|++++
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSD 90 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccC
Confidence 3556677888899999999998542 33333 456779999999998762 122 2366788999999999
Q ss_pred cccccc-----CCcee---eeeEEEeecCchh-------HHHHhc-ccccEEEccCCcCCcC----CChhhcCCCCCCEE
Q 046279 75 FGLQYI-----GGFYY---LDSVTVAMKGQDV-------LLYKIL-IIFRTLDFSSNRFHGE----VPEVLGNFKSLKVL 134 (300)
Q Consensus 75 n~l~~l-----~~~~~---l~~~~~~~~~~~~-------~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L 134 (300)
|.+... ..... +..+.+..+.... ..+..+ ++|+.|++++|.+++. ++..+..+++|++|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 887521 11112 5555555554431 123345 8899999999999843 34456677899999
Q ss_pred eCCCCCCCCC----CCccccCCCCCCEEeCCCCccCccC----chhhhcCCCCCeEEcccccccc
Q 046279 135 NLSHNSLTGN----IPASLGNMTALESLDLSFNKLHGII----PEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 135 ~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
++++|.+++. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 9999998843 3344556679999999999987543 3445677889999999999874
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=4.1e-14 Score=131.97 Aligned_cols=176 Identities=23% Similarity=0.316 Sum_probs=121.3
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCc---------------------
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSM--------------------- 64 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l--------------------- 64 (300)
+|..+..+.+|+.|++..|.+.- +|... .++++|++|+|..|++. .+|+..+.-+
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~y-ip~~l--e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEY-IPPFL--EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhh-CCCcc--cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 45556666666666666666654 33333 45666666666666665 5555433332
Q ss_pred ----ccccccccccccccc-----cCCceeeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCC
Q 046279 65 ----EAMKIVDEMEFGLQY-----IGGFYYLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLK 132 (300)
Q Consensus 65 ----~~L~~L~l~~n~l~~-----l~~~~~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 132 (300)
+.|+.|.+.+|.+++ +.....|..++++++ .+....+..+..|++|+||||+++ .+|..+..++.|+
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 234444444444421 122334555555555 345666778999999999999999 7889999999999
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccc
Q 046279 133 VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQ 188 (300)
Q Consensus 133 ~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~ 188 (300)
+|...+|++. ..| .+..++.|+.+|+|.|+++...-......++|++||+++|.
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999999 778 68899999999999999986543333333899999999997
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.5e-12 Score=102.41 Aligned_cols=124 Identities=23% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCc
Q 046279 40 QALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHG 119 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 119 (300)
.+++.|+|++|.|+ .+. .+-..+.+|+.|++++|.+..+++. ..++.|++|++++|.++.
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l------------------~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGL------------------PGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----------------------TT--EEE--SS---S
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCc------------------cChhhhhhcccCCCCCCc
Confidence 34555566665555 443 2112344555555555555544432 235667778888888774
Q ss_pred CCChhh-cCCCCCCEEeCCCCCCCCC-CCccccCCCCCCEEeCCCCccCccC---chhhhcCCCCCeEEc
Q 046279 120 EVPEVL-GNFKSLKVLNLSHNSLTGN-IPASLGNMTALESLDLSFNKLHGII---PEQLLAVTALASLNL 184 (300)
Q Consensus 120 ~~~~~~-~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~L~l 184 (300)
+.+.+ ..+++|++|++++|+|... .-..+..+++|+.|++.+|.++... ...+..+|+|+.||-
T Consensus 79 -i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 -ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred -cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 33333 3577888888888887632 1244567788888888888876431 123566788877764
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=5.9e-12 Score=113.30 Aligned_cols=177 Identities=31% Similarity=0.380 Sum_probs=99.0
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCC-CCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce---
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQ-ALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY--- 84 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~--- 84 (300)
.+..++.++.|++.+|.++.. +... ..+. +|+.|++++|.+. .+|.. ...++.|+.|++++|++..++...
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i-~~~~--~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDI-PPLI--GLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hhhcccceeEEecCCcccccC-cccc--ccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhh
Confidence 445567788888888888763 3333 3343 7888888888887 77533 678888888888888887776542
Q ss_pred -eeeeEEEeecCchhHHH--HhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 85 -YLDSVTVAMKGQDVLLY--KILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 85 -~l~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
.+..+.++.+.+..... ..+..|++|++++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|+++
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 12222222222211111 12333555555555322 23344445555555555555554 224455555556666666
Q ss_pred CCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
+|.++...+ +..+.+++.|++++|.+....|
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccccc--ccccCccCEEeccCccccccch
Confidence 666653222 5555566666666666554443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.1e-13 Score=123.02 Aligned_cols=171 Identities=27% Similarity=0.362 Sum_probs=105.7
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee---eeeEE
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY---LDSVT 90 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~---l~~~~ 90 (300)
..-...||+.|++.. +|..+ +.+..|+.+.|..|.+. .+|.. ..++..|..++++.|++..++.... |..+.
T Consensus 75 tdt~~aDlsrNR~~e-lp~~~--~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE-LPEEA--CAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLI 149 (722)
T ss_pred cchhhhhcccccccc-CchHH--HHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhhcCChhhhcCcceeEE
Confidence 334455666666543 44544 44555566666666665 55544 4556666666666666555543221 12222
Q ss_pred EeecCc--hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 91 VAMKGQ--DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 91 ~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
...+.+ .+...+....|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|+.+.. -.|..||+|.|+++ .
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence 222211 1112234667777888888877 56777778888888888888877 56666663 35777888888887 7
Q ss_pred CchhhhcCCCCCeEEcccccccccCC
Q 046279 169 IPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
+|-.|..+..|++|-|.+|+++ ..|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CCh
Confidence 7888888888888888888887 444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=6.5e-12 Score=98.78 Aligned_cols=121 Identities=26% Similarity=0.308 Sum_probs=41.8
Q ss_pred cccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhc
Q 046279 47 LSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLG 126 (300)
Q Consensus 47 Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 126 (300)
|..+.|. .++. +.+..+++.|++.+|.|..+..+. ..+.+|+.||+++|.++.. +.+.
T Consensus 4 lt~~~i~-~~~~--~~n~~~~~~L~L~~n~I~~Ie~L~-----------------~~l~~L~~L~Ls~N~I~~l--~~l~ 61 (175)
T PF14580_consen 4 LTANMIE-QIAQ--YNNPVKLRELNLRGNQISTIENLG-----------------ATLDKLEVLDLSNNQITKL--EGLP 61 (175)
T ss_dssp -----------------------------------S-------------------TT-TT--EEE-TTS--S----TT--
T ss_pred ccccccc-cccc--cccccccccccccccccccccchh-----------------hhhcCCCEEECCCCCCccc--cCcc
Confidence 4455555 5553 556678899999999988775542 1267889999999999843 3477
Q ss_pred CCCCCCEEeCCCCCCCCCCCccc-cCCCCCCEEeCCCCccCcc-CchhhhcCCCCCeEEccccccc
Q 046279 127 NFKSLKVLNLSHNSLTGNIPASL-GNMTALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.++.|+.|++++|.|+ .+.+.+ ..+++|++|++++|+|.+. .-..+..+++|+.|++.+|+++
T Consensus 62 ~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 8899999999999998 454444 4689999999999999753 2256778999999999999997
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=5.9e-12 Score=113.31 Aligned_cols=162 Identities=27% Similarity=0.411 Sum_probs=127.4
Q ss_pred ccchhhhcCC-CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 5 TFPCWLGSLS-ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 5 ~ip~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
.+|...+.++ +|+.|++++|.+.. +|..+ ..+++|+.|++++|+++ .+|.. ....+.|+.|++++|.+..++..
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~--~~l~~L~~L~l~~N~l~-~l~~~-~~~~~~L~~L~ls~N~i~~l~~~ 204 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIES-LPSPL--RNLPNLKNLDLSFNDLS-DLPKL-LSNLSNLNNLDLSGNKISDLPPE 204 (394)
T ss_pred cCccccccchhhcccccccccchhh-hhhhh--hccccccccccCCchhh-hhhhh-hhhhhhhhheeccCCccccCchh
Confidence 4666777774 99999999999986 44445 77899999999999999 88864 34889999999999999888774
Q ss_pred e----eeeeEEEeecC--chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCE
Q 046279 84 Y----YLDSVTVAMKG--QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALES 157 (300)
Q Consensus 84 ~----~l~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 157 (300)
. .+..+.+..+. ........+.++..+.+.+|++. ..+..++.+++++.|++++|.++ .++. ++.+.+++.
T Consensus 205 ~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~ 281 (394)
T COG4886 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRE 281 (394)
T ss_pred hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCE
Confidence 1 24445555552 23444566888888999999987 44677889999999999999999 4444 889999999
Q ss_pred EeCCCCccCccCchhhh
Q 046279 158 LDLSFNKLHGIIPEQLL 174 (300)
Q Consensus 158 L~Ls~N~l~~~~~~~l~ 174 (300)
|++++|.+....+....
T Consensus 282 L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 282 LDLSGNSLSNALPLIAL 298 (394)
T ss_pred EeccCccccccchhhhc
Confidence 99999999876665443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=7.1e-13 Score=109.71 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=104.4
Q ss_pred CCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCC
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFH 118 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 118 (300)
...|+.+|||+|.|+ .+.++ ..-.+.++.|++++|++..+.++ ..+++|+.||||+|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~nL------------------a~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQNL------------------AELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehhh------------------hhcccceEeecccchhH
Confidence 466888999999988 78766 67788899999999888766554 44778899999999988
Q ss_pred cCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc-CchhhhcCCCCCeEEccccccccc
Q 046279 119 GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
.+..+-..+.+++.|.|++|.|.. -..+..+-+|..||+++|+|... -...++++|.|+++.|.+|++.+.
T Consensus 343 -~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 343 -ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 566666778899999999999873 24567788899999999998743 234578899999999999999843
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.5e-13 Score=119.25 Aligned_cols=169 Identities=24% Similarity=0.387 Sum_probs=124.1
Q ss_pred EEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC-------ceeeeeEE
Q 046279 18 ILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG-------FYYLDSVT 90 (300)
Q Consensus 18 ~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~-------~~~l~~~~ 90 (300)
.|.|++-++.. +|..-....+.--...||+.|++. .+|.. +..+..|+.+.+..|.+..++. +.+++...
T Consensus 54 ~l~Ls~rrlk~-fpr~a~~~~ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKE-FPRGAASYDLTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhc-CCCccccccccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 45566666554 333221144556667899999999 99988 7889999999999999866653 22333222
Q ss_pred EeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCc
Q 046279 91 VAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 91 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
+....... ....+ -|+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|
T Consensus 131 NqlS~lp~-~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 131 NQLSHLPD-GLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred chhhcCCh-hhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCC
Confidence 22222222 22222 3788889999998 78888888899999999999998 77888999999999999999988 567
Q ss_pred hhhhcCCCCCeEEcccccccccCCCC
Q 046279 171 EQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
..+..++ |..||+++|+++ .+|-.
T Consensus 206 ~El~~Lp-Li~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 206 EELCSLP-LIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred HHHhCCc-eeeeecccCcee-ecchh
Confidence 7777654 889999999999 78864
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=2e-12 Score=107.07 Aligned_cols=135 Identities=25% Similarity=0.235 Sum_probs=108.8
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDS 88 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~ 88 (300)
.+..-+.|+.||||+|.|+. +.++. .-++.++.|++|+|.|. .+.. +..+++|+.||+++|.+..+.+..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~-iDESv--KL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh---- 348 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ-IDESV--KLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAECVGWH---- 348 (490)
T ss_pred ecchHhhhhhccccccchhh-hhhhh--hhccceeEEecccccee-eehh--hhhcccceEeecccchhHhhhhhH----
Confidence 33344679999999999986 45555 55799999999999998 7664 788999999999999987765432
Q ss_pred EEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC-CCccccCCCCCCEEeCCCCccCc
Q 046279 89 VTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN-IPASLGNMTALESLDLSFNKLHG 167 (300)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 167 (300)
..+-+++.|.|++|.+... ..+..+-+|..||+++|+|... --..++++|.|+++.|.+|.+.+
T Consensus 349 -------------~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 349 -------------LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -------------hhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 3477899999999988632 4567788999999999999843 23468999999999999999984
Q ss_pred c
Q 046279 168 I 168 (300)
Q Consensus 168 ~ 168 (300)
.
T Consensus 414 ~ 414 (490)
T KOG1259|consen 414 S 414 (490)
T ss_pred c
Confidence 3
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.3e-12 Score=109.21 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=109.9
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccC-c-HHHHhCcccccccccccccccccCC------c
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSL-P-RTIFVSMEAMKIVDEMEFGLQYIGG------F 83 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~l-p-~~~~~~l~~L~~L~l~~n~l~~l~~------~ 83 (300)
++.+|+.+.|.+..+....... ....+++++.||||.|-+. .+ | ..+...+++|+.|+++.|.+....+ .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5667777777777665322111 1145677777777777665 22 1 2345667777777777777643322 1
Q ss_pred eeeeeEEEeecCchh----HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEE
Q 046279 84 YYLDSVTVAMKGQDV----LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI-PASLGNMTALESL 158 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L 158 (300)
..+..+.+..+++.- .....+++|+.|+|.+|.....-.....-+..|+.|||++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 123344444444432 23344788888888888532233333445677888888888876332 1345678888888
Q ss_pred eCCCCccCcc-Cchh-----hhcCCCCCeEEcccccccccCCC
Q 046279 159 DLSFNKLHGI-IPEQ-----LLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 159 ~Ls~N~l~~~-~~~~-----l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++.+.+.+. .|+. ...+++|++|++..|++. ..+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~s 318 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRS 318 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccc
Confidence 8888887754 3332 345788888888888886 4443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.3e-10 Score=75.43 Aligned_cols=59 Identities=36% Similarity=0.547 Sum_probs=30.2
Q ss_pred cccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCc
Q 046279 106 IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK 164 (300)
Q Consensus 106 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 164 (300)
+|++|++++|+++...+..|.++++|++|++++|.++...|+.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444455555555555555555554444445555555555555554
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=8.6e-11 Score=76.30 Aligned_cols=61 Identities=43% Similarity=0.568 Sum_probs=56.4
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccc
Q 046279 129 KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189 (300)
Q Consensus 129 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 189 (300)
++|++|++++|+++...++.|..+++|++|++++|.++...++.|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966667899999999999999999988888999999999999999986
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=6.7e-11 Score=99.80 Aligned_cols=180 Identities=20% Similarity=0.160 Sum_probs=96.1
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCC--CCCCCCCcEEEcccCCCcccCcHHH-------------HhCcccccccccc
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNS--TFPFQALRIIDLSHNEFTGSLPRTI-------------FVSMEAMKIVDEM 73 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~lp~~~-------------~~~l~~L~~L~l~ 73 (300)
++...+.|++||||+|.+....+..+. ......|+.|.|.+|.+. ...... ...-+.|+.+...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 344566777777777777643333320 123567777777777765 221111 2234456666666
Q ss_pred cccccccCCc---------eeeeeEEEeecCchhH-------HHHhcccccEEEccCCcCCcC----CChhhcCCCCCCE
Q 046279 74 EFGLQYIGGF---------YYLDSVTVAMKGQDVL-------LYKILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKV 133 (300)
Q Consensus 74 ~n~l~~l~~~---------~~l~~~~~~~~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~ 133 (300)
.|++..-+.. ..+..+.+..+++.+. .+..+++|+.|||.+|.++.. +...++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 6666443321 1234444444443322 234466666666666666533 2334455666666
Q ss_pred EeCCCCCCCCCCCccc-----cCCCCCCEEeCCCCccCcc----CchhhhcCCCCCeEEcccccc
Q 046279 134 LNLSHNSLTGNIPASL-----GNMTALESLDLSFNKLHGI----IPEQLLAVTALASLNLSYNQL 189 (300)
Q Consensus 134 L~ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l 189 (300)
|++++|.+...-...+ ...++|+.|.+.+|.|+.. +.......+.|..|+|++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666654322221 1346666666666666532 222233456666666666666
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.5e-10 Score=97.44 Aligned_cols=182 Identities=20% Similarity=0.183 Sum_probs=110.9
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc---------cc
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ---------YI 80 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~---------~l 80 (300)
...+++++.||||.|-++...+-.-....+++|+.|+|+.|.+.-......-..+++|+.|.++.+++. ..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 345667777777777665432211111346677777777776652222222334566666666666653 11
Q ss_pred CCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC-ChhhcCCCCCCEEeCCCCCCCCC-CCcc-----ccCCC
Q 046279 81 GGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV-PEVLGNFKSLKVLNLSHNSLTGN-IPAS-----LGNMT 153 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~-~p~~-----~~~l~ 153 (300)
|++..+....+..-.........+..|++|||++|++-... -...+.++.|+.|+++.+.+... .|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 22222211111111122223345778999999999987432 24567899999999999998743 3332 34678
Q ss_pred CCCEEeCCCCccCcc-CchhhhcCCCCCeEEcccccccc
Q 046279 154 ALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 154 ~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
+|++|+++.|++.+. .-..+..+++|+.|.+..|.++.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 999999999999632 22345667888999999999873
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=3e-09 Score=90.02 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=111.0
Q ss_pred CCCCcEEEcccCCCcccCcH---HHHhCcccccccccccccccccC------------------CceeeeeEEEeecCch
Q 046279 39 FQALRIIDLSHNEFTGSLPR---TIFVSMEAMKIVDEMEFGLQYIG------------------GFYYLDSVTVAMKGQD 97 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~---~~~~~l~~L~~L~l~~n~l~~l~------------------~~~~l~~~~~~~~~~~ 97 (300)
.++|++||||.|.+...-+. .++..+..|++|.+.+|+++... ....+..+.+..+...
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 56899999999998744443 34677889999999999885432 2224555555555443
Q ss_pred h-------HHHHhcccccEEEccCCcCCcC----CChhhcCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeCCC
Q 046279 98 V-------LLYKILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDLSF 162 (300)
Q Consensus 98 ~-------~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~ 162 (300)
. ..++..+.|+.+.++.|.+... +...+..+++|+.||+.+|.++.. +...+..++.|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 2456678899999999988633 234567889999999999998743 345667788999999999
Q ss_pred CccCccCchhhh-----cCCCCCeEEccccccc
Q 046279 163 NKLHGIIPEQLL-----AVTALASLNLSYNQLR 190 (300)
Q Consensus 163 N~l~~~~~~~l~-----~l~~L~~L~l~~N~l~ 190 (300)
|.+...-...+. ..|+|+.+++.+|.++
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 998866544432 4688999999999886
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.75 E-value=3.1e-10 Score=104.17 Aligned_cols=160 Identities=25% Similarity=0.336 Sum_probs=115.4
Q ss_pred chhhhcCCCCCEEEccCCcccCC-------------CC---------------CCC-CCCCCCCCcEEEcccCCCcccCc
Q 046279 7 PCWLGSLSELKILVLRSNRFYGP-------------LC---------------KSN-STFPFQALRIIDLSHNEFTGSLP 57 (300)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~i~~~-------------~~---------------~~~-~~~~l~~L~~L~Ls~n~l~~~lp 57 (300)
|-.|..+++|++|.|.++.+... ++ ..+ .....-.|.+.+.++|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 55677889999999999887531 00 000 0011345777788888887 666
Q ss_pred HHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCCh-hhcCCCCCCEEeC
Q 046279 58 RTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPE-VLGNFKSLKVLNL 136 (300)
Q Consensus 58 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l 136 (300)
.+ +.-++.++.|++++|++..... +..++.|++|||+.|.+. .+|. ...++. |+.|++
T Consensus 181 ~S-Lqll~ale~LnLshNk~~~v~~------------------Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 181 ES-LQLLPALESLNLSHNKFTKVDN------------------LRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HH-HHHHHHhhhhccchhhhhhhHH------------------HHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 54 7788889999999988865542 355888999999999998 4443 233344 999999
Q ss_pred CCCCCCCCCCccccCCCCCCEEeCCCCccCcc-CchhhhcCCCCCeEEccccccc
Q 046279 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
++|.++.. ..+.++.+|+.||++.|-|.+. --..++.+..|+.|+|.+|++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998833 3577899999999999988753 1233566788999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.9e-09 Score=97.59 Aligned_cols=170 Identities=25% Similarity=0.275 Sum_probs=88.7
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee---e
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY---L 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~---l 86 (300)
++.+++|+.|++.+|.|..... .+ ..+++|++|++++|.|+ .+.. +..++.|+.|++.+|.+..+.+... +
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l--~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LL--SSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhccc-ch--hhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccCCccchhh
Confidence 5667788888888888876332 13 45788888888888887 5543 5667778888888888876665432 1
Q ss_pred eeEEEeecCchhHHH---HhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC--CCEEeCC
Q 046279 87 DSVTVAMKGQDVLLY---KILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA--LESLDLS 161 (300)
Q Consensus 87 ~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~--L~~L~Ls 161 (300)
..+.+..+.+..... ..+.+++.+++.+|.+... ..+..+..+..+++..|.++.. ..+..+.. |+.++++
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLS 240 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcc
Confidence 222222222221111 3333444444444443311 1111222222234444444311 11112222 5666666
Q ss_pred CCccCccCchhhhcCCCCCeEEccccccc
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|.+. ..+..+..+..+..+++.+|.+.
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCccc-cccccccccccccccchhhcccc
Confidence 66665 33344555666666666666665
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.67 E-value=9.3e-10 Score=101.11 Aligned_cols=149 Identities=24% Similarity=0.323 Sum_probs=99.3
Q ss_pred CCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc-----------cccCC-cee--eeeEEEeecCch--h
Q 046279 35 STFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL-----------QYIGG-FYY--LDSVTVAMKGQD--V 98 (300)
Q Consensus 35 ~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l-----------~~l~~-~~~--l~~~~~~~~~~~--~ 98 (300)
...++.+|+.|.+.++.+. ..- ++..--.+|+.|.-.+ .+ .++.+ ..| |...+.+++.+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~-~~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLS-TAK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred eeccccceeeEEecCcchh-hhh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 3388999999999999987 321 1111112333332211 11 11111 112 223334444432 3
Q ss_pred HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCC
Q 046279 99 LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTA 178 (300)
Q Consensus 99 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 178 (300)
.....++.++.|||++|+++.. ..+..+++|++||+++|.+. .+|..-..-..|+.|.+++|.++.. -.+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhh
Confidence 3456689999999999999854 37888999999999999998 5564322234599999999999843 23788999
Q ss_pred CCeEEcccccccc
Q 046279 179 LASLNLSYNQLRG 191 (300)
Q Consensus 179 L~~L~l~~N~l~~ 191 (300)
|+.||+++|-|.+
T Consensus 256 L~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE 268 (1096)
T ss_pred hhccchhHhhhhc
Confidence 9999999999884
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.66 E-value=1.5e-09 Score=80.11 Aligned_cols=112 Identities=27% Similarity=0.405 Sum_probs=81.2
Q ss_pred cccccEEEccCCcCCcCCChhh-cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeE
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVL-GNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 182 (300)
...|+..+|++|.+.. .|+.| ..++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 4456778899999884 44444 45568899999999998 77888999999999999999988 677778788889999
Q ss_pred EcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 183 NLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 183 ~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
+..+|.+. .+|.....+.... -..+..+|+...|..
T Consensus 129 ds~~na~~-eid~dl~~s~~~a-----l~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPA-----LIKLGNEPLGDETKK 164 (177)
T ss_pred cCCCCccc-cCcHHHhccccHH-----HHHhcCCcccccCcc
Confidence 99999887 6665432222222 223344555555543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=6e-09 Score=94.36 Aligned_cols=169 Identities=24% Similarity=0.264 Sum_probs=119.1
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC--ce---
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG--FY--- 84 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~--~~--- 84 (300)
+..+++|++|++++|.|+...+- ..++.|+.|++++|.|+ .+.. +..+..|+.+++++|.+..+.. ..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDELSELI 186 (414)
T ss_pred hhhhhcchheeccccccccccch----hhccchhhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhhhhhcc
Confidence 66799999999999999875433 45778999999999998 7764 6669999999999999987766 12
Q ss_pred eeeeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCC--CCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 85 YLDSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKS--LKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 85 ~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
.+..+.+..+.+.. .....+..+..+++..|.++..-+ +..+.. |+.+++++|.+. ..+..+..+..+..|+++
T Consensus 187 ~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 187 SLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLS 263 (414)
T ss_pred chHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchh
Confidence 22222222222211 122334455556888888873322 222333 899999999998 555667788999999999
Q ss_pred CCccCccCchhhhcCCCCCeEEccccccc
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|++...- .+...+.+..+....|.+.
T Consensus 264 ~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 264 SNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred hccccccc--cccccchHHHhccCcchhc
Confidence 99987542 2445566677777777765
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=7.4e-09 Score=76.48 Aligned_cols=90 Identities=26% Similarity=0.333 Sum_probs=67.9
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEE
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 183 (300)
.+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+. ++|-.+-.-...-..+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence 456678888888888 67777999999999999999998 67777777889999999999887 4443333223333456
Q ss_pred cccccccccCCCC
Q 046279 184 LSYNQLRGRIPRG 196 (300)
Q Consensus 184 l~~N~l~~~~p~~ 196 (300)
+.++++.+..+..
T Consensus 153 lgnepl~~~~~~k 165 (177)
T KOG4579|consen 153 LGNEPLGDETKKK 165 (177)
T ss_pred hcCCcccccCccc
Confidence 6778888777764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=5.3e-07 Score=75.21 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=43.4
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
-+.+||.|++|+|+.|.+...+-..- .+..+|++|.|.+..+...-..+....++.++.|+++.|++
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 34577777777777777765432221 34567777777777776554555566777777777777754
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.21 E-value=1.1e-06 Score=85.72 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=55.0
Q ss_pred hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCC
Q 046279 98 VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVT 177 (300)
Q Consensus 98 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 177 (300)
..+|..++.|+.|||++|.-.+.+|..++.+-+|++|++++..++ .+|..++++..|.+|++..+.-...+|.....++
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 344555666666666666555566666666666666666666666 5666666666666666666554444455555566
Q ss_pred CCCeEEccccc
Q 046279 178 ALASLNLSYNQ 188 (300)
Q Consensus 178 ~L~~L~l~~N~ 188 (300)
+|++|.+..-.
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 66666665443
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=7e-06 Score=72.75 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=44.9
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc-cccccC
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF-GLQYIG 81 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n-~l~~l~ 81 (300)
+..+.+++.|++++|.++. +| .+ ..+|+.|++++|.--..+|..+ ..+|+.|++.+| .+..++
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP-~L----P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP-VL----PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC-CC----CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc
Confidence 4457899999999998876 45 33 3579999999854333777543 357888999887 555443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.2e-06 Score=52.38 Aligned_cols=36 Identities=42% Similarity=0.696 Sum_probs=16.0
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccC
Q 046279 130 SLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 130 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 166 (300)
+|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555544 33333444444444444444444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.8e-06 Score=51.53 Aligned_cols=36 Identities=42% Similarity=0.578 Sum_probs=15.9
Q ss_pred CCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 154 ALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444455555444444
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2e-07 Score=77.72 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=25.0
Q ss_pred CCEEEccCCcccCC-CCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccc
Q 046279 16 LKILVLRSNRFYGP-LCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME 74 (300)
Q Consensus 16 L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~ 74 (300)
|++||||+..|+.. ...-+ ..+.+|+.|.|.++++...+-.. ++.-..|+.|+++.
T Consensus 187 lq~lDLS~s~it~stl~~iL--s~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGIL--SQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHH--HHHHhhhhccccccccCcHHHHH-Hhccccceeecccc
Confidence 55555555554421 00011 23445555555555555333333 34444555555443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=6.7e-06 Score=67.95 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=29.4
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCC--CCCCCCCcEEEcccCCCc
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNS--TFPFQALRIIDLSHNEFT 53 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~l~~L~~L~Ls~n~l~ 53 (300)
++-+++.|+..+||+|.|....|..+. .+.-+.|.+|.|++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 445677788888888877665555431 133466777777777764
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=7.2e-06 Score=64.81 Aligned_cols=84 Identities=25% Similarity=0.207 Sum_probs=49.0
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC-CCccccCCCCCCEEeCCCCccCccCc---hhhhcCCCC
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN-IPASLGNMTALESLDLSFNKLHGIIP---EQLLAVTAL 179 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L 179 (300)
++.|.+|.+.+|+|+..-|.--..+++|+.|.+.+|.|... .-+-+..++.|++|.+-+|.++..-- -.+..+|+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 45566666666666654444434456677777777766521 11234566777777777776653211 124567777
Q ss_pred CeEEcccc
Q 046279 180 ASLNLSYN 187 (300)
Q Consensus 180 ~~L~l~~N 187 (300)
+.||++.=
T Consensus 143 ~~LDF~kV 150 (233)
T KOG1644|consen 143 RTLDFQKV 150 (233)
T ss_pred eEeehhhh
Confidence 77777543
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.97 E-value=9.8e-06 Score=79.33 Aligned_cols=148 Identities=24% Similarity=0.325 Sum_probs=102.3
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCC--CcccCcHHHHhCccccccccccccc-ccccCCceeeeeEE
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNE--FTGSLPRTIFVSMEAMKIVDEMEFG-LQYIGGFYYLDSVT 90 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~lp~~~~~~l~~L~~L~l~~n~-l~~l~~~~~l~~~~ 90 (300)
...+...+-+|.+.. ++.. ...+.|++|-+..|. +. .++.++|..++.|+.||+++|. +..+
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~---~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~L---------- 587 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGS---SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKL---------- 587 (889)
T ss_pred hheeEEEEeccchhh-ccCC---CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcC----------
Confidence 566777777777754 2232 234578888888886 55 7777878888999999988643 2222
Q ss_pred EeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccC--cc
Q 046279 91 VAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLH--GI 168 (300)
Q Consensus 91 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ 168 (300)
|...+.+.+|++|++++..+. .+|..+.++..|.+||+..+.-...+|.....+++|++|.+..-... ..
T Consensus 588 -------P~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 588 -------PSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred -------ChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh
Confidence 334466888889999998888 78888889999999999888765556666666888988888665422 12
Q ss_pred CchhhhcCCCCCeEEc
Q 046279 169 IPEQLLAVTALASLNL 184 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l 184 (300)
.-..+..+.+|+.+..
T Consensus 660 ~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 660 LLKELENLEHLENLSI 675 (889)
T ss_pred hHHhhhcccchhhhee
Confidence 2233444555555444
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.2e-05 Score=63.68 Aligned_cols=128 Identities=18% Similarity=0.127 Sum_probs=86.7
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
=+.++|.+.++....- .+ .-+.+...+||++|.+. .++. |..++.|..|.+++|+|..+.+.
T Consensus 21 e~e~~LR~lkip~ien--lg-~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~------------ 82 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LG-ATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPD------------ 82 (233)
T ss_pred ccccccccccccchhh--cc-ccccccceecccccchh-hccc--CCCccccceEEecCCcceeeccc------------
Confidence 4566777776653211 10 22456778888888887 6653 67788888888888888766432
Q ss_pred chhHHHHhcccccEEEccCCcCCcCC-ChhhcCCCCCCEEeCCCCCCCCCC---CccccCCCCCCEEeCCCCcc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEV-PEVLGNFKSLKVLNLSHNSLTGNI---PASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l 165 (300)
.-..+++|+.|.|.+|.+.... -..+..++.|++|.+-+|..+..- ---+..+++|+.||.+.=.-
T Consensus 83 ----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 83 ----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ----hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 2234778889999999886321 134567899999999999887321 12356789999999776443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=7.2e-06 Score=78.24 Aligned_cols=134 Identities=20% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCcEEEcccCCCc-ccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCC
Q 046279 40 QALRIIDLSHNEFT-GSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFH 118 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~-~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 118 (300)
.+|++||+++.... ...|..+...+|+|+.|.+.+-.+..- -.......+++|..||+|+.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---------------dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---------------DFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---------------hHHHHhhccCccceeecCCCCcc
Confidence 45666666665432 233444455566666666555222100 01122234666777777776666
Q ss_pred cCCChhhcCCCCCCEEeCCCCCCCC-CCCccccCCCCCCEEeCCCCccCccC--c----hhhhcCCCCCeEEccccccc
Q 046279 119 GEVPEVLGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFNKLHGII--P----EQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--~----~~l~~l~~L~~L~l~~N~l~ 190 (300)
.. ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.|+..+.
T Consensus 187 nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 187 NL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred Cc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 33 556666677666666555442 11123445677777777665543221 1 11123667777777766554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.6e-05 Score=75.94 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCC
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFH 118 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 118 (300)
+|+|+.|.+++-.+...--.....++++|..||+++.+++.+.+. +.+++|+.|.+.+=.+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GI------------------S~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGI------------------SRLKNLQVLSMRNLEFE 208 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHH------------------hccccHHHHhccCCCCC
Confidence 566666666665443111123355666666666666665544332 33555555555544333
Q ss_pred c-CCChhhcCCCCCCEEeCCCCCCCCCC--C----ccccCCCCCCEEeCCCCccCcc
Q 046279 119 G-EVPEVLGNFKSLKVLNLSHNSLTGNI--P----ASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 119 ~-~~~~~~~~l~~L~~L~ls~n~l~~~~--p----~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
. ..-..+..+++|+.||+|........ . +.-..+|+|+.||.|+..+.+.
T Consensus 209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 1 11123455666666666655443111 0 1122356666666666555543
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.5e-06 Score=72.57 Aligned_cols=150 Identities=22% Similarity=0.146 Sum_probs=99.5
Q ss_pred CCCcEEEcccCCCcccCcHHHHhCcccccccccccccccc-----cCCceeeeeEEEeecC-c----hhHHHHhcccccE
Q 046279 40 QALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQY-----IGGFYYLDSVTVAMKG-Q----DVLLYKILIIFRT 109 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~l~~~~~~~~~-~----~~~~~~~l~~L~~ 109 (300)
+.|++||||+..|+..--..++..+.+|+.|.+.++++.+ +.....+..++++... + ....+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4599999999999854445668889999999999988743 3444455555554432 2 2235667888889
Q ss_pred EEccCCcCCcCCChh-hcC-CCCCCEEeCCCCCCC---CCCCccccCCCCCCEEeCCCCc-cCccCchhhhcCCCCCeEE
Q 046279 110 LDFSSNRFHGEVPEV-LGN-FKSLKVLNLSHNSLT---GNIPASLGNMTALESLDLSFNK-LHGIIPEQLLAVTALASLN 183 (300)
Q Consensus 110 L~Ls~n~l~~~~~~~-~~~-l~~L~~L~ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~ 183 (300)
|+++.+.+....... +.. -++|+.|++++..-. ..+..-...+++|.+||||+|. ++...-..|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999888876543221 111 257788888876422 1122223467888999998874 4544445667888889888
Q ss_pred cccccc
Q 046279 184 LSYNQL 189 (300)
Q Consensus 184 l~~N~l 189 (300)
++.+..
T Consensus 345 lsRCY~ 350 (419)
T KOG2120|consen 345 LSRCYD 350 (419)
T ss_pred hhhhcC
Confidence 887753
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00018 Score=63.97 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=27.5
Q ss_pred CCCCcEEEcccCCCcccCcHHHHhCccccccccccc-ccccccC
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME-FGLQYIG 81 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~-n~l~~l~ 81 (300)
+.+++.|++++|.++ .+|. -..+|+.|.+.+ +.+..++
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLP 89 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCC
Confidence 678999999999998 8882 234688888876 4444443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=0.00017 Score=59.83 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=15.7
Q ss_pred hhhcCCCCCEEEccCCcccC
Q 046279 9 WLGSLSELKILVLRSNRFYG 28 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~ 28 (300)
.+..+..++.+|||+|.|..
T Consensus 25 el~~~d~~~evdLSGNtigt 44 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGT 44 (388)
T ss_pred HHHhhcceeEEeccCCcccH
Confidence 34457889999999998864
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.50 E-value=5.9e-05 Score=62.03 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=15.8
Q ss_pred ccccEEEccCCcCCcC-CChhhcCCCCCCEEeCCCCCCC
Q 046279 105 IIFRTLDFSSNRFHGE-VPEVLGNFKSLKVLNLSHNSLT 142 (300)
Q Consensus 105 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~ 142 (300)
++|++|++++|++... --..+..+.+|..|++..|..+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4455555555554410 0011233344445555554433
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=9.8e-06 Score=67.20 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=78.8
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEE
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTV 91 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~ 91 (300)
.+.+.+.|++-++.+.+. ... ..++.|++|.||-|.|+ .+.. +..+++|++|.|..|.|..+..+.+|
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic--~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YL----- 84 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SIC--EKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYL----- 84 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHH--HhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHH-----
Confidence 356778888888888752 122 56899999999999998 6643 88999999999999999888765544
Q ss_pred eecCchhHHHHhcccccEEEccCCcCCcCCCh-----hhcCCCCCCEEe
Q 046279 92 AMKGQDVLLYKILIIFRTLDFSSNRFHGEVPE-----VLGNFKSLKVLN 135 (300)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~ 135 (300)
.++++|+.|.|..|.-.+.-+. .+.-+++|+.||
T Consensus 85 ----------knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 ----------KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ----------hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5689999999999987766543 345678888775
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00029 Score=52.66 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=27.2
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccc
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDE 72 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l 72 (300)
+|.++++|+.+.+.+ .+.......+ ...++|+.+++.++ +. .++...|..+..++.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F--~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAF--SNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTT--TT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhc--cccccccccccccc-cc-ccceeeeecccccccccc
Confidence 566667777777764 3444333334 55666777777664 55 555555555544544444
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=0.00011 Score=60.45 Aligned_cols=79 Identities=29% Similarity=0.373 Sum_probs=55.7
Q ss_pred cccccEEEccCC--cCCcCCChhhcCCCCCCEEeCCCCCCCCCCCcc---ccCCCCCCEEeCCCCccCccCc---hhhhc
Q 046279 104 LIIFRTLDFSSN--RFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPAS---LGNMTALESLDLSFNKLHGIIP---EQLLA 175 (300)
Q Consensus 104 l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~~---~~l~~ 175 (300)
+++|+.|.++.| .+.+.++.....+++|+++++++|+|.. +.. +..+.+|..|++.+|..+.... ..|.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 678888999998 5665566555667999999999999873 333 3456778889999887765321 23455
Q ss_pred CCCCCeEEc
Q 046279 176 VTALASLNL 184 (300)
Q Consensus 176 l~~L~~L~l 184 (300)
+++|++||-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 677776654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.00041 Score=51.79 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc
Q 046279 37 FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116 (300)
Q Consensus 37 ~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 116 (300)
.+.++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +..++. ..|..+.+++.+.+.+ .
T Consensus 9 ~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~----------------~~F~~~~~l~~i~~~~-~ 68 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGD----------------NAFSNCKSLESITFPN-N 68 (129)
T ss_dssp TT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-T----------------TTTTT-TT-EEEEETS-T
T ss_pred hCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccce----------------eeeecccccccccccc-c
Confidence 5566777777764 455 666666766666666665552 333322 2233344555666544 3
Q ss_pred CCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCC
Q 046279 117 FHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179 (300)
Q Consensus 117 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 179 (300)
+.......|..+++|+.+++..+ +.......|.+. .|+.+.+.. .+.......|.++++|
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 33233344555566666666544 332333344444 555555554 2332333444444443
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.00034 Score=58.85 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCcEEEcccCCCcccCcH-H-HHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcC
Q 046279 40 QALRIIDLSHNEFTGSLPR-T-IFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRF 117 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~~~lp~-~-~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 117 (300)
..++.|.+.++.|. .... . +-...+.++.+|+..|.+.+.... ......+|.|+.|+++.|.+
T Consensus 45 ra~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI--------------~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 45 RALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEI--------------GAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred cchhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHH--------------HHHHhcCccceEeeccCCcC
Confidence 34445666666555 3221 1 223345566666666665443211 12234466666666666666
Q ss_pred CcCCChhhcCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEEeCCCC
Q 046279 118 HGEVPEVLGNFKSLKVLNLSHNSLTGNI-PASLGNMTALESLDLSFN 163 (300)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N 163 (300)
...+...-.-+.+|+.|-|.+..+.... ...+..+|.++.|++|.|
T Consensus 110 ~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 110 SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5332211123456666666666654322 223345556666666666
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0004 Score=57.91 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=52.3
Q ss_pred HHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEEeCCCCccCccCch-----hhh
Q 046279 101 YKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI-PASLGNMTALESLDLSFNKLHGIIPE-----QLL 174 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~ 174 (300)
...++.|+.|.||-|+|+.. ..+..+++|++|+|..|.|.... -.-+.++++|+.|.|..|.-.+.-+. .+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 34577777888887777743 23556777778888877776321 12356777777777777776655432 344
Q ss_pred cCCCCCeEE
Q 046279 175 AVTALASLN 183 (300)
Q Consensus 175 ~l~~L~~L~ 183 (300)
.+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 567777665
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.0018 Score=32.21 Aligned_cols=17 Identities=47% Similarity=0.766 Sum_probs=8.8
Q ss_pred CcEEEcccCCCcccCcHH
Q 046279 42 LRIIDLSHNEFTGSLPRT 59 (300)
Q Consensus 42 L~~L~Ls~n~l~~~lp~~ 59 (300)
|++|||++|.++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455555555555 55543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.00 E-value=0.0026 Score=31.57 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=10.5
Q ss_pred ccEEEccCCcCCcCCChhhc
Q 046279 107 FRTLDFSSNRFHGEVPEVLG 126 (300)
Q Consensus 107 L~~L~Ls~n~l~~~~~~~~~ 126 (300)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 4444443
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.75 E-value=0.0093 Score=30.85 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=17.0
Q ss_pred CCCCcEEEcccCCCcccCcHHHHh
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFV 62 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~ 62 (300)
+++|++|+|++|.|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 77776553
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.75 E-value=0.0093 Score=30.85 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=17.0
Q ss_pred CCCCcEEEcccCCCcccCcHHHHh
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFV 62 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~ 62 (300)
+++|++|+|++|.|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 77776553
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.65 E-value=0.0068 Score=27.96 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=5.2
Q ss_pred CCcEEEcccCCCc
Q 046279 41 ALRIIDLSHNEFT 53 (300)
Q Consensus 41 ~L~~L~Ls~n~l~ 53 (300)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.59 E-value=0.00011 Score=67.41 Aligned_cols=174 Identities=25% Similarity=0.187 Sum_probs=98.2
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCC--CCCC-CCCcEEEcccCCCcc----cCcHHHHhCccccccccccccccccc
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNS--TFPF-QALRIIDLSHNEFTG----SLPRTIFVSMEAMKIVDEMEFGLQYI 80 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~l-~~L~~L~Ls~n~l~~----~lp~~~~~~l~~L~~L~l~~n~l~~l 80 (300)
.++..+..|+.|+++.|.+.+.-...+. .... ..+++|++..|.+++ .+... +.....++.+++..|.+...
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchh
Confidence 3555667777778877777632111110 0111 446667777777762 23333 33366777777777766422
Q ss_pred CCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC----ChhhcCCCC-CCEEeCCCCCCCCC----CCccccC
Q 046279 81 GGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV----PEVLGNFKS-LKVLNLSHNSLTGN----IPASLGN 151 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~ls~n~l~~~----~p~~~~~ 151 (300)
..... .......+....++++|.++++.++... ...+...+. +..|++..|.+.+. ....+..
T Consensus 188 g~~~l--------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~ 259 (478)
T KOG4308|consen 188 GLLVL--------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSV 259 (478)
T ss_pred hhHHH--------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcc
Confidence 11100 0000111223567788888888776321 123344455 66688888887643 2223444
Q ss_pred C-CCCCEEeCCCCccCccC----chhhhcCCCCCeEEccccccc
Q 046279 152 M-TALESLDLSFNKLHGII----PEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 152 l-~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+ ..+++++++.|.|++.. ...+..++.++.+.++.|.+.
T Consensus 260 ~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 260 LSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4 56788888888887653 344556678888888888775
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.59 E-value=0.0012 Score=53.69 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=31.4
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
+..+..||++.|.+. ..|..++....+..+++..|..+ ..|.+++..+.++.+++..|.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 444455555555554 44555555555555555555554 4455555555555555555544
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.33 E-value=0.003 Score=51.51 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=63.1
Q ss_pred CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc
Q 046279 37 FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116 (300)
Q Consensus 37 ~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 116 (300)
..+...+.||++.|++. .+... |.-++.+..|+++.|.+..++.. +.....+..+++..|.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~~~~~d-----------------~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIKFLPKD-----------------AKQQRETVNAASHKNN 99 (326)
T ss_pred hccceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHhhChhh-----------------HHHHHHHHHHHhhccc
Confidence 45677888888888887 55545 67778888888888887666432 2334556667777777
Q ss_pred CCcCCChhhcCCCCCCEEeCCCCCCC
Q 046279 117 FHGEVPEVLGNFKSLKVLNLSHNSLT 142 (300)
Q Consensus 117 l~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (300)
.+ ..|.+++..+.++++++.+|.+.
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcch
Confidence 76 77888888888888888888755
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.78 E-value=0.18 Score=25.82 Aligned_cols=12 Identities=58% Similarity=0.708 Sum_probs=4.7
Q ss_pred CCEEeCCCCccC
Q 046279 155 LESLDLSFNKLH 166 (300)
Q Consensus 155 L~~L~Ls~N~l~ 166 (300)
|++|+|++|+|+
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333444444333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.78 E-value=0.18 Score=25.82 Aligned_cols=12 Identities=58% Similarity=0.708 Sum_probs=4.7
Q ss_pred CCEEeCCCCccC
Q 046279 155 LESLDLSFNKLH 166 (300)
Q Consensus 155 L~~L~Ls~N~l~ 166 (300)
|++|+|++|+|+
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333444444333
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.032 Score=44.57 Aligned_cols=82 Identities=26% Similarity=0.196 Sum_probs=56.0
Q ss_pred cccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCC-CCCcccc-CCCCCCEEeCCCC-ccCccCchhhhcCCCCCeE
Q 046279 106 IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTG-NIPASLG-NMTALESLDLSFN-KLHGIIPEQLLAVTALASL 182 (300)
Q Consensus 106 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 182 (300)
.++.+|.++..|..+--+.+..++.++.|.+.++.--+ ..-+.++ -.++|+.|++++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 36778888888877766777778888888887775221 1111121 3578999999987 4776655667778888888
Q ss_pred Ecccc
Q 046279 183 NLSYN 187 (300)
Q Consensus 183 ~l~~N 187 (300)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.12 E-value=0.061 Score=27.08 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=6.6
Q ss_pred CCCCEEeCCCCccCc
Q 046279 153 TALESLDLSFNKLHG 167 (300)
Q Consensus 153 ~~L~~L~Ls~N~l~~ 167 (300)
++|++|+|++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.63 E-value=0.39 Score=24.81 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=8.2
Q ss_pred CCCCEEEccCCccc
Q 046279 14 SELKILVLRSNRFY 27 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~ 27 (300)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=0.061 Score=43.03 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=18.2
Q ss_pred CCCcEEEcccCCCcccCcHHHHhCcccccccccc
Q 046279 40 QALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEM 73 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~ 73 (300)
..++.+|-++..|. ...-+-+.+++.++.|.+.
T Consensus 101 ~~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~ 133 (221)
T KOG3864|consen 101 VKIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLA 133 (221)
T ss_pred ceEEEEecCCchHH-HHHHHHHhccchhhhheec
Confidence 45788899888887 3222223444444444433
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=87.07 E-value=0.25 Score=45.37 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=28.8
Q ss_pred cccccEEEccCCc-CCcCCChhhcC-CCCCCEEeCCCCC-CCCCCC-ccccCCCCCCEEeCCCCcc
Q 046279 104 LIIFRTLDFSSNR-FHGEVPEVLGN-FKSLKVLNLSHNS-LTGNIP-ASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 104 l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~ls~n~-l~~~~p-~~~~~l~~L~~L~Ls~N~l 165 (300)
+.+|+.|+++.+. +++..-..+.. +++|+.|.+.++. +++..- .....++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555666665555 33322222222 5566666655554 332211 1122345566666665543
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.86 E-value=0.41 Score=52.16 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=26.4
Q ss_pred eCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 159 DLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 159 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
||++|+|+...+..|..+++|+.|+|++|++.|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 4677777766666677777777777777777777653
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.80 E-value=0.41 Score=24.68 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=13.2
Q ss_pred CCCcEEEcccCCCcccCcH
Q 046279 40 QALRIIDLSHNEFTGSLPR 58 (300)
Q Consensus 40 ~~L~~L~Ls~n~l~~~lp~ 58 (300)
++|+.|+.++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777888888877 7774
No 84
>PF15050 SCIMP: SCIMP protein
Probab=86.18 E-value=0.43 Score=34.33 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=13.0
Q ss_pred ceeeeehhhhccceeccCCCCC
Q 046279 277 RWLVKMVERDQQNKVRRPRPRH 298 (300)
Q Consensus 277 ~w~~~~~~~~~~~~~~~~~~~~ 298 (300)
+|.+|--++|.-+|-.+.++|+
T Consensus 32 R~~lRqGkkweiakp~k~~~rd 53 (133)
T PF15050_consen 32 RWQLRQGKKWEIAKPLKQKQRD 53 (133)
T ss_pred HHHHHccccceeccchhhhccc
Confidence 4666666666656655555554
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.12 E-value=1.1 Score=41.27 Aligned_cols=89 Identities=25% Similarity=0.120 Sum_probs=57.4
Q ss_pred HHhcccccEEEccCC-cCCcCCC----hhhcCCCCCCEEeCCCCC-CCCCCCcccc-CCCCCCEEeCCCCc-cCccC-ch
Q 046279 101 YKILIIFRTLDFSSN-RFHGEVP----EVLGNFKSLKVLNLSHNS-LTGNIPASLG-NMTALESLDLSFNK-LHGII-PE 171 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~n-~l~~~~~----~~~~~l~~L~~L~ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~~-~~ 171 (300)
....+.|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+. .+++|++|.+.++. +++.. -.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345788999998873 2111111 233456888999999888 5544333333 27889999987776 55442 23
Q ss_pred hhhcCCCCCeEEcccccc
Q 046279 172 QLLAVTALASLNLSYNQL 189 (300)
Q Consensus 172 ~l~~l~~L~~L~l~~N~l 189 (300)
....++.|++|+++++..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 334678899999997754
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.71 E-value=1 Score=23.54 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=5.7
Q ss_pred CcEEEcccCCCc
Q 046279 42 LRIIDLSHNEFT 53 (300)
Q Consensus 42 L~~L~Ls~n~l~ 53 (300)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444555555443
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=79.97 E-value=0.34 Score=43.14 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=39.1
Q ss_pred cccccEEEccCCcCCcC--CChhhcCCCCCCEEeCCCCCCCCCC-----CccccCCCCCCEEeCCCCccCc-cCchhhhc
Q 046279 104 LIIFRTLDFSSNRFHGE--VPEVLGNFKSLKVLNLSHNSLTGNI-----PASLGNMTALESLDLSFNKLHG-IIPEQLLA 175 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~ 175 (300)
.+.|+.+++.++..... +...-.+++.|+.|.++++...... ...-..+..|+.+-|+++.... ..-+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 45566666655543211 1111234566666666665432111 1111234556666666665332 22233445
Q ss_pred CCCCCeEEcccc
Q 046279 176 VTALASLNLSYN 187 (300)
Q Consensus 176 l~~L~~L~l~~N 187 (300)
+++|+.+++-+.
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 556666555444
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.92 E-value=0.074 Score=49.02 Aligned_cols=61 Identities=36% Similarity=0.458 Sum_probs=35.9
Q ss_pred ccEEEccCCcCCcC----CChhhcCC-CCCCEEeCCCCCCCCCC----CccccCCCCCCEEeCCCCccCc
Q 046279 107 FRTLDFSSNRFHGE----VPEVLGNF-KSLKVLNLSHNSLTGNI----PASLGNMTALESLDLSFNKLHG 167 (300)
Q Consensus 107 L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~ 167 (300)
+..|+++.|.+.+. ..+.+..+ ..++.++++.|.|+..- .+.+...+.++.+.++.|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44567777766543 22334444 56677777777776432 2334455677777777777664
No 89
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.03 E-value=2.7 Score=30.82 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhhHhHHHHHHHhcCCc
Q 046279 251 MAKLGYASGLVIGLSIGYMVLSIGGP 276 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (300)
+++...++|+|||++||+++.++-.+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 45667778999999999999886554
No 90
>PF15179 Myc_target_1: Myc target protein 1
Probab=75.83 E-value=2.1 Score=33.46 Aligned_cols=25 Identities=32% Similarity=0.727 Sum_probs=13.2
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
.|..+.+++++.++||+++|.+++.
T Consensus 17 ~~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 17 DWEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566665544443
No 91
>PRK11677 hypothetical protein; Provisional
Probab=74.01 E-value=3 Score=31.25 Aligned_cols=23 Identities=30% Similarity=0.435 Sum_probs=16.5
Q ss_pred hhhhhhhhhhHhHHHHHHHhcCC
Q 046279 253 KLGYASGLVIGLSIGYMVLSIGG 275 (300)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~ 275 (300)
++.++++++||+++|+++.++..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555788888888888887543
No 92
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=73.08 E-value=1.7 Score=32.75 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=7.2
Q ss_pred hhhhhhhhHhHHHHHHHh
Q 046279 255 GYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~ 272 (300)
++++.+++.++++.+-++
T Consensus 13 ~igi~Ll~lLl~cgiGcv 30 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCV 30 (158)
T ss_pred HHHHHHHHHHHHHhcceE
Confidence 333344444444433333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.35 E-value=1.9 Score=39.93 Aligned_cols=62 Identities=29% Similarity=0.268 Sum_probs=31.0
Q ss_pred cccccEEEccCCcCCcCC--ChhhcCCCCCCEEeCCCC--CCCCCCCcccc--CCCCCCEEeCCCCccCc
Q 046279 104 LIIFRTLDFSSNRFHGEV--PEVLGNFKSLKVLNLSHN--SLTGNIPASLG--NMTALESLDLSFNKLHG 167 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~ls~n--~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~ 167 (300)
.+.+..++|++|++...- ...-...++|..|+|++| .+.. ..++. +...|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 455556666666665221 111123466677777776 3321 11122 22446667777776654
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=68.76 E-value=6.2 Score=22.29 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.3
Q ss_pred hhhhhHhHHHH
Q 046279 258 SGLVIGLSIGY 268 (300)
Q Consensus 258 ~~~~~~~~~~~ 268 (300)
+++++++++..
T Consensus 10 v~V~vg~~iii 20 (38)
T PF02439_consen 10 VAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.29 E-value=2.8 Score=38.88 Aligned_cols=65 Identities=23% Similarity=0.165 Sum_probs=33.6
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccC--CCcccCcHHHHhCcccccccccccccc
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHN--EFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
+.+.+..++|++|++.....-+--....++|+.|+|++| .+. ..++-.-.+...|++|-+.+|.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcc
Confidence 455677777888877642211111123577778888887 333 22211112233456666666655
No 96
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.55 E-value=7.5 Score=28.96 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=15.2
Q ss_pred hhhhhhhHhHHHHHHHhcCCc
Q 046279 256 YASGLVIGLSIGYMVLSIGGP 276 (300)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ 276 (300)
+++++|||++||+++.++..+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 346788888888888776554
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=59.49 E-value=17 Score=26.79 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=7.5
Q ss_pred hhhhhhhhhhhhHhHHHHH
Q 046279 251 MAKLGYASGLVIGLSIGYM 269 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (300)
.+++.+.+++.+++++..+
T Consensus 100 Yia~~~il~il~~i~is~~ 118 (139)
T PHA03099 100 YIPSPGIVLVLVGIIITCC 118 (139)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3343333344444444333
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.25 E-value=9.2 Score=28.18 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=2.7
Q ss_pred hhhhhHh
Q 046279 258 SGLVIGL 264 (300)
Q Consensus 258 ~~~~~~~ 264 (300)
+|++.|+
T Consensus 71 ~gv~aGv 77 (122)
T PF01102_consen 71 FGVMAGV 77 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 99
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=55.71 E-value=2.5 Score=32.20 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHhHHHHHHHh
Q 046279 253 KLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ 272 (300)
.++++.|++.+.++++|+++
T Consensus 8 ~~~~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 8 NVVIAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455566677777888876
No 100
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=55.24 E-value=5.3 Score=30.48 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=7.2
Q ss_pred hhhhhhhhhhhHhHHH
Q 046279 252 AKLGYASGLVIGLSIG 267 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (300)
+++|+++|+.+.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 3445555544444444
No 101
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=54.05 E-value=7.1 Score=35.14 Aligned_cols=157 Identities=16% Similarity=0.079 Sum_probs=86.9
Q ss_pred cCCCCCEEEccCCcccCCCC-CCCCCCCCCCCcEEEcccCCCcccCc-HHHHhCcccccccccccccccccCCceeeeeE
Q 046279 12 SLSELKILVLRSNRFYGPLC-KSNSTFPFQALRIIDLSHNEFTGSLP-RTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSV 89 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~lp-~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~ 89 (300)
++..|++|+.++....+..+ ..+ ..+..+|++|-++.++--+..- ..+-.+.+.|+.+++.+.....-..+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~----- 365 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA----- 365 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-----
Confidence 56678888888765422111 111 1345789999999887321221 123456778888888776543221111
Q ss_pred EEeecCchhHHHHhcccccEEEccCCcCCcCC-----ChhhcCCCCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCCCC
Q 046279 90 TVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV-----PEVLGNFKSLKVLNLSHNSLT-GNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 90 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N 163 (300)
......+.|+.|.++++...... ...-.++..|..+-++++... ...-+.+...++|+.+++-++
T Consensus 366 ---------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 366 ---------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ---------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 11134677888888876543211 122234567888888887654 223344566778888887776
Q ss_pred ccCcc--CchhhhcCCCCCeEE
Q 046279 164 KLHGI--IPEQLLAVTALASLN 183 (300)
Q Consensus 164 ~l~~~--~~~~l~~l~~L~~L~ 183 (300)
+--.. +...-.++|+++...
T Consensus 437 q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhHHHHhhCccceehh
Confidence 53211 222233556555433
No 102
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=51.94 E-value=17 Score=24.25 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=6.0
Q ss_pred hhhhhHhHHHHHHHh
Q 046279 258 SGLVIGLSIGYMVLS 272 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (300)
+|+++.++++++++.
T Consensus 8 ~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhheeEEE
Confidence 344444434433433
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.08 E-value=6.9 Score=28.83 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhhhHhHHHHHHH
Q 046279 250 KMAKLGYASGLVIGLSIGYMVL 271 (300)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ 271 (300)
..+.+|+++|++..++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 4556666666655554444443
No 104
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=50.14 E-value=9.2 Score=33.21 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhHhHHHHHHHh
Q 046279 252 AKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (300)
..+.|++|++++++++++++.
T Consensus 271 ~~vPIaVG~~La~lvlivLia 291 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIA 291 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 456666665555444444433
No 105
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.20 E-value=5.6 Score=29.27 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhhhhHhHHHHHHHhcCCc
Q 046279 258 SGLVIGLSIGYMVLSIGGP 276 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ 276 (300)
+|++.+.++++|+++ .++
T Consensus 3 ag~a~~~~lgYciYF-D~K 20 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYF-DYK 20 (121)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHhhc-ccc
Confidence 355556677777766 444
No 106
>PRK11677 hypothetical protein; Provisional
Probab=49.14 E-value=13 Score=27.98 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=19.3
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
.|..+++++++|++||++++-+.-.
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3777888888899999888876543
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=48.79 E-value=8.9 Score=24.61 Aligned_cols=17 Identities=24% Similarity=0.598 Sum_probs=11.5
Q ss_pred hhhhhhhHhHHHHHHHh
Q 046279 256 YASGLVIGLSIGYMVLS 272 (300)
Q Consensus 256 ~~~~~~~~~~~~~~~~~ 272 (300)
+++++++|+++|+++.+
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567777777777765
No 108
>PF15179 Myc_target_1: Myc target protein 1
Probab=43.95 E-value=27 Score=27.51 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=14.3
Q ss_pred hhhhhhhhhhhhHhHHHHHHHhcCCcc
Q 046279 251 MAKLGYASGLVIGLSIGYMVLSIGGPR 277 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (300)
.+.+.+++|+++|.+|-+++.+..+++
T Consensus 24 aF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444556666666655555544443
No 109
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.66 E-value=18 Score=26.65 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=19.5
Q ss_pred ccchhhhhhhhhhhhhHhHHHHHH
Q 046279 247 LDWKMAKLGYASGLVIGLSIGYMV 270 (300)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (300)
..|..+.+|+++|++||.+++=+.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 368888999999999999887543
No 110
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=42.49 E-value=23 Score=23.99 Aligned_cols=8 Identities=13% Similarity=-0.097 Sum_probs=3.0
Q ss_pred hhhhHhHH
Q 046279 259 GLVIGLSI 266 (300)
Q Consensus 259 ~~~~~~~~ 266 (300)
+++++.+.
T Consensus 26 ~llL~~v~ 33 (87)
T PF11980_consen 26 LLLLVAVC 33 (87)
T ss_pred HHHHHHHH
Confidence 33333333
No 111
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.37 E-value=18 Score=18.22 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=7.0
Q ss_pred CCCcEEEcccCC
Q 046279 40 QALRIIDLSHNE 51 (300)
Q Consensus 40 ~~L~~L~Ls~n~ 51 (300)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 112
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=42.12 E-value=53 Score=19.02 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=5.1
Q ss_pred CCCEEEcc
Q 046279 15 ELKILVLR 22 (300)
Q Consensus 15 ~L~~L~Ls 22 (300)
++++|.+.
T Consensus 13 ~l~~L~~g 20 (44)
T PF05725_consen 13 SLKSLIFG 20 (44)
T ss_pred CCeEEEEC
Confidence 56777773
No 113
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=42.09 E-value=29 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=13.4
Q ss_pred hhhhhhhhhHhHHHHHHHhcCCcc
Q 046279 254 LGYASGLVIGLSIGYMVLSIGGPR 277 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~ 277 (300)
+.++..+++++.+++++++++++.
T Consensus 9 ~l~g~llligftivvl~vyfgrk~ 32 (126)
T PF13120_consen 9 LLIGTLLLIGFTIVVLLVYFGRKF 32 (126)
T ss_pred HHHHHHHHHHHHHHhhhheeccee
Confidence 334445666666666666655543
No 114
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=40.73 E-value=14 Score=33.52 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=16.3
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
..+++.|++++++||+.+|+|++++
T Consensus 366 tgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHHhhh
Confidence 3445666666677777777777754
No 115
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.12 E-value=23 Score=39.74 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=19.1
Q ss_pred EccCCcCCcCCChhhcCCCCCCEEeCCCCCCC
Q 046279 111 DFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLT 142 (300)
Q Consensus 111 ~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (300)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45566666555555666666666666666554
No 116
>PF14851 FAM176: FAM176 family
Probab=37.81 E-value=35 Score=26.27 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=7.8
Q ss_pred hhhhhhhhhhhhHhHHH
Q 046279 251 MAKLGYASGLVIGLSIG 267 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (300)
++++++++|+++.+.+.
T Consensus 25 YFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLL 41 (153)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455544544444333
No 117
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=37.55 E-value=24 Score=31.78 Aligned_cols=28 Identities=7% Similarity=0.283 Sum_probs=17.3
Q ss_pred hhhhhhhhhhhhHhHHHHHHHhcCCcce
Q 046279 251 MAKLGYASGLVIGLSIGYMVLSIGGPRW 278 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w 278 (300)
..+.|++++++|++|++.+++++..+.|
T Consensus 65 lhaagFfvaflvslVL~~l~~f~l~r~~ 92 (429)
T PF12297_consen 65 LHAAGFFVAFLVSLVLTWLCFFLLARTR 92 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666677777777766666544444
No 118
>PHA03291 envelope glycoprotein I; Provisional
Probab=37.08 E-value=18 Score=31.56 Aligned_cols=23 Identities=4% Similarity=0.259 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhhHhHHHHHHHhc
Q 046279 251 MAKLGYASGLVIGLSIGYMVLSI 273 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (300)
++-++|-..+++.+++|.|+++.
T Consensus 288 iiQiAIPasii~cV~lGSC~Ccl 310 (401)
T PHA03291 288 IIQIAIPASIIACVFLGSCACCL 310 (401)
T ss_pred hheeccchHHHHHhhhhhhhhhh
Confidence 45556667788888888777663
No 119
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.73 E-value=44 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=13.8
Q ss_pred hhhhhhhhhHhHHHHHHHh
Q 046279 254 LGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ 272 (300)
+.+++++++|++.|+++.+
T Consensus 8 l~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 8 LLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777888888877765
No 120
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.42 E-value=11 Score=28.76 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhhHhHHHHH
Q 046279 250 KMAKLGYASGLVIGLSIGYM 269 (300)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (300)
.-+++|+++++++++++.++
T Consensus 52 IGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 52 IGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEecccHHHHHHHHHhhe
Confidence 34456666666665444443
No 121
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=34.41 E-value=43 Score=27.08 Aligned_cols=6 Identities=0% Similarity=-0.213 Sum_probs=2.4
Q ss_pred cccccc
Q 046279 241 DETASW 246 (300)
Q Consensus 241 ~~~~~~ 246 (300)
.-|+..
T Consensus 119 ~~CEen 124 (227)
T PF05399_consen 119 EICEEN 124 (227)
T ss_pred hhhhcC
Confidence 334433
No 122
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=34.30 E-value=54 Score=24.11 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.7
Q ss_pred cccchhhhhhh
Q 046279 246 WLDWKMAKLGY 256 (300)
Q Consensus 246 ~~~~~~~~~~~ 256 (300)
...|.+..+++
T Consensus 32 ~tpWNysiL~L 42 (125)
T PF15048_consen 32 ATPWNYSILAL 42 (125)
T ss_pred CCCcchHHHHH
Confidence 34565655554
No 123
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=34.16 E-value=56 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=5.2
Q ss_pred hhhHhHHHHHHHh
Q 046279 260 LVIGLSIGYMVLS 272 (300)
Q Consensus 260 ~~~~~~~~~~~~~ 272 (300)
.++|+.+++++.+
T Consensus 290 ~~~G~~~~~f~LY 302 (354)
T PF05795_consen 290 SVLGIPLIFFLLY 302 (354)
T ss_pred hhHHHHHHHHHHh
Confidence 3334444444433
No 124
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=33.79 E-value=31 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=13.3
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHHhcCCccee
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVLSIGGPRWL 279 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 279 (300)
.|.+++.| .++++.+++..+++. ++.+|.
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~C-C~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCC-CRAKHK 69 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHH-hhhhhh
Confidence 45555444 455554444333333 444453
No 125
>PRK10404 hypothetical protein; Provisional
Probab=32.43 E-value=32 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.765 Sum_probs=9.5
Q ss_pred cchhhhhhhhhhhhhHhHHHHHH
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMV 270 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ 270 (300)
+|..+.+ +..+|+++|+++
T Consensus 80 Pw~avGi----aagvGlllG~Ll 98 (101)
T PRK10404 80 PWQGIGV----GAAVGLVLGLLL 98 (101)
T ss_pred cHHHHHH----HHHHHHHHHHHH
Confidence 4544444 444555555554
No 126
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.31 E-value=52 Score=19.98 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=6.8
Q ss_pred hhhhhHhHHHHHHHh
Q 046279 258 SGLVIGLSIGYMVLS 272 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (300)
..+++.+++++.++.
T Consensus 8 ~i~iv~~lLg~~I~~ 22 (50)
T PF12606_consen 8 SIFIVMGLLGLSICT 22 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 127
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.90 E-value=15 Score=23.68 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=11.2
Q ss_pred hhhhhhhhhhHhHHHHHHHh
Q 046279 253 KLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ 272 (300)
.+.+.+++++|++++.++..
T Consensus 21 ~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666665544
No 128
>PRK10132 hypothetical protein; Provisional
Probab=31.42 E-value=34 Score=24.63 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=7.5
Q ss_pred hhhhhHhHHHHHHH
Q 046279 258 SGLVIGLSIGYMVL 271 (300)
Q Consensus 258 ~~~~~~~~~~~~~~ 271 (300)
++..+|+++|+++.
T Consensus 92 iaagvG~llG~Ll~ 105 (108)
T PRK10132 92 TAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHh
Confidence 34445566666543
No 129
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=30.55 E-value=32 Score=26.37 Aligned_cols=8 Identities=38% Similarity=1.153 Sum_probs=3.1
Q ss_pred hhhHhHHH
Q 046279 260 LVIGLSIG 267 (300)
Q Consensus 260 ~~~~~~~~ 267 (300)
++++++.+
T Consensus 125 ~i~~~v~~ 132 (154)
T PF09835_consen 125 LILGIVLG 132 (154)
T ss_pred HHHHHHHH
Confidence 33333333
No 130
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.28 E-value=14 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=13.2
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
.|..+..+..+|.++..+++.+.++
T Consensus 134 lw~P~l~pm~vgav~~~a~~~ll~y 158 (184)
T COG3216 134 LWGPVLKPMLVGAVPAGAIGGLLFY 158 (184)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555555555555555544444
No 131
>PRK01844 hypothetical protein; Provisional
Probab=29.73 E-value=51 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=10.1
Q ss_pred hhhhhHhHHHHHHHh
Q 046279 258 SGLVIGLSIGYMVLS 272 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (300)
+++++|+++|+++.+
T Consensus 12 ~~li~G~~~Gff~ar 26 (72)
T PRK01844 12 VALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777776655
No 132
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.46 E-value=38 Score=29.33 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=7.6
Q ss_pred hhhhhHhHHHHHHHh
Q 046279 258 SGLVIGLSIGYMVLS 272 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (300)
+.+|+++++++++++
T Consensus 266 liIVLIMvIIYLILR 280 (299)
T PF02009_consen 266 LIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 133
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.35 E-value=48 Score=22.44 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=6.0
Q ss_pred hhhhhhhHhHHHHHHH
Q 046279 256 YASGLVIGLSIGYMVL 271 (300)
Q Consensus 256 ~~~~~~~~~~~~~~~~ 271 (300)
+++++++++++=.+++
T Consensus 12 liv~~iiaIvvW~iv~ 27 (81)
T PF00558_consen 12 LIVALIIAIVVWTIVY 27 (81)
T ss_dssp HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 134
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=27.26 E-value=56 Score=26.87 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=9.1
Q ss_pred cceeeeehhhhccc
Q 046279 276 PRWLVKMVERDQQN 289 (300)
Q Consensus 276 ~~w~~~~~~~~~~~ 289 (300)
..||+++.+.....
T Consensus 176 a~yYfK~~K~K~~~ 189 (218)
T PF14283_consen 176 AYYYFKFYKPKQEE 189 (218)
T ss_pred eEEEEEEecccccc
Confidence 44888877765443
No 135
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.71 E-value=69 Score=29.61 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=19.7
Q ss_pred CCCCCCEEeCCCCCCCC----CCC----ccccCCCCCCEEeCCCCccC
Q 046279 127 NFKSLKVLNLSHNSLTG----NIP----ASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 127 ~l~~L~~L~ls~n~l~~----~~p----~~~~~l~~L~~L~Ls~N~l~ 166 (300)
.-++++..+++.|..+. +.+ +.+..-.++ +|++......
T Consensus 266 ~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 266 RTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred cccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCc
Confidence 34566666776665441 112 223334455 6666665543
No 136
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.10 E-value=62 Score=24.65 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=10.7
Q ss_pred hhhhhhHhHHHHHHHhcCCcceeee
Q 046279 257 ASGLVIGLSIGYMVLSIGGPRWLVK 281 (300)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~w~~~ 281 (300)
.+++.+.+++.++++. ....|+++
T Consensus 11 ~i~igi~Ll~lLl~cg-iGcvwhwk 34 (158)
T PF11770_consen 11 AISIGISLLLLLLLCG-IGCVWHWK 34 (158)
T ss_pred HHHHHHHHHHHHHHHh-cceEEEee
Confidence 3444444444444444 33446544
No 137
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=25.60 E-value=34 Score=27.34 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=9.7
Q ss_pred chhhhhhhhhhhhhHhHHHHHH
Q 046279 249 WKMAKLGYASGLVIGLSIGYMV 270 (300)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~ 270 (300)
+..++|++-+++++++++++++
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~ 178 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGF 178 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhh
Confidence 3344445444444444443333
No 138
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.58 E-value=28 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=11.2
Q ss_pred hhhhhhhhHhHHHHHHHhcCCc
Q 046279 255 GYASGLVIGLSIGYMVLSIGGP 276 (300)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~ 276 (300)
.++.++++.++++-++++.|++
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555666555553443
No 139
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=25.24 E-value=81 Score=22.39 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 046279 221 TCSNDGL 227 (300)
Q Consensus 221 ~C~~~~~ 227 (300)
.|.....
T Consensus 18 ~C~~~Ga 24 (103)
T PF06422_consen 18 VCAVVGA 24 (103)
T ss_pred ccCCCCC
Confidence 4554443
No 140
>PF14851 FAM176: FAM176 family
Probab=24.65 E-value=76 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhHhHHHHHHHh
Q 046279 251 MAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
.+++.+++++-+|+++++++++
T Consensus 21 ~~aLYFv~gVC~GLlLtLcllV 42 (153)
T PF14851_consen 21 RFALYFVSGVCAGLLLTLCLLV 42 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999887
No 141
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=62 Score=23.00 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=6.4
Q ss_pred hhhhhHhHHHHHH
Q 046279 258 SGLVIGLSIGYMV 270 (300)
Q Consensus 258 ~~~~~~~~~~~~~ 270 (300)
++..||+++|+++
T Consensus 89 vaAaVGlllGlLl 101 (104)
T COG4575 89 VAAAVGLLLGLLL 101 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555544
No 142
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.11 E-value=58 Score=22.55 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=6.8
Q ss_pred hhhhhHhHHHHHH
Q 046279 258 SGLVIGLSIGYMV 270 (300)
Q Consensus 258 ~~~~~~~~~~~~~ 270 (300)
+++.+|+++++++
T Consensus 79 iAagvG~llG~Ll 91 (94)
T PF05957_consen 79 IAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 143
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.39 E-value=86 Score=21.01 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=8.8
Q ss_pred hhhhhhhHhHHHHHHHh
Q 046279 256 YASGLVIGLSIGYMVLS 272 (300)
Q Consensus 256 ~~~~~~~~~~~~~~~~~ 272 (300)
+++++++|+++++.+++
T Consensus 62 l~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555544
No 144
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=1.5e+02 Score=29.31 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.4
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q 046279 211 IHLCGEPLTATCSNDGLPK 229 (300)
Q Consensus 211 ~~l~~~~~~~~C~~~~~~~ 229 (300)
.+.|.+-..|-|...+.+.
T Consensus 635 ~GVCnn~~~ChC~~gwapp 653 (716)
T KOG3607|consen 635 HGVCNNELNCHCEPGWAPP 653 (716)
T ss_pred CcccCCCcceeeCCCCCCC
Confidence 4677888888888877654
No 145
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.21 E-value=66 Score=31.68 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=5.2
Q ss_pred hhhhhhhhhhhHh
Q 046279 252 AKLGYASGLVIGL 264 (300)
Q Consensus 252 ~~~~~~~~~~~~~ 264 (300)
+.++|..++++++
T Consensus 274 fLl~ILG~~~liv 286 (807)
T PF10577_consen 274 FLLAILGGTALIV 286 (807)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 146
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.20 E-value=51 Score=19.46 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=8.0
Q ss_pred hhhhhhhhhhhhHhHHHHH
Q 046279 251 MAKLGYASGLVIGLSIGYM 269 (300)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (300)
+++.++++++++.+++.+.
T Consensus 6 yVW~sYg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 147
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.91 E-value=98 Score=29.70 Aligned_cols=27 Identities=15% Similarity=-0.076 Sum_probs=13.0
Q ss_pred cccchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 246 WLDWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
...|.++++.+.+++|++++++++++.
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~L 293 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKL 293 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHH
Confidence 345665555544444444444444444
No 148
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.88 E-value=86 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=11.5
Q ss_pred hhhhhhhhhHhHHHHHHHh
Q 046279 254 LGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ 272 (300)
+++.+|.++|.++++++--
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4555666666666666654
No 149
>PRK00523 hypothetical protein; Provisional
Probab=20.41 E-value=51 Score=21.71 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=9.1
Q ss_pred hhhhhHhHHHHHHHh
Q 046279 258 SGLVIGLSIGYMVLS 272 (300)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (300)
+++++|+++++++.+
T Consensus 13 ~~li~G~~~Gffiar 27 (72)
T PRK00523 13 PLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666666655
No 150
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.33 E-value=1.2e+02 Score=20.25 Aligned_cols=15 Identities=0% Similarity=-0.214 Sum_probs=6.4
Q ss_pred hHHHHHHHhcCCcce
Q 046279 264 LSIGYMVLSIGGPRW 278 (300)
Q Consensus 264 ~~~~~~~~~~~~~~w 278 (300)
+|.-.+++.+|+-+|
T Consensus 16 fVaPiWL~LHY~sk~ 30 (75)
T PRK09458 16 FVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHHHHHHHhhcccc
Confidence 333344444444444
Done!