Query 046279
Match_columns 300
No_of_seqs 405 out of 2874
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-32 1.5E-36 261.8 14.4 127 101-228 628-754 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-30 1.5E-34 222.7 12.0 214 3-222 90-312 (313)
3 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-28 1E-32 237.3 14.5 209 2-217 302-564 (844)
4 3zyi_A Leucine-rich repeat-con 99.9 3.8E-26 1.3E-30 207.6 13.7 210 2-216 87-306 (452)
5 3zyj_A Leucine-rich repeat-con 99.9 5E-26 1.7E-30 206.1 12.2 210 2-216 76-295 (440)
6 3rgz_A Protein brassinosteroid 99.9 9E-26 3.1E-30 217.7 14.0 192 2-196 430-699 (768)
7 2o6q_A Variable lymphocyte rec 99.9 5.9E-25 2E-29 186.4 16.7 193 5-223 30-222 (270)
8 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-25 4.3E-30 191.9 11.8 204 13-224 31-243 (285)
9 3v47_A TOLL-like receptor 5B a 99.9 1.6E-25 5.4E-30 203.4 13.1 116 103-223 297-412 (455)
10 4fcg_A Uncharacterized protein 99.9 9.9E-25 3.4E-29 190.1 16.9 186 5-196 95-296 (328)
11 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-25 4.1E-30 194.7 10.3 190 2-196 62-263 (313)
12 1p9a_G Platelet glycoprotein I 99.9 2.7E-24 9.1E-29 184.2 13.9 203 9-223 5-212 (290)
13 3m19_A Variable lymphocyte rec 99.9 1.7E-24 5.7E-29 181.6 11.8 199 5-225 28-232 (251)
14 1ozn_A Reticulon 4 receptor; N 99.9 6E-25 2.1E-29 187.7 9.0 191 2-195 44-243 (285)
15 2z66_A Variable lymphocyte rec 99.9 4.8E-25 1.6E-29 190.2 7.5 174 14-190 28-212 (306)
16 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4.2E-28 178.2 15.9 175 2-195 49-223 (270)
17 2z80_A TOLL-like receptor 2, v 99.9 1.2E-24 4.3E-29 191.3 9.3 213 2-223 64-318 (353)
18 2id5_A Lingo-1, leucine rich r 99.9 5.5E-24 1.9E-28 194.5 12.9 186 4-192 118-311 (477)
19 2id5_A Lingo-1, leucine rich r 99.9 9.9E-24 3.4E-28 192.8 13.9 219 3-224 45-338 (477)
20 2z62_A TOLL-like receptor 4, v 99.9 7.3E-24 2.5E-28 180.1 11.6 207 6-223 22-241 (276)
21 3j0a_A TOLL-like receptor 5; m 99.9 3.8E-24 1.3E-28 208.4 10.2 216 2-224 278-565 (844)
22 1xku_A Decorin; proteoglycan, 99.9 8.5E-23 2.9E-27 177.9 16.4 184 2-195 64-257 (330)
23 3rfs_A Internalin B, repeat mo 99.9 5.9E-23 2E-27 174.2 14.8 178 10-194 37-222 (272)
24 4fcg_A Uncharacterized protein 99.9 3.7E-23 1.3E-27 180.2 13.4 185 2-190 116-314 (328)
25 3rfs_A Internalin B, repeat mo 99.9 1.8E-22 6E-27 171.3 16.5 197 14-223 19-222 (272)
26 3oja_B Anopheles plasmodium-re 99.9 2.7E-23 9.4E-28 195.1 12.3 112 101-222 250-361 (597)
27 3zyj_A Leucine-rich repeat-con 99.9 5E-23 1.7E-27 186.4 13.6 190 2-194 100-296 (440)
28 3zyi_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 187.5 13.0 190 2-194 111-307 (452)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-23 6E-28 199.2 10.7 120 99-224 498-627 (680)
30 3t6q_A CD180 antigen; protein- 99.9 1.2E-23 3.9E-28 197.8 9.3 190 2-194 313-517 (606)
31 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 169.1 15.7 181 14-221 14-194 (251)
32 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4.2E-27 180.9 14.7 113 101-223 244-356 (390)
33 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-23 1E-27 195.1 10.8 194 7-224 369-563 (606)
34 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.6E-28 192.4 7.9 201 6-215 22-252 (487)
35 1xku_A Decorin; proteoglycan, 99.9 4E-22 1.4E-26 173.7 15.7 181 6-194 46-233 (330)
36 1wwl_A Monocyte differentiatio 99.9 2.4E-23 8.2E-28 180.1 7.7 186 4-195 78-291 (312)
37 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-22 7.4E-27 175.6 13.7 181 3-190 67-277 (332)
38 3v47_A TOLL-like receptor 5B a 99.9 1.1E-22 3.8E-27 184.6 12.2 111 86-196 301-414 (455)
39 4eco_A Uncharacterized protein 99.9 3.5E-23 1.2E-27 195.6 8.1 189 2-195 195-420 (636)
40 2v70_A SLIT-2, SLIT homolog 2 99.9 3.2E-22 1.1E-26 164.4 12.8 159 16-195 13-171 (220)
41 1p9a_G Platelet glycoprotein I 99.9 4.3E-22 1.5E-26 170.5 13.9 174 14-193 31-211 (290)
42 2z66_A Variable lymphocyte rec 99.9 7.5E-23 2.6E-27 176.4 8.4 211 5-224 42-266 (306)
43 4eco_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 184.7 17.3 203 5-213 367-600 (636)
44 1wwl_A Monocyte differentiatio 99.9 2.9E-22 9.8E-27 173.3 11.6 181 2-191 107-310 (312)
45 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.9E-27 168.5 9.0 189 5-204 25-230 (239)
46 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-22 8.5E-27 174.1 9.6 175 12-195 32-231 (317)
47 3o6n_A APL1; leucine-rich repe 99.9 4.7E-22 1.6E-26 177.2 11.6 69 7-78 86-154 (390)
48 3t6q_A CD180 antigen; protein- 99.9 3.7E-22 1.2E-26 187.6 11.5 214 2-224 337-565 (606)
49 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-21 6.2E-26 185.3 16.3 191 2-195 341-577 (680)
50 2z62_A TOLL-like receptor 4, v 99.9 4.9E-22 1.7E-26 168.8 11.0 191 2-196 40-243 (276)
51 4ecn_A Leucine-rich repeat pro 99.9 4.4E-22 1.5E-26 192.6 11.7 187 2-194 437-661 (876)
52 2ft3_A Biglycan; proteoglycan, 99.9 6.4E-22 2.2E-26 172.5 9.9 186 5-196 47-259 (332)
53 2z63_A TOLL-like receptor 4, v 99.9 1.8E-21 6.2E-26 181.4 13.6 181 38-224 345-536 (570)
54 4glp_A Monocyte differentiatio 99.9 6E-22 2E-26 171.2 9.6 193 12-209 89-303 (310)
55 2v9t_B SLIT homolog 2 protein 99.9 2.5E-21 8.5E-26 159.1 12.6 157 16-194 13-169 (220)
56 2o6s_A Variable lymphocyte rec 99.9 1.4E-21 4.9E-26 159.0 10.6 157 13-195 27-183 (208)
57 4ecn_A Leucine-rich repeat pro 99.9 6.1E-22 2.1E-26 191.6 9.8 189 1-196 334-637 (876)
58 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-23 2E-27 178.1 2.4 172 15-191 11-205 (317)
59 2z80_A TOLL-like receptor 2, v 99.9 1.1E-22 3.6E-27 179.0 3.6 191 2-195 88-319 (353)
60 3oja_B Anopheles plasmodium-re 99.9 4.1E-21 1.4E-25 180.3 14.3 182 5-191 65-292 (597)
61 3e6j_A Variable lymphocyte rec 99.8 9.2E-21 3.1E-25 156.6 13.6 156 16-194 21-176 (229)
62 2xot_A Amphoterin-induced prot 99.8 1.3E-21 4.6E-26 172.5 8.4 87 104-190 87-176 (361)
63 2o6s_A Variable lymphocyte rec 99.8 2.6E-20 8.8E-25 151.5 14.8 158 16-195 9-166 (208)
64 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-20 4E-25 177.3 14.3 205 6-234 391-597 (606)
65 2xot_A Amphoterin-induced prot 99.8 4.8E-21 1.7E-25 169.0 10.6 169 5-194 32-206 (361)
66 1h6u_A Internalin H; cell adhe 99.8 2.6E-20 8.8E-25 160.8 14.1 151 9-190 58-208 (308)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.1E-21 2.4E-25 177.4 11.4 71 126-196 350-422 (562)
68 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-21 1.4E-25 177.3 9.4 71 126-196 321-393 (520)
69 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-20 5E-25 173.6 13.0 165 37-224 321-486 (520)
70 4g8a_A TOLL-like receptor 4; l 99.8 6.4E-21 2.2E-25 179.5 10.9 170 5-195 45-219 (635)
71 4g8a_A TOLL-like receptor 4; l 99.8 1E-20 3.6E-25 178.1 12.2 209 9-223 366-584 (635)
72 2z63_A TOLL-like receptor 4, v 99.8 3.8E-21 1.3E-25 179.2 8.6 182 11-196 344-537 (570)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-20 6.7E-25 174.4 13.1 158 15-195 332-490 (562)
74 2z81_A CD282 antigen, TOLL-lik 99.8 1.5E-20 5.2E-25 174.5 12.1 162 5-195 324-491 (549)
75 2z81_A CD282 antigen, TOLL-lik 99.8 8.8E-21 3E-25 176.1 8.5 170 3-191 39-210 (549)
76 3oja_A Leucine-rich immune mol 99.8 1.2E-20 3.9E-25 172.9 8.7 180 2-190 46-250 (487)
77 4glp_A Monocyte differentiatio 99.8 4.2E-20 1.4E-24 159.6 11.3 183 2-190 103-307 (310)
78 4fmz_A Internalin; leucine ric 99.8 2E-19 6.9E-24 157.5 15.7 175 10-192 128-326 (347)
79 2xwt_C Thyrotropin receptor; s 99.8 2E-20 6.9E-25 155.5 8.8 155 26-190 23-193 (239)
80 1h6t_A Internalin B; cell adhe 99.8 2.1E-19 7.1E-24 153.8 14.8 168 10-190 42-213 (291)
81 4ezg_A Putative uncharacterize 99.8 6.5E-20 2.2E-24 148.0 11.0 155 10-191 40-195 (197)
82 2v70_A SLIT-2, SLIT homolog 2 99.8 8.8E-20 3E-24 149.8 11.5 159 42-224 13-171 (220)
83 1h6u_A Internalin H; cell adhe 99.8 2.9E-19 9.9E-24 154.2 14.8 154 6-191 78-231 (308)
84 2v9t_B SLIT homolog 2 protein 99.8 9.2E-20 3.1E-24 149.7 10.8 157 42-223 13-169 (220)
85 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.8E-24 154.9 12.1 182 15-210 25-210 (291)
86 1w8a_A SLIT protein; signaling 99.8 3.9E-20 1.3E-24 148.6 7.8 133 17-195 11-144 (192)
87 1xeu_A Internalin C; cellular 99.8 2.9E-19 1E-23 150.7 13.3 152 9-192 36-187 (263)
88 3e6j_A Variable lymphocyte rec 99.8 2.8E-19 9.4E-24 147.7 12.5 145 4-170 32-176 (229)
89 2ca6_A RAN GTPase-activating p 99.8 8.6E-21 3E-25 168.8 2.1 182 9-191 55-288 (386)
90 1m9s_A Internalin B; cell inva 99.8 7.9E-19 2.7E-23 164.2 14.4 170 10-192 39-212 (605)
91 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-18 4.9E-23 157.8 15.6 166 9-192 59-248 (457)
92 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.7E-23 152.9 13.3 170 10-190 173-346 (347)
93 1o6v_A Internalin A; bacterial 99.8 1.8E-18 6E-23 157.6 14.6 168 10-190 173-344 (466)
94 1o6v_A Internalin A; bacterial 99.8 4.1E-18 1.4E-22 155.2 16.7 168 10-190 64-256 (466)
95 1m9s_A Internalin B; cell inva 99.8 1.4E-18 4.9E-23 162.5 12.8 184 13-210 20-207 (605)
96 2wfh_A SLIT homolog 2 protein 99.8 5.2E-18 1.8E-22 136.3 13.7 131 17-194 13-143 (193)
97 3cvr_A Invasion plasmid antige 99.8 2.5E-18 8.6E-23 159.4 12.7 170 2-195 71-248 (571)
98 3goz_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 156.6 6.3 189 1-192 9-240 (362)
99 2ell_A Acidic leucine-rich nuc 99.8 5.1E-18 1.7E-22 133.2 11.4 137 13-195 23-164 (168)
100 3bz5_A Internalin-J, INLJ; leu 99.8 7.2E-18 2.5E-22 153.1 14.0 174 3-194 31-228 (457)
101 4ezg_A Putative uncharacterize 99.7 3.6E-18 1.2E-22 137.7 9.4 150 37-210 41-191 (197)
102 1jl5_A Outer protein YOPM; leu 99.7 1.1E-18 3.6E-23 158.5 6.8 171 4-190 24-208 (454)
103 4ay9_X Follicle-stimulating ho 99.7 5.2E-18 1.8E-22 148.9 10.5 181 5-190 23-215 (350)
104 1dce_A Protein (RAB geranylger 99.7 5.2E-20 1.8E-24 171.2 -3.0 175 11-194 346-550 (567)
105 2o6r_A Variable lymphocyte rec 99.7 2.5E-17 8.6E-22 130.3 12.6 134 16-195 9-142 (177)
106 2ast_B S-phase kinase-associat 99.7 1.5E-18 5.1E-23 151.2 5.7 181 3-187 83-282 (336)
107 2ast_B S-phase kinase-associat 99.7 1.8E-18 6.2E-23 150.7 6.2 178 7-188 61-258 (336)
108 3goz_A Leucine-rich repeat-con 99.7 6.6E-19 2.3E-23 155.3 3.0 182 8-191 44-267 (362)
109 3cvr_A Invasion plasmid antige 99.7 1.2E-17 3.9E-22 155.0 11.1 163 9-195 49-224 (571)
110 2ca6_A RAN GTPase-activating p 99.7 3.5E-18 1.2E-22 151.9 6.7 186 5-192 23-259 (386)
111 2je0_A Acidic leucine-rich nuc 99.7 1.9E-17 6.7E-22 127.2 9.6 129 13-186 16-149 (149)
112 2wfh_A SLIT homolog 2 protein 99.7 3.1E-17 1E-21 131.8 11.0 114 104-223 30-143 (193)
113 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.5E-22 132.2 10.2 122 4-170 21-143 (192)
114 1xeu_A Internalin C; cellular 99.7 3.2E-18 1.1E-22 144.3 4.9 167 12-211 17-183 (263)
115 4b8c_D Glucose-repressible alc 99.7 3.9E-18 1.3E-22 163.1 6.1 158 16-196 193-360 (727)
116 1jl5_A Outer protein YOPM; leu 99.7 2.4E-17 8.1E-22 149.6 10.8 78 106-191 318-410 (454)
117 3g06_A SSPH2 (leucine-rich rep 99.7 9.3E-17 3.2E-21 150.5 13.4 166 13-195 120-302 (622)
118 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 7E-21 148.2 14.6 64 5-81 54-117 (622)
119 4ay9_X Follicle-stimulating ho 99.7 9.7E-18 3.3E-22 147.2 3.7 193 5-203 44-249 (350)
120 1dce_A Protein (RAB geranylger 99.7 3.1E-17 1.1E-21 152.5 4.6 161 2-184 397-567 (567)
121 1a9n_A U2A', U2A'; complex (nu 99.7 2.9E-16 9.8E-21 124.1 9.1 85 104-190 63-153 (176)
122 3g39_A Variable lymphocyte rec 99.7 4.2E-16 1.5E-20 122.5 10.0 92 104-195 29-120 (170)
123 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.9E-21 153.0 6.9 154 14-195 173-334 (727)
124 2ell_A Acidic leucine-rich nuc 99.6 6.5E-16 2.2E-20 121.1 9.5 118 4-166 39-160 (168)
125 2o6r_A Variable lymphocyte rec 99.6 1.7E-15 5.9E-20 119.7 11.8 115 104-223 27-141 (177)
126 1z7x_W Ribonuclease inhibitor; 99.6 4.5E-17 1.5E-21 147.8 2.8 177 13-191 198-412 (461)
127 1ds9_A Outer arm dynein; leuci 99.6 1.5E-18 5.3E-23 139.9 -6.5 155 10-190 14-185 (198)
128 2r9u_A Variable lymphocyte rec 99.6 2E-15 7E-20 119.0 10.1 90 105-194 33-122 (174)
129 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 116.2 8.5 115 2-161 29-148 (149)
130 1ds9_A Outer arm dynein; leuci 99.6 2.2E-17 7.4E-22 133.2 -3.3 140 2-167 30-186 (198)
131 1z7x_W Ribonuclease inhibitor; 99.6 1.8E-16 6.1E-21 143.9 2.2 184 6-191 48-270 (461)
132 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4.2E-20 120.5 5.8 134 9-167 14-154 (176)
133 3sb4_A Hypothetical leucine ri 99.6 3E-15 1E-19 130.1 8.5 177 13-195 48-314 (329)
134 3g39_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 109.7 10.4 109 107-223 11-119 (170)
135 3un9_A NLR family member X1; l 99.5 6.2E-16 2.1E-20 136.6 -2.2 168 13-191 71-253 (372)
136 2r9u_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 107.0 10.6 108 108-223 15-122 (174)
137 2ifg_A High affinity nerve gro 99.4 4.6E-13 1.6E-17 117.0 8.5 104 43-166 11-116 (347)
138 3sb4_A Hypothetical leucine ri 99.4 2E-13 6.8E-18 118.6 5.8 166 13-184 100-328 (329)
139 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.7E-17 114.0 9.7 93 101-194 27-120 (347)
140 3ogk_B Coronatine-insensitive 99.3 1.4E-13 4.9E-18 128.6 1.1 63 128-190 462-526 (592)
141 3ogk_B Coronatine-insensitive 99.3 2.4E-13 8.1E-18 127.1 1.0 186 4-192 283-503 (592)
142 4fdw_A Leucine rich hypothetic 99.2 3.1E-11 1.1E-15 107.5 10.3 153 8-185 174-331 (401)
143 2p1m_B Transport inhibitor res 99.2 2.3E-12 7.7E-17 120.5 2.4 182 6-190 281-494 (594)
144 3un9_A NLR family member X1; l 99.2 5.1E-12 1.7E-16 111.5 2.9 137 39-191 71-225 (372)
145 2p1m_B Transport inhibitor res 99.2 5.6E-12 1.9E-16 117.8 1.9 127 10-137 101-243 (594)
146 4fdw_A Leucine rich hypothetic 99.0 1.3E-09 4.6E-14 96.9 10.1 177 8-196 130-317 (401)
147 2ra8_A Uncharacterized protein 98.9 1E-09 3.4E-14 96.2 5.1 164 7-190 132-320 (362)
148 2ra8_A Uncharacterized protein 98.9 3.1E-10 1.1E-14 99.5 0.7 167 5-188 163-341 (362)
149 3rw6_A Nuclear RNA export fact 98.8 2.5E-09 8.4E-14 89.4 4.8 80 102-183 167-257 (267)
150 1io0_A Tropomodulin; LRR prote 98.8 3.3E-09 1.1E-13 84.0 3.6 87 104-190 64-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.7 2.5E-09 8.4E-14 84.8 1.0 64 103-166 91-164 (185)
152 3rw6_A Nuclear RNA export fact 98.5 1.7E-08 5.7E-13 84.3 1.2 84 110-195 148-238 (267)
153 4fs7_A Uncharacterized protein 98.3 9.6E-07 3.3E-11 78.2 7.9 171 8-186 156-375 (394)
154 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.3E-12 73.1 1.6 84 105-188 61-150 (176)
155 4h09_A Hypothetical leucine ri 98.0 1.5E-05 5.3E-10 69.9 8.5 155 9-187 189-343 (379)
156 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.5E-11 66.3 2.6 61 104-164 84-150 (176)
157 4fs7_A Uncharacterized protein 98.0 1.9E-05 6.7E-10 69.7 8.2 169 8-186 65-239 (394)
158 4gt6_A Cell surface protein; l 97.8 2.1E-05 7.2E-10 69.5 5.9 129 37-189 262-390 (394)
159 4h09_A Hypothetical leucine ri 97.8 6E-05 2E-09 66.1 8.6 164 7-195 151-326 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.7 1.9E-05 6.4E-10 62.5 3.9 87 104-190 69-170 (197)
161 4gt6_A Cell surface protein; l 97.7 3.6E-05 1.2E-09 68.0 6.1 160 8-190 199-370 (394)
162 3rfe_A Platelet glycoprotein I 97.7 0.00011 3.7E-09 54.3 6.6 60 133-194 12-72 (130)
163 3rfe_A Platelet glycoprotein I 97.4 0.00015 5.2E-09 53.4 4.7 56 17-77 11-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.1E-09 57.9 4.1 85 103-187 39-136 (197)
165 2l2t_A Receptor tyrosine-prote 83.6 1.2 4E-05 25.4 3.0 16 252-267 12-27 (44)
166 2l2t_A Receptor tyrosine-prote 83.5 0.82 2.8E-05 26.1 2.4 19 254-272 10-28 (44)
167 2ks1_B Epidermal growth factor 83.1 1.1 3.7E-05 25.6 2.8 18 252-269 13-30 (44)
168 2ks1_B Epidermal growth factor 82.3 0.69 2.4E-05 26.4 1.8 15 256-270 13-27 (44)
169 2klu_A T-cell surface glycopro 78.5 2.5 8.6E-05 26.1 3.4 16 255-270 13-28 (70)
170 2jwa_A Receptor tyrosine-prote 72.4 4.3 0.00015 23.0 3.1 11 259-269 20-30 (44)
171 2k1k_A Ephrin type-A receptor 69.7 2.6 8.9E-05 23.2 1.8 10 256-265 16-25 (38)
172 2lz0_A Uncharacterized protein 64.1 21 0.0007 24.2 6.0 45 117-162 8-52 (100)
173 2knc_A Integrin alpha-IIB; tra 55.8 7.3 0.00025 23.2 2.1 23 248-270 11-33 (54)
174 2knc_B Integrin beta-3; transm 50.4 3.8 0.00013 26.7 0.3 8 253-260 14-21 (79)
175 2k9y_A Ephrin type-A receptor 49.8 12 0.00043 20.5 2.4 10 253-262 16-25 (41)
176 2lz0_A Uncharacterized protein 44.1 30 0.001 23.4 4.1 47 140-187 7-53 (100)
177 2l8s_A Integrin alpha-1; trans 34.0 14 0.00048 21.9 0.9 22 249-270 9-30 (54)
178 2k1a_A Integrin alpha-IIB; sin 33.7 44 0.0015 18.6 2.9 24 248-271 9-32 (42)
179 2klu_A T-cell surface glycopro 32.8 24 0.00082 21.8 1.8 21 252-272 13-33 (70)
180 2l34_A TYRO protein tyrosine k 31.9 36 0.0012 17.9 2.2 17 255-271 11-27 (33)
181 2jp3_A FXYD domain-containing 23.8 1.2E+02 0.004 18.8 3.8 28 245-272 10-37 (67)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.3e-32 Score=261.80 Aligned_cols=127 Identities=39% Similarity=0.651 Sum_probs=118.5
Q ss_pred HHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCC
Q 046279 101 YKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALA 180 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 180 (300)
+..+++|+.||+++|++++.+|..++.+++|+.|++++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCCCCCC
Q 046279 181 SLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLP 228 (300)
Q Consensus 181 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~~~~~ 228 (300)
+||+++|+++|.+|...++..+....+.||+++||.|+. .|......
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence 999999999999999999999999999999999999987 89765443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.3e-30 Score=222.66 Aligned_cols=214 Identities=28% Similarity=0.457 Sum_probs=154.4
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc-ccC
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ-YIG 81 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~-~l~ 81 (300)
+|.+|.+|+++++|++|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|.. +..+++|+.|++++|.+. .++
T Consensus 90 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp ESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC
T ss_pred cccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC
Confidence 44555556666666666666666655555555 55666666666666666555544 556666666666666654 222
Q ss_pred ----Cce-eeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCC
Q 046279 82 ----GFY-YLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMT 153 (300)
Q Consensus 82 ----~~~-~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 153 (300)
... .+..+.+..+ +..+..+..+. |++|++++|.+++..|..+..+++|+.|++++|.+++..|. +..++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 111 2233333322 22334445555 88888888888888888888899999999999999866555 78889
Q ss_pred CCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCC
Q 046279 154 ALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222 (300)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C 222 (300)
+|++|++++|.+++.+|..+..+++|++|++++|+++|.+|....+..+..+.+.+|+.+|+.|.. .|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999999999999999999999877888888899999999998765 46
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=237.32 Aligned_cols=209 Identities=22% Similarity=0.254 Sum_probs=127.8
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..|.+|+++++|++|+|++|.+++..+..+ ..+++|++|++++|.+. .++...|..+++|+.|++++|.+..++
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCccc
Confidence 455566677777777777777777776666666 66777777777777776 555455677778888888877776655
Q ss_pred CceeeeeEEEeecCch------------------------hHHHHhcccccEEEccCCcCCcCCC---------------
Q 046279 82 GFYYLDSVTVAMKGQD------------------------VLLYKILIIFRTLDFSSNRFHGEVP--------------- 122 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~--------------- 122 (300)
....+..+.+..+.+. ...+..+++|+.|++++|.+++..+
T Consensus 379 ~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 4333333333222111 1123356777777777777764322
Q ss_pred ---------------hhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccc
Q 046279 123 ---------------EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 123 ---------------~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 187 (300)
..|.++++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 2344455555566666665555555566666666666666666654444433 56666666666
Q ss_pred cccccCCCCCCCCCCCCCcccCCcCCCCCC
Q 046279 188 QLRGRIPRGNQFNTFDNNSYIGNIHLCGEP 217 (300)
Q Consensus 188 ~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~ 217 (300)
++++..|.. +..+..+.+.+|+..|+++
T Consensus 537 ~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 QLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred cCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 666655543 3455566677777777554
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.8e-26 Score=207.60 Aligned_cols=210 Identities=17% Similarity=0.120 Sum_probs=167.8
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..|.+|+++++|++|+|++|.+++..+..+ .++++|++|+|++|.++ .+|...|..+++|+.|++++|.+..++
T Consensus 87 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CceECHHHcCCCCCCCEEECCCCccCCcChhhc--cCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeC
Confidence 566678899999999999999999998777777 78999999999999999 777777889999999999999987665
Q ss_pred C-----ceeeeeEEEee----cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCC
Q 046279 82 G-----FYYLDSVTVAM----KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNM 152 (300)
Q Consensus 82 ~-----~~~l~~~~~~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 152 (300)
. ...+..+.+.. ..+....+..+++|++|++++|.+++. | .+..+++|++|++++|.+++..|..|..+
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence 4 22344444433 223444677899999999999999954 4 47889999999999999998889999999
Q ss_pred CCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCC-CCCCCCCCcccCCcCCCCC
Q 046279 153 TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGN-QFNTFDNNSYIGNIHLCGE 216 (300)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~l~~~ 216 (300)
++|+.|++++|++++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+|+..|++
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999999999999999889999999999999999999995444321 2333444444455444443
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=206.08 Aligned_cols=210 Identities=20% Similarity=0.172 Sum_probs=162.0
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..+.+|+++++|++|+|++|.+++..+..+ .++++|++|+|++|.++ .+|...|..+++|+.|++++|.+..++
T Consensus 76 i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~ 152 (440)
T 3zyj_A 76 IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF--NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIP 152 (440)
T ss_dssp CCEECTTTTSSCSSCCEEECCSSCCCEECGGGG--TTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEEC
T ss_pred CCeeCHHHhhCCCCCCEEECCCCcCCccChhhc--cCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccC
Confidence 445566788888999999999998887666666 77888999999999988 777666888899999999998886654
Q ss_pred C-----ceeeeeEEEeec----CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCC
Q 046279 82 G-----FYYLDSVTVAMK----GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNM 152 (300)
Q Consensus 82 ~-----~~~l~~~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 152 (300)
. ...+..+.+..+ .+....+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+
T Consensus 153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC
Confidence 3 223444444432 234446778999999999999998 455 47889999999999999998888999999
Q ss_pred CCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC-CCCCCCCCCcccCCcCCCCC
Q 046279 153 TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG-NQFNTFDNNSYIGNIHLCGE 216 (300)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~~~ 216 (300)
++|+.|++++|++++..+..|..+++|++|++++|++++..+.. ..+..+..+.+.+|++.|++
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 99999999999999888999999999999999999999544432 12334444444555544443
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9e-26 Score=217.74 Aligned_cols=192 Identities=29% Similarity=0.410 Sum_probs=140.1
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc-cc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ-YI 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~-~l 80 (300)
++|.+|.+|+.+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|.. +..+++|+.|++++|.+. .+
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCC
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcC
Confidence 345566666666666666666666666566555 55667777777777777666655 667777777777777764 22
Q ss_pred C----CceeeeeEEEeecC---chhHHHHhcccccEEEccCCcCCcCCChhh----------------------------
Q 046279 81 G----GFYYLDSVTVAMKG---QDVLLYKILIIFRTLDFSSNRFHGEVPEVL---------------------------- 125 (300)
Q Consensus 81 ~----~~~~l~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------------------------- 125 (300)
+ .+..+..+.+..+. ..+..+..+++|+.|++++|.+++.+|..+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 2 22233444444333 344556678888888888888877666543
Q ss_pred ------------------------------------------cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCC
Q 046279 126 ------------------------------------------GNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 126 ------------------------------------------~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 163 (300)
+.+++|+.||+++|.++|.+|..++.++.|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 23467889999999999999999999999999999999
Q ss_pred ccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 164 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
.+++.+|..++.+++|+.||+++|+++|.+|..
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999999999999999999999999999999964
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.9e-25 Score=186.39 Aligned_cols=193 Identities=25% Similarity=0.381 Sum_probs=153.5
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
.+|..+. ++|++|+|++|.+++..+..+ ..+++|++|++++|.++ .+|...|..+++|+.|++++|.+..++.
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~-- 102 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPI-- 102 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSS--SSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCT--
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHh--cCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCH--
Confidence 3555443 578999999999887655566 77889999999999988 7777777888999999999888766542
Q ss_pred eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCc
Q 046279 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK 164 (300)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 164 (300)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 103 --------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 103 --------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp --------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 334568899999999999998888888999999999999999996666668899999999999999
Q ss_pred cCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 165 LHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 165 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+++..+..|..+++|++|++++|.+++ +|.. .+..........+.+||+.|+|.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG----AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT----TTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCc-CCHH----HhccccCCCEEEecCCCeeCCCc
Confidence 998777788899999999999999984 4432 22223333455667777777775
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.3e-25 Score=191.90 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=136.5
Q ss_pred CCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccc-ccccC-----Cceee
Q 046279 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFG-LQYIG-----GFYYL 86 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~l~-----~~~~l 86 (300)
.++|++|++++|.+++..+..+ ..+++|++|++++|.++ .++...+..+++|+.|++++|. +..++ ....+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCccCHHHc--ccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3567777777777766544555 56667777777777776 3322336666777777777765 54332 12233
Q ss_pred eeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCC
Q 046279 87 DSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 87 ~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 163 (300)
..+.+..+ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 33333322 333445667888999999999888766677888889999999999888655566888889999999999
Q ss_pred ccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 164 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
.+++..|..+..+++|++|++++|.+++..+. .+..........+.+|++.|+|..
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-----ALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-----HHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccccCHhHccCcccccEeeCCCCcCCcCCHH-----HcccCcccCEEeccCCCccCCCCc
Confidence 98888888888888999999999988854332 122222233445556666666653
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.6e-25 Score=203.44 Aligned_cols=116 Identities=28% Similarity=0.417 Sum_probs=61.8
Q ss_pred hcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeE
Q 046279 103 ILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASL 182 (300)
Q Consensus 103 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 182 (300)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 34455555555555554445555555555555555555554445555555555666666665555555555555666666
Q ss_pred EcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 183 NLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 183 ~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
++++|++++ +|.. .+..........+.+|++.|+|.
T Consensus 377 ~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSC-CCTT----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccc-CCHh----HhccCCcccEEEccCCCcccCCC
Confidence 666666553 2221 12222223344556666666665
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=9.9e-25 Score=190.14 Aligned_cols=186 Identities=18% Similarity=0.211 Sum_probs=152.4
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc-cccCC-
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL-QYIGG- 82 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l-~~l~~- 82 (300)
.+|..++.+++|++|+|++|.++ .+|..+ ..+++|++|+|++|.++ .+|.. +..+++|+.|++++|++ +.++.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETTCCCCCSC
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHH--hccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCCccccChh
Confidence 68888999999999999999998 688877 88999999999999999 89876 88999999999999654 33332
Q ss_pred ------------ceeeeeEEEeecCc--hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCcc
Q 046279 83 ------------FYYLDSVTVAMKGQ--DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPAS 148 (300)
Q Consensus 83 ------------~~~l~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 148 (300)
...+..+.+..+.+ .+..+..+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence 22344444444433 22346678889999999999884 6667888899999999998888888888
Q ss_pred ccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 149 LGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 149 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 888999999999998888888888889999999999999888888864
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.2e-25 Score=194.68 Aligned_cols=190 Identities=22% Similarity=0.370 Sum_probs=149.8
Q ss_pred Ccc--ccchhhhcCCCCCEEEccC-CcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc
Q 046279 2 ISD--TFPCWLGSLSELKILVLRS-NRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ 78 (300)
Q Consensus 2 l~g--~ip~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 78 (300)
++| .+|.+|+++++|++|++++ |.+.+.+|..+ ..+++|++|++++|.+++.+|.. +..+++|+.|++++|.+.
T Consensus 62 l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccC
Confidence 567 8999999999999999995 99999899888 88999999999999999888876 889999999999999986
Q ss_pred -ccC----CceeeeeEEEeecCch---hHHHHhcc-cccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccc
Q 046279 79 -YIG----GFYYLDSVTVAMKGQD---VLLYKILI-IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASL 149 (300)
Q Consensus 79 -~l~----~~~~l~~~~~~~~~~~---~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 149 (300)
.++ .+..+..+.+..+.+. +..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 232 2334445555444432 33445555 788888888888877787777776 8888888888887777778
Q ss_pred cCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 150 GNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
..+++|+.|++++|.+++..|. +..+++|++|++++|.+++.+|..
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 8888888888888888765554 677788888888888888777753
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.7e-24 Score=184.19 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=153.2
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---cee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG---FYY 85 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~---~~~ 85 (300)
.++.+++++++++++|.++. +|..+ .++++.|++++|.++ .++...+..+++|+.|++++|.+..++. ...
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~----~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDL----PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCC----CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTT
T ss_pred cccccCCccEEECCCCCCCc-CCCCC----CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCc
Confidence 36678888888888888875 55554 367888888888887 5544557888888888888888765543 223
Q ss_pred eeeEEEeecCch--hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCC
Q 046279 86 LDSVTVAMKGQD--VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 86 l~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 163 (300)
+..+.+..+.+. +..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 444444444332 223466889999999999999777788999999999999999999777777889999999999999
Q ss_pred ccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 164 KLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 164 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
++++..+..+..+++|++|++++|+++ .+|.... .........+.+||+.|+|.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-----~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-----GSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-----TTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-----ccccCCeEEeCCCCccCcCc
Confidence 999776677888999999999999999 6675421 11223445667777777774
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.7e-24 Score=181.64 Aligned_cols=199 Identities=19% Similarity=0.213 Sum_probs=151.7
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
.+|..+. ++++.|+|++|.+++..+..+ .++++|++|+|++|.++ .++...+..+++|+.|++++|.+..++.
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 100 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATF--RGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPL-- 100 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT--
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHh--cCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccCh--
Confidence 4565443 579999999999988777767 78899999999999998 5555558889999999999998876542
Q ss_pred eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCc
Q 046279 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK 164 (300)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 164 (300)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 101 --------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 101 --------------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp --------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 234568899999999999997777778899999999999999997666688999999999999999
Q ss_pred cCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCC------CCCcccCCcCCCCCCCCCCCCCC
Q 046279 165 LHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTF------DNNSYIGNIHLCGEPLTATCSND 225 (300)
Q Consensus 165 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~------~~~~~~~n~~l~~~~~~~~C~~~ 225 (300)
+++..+..+..+++|++|++++|++++.......+..+ ......+ ..+++.|....|..+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTG-QNLHESPDGVTCSDG 232 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccC-cccccCCCcCccCCC
Confidence 99877778899999999999999998774432111111 0011112 235667777788765
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6e-25 Score=187.68 Aligned_cols=191 Identities=22% Similarity=0.194 Sum_probs=161.8
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCC-CcccCcHHHHhCccccccccccccccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNE-FTGSLPRTIFVSMEAMKIVDEMEFGLQYI 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~lp~~~~~~l~~L~~L~l~~n~l~~l 80 (300)
|++..|.+|+.+++|++|++++|.+++..+..+ ..+++|++|++++|. +. .++...+..+++|+.|++++|.+..+
T Consensus 44 i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCccCHHHcccCCCCCEEECCCCccceeCHhhc--CCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEE
Confidence 455556789999999999999999998777777 789999999999997 76 66555588999999999999998655
Q ss_pred CC-----ceeeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCC
Q 046279 81 GG-----FYYLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNM 152 (300)
Q Consensus 81 ~~-----~~~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 152 (300)
+. ...+..+.+..+ ......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 32 334555555444 3444557789999999999999997777789999999999999999998889999999
Q ss_pred CCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 153 TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
++|+.|++++|.+++..+..+..+++|++|++++|++.+.++.
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 9999999999999987778899999999999999999987764
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=4.8e-25 Score=190.16 Aligned_cols=174 Identities=21% Similarity=0.241 Sum_probs=93.3
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCc--ccCcHHHHhCcccccccccccccccccCC----ceeee
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFT--GSLPRTIFVSMEAMKIVDEMEFGLQYIGG----FYYLD 87 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~lp~~~~~~l~~L~~L~l~~n~l~~l~~----~~~l~ 87 (300)
++|++|+|++|.++...+..+ ..+++|++|++++|.++ +..|.. +..+++|+.|++++|.+..++. ...+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHh--hccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCC
Confidence 467777777777765333334 56677777777777766 112333 4456667777777666544322 11222
Q ss_pred eEEEeec---Cchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCC-CCCccccCCCCCCEEeCCC
Q 046279 88 SVTVAMK---GQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSF 162 (300)
Q Consensus 88 ~~~~~~~---~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~ 162 (300)
.+.+..+ .... ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 2222222 2221 234445556666666665555555555555555555555555553 3445555555555555555
Q ss_pred CccCccCchhhhcCCCCCeEEccccccc
Q 046279 163 NKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 163 N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
|.+++..|..+..+++|++|++++|.++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 5555544555555555555555555555
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.2e-23 Score=178.24 Aligned_cols=175 Identities=19% Similarity=0.213 Sum_probs=152.5
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..+.+|+++++|++|+|++|.++...+..+ ..+++|++|++++|.++ .+|...+..+++|+.|++++|.+..++
T Consensus 49 l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 49 LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeC
Confidence 445556689999999999999999987555555 77999999999999999 787777899999999999999987664
Q ss_pred CceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 82 GFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
. ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 126 ~----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 126 P----------------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp T----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred H----------------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 3 234568999999999999997777778999999999999999997777779999999999999
Q ss_pred CCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+|.+++..+..+..+++|+.|++++|++.+.++.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999977777788999999999999999988763
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=191.34 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=166.2
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..+.+|+++++|++|++++|.+++..+..+ .++++|++|++++|.++ .+|...+..+++|+.|++++|.+..++
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSF--SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhc--CCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccC
Confidence 344445589999999999999999998777777 88999999999999999 888887899999999999999987665
Q ss_pred C------ceeeeeEEEeec----CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCc-ccc
Q 046279 82 G------FYYLDSVTVAMK----GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPA-SLG 150 (300)
Q Consensus 82 ~------~~~l~~~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~ 150 (300)
. ...+..+.+..+ ...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|. .+.
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~ 219 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD 219 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH
T ss_pred chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhh
Confidence 4 334566666554 233456778899999999999999888999999999999999999987 4444 345
Q ss_pred CCCCCCEEeCCCCccCcc-------------------------------CchhhhcCCCCCeEEcccccccccCCCCCCC
Q 046279 151 NMTALESLDLSFNKLHGI-------------------------------IPEQLLAVTALASLNLSYNQLRGRIPRGNQF 199 (300)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~-------------------------------~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 199 (300)
.+++|+.|++++|.+++. +|+.+..+++|++|++++|.++ .+|...
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~-- 296 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI-- 296 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT--
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH--
Confidence 688999999999988863 3556788999999999999999 666531
Q ss_pred CCCCCCcccCCcCCCCCCCCCCCC
Q 046279 200 NTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 200 ~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+..........+.+|++.|+|.
T Consensus 297 --~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 297 --FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --TTTCTTCCEEECCSSCBCCCHH
T ss_pred --HhcCCCCCEEEeeCCCccCcCC
Confidence 1222233344555666666663
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=194.52 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=115.1
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC-
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG- 82 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~- 82 (300)
+..|..|.++++|++|++++|.+++..+..+ .++++|+.|++++|.++ .+|...+..+++|+.|++++|.+..++.
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred cCChhHccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 3344455555555555555555554444444 55666666666666666 5555556666667777766666644332
Q ss_pred ----ceeeeeEEEeecCchh---HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 046279 83 ----FYYLDSVTVAMKGQDV---LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155 (300)
Q Consensus 83 ----~~~l~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 155 (300)
...+..+.+..+.... .......+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 1223333333322111 111113367777777777775444567778888888888888876666677777888
Q ss_pred CEEeCCCCccCccCchhhhcCCCCCeEEccccccccc
Q 046279 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 156 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
+.|++++|++++..|..|..+++|+.|++++|.+++.
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 8888888888777777777788888888888887743
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.9e-24 Score=192.84 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=127.5
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC-
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG- 81 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~- 81 (300)
++..|.+|.++++|++|+|++|.+++..|..+ .++++|++|+|++|.++ .+|...|..+++|+.|++++|.+..+.
T Consensus 45 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 45 KTLNQDEFASFPHLEELELNENIVSAVEPGAF--NNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred ceECHhHccCCCCCCEEECCCCccCEeChhhh--hCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCCh
Confidence 34445556666666666666666655445544 55555666666665555 454444555555555555555543221
Q ss_pred ----------------------------CceeeeeEEEee---cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCC
Q 046279 82 ----------------------------GFYYLDSVTVAM---KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKS 130 (300)
Q Consensus 82 ----------------------------~~~~l~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 130 (300)
.+..+..+.+.. .......+..+++|+.|++++|.+.+..+..|..+++
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 111222222222 2223334455566666666666655544444444444
Q ss_pred ------------------------CCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccc
Q 046279 131 ------------------------LKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSY 186 (300)
Q Consensus 131 ------------------------L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 186 (300)
|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 44444444555533334678899999999999999988888899999999999999
Q ss_pred ccccccCCCCC-CCCCCCC------------------CcccCCcCCCCCCCCCCCCC
Q 046279 187 NQLRGRIPRGN-QFNTFDN------------------NSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 187 N~l~~~~p~~~-~~~~~~~------------------~~~~~n~~l~~~~~~~~C~~ 224 (300)
|.+++..|... ....+.. ........+.+||+.|+|..
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 99997766431 1111111 11223345677888888864
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.3e-24 Score=180.12 Aligned_cols=207 Identities=25% Similarity=0.312 Sum_probs=127.5
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG--- 82 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~--- 82 (300)
+|..+. ++|++|++++|.+++..+..+ .++++|++|++++|.++ .++...+..+++|+.|++++|.+..++.
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTT--TTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHh--ccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 555442 468888888888877555555 67788888888888887 5555557778888888888887754432
Q ss_pred --ceeeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcC-CChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 046279 83 --FYYLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGE-VPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALE 156 (300)
Q Consensus 83 --~~~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 156 (300)
...+..+.+..+ ......+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 122333332222 22222345567777777777777653 466677777777777777777755555555555555
Q ss_pred ----EEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 157 ----SLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 157 ----~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
.|++++|.+++..+..+. ..+|++|++++|.+++. |.. .+..........+.+|++.|+|.
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~-~~~----~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSV-PDG----IFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCC-CTT----TTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccceeeecCCCcccccCccccC-CCcccEEECCCCceeec-CHh----HhcccccccEEEccCCcccccCC
Confidence 677777777654444333 34677788888877743 332 12223333445666677777775
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=3.8e-24 Score=208.40 Aligned_cols=216 Identities=17% Similarity=0.220 Sum_probs=145.8
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
+++..|..|+.+++|+.|+|++|.+++..+..+ .++++|++|+|++|.++ .++...+..+++|+.|++++|.+..++
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 344556777888888888888888887666666 77888888888888887 443334778888888888888876554
Q ss_pred C-----ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCC----------------------hhhcCCCCCCEE
Q 046279 82 G-----FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVP----------------------EVLGNFKSLKVL 134 (300)
Q Consensus 82 ~-----~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------------~~~~~l~~L~~L 134 (300)
. ...+..+.+..+.+.. +..+++|+.|++++|+++. +| ..+..+++|+.|
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L 431 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTT--IHFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCC--CSSCCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCc--ccCCCCcchhccCCCCccc-ccccccccceeecccCccccCchhhhhhcCCcccee
Confidence 3 3345555555554332 1125556666665555542 22 124477888888
Q ss_pred eCCCCCCCCCC------------------------------CccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEc
Q 046279 135 NLSHNSLTGNI------------------------------PASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNL 184 (300)
Q Consensus 135 ~ls~n~l~~~~------------------------------p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 184 (300)
++++|.+++.. +..|..+++|+.|+|++|.+++..|..+..+++|+.|++
T Consensus 432 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp EEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEE
T ss_pred eCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeEC
Confidence 88888876321 234566788888889999888888888899999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcc---------------cCCcCCCCCCCCCCCCC
Q 046279 185 SYNQLRGRIPRGNQFNTFDNNSY---------------IGNIHLCGEPLTATCSN 224 (300)
Q Consensus 185 ~~N~l~~~~p~~~~~~~~~~~~~---------------~~n~~l~~~~~~~~C~~ 224 (300)
++|.+++..|.... ..+..+.. .....+.+||+.|+|..
T Consensus 512 s~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 512 NSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp ESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 99999965443321 22322211 22345678999999974
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=8.5e-23 Score=177.93 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=135.7
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..+.+|+++++|++|+|++|.+++..|..+ ..+++|++|++++|.++ .+|..+ .++|+.|++++|.+..++
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 64 ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVR 137 (330)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBC
T ss_pred CCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCEEECCCCcCC-ccChhh---cccccEEECCCCcccccC
Confidence 455556688999999999999999988777777 78899999999999988 777653 267888888888776543
Q ss_pred C-----ceeeeeEEEeecCc-----hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccC
Q 046279 82 G-----FYYLDSVTVAMKGQ-----DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGN 151 (300)
Q Consensus 82 ~-----~~~l~~~~~~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 151 (300)
. ...+..+.+..+.+ ....+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..|..+..
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 2 23344444444433 34456677888888888888873 444432 67888888888887666777778
Q ss_pred CCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 152 MTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 888888888888887766667777888888888888887 5554
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.9e-23 Score=174.25 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=85.6
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce-----
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY----- 84 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~----- 84 (300)
+..+++|+.|++++|.++.. ..+ ..+++|++|++++|.++ .++ . +..+++|+.|++++|.+..++...
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l--~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGI--QYLPNVRYLALGGNKLH-DIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTG--GGCTTCCEEECTTSCCC-CCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcccc--ccc--ccCCCCcEEECCCCCCC-Cch-h-hcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 34566666666666666542 223 45666666666666666 343 2 566666666666666665443210
Q ss_pred eeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 85 YLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 85 ~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
.+..+.+..+ ......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 0111111100 1111122334445555555555544444444444555555555555544333334444555555555
Q ss_pred CCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
+|.+++..+..+..+++|++|++++|++.|.+|
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 555544444444444555555555555544444
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.7e-23 Score=180.19 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=158.0
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHH--------HhCcccccccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTI--------FVSMEAMKIVDEM 73 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~--------~~~l~~L~~L~l~ 73 (300)
|+ .+|.+|+.+++|++|+|++|.++ .+|..+ ..+++|++|++++|.+.+.+|..+ +..+++|+.|+++
T Consensus 116 l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred cc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence 44 78999999999999999999998 577777 789999999999988887888763 2348999999999
Q ss_pred cccccccCC----ceeeeeEEEeecCch--hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCc
Q 046279 74 EFGLQYIGG----FYYLDSVTVAMKGQD--VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPA 147 (300)
Q Consensus 74 ~n~l~~l~~----~~~l~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 147 (300)
+|.+..++. +..+..+.+..+.+. +..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|.
T Consensus 192 ~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp EECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 999876653 234555555554432 22467799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 148 SLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 148 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.+..+++|++|++++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999988776
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.8e-22 Score=171.29 Aligned_cols=197 Identities=19% Similarity=0.256 Sum_probs=151.2
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---ceeeeeEE
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG---FYYLDSVT 90 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~---~~~l~~~~ 90 (300)
..+..+++..+.+.+.. .. ..+++|+.|++++|.+. .++. +..+++|+.|++++|.+..++. ...+..+.
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~--~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CH--HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred HHHHHHHhcCccccccc--cc--ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEE
Confidence 34556677777776533 22 56899999999999998 7764 7889999999999999876543 23444555
Q ss_pred Eeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCc
Q 046279 91 VAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG 167 (300)
Q Consensus 91 ~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 167 (300)
+..+ ......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 4443 4455557789999999999999998777788999999999999999997777778899999999999999998
Q ss_pred cCchhhhcCCCCCeEEcccccccccCCCC-CCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 168 IIPEQLLAVTALASLNLSYNQLRGRIPRG-NQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 168 ~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
..+..+..+++|++|++++|.+++..|.. ..+..+.. ..+.+|++.|.|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~------L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY------IWLHDNPWDCTCP 222 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE------EECCSSCBCCCTT
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE------EEccCCCccccCc
Confidence 77777899999999999999999765542 12333333 3444555555554
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.7e-23 Score=195.06 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=81.4
Q ss_pred HHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCC
Q 046279 101 YKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALA 180 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 180 (300)
+..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 4557788888888888887778888888888888888888884 5666677888888888888887 5677778888888
Q ss_pred eEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCC
Q 046279 181 SLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATC 222 (300)
Q Consensus 181 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C 222 (300)
.|++++|.+++. |- ..+..+.. ..+.+|++.|+|
T Consensus 328 ~L~L~~N~l~~~-~~-~~~~~L~~------L~l~~N~~~~~~ 361 (597)
T 3oja_B 328 NLYLDHNSIVTL-KL-STHHTLKN------LTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCCCCC-CC-CTTCCCSE------EECCSSCEEHHH
T ss_pred EEECCCCCCCCc-Ch-hhcCCCCE------EEeeCCCCCChh
Confidence 888888888743 31 12233333 445555555544
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=186.39 Aligned_cols=190 Identities=21% Similarity=0.228 Sum_probs=159.6
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc-ccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF-GLQYI 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n-~l~~l 80 (300)
|++..|.+|.++++|++|+|++|+++...+..+ ..+++|++|+|++|.++ .+|...|..+++|+.|++++| .+..+
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCccee
Confidence 455567899999999999999999998666666 78999999999999999 777777899999999999984 44433
Q ss_pred C-----CceeeeeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 046279 81 G-----GFYYLDSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA 154 (300)
Q Consensus 81 ~-----~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (300)
+ .+..+..+.+..+.+.. ..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 2 23345555554443321 12456889999999999999888999999999999999999999888889999999
Q ss_pred CCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 155 LESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 155 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999998888888999999999999999998775
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.3e-23 Score=187.47 Aligned_cols=190 Identities=21% Similarity=0.218 Sum_probs=160.1
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccc-cccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME-FGLQYI 80 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~-n~l~~l 80 (300)
|++..|.+|.++++|++|+|++|.+++..+..+ ..+++|++|+|++|.++ .+|...|..+++|+.|++++ +.++.+
T Consensus 111 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred cCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 566677899999999999999999998666666 78999999999999999 78777789999999999998 444443
Q ss_pred C-----CceeeeeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 046279 81 G-----GFYYLDSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA 154 (300)
Q Consensus 81 ~-----~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (300)
+ .+..+..+.+..+.+.. ..+..+++|++|++++|.+++..|..|.++++|+.|++++|.+++..+..|..+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 3 23344445544443321 12456889999999999999988999999999999999999999888899999999
Q ss_pred CCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 155 LESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 155 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999998877888999999999999999998775
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.8e-23 Score=199.16 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred HHHHhcccccEEEccCCcCCcCCC--------hhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCc
Q 046279 99 LLYKILIIFRTLDFSSNRFHGEVP--------EVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 99 ~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
..+..+++|++|++++|.+++..+ ..+.++++|++|++++|.++...+..|..+++|+.|++++|++++..+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 334445555555555555543211 124455555555555555553222345555556666666665554444
Q ss_pred hhhhcCCCCCeEEcccccccccCCCCC--CCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 171 EQLLAVTALASLNLSYNQLRGRIPRGN--QFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
..|..+++|+.|++++|++++..|... .+.. .....+.+||+.|+|..
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~------L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN------LTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT------CSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccc------cCEEEccCCCcccCCcc
Confidence 445555566666666665554333210 1112 22345667777777874
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.2e-23 Score=197.83 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=107.7
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCC-CCCCCCCCCcEEEcccCCCcccC--cHHHHhCccccccccccccccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKS-NSTFPFQALRIIDLSHNEFTGSL--PRTIFVSMEAMKIVDEMEFGLQ 78 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~l--p~~~~~~l~~L~~L~l~~n~l~ 78 (300)
+++..|.+++.+++|++|++++|.+.+.++.. + ..+++|++|++++|.+++.. +. .+..+++|+.|++++|.+.
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT--TTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCE
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhh--hccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCC
Confidence 44555667777777777777777776555443 3 55677777777777766222 22 2566667777777666654
Q ss_pred ccC-----CceeeeeEEEeecCch----hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC---CC
Q 046279 79 YIG-----GFYYLDSVTVAMKGQD----VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN---IP 146 (300)
Q Consensus 79 ~l~-----~~~~l~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~---~p 146 (300)
.+. ....+..+.+..+.+. ...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 331 1222333333333221 12244556666666666666655555566666666666666665531 22
Q ss_pred ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 147 ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 345555666666666666655555555566666666666666655444
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.9e-22 Score=169.10 Aligned_cols=181 Identities=20% Similarity=0.234 Sum_probs=149.3
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEee
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAM 93 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~ 93 (300)
.+.++++++++.++. +|..+ .++++.|+|++|.++ .++...+..+++|+.|++++|.+..++.
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~----~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 76 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI----PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSA----------- 76 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC----CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCT-----------
T ss_pred CCCeEEecCCCCccc-cCCCC----CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCH-----------
Confidence 457899999999986 66665 368999999999999 5555558999999999999999876543
Q ss_pred cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhh
Q 046279 94 KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL 173 (300)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 173 (300)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 77 -----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 77 -----GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp -----TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -----hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 234568999999999999998888889999999999999999997767778999999999999999997777789
Q ss_pred hcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCC
Q 046279 174 LAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTAT 221 (300)
Q Consensus 174 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~ 221 (300)
..+++|++|++++|++++..+. .+..........+.+|++.|+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHG-----AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSCCBCTT
T ss_pred CcCcCCCEEECCCCcCCccCHH-----HHhCCCCCCEEEeeCCceeCC
Confidence 9999999999999999955543 223333344556667777766
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=180.94 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=79.6
Q ss_pred HHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCC
Q 046279 101 YKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALA 180 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 180 (300)
+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 455677888888888887777777888888888888888887 45666667788888888888887 5666677788888
Q ss_pred eEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 181 SLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 181 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+|++++|+++. +|- ..+..+ ....+.+|++.|+|.
T Consensus 322 ~L~L~~N~i~~-~~~-~~~~~L------~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 322 NLYLDHNSIVT-LKL-STHHTL------KNLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSSCCCC-CCC-CTTCCC------SEEECCSSCEEHHHH
T ss_pred EEECCCCccce-eCc-hhhccC------CEEEcCCCCccchhH
Confidence 88888888873 331 122222 344556666666554
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.9e-23 Score=195.06 Aligned_cols=194 Identities=18% Similarity=0.223 Sum_probs=124.3
Q ss_pred chhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceee
Q 046279 7 PCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYL 86 (300)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l 86 (300)
|..++.+++|++|++++|.+++ +|..+ ..+++|+.|++++|.+.+..|...+..+++|+.|++++|.+..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 438 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI------- 438 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-------
T ss_pred hhhhccCCcccEeECCCCcccc-chhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-------
Confidence 4444455555555555554443 23333 4445555555555555433332234445555555555544432
Q ss_pred eeEEEeecCchhHHHHhcccccEEEccCCcCCc-CCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 87 DSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHG-EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 439 ---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 439 ---------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ---------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 223345667888999999998887 3677888889999999999998877788888889999999999998
Q ss_pred CccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
++..|..+..+++|++|++++|+++ .+|.. +..+.. ......+.+||+.|+|..
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~--~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPK--SLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCT--TCCEEECCSCCCCCSSTT
T ss_pred CCcCHHHccCCCcCCEEECCCCcCc-ccCHh--Hhhhcc--cCcEEEccCCCcccCCcc
Confidence 8888888888889999999999888 56653 111110 123345556666666654
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-23 Score=192.35 Aligned_cols=201 Identities=22% Similarity=0.175 Sum_probs=133.7
Q ss_pred cchhhhcCC----CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 6 FPCWLGSLS----ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 6 ip~~~~~l~----~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
+|..+..+. +|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..| +..+++|+.|++++|.+..++
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGG--TTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHH--hCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC
Confidence 455555444 67777777777666555555 566677777777776664333 566666666666666665443
Q ss_pred Ccee---------------------eeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhc-CCCCCCEEeC
Q 046279 82 GFYY---------------------LDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLG-NFKSLKVLNL 136 (300)
Q Consensus 82 ~~~~---------------------l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l 136 (300)
.... +..+.+..+ +..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 2211 223333333 33344566788888899999988887777775 6888999999
Q ss_pred CCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC-CCCCCCCCCcccCCcCCCC
Q 046279 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG-NQFNTFDNNSYIGNIHLCG 215 (300)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~~ 215 (300)
++|.+++. |. ...+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|.. ..+..+..+.+.+|+..|+
T Consensus 177 s~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 99988854 32 3458899999999999986544 48889999999999999995 4543 2344555555666665543
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=4e-22 Score=173.66 Aligned_cols=181 Identities=18% Similarity=0.220 Sum_probs=125.4
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce-
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY- 84 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~- 84 (300)
+|..+. ++|++|+|++|++++..+..+ ..+++|++|++++|.+++..|.. +..+++|+.|++++|.+..++...
T Consensus 46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~ 120 (330)
T 1xku_A 46 VPKDLP--PDTALLDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP 120 (330)
T ss_dssp CCCSCC--TTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred cCccCC--CCCeEEECCCCcCCEeChhhh--ccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc
Confidence 454332 577888888888877555556 67788888888888887333443 777888888888888777665432
Q ss_pred -eeeeEEEe---ecCchhHHHHhcccccEEEccCCcCCc--CCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEE
Q 046279 85 -YLDSVTVA---MKGQDVLLYKILIIFRTLDFSSNRFHG--EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESL 158 (300)
Q Consensus 85 -~l~~~~~~---~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (300)
.+..+.+. ........+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence 23333333 334445566777888888888887753 55667777888888888888877 4555443 678888
Q ss_pred eCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 159 DLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 159 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 888888877777777888888888888888875554
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=2.4e-23 Score=180.13 Aligned_cols=186 Identities=22% Similarity=0.236 Sum_probs=148.5
Q ss_pred cccchhhh-------cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCc-----ccccccc
Q 046279 4 DTFPCWLG-------SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSM-----EAMKIVD 71 (300)
Q Consensus 4 g~ip~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l-----~~L~~L~ 71 (300)
+.+|..+. ++++|++|+|++|++++..|..+....+++|++|++++|.++ .+|.. +..+ ++|+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~-~~~l~~~~~~~L~~L~ 155 (312)
T 1wwl_A 78 ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAW-LAELQQWLKPGLKVLS 155 (312)
T ss_dssp EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSH-HHHHHTTCCTTCCEEE
T ss_pred CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHH-HHHHHHhhcCCCcEEE
Confidence 45677666 799999999999999988888653467899999999999999 44744 6666 8999999
Q ss_pred cccccccccC-----CceeeeeEEEeecCchhH-----H--HHhcccccEEEccCCcCCcC--C-ChhhcCCCCCCEEeC
Q 046279 72 EMEFGLQYIG-----GFYYLDSVTVAMKGQDVL-----L--YKILIIFRTLDFSSNRFHGE--V-PEVLGNFKSLKVLNL 136 (300)
Q Consensus 72 l~~n~l~~l~-----~~~~l~~~~~~~~~~~~~-----~--~~~l~~L~~L~Ls~n~l~~~--~-~~~~~~l~~L~~L~l 136 (300)
+++|.+..++ ....+..+.+..+..... . +..+++|++|++++|.+++. + ...+..+++|++|++
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 9999987665 344567777777664322 2 26789999999999999832 2 234568899999999
Q ss_pred CCCCCCCCCC-ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 137 SHNSLTGNIP-ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 137 s~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |.
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh
Confidence 9999997664 45667899999999999999 6777665 8999999999999955 65
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.2e-22 Score=175.55 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=103.7
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG 82 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~ 82 (300)
++..|.+|+++++|++|++++|.+++..|..+ ..+++|++|++++|.++ .+|..++ ++|+.|++++|.+..++.
T Consensus 67 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCS
T ss_pred CccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCH
Confidence 34445567777777777777777766555555 56667777777777666 5554422 556666666665544332
Q ss_pred -----ceeeeeEEEeecCch-----hHHHHhc--------------------ccccEEEccCCcCCcCCChhhcCCCCCC
Q 046279 83 -----FYYLDSVTVAMKGQD-----VLLYKIL--------------------IIFRTLDFSSNRFHGEVPEVLGNFKSLK 132 (300)
Q Consensus 83 -----~~~l~~~~~~~~~~~-----~~~~~~l--------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 132 (300)
...+..+.+..+.+. +..+..+ ++|++|++++|.+++..+..+..+++|+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 122333333333221 1112222 4556666666666655555566666666
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 133 VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 133 ~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 6666666666555555666666666666666666 45555666666666666666666
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.1e-22 Score=184.60 Aligned_cols=111 Identities=24% Similarity=0.237 Sum_probs=96.5
Q ss_pred eeeEEEeecC---chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCC
Q 046279 86 LDSVTVAMKG---QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 86 l~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 162 (300)
+..+.+..+. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 4444444333 3345677789999999999999988899999999999999999999988899999999999999999
Q ss_pred CccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 163 NKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 163 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 381 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999877777899999999999999999999964
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=3.5e-23 Score=195.63 Aligned_cols=189 Identities=18% Similarity=0.277 Sum_probs=128.3
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCC-----------------CCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGP-----------------LCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSM 64 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l 64 (300)
|+| ||++|+++++|++|+|++|.+++. +|..+.+.++++|++|++++|.+.+.+|.. +.++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l 272 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKAL 272 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTC
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcC
Confidence 456 899999999999999999999885 788872128999999999999998888866 7889
Q ss_pred cccccccccccc-ccc--cCC----c------eeeeeEEEeecCch--hH--HHHhcccccEEEccCCcCCcCCChhhcC
Q 046279 65 EAMKIVDEMEFG-LQY--IGG----F------YYLDSVTVAMKGQD--VL--LYKILIIFRTLDFSSNRFHGEVPEVLGN 127 (300)
Q Consensus 65 ~~L~~L~l~~n~-l~~--l~~----~------~~l~~~~~~~~~~~--~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 127 (300)
++|+.|++++|+ +.. ++. + ..+..+.+..+.+. +. .+..+++|++|++++|.+++.+| .++.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 999999999987 653 321 1 23333333333222 11 44556666667777666666666 5666
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCC-CCEEeCCCCccCccCchhhhcCC--CCCeEEcccccccccCCC
Q 046279 128 FKSLKVLNLSHNSLTGNIPASLGNMTA-LESLDLSFNKLHGIIPEQLLAVT--ALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 128 l~~L~~L~ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|.
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 666666666666666 55666666666 666666666666 5555554433 566666666666665554
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=164.36 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=139.7
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
-+.+++++|.++. +|..+ ...+++|+|++|.+++..|...|..+++|+.|++++|.+..++.
T Consensus 13 ~~~l~~s~n~l~~-iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~------------- 74 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE------------- 74 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-------------
T ss_pred CCEeEeCCCCccc-CccCC----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-------------
Confidence 3689999999986 67665 45679999999999944465668899999999999999876643
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..
T Consensus 75 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 75 ---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred ---HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 23456899999999999999888888999999999999999999888999999999999999999999888999999
Q ss_pred CCCCCeEEcccccccccCCC
Q 046279 176 VTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|+++|.++-
T Consensus 152 l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CTTCCEEECCSCCEECSGGG
T ss_pred CCCCCEEEecCcCCcCCCch
Confidence 99999999999999988763
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=4.3e-22 Score=170.47 Aligned_cols=174 Identities=22% Similarity=0.214 Sum_probs=124.2
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC----ceeeeeE
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG----FYYLDSV 89 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~----~~~l~~~ 89 (300)
+++++|+|++|.+++..+..+ ..+++|++|+|++|.++ .++.. ..+++|+.|++++|.+..++. ...+..+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG--TTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCEEEcCCCcCCccCHHHh--hcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 456666666666655444444 55566666666666665 44432 455566666666665544432 1122233
Q ss_pred EEee---cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccC
Q 046279 90 TVAM---KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 90 ~~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 166 (300)
.+.. ..+.+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|++|++++|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 3322 2333455677999999999999999877788899999999999999999666667788999999999999999
Q ss_pred ccCchhhhcCCCCCeEEcccccccccC
Q 046279 167 GIIPEQLLAVTALASLNLSYNQLRGRI 193 (300)
Q Consensus 167 ~~~~~~l~~l~~L~~L~l~~N~l~~~~ 193 (300)
.+|..+...++|+.+++++|++.+.+
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred -ccChhhcccccCCeEEeCCCCccCcC
Confidence 67888888899999999999998765
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=7.5e-23 Score=176.38 Aligned_cols=211 Identities=20% Similarity=0.332 Sum_probs=168.4
Q ss_pred ccch-hhhcCCCCCEEEccCCcccCC--CCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 5 TFPC-WLGSLSELKILVLRSNRFYGP--LCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 5 ~ip~-~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
.+|. .|+++++|++|+|++|.++.. .+..+ ..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+..++
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~ 117 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMS 117 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH--HSCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESST
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCccccc--ccccccCEEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccc
Confidence 3554 578999999999999998743 23444 56899999999999998 78766 788999999999999886654
Q ss_pred C------ceeeeeEEEeecC---chhHHHHhcccccEEEccCCcCCc-CCChhhcCCCCCCEEeCCCCCCCCCCCccccC
Q 046279 82 G------FYYLDSVTVAMKG---QDVLLYKILIIFRTLDFSSNRFHG-EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGN 151 (300)
Q Consensus 82 ~------~~~l~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 151 (300)
. ...+..+.+..+. ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..
T Consensus 118 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 3 2344555554443 344556778999999999999986 57888999999999999999999877889999
Q ss_pred CCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCC-cccCCcCCCCCCCCCCCCC
Q 046279 152 MTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNN-SYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~-~~~~n~~l~~~~~~~~C~~ 224 (300)
+++|++|++++|.+++..+..+..+++|++|++++|++++..|.. +... .......+.+|++.|+|..
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-----LQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-----CCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-----HHhhhccCCEEEccCCCeecccCh
Confidence 999999999999999887878999999999999999999877753 2222 1234456777888888864
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.4e-21 Score=184.71 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=143.3
Q ss_pred ccchhhhcCCC-CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHh-------Cccccccccccccc
Q 046279 5 TFPCWLGSLSE-LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFV-------SMEAMKIVDEMEFG 76 (300)
Q Consensus 5 ~ip~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~-------~l~~L~~L~l~~n~ 76 (300)
.+|.+++.+++ |++|++++|.++ .+|..+....+++|++|++++|.+++.+|.. +. .+.+|+.|++++|.
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC
T ss_pred cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc
Confidence 56777777777 777777777777 4666552223346777777777776555544 44 55567777777777
Q ss_pred ccccCC-----ceeeeeEEEeecCch---hHHHH-------hcccccEEEccCCcCCcCCChhhc--CCCCCCEEeCCCC
Q 046279 77 LQYIGG-----FYYLDSVTVAMKGQD---VLLYK-------ILIIFRTLDFSSNRFHGEVPEVLG--NFKSLKVLNLSHN 139 (300)
Q Consensus 77 l~~l~~-----~~~l~~~~~~~~~~~---~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~ls~n 139 (300)
+..++. ...+..+.+..+.+. ...+. .+++|+.|++++|.++ .+|..+. .+++|++|++++|
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSS
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCC
Confidence 665543 223344444433332 22222 2238999999999999 7888886 8999999999999
Q ss_pred CCCCCCCccccCCCCCCEEeC------CCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCC
Q 046279 140 SLTGNIPASLGNMTALESLDL------SFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHL 213 (300)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l 213 (300)
.+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.... ..+..+...+|+..
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence 9996 8989999999999999 56788889999999999999999999999 58887532 44444444444433
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.9e-22 Score=173.33 Aligned_cols=181 Identities=21% Similarity=0.233 Sum_probs=119.9
Q ss_pred Cccccchhh--hcCCCCCEEEccCCcccCCCCCCCCCCCC-----CCCcEEEcccCCCcccCcHHHHhCccccccccccc
Q 046279 2 ISDTFPCWL--GSLSELKILVLRSNRFYGPLCKSNSTFPF-----QALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME 74 (300)
Q Consensus 2 l~g~ip~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~ 74 (300)
|+|.+|..+ +.+++|++|+|++|++++. |..+ ..+ ++|++|++++|.+. .++...+..+++|+.|++++
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCS
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCC
Confidence 566777765 7777788888887777765 5544 444 77777888877777 44434467777777777777
Q ss_pred ccccc-------c--CCceeeeeEEEeecCch------hHHHHhcccccEEEccCCcCCcCCC-hhhcCCCCCCEEeCCC
Q 046279 75 FGLQY-------I--GGFYYLDSVTVAMKGQD------VLLYKILIIFRTLDFSSNRFHGEVP-EVLGNFKSLKVLNLSH 138 (300)
Q Consensus 75 n~l~~-------l--~~~~~l~~~~~~~~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~ 138 (300)
|.+.. + .....+..+.+..+.+. ...+..+++|++|++++|.+++..| ..+..+++|++|++++
T Consensus 183 N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 77421 1 33334455555544443 1233456777778887777776554 3455667777788887
Q ss_pred CCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccc
Q 046279 139 NSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 139 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7777 6666655 6777778887777754 54 6777777777887777764
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.4e-22 Score=168.54 Aligned_cols=189 Identities=16% Similarity=0.141 Sum_probs=134.4
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCC-CcccCcHHHHhCccccccccccc-ccccccCC
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNE-FTGSLPRTIFVSMEAMKIVDEME-FGLQYIGG 82 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~lp~~~~~~l~~L~~L~l~~-n~l~~l~~ 82 (300)
++|. +. ++|++|++++|++++..+..+ ..+++|++|++++|. ++ .++...|..+++|+.|++++ |.+..++.
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAF--SNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTT--TTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHc--cCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4555 32 378888888888887655566 678888888888886 77 67665578888888888887 88766553
Q ss_pred c-----eeeeeEEEeec---CchhHHHHhccccc---EEEccCC-cCCcCCChhhcCCCCCC-EEeCCCCCCCCCCCccc
Q 046279 83 F-----YYLDSVTVAMK---GQDVLLYKILIIFR---TLDFSSN-RFHGEVPEVLGNFKSLK-VLNLSHNSLTGNIPASL 149 (300)
Q Consensus 83 ~-----~~l~~~~~~~~---~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~p~~~ 149 (300)
. ..+..+.+..+ .+.. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 2 22334444333 2222 45567777 8999998 88877677788888999 9999999888 455443
Q ss_pred cCCCCCCEEeCCCCc-cCccCchhhhcC-CCCCeEEcccccccccCCCCCCCCCCCC
Q 046279 150 GNMTALESLDLSFNK-LHGIIPEQLLAV-TALASLNLSYNQLRGRIPRGNQFNTFDN 204 (300)
Q Consensus 150 ~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~~~~~~~~~~ 204 (300)
...++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+..+..
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~ 230 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKE 230 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSE
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCce
Confidence 333788999999995 886667778888 88999999999888 45543 3334433
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.5e-22 Score=174.12 Aligned_cols=175 Identities=22% Similarity=0.143 Sum_probs=106.0
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee------
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY------ 85 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~------ 85 (300)
.+++|++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ +..+++|+.|++++|.+..++....
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHH--TTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHh--hCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 34455555555555555433334 445555555555555552222 4555555555555555543332222
Q ss_pred ---------------eeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhc-CCCCCCEEeCCCCCCCCCCC
Q 046279 86 ---------------LDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLG-NFKSLKVLNLSHNSLTGNIP 146 (300)
Q Consensus 86 ---------------l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p 146 (300)
+..+.+..+ ...+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~ 185 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c
Confidence 223333322 23334556677888888888888876666553 678888888888888743 3
Q ss_pred ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 147 ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
. ...+++|++|++++|++++. |..+..+++|++|++++|.++ .+|.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 186 G-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp C-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred c-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhh
Confidence 2 33578888888888888854 444788888888888888888 4554
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.7e-22 Score=177.18 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=34.6
Q ss_pred chhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc
Q 046279 7 PCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ 78 (300)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 78 (300)
|.+|+.+++|++|+|++|.+++..|..+ ..+++|++|++++|.++ .+|..+|..+++|+.|++++|.+.
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC
Confidence 3345555555555555555554444433 44555555555555555 444444445555555555555443
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.7e-22 Score=187.60 Aligned_cols=214 Identities=21% Similarity=0.221 Sum_probs=170.1
Q ss_pred Cccccch-hhhcCCCCCEEEccCCcccCCC--CCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccc
Q 046279 2 ISDTFPC-WLGSLSELKILVLRSNRFYGPL--CKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQ 78 (300)
Q Consensus 2 l~g~ip~-~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~ 78 (300)
+++.+|. +++.+++|++|++++|.+++.. +..+ ..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEE
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCC
Confidence 4556665 5899999999999999998765 5555 789999999999999984445 44889999999999999885
Q ss_pred cc------CCceeeeeEEEeecC---chhHHHHhcccccEEEccCCcCCcC---CChhhcCCCCCCEEeCCCCCCCCCCC
Q 046279 79 YI------GGFYYLDSVTVAMKG---QDVLLYKILIIFRTLDFSSNRFHGE---VPEVLGNFKSLKVLNLSHNSLTGNIP 146 (300)
Q Consensus 79 ~l------~~~~~l~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p 146 (300)
.. .....+..+.+..+. ..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 43 223345555554443 3455677899999999999999863 33678899999999999999998888
Q ss_pred ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 147 ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
..+..+++|++|++++|++++..|..+..++.| +|++++|.+++..|.. +..........+.+||+.|+|..
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-----LPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG-----HHHHHTSSEEECTTCCEECSGGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh-----cccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999999999 9999999999666642 22222334556677777777863
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.8e-21 Score=185.26 Aligned_cols=191 Identities=20% Similarity=0.194 Sum_probs=126.4
Q ss_pred CccccchhhhcCCCCCEEEccCCc----------------------------ccCCCCCCCCCCCCCCCcEEEcccCCCc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNR----------------------------FYGPLCKSNSTFPFQALRIIDLSHNEFT 53 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~----------------------------i~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 53 (300)
|++..|.+|+++++|++|++++|. +++..|..+ ..+++|++|++++|.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCc
Confidence 455566677777777777776665 333334444 55666777777777766
Q ss_pred ccCcHHHHhCcccccccccccccccccCC-----ceeeeeEEEeecC-----chhHHHHhcccccEEEccCCcCCcCCCh
Q 046279 54 GSLPRTIFVSMEAMKIVDEMEFGLQYIGG-----FYYLDSVTVAMKG-----QDVLLYKILIIFRTLDFSSNRFHGEVPE 123 (300)
Q Consensus 54 ~~lp~~~~~~l~~L~~L~l~~n~l~~l~~-----~~~l~~~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 123 (300)
+.+|...+..+++|+.|++++|.+..+.. ...+..+.+..+. ..+..+..+++|+.|++++|.+++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 55654446666777777777766543322 1223333332222 2334566678888888888888877777
Q ss_pred hhcCCCCCCEEeCCCCCCCCCCC--------ccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 124 VLGNFKSLKVLNLSHNSLTGNIP--------ASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 124 ~~~~l~~L~~L~ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
.|.++++|++|++++|.+++..+ ..+..+++|+.|++++|+++...+..|..+++|++|++++|.++ .+|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 577 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPA 577 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCH
Confidence 78888888888888888874321 23677888888888888888555556888888888888888888 4443
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=4.9e-22 Score=168.77 Aligned_cols=191 Identities=20% Similarity=0.185 Sum_probs=156.8
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++..+.+|+++++|++|++++|.+++..+..+ ..+++|++|++++|.++ .++...+..+++|+.|++++|.+..++
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp CCEECTTTTTTCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred ccccCHhHhccccCCcEEECCCCcCCccCHHHc--cCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccC
Confidence 445556689999999999999999998666667 78999999999999999 555555899999999999999986654
Q ss_pred C-----ceeeeeEEEeecCch----hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCC----EEeCCCCCCCCCCCcc
Q 046279 82 G-----FYYLDSVTVAMKGQD----VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLK----VLNLSHNSLTGNIPAS 148 (300)
Q Consensus 82 ~-----~~~l~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~ls~n~l~~~~p~~ 148 (300)
. ...+..+.+..+.+. +..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..+..
T Consensus 117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc
Confidence 3 334556666555442 45678899999999999999988777777777776 8999999999555544
Q ss_pred ccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 149 LGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 149 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
+ ...+|+.|++++|.+++..+..+..+++|++|++++|+++|.+|..
T Consensus 197 ~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 197 F-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp S-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred c-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 4 4568999999999999777777899999999999999999998854
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=4.4e-22 Score=192.58 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=134.7
Q ss_pred CccccchhhhcCCCCCEEEccCCcccC-----------------CCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYG-----------------PLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSM 64 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~-----------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l 64 (300)
|+| ||.+|+++++|++|+|++|.+++ .+|..+.+.++++|++|+|++|.+.+.+|.. +..+
T Consensus 437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L 514 (876)
T 4ecn_A 437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDL 514 (876)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGC
T ss_pred ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCC
Confidence 345 99999999999999999999998 3788872238999999999999999899966 8999
Q ss_pred cccccccccccc-ccc--cCC----ce-------eeeeEEEeecCch--hH--HHHhcccccEEEccCCcCCcCCChhhc
Q 046279 65 EAMKIVDEMEFG-LQY--IGG----FY-------YLDSVTVAMKGQD--VL--LYKILIIFRTLDFSSNRFHGEVPEVLG 126 (300)
Q Consensus 65 ~~L~~L~l~~n~-l~~--l~~----~~-------~l~~~~~~~~~~~--~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 126 (300)
++|+.|++++|+ +.. ++. +. .+..+.+..+.+. +. .+..+++|+.|++++|.++ .+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 999999999998 653 321 11 3333433333322 11 4556677777777777777 566 667
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCC-CCEEeCCCCccCccCchhhhcCCC--CCeEEcccccccccCC
Q 046279 127 NFKSLKVLNLSHNSLTGNIPASLGNMTA-LESLDLSFNKLHGIIPEQLLAVTA--LASLNLSYNQLRGRIP 194 (300)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~~p 194 (300)
.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+++.+|
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 7777777777777777 66666777776 777777777776 56655554433 7777777777766555
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.4e-22 Score=172.55 Aligned_cols=186 Identities=19% Similarity=0.203 Sum_probs=145.7
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
.+|..+ .++|++|++++|.+++..+..+ ..+++|++|++++|.+++..|. .+..+++|+.|++++|.+..++...
T Consensus 47 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~ 121 (332)
T 2ft3_A 47 AVPKEI--SPDTTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLVEIPPNL 121 (332)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCCSCCSSC
T ss_pred ccCCCC--CCCCeEEECCCCcCCccCHhHh--hCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCCccCccc
Confidence 466655 3689999999999998777777 8899999999999999944454 4899999999999999998776533
Q ss_pred --eeeeEEEee---cCchhHHHHhcccccEEEccCCcCCc--CCChhhcCC--------------------CCCCEEeCC
Q 046279 85 --YLDSVTVAM---KGQDVLLYKILIIFRTLDFSSNRFHG--EVPEVLGNF--------------------KSLKVLNLS 137 (300)
Q Consensus 85 --~l~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l--------------------~~L~~L~ls 137 (300)
.+..+.+.. .......+..+++|+.|++++|.++. ..+..+..+ ++|++|+++
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECC
Confidence 344444443 34455567889999999999999963 445555443 467777777
Q ss_pred CCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 138 HNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 138 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 77777666677888889999999999998877778888999999999999988 66653
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=181.39 Aligned_cols=181 Identities=22% Similarity=0.294 Sum_probs=133.2
Q ss_pred CCCCCcEEEcccCCCcccC--cHHHHhCcccccccccccccccccCC----ceeeeeEEEeec---Cchh-HHHHhcccc
Q 046279 38 PFQALRIIDLSHNEFTGSL--PRTIFVSMEAMKIVDEMEFGLQYIGG----FYYLDSVTVAMK---GQDV-LLYKILIIF 107 (300)
Q Consensus 38 ~l~~L~~L~Ls~n~l~~~l--p~~~~~~l~~L~~L~l~~n~l~~l~~----~~~l~~~~~~~~---~~~~-~~~~~l~~L 107 (300)
.+++|++|++++|.+++.. |.. +..+++|+.|++++|.+..++. ...+..+.+..+ ...+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHH-HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCcccccccc-ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4566777777777766221 333 6777788888888877654432 222333333332 2222 356778999
Q ss_pred cEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCC-CCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccc
Q 046279 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLT-GNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSY 186 (300)
Q Consensus 108 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 186 (300)
++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999999888889999999999999999987 56888899999999999999999988899999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 187 NQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 187 N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
|.+++..|.. +..........+.+|++.|+|..
T Consensus 504 n~l~~~~~~~-----~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 504 NQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCSCCCTTT-----TTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcCCCCCHHH-----hhcccCCcEEEecCCcccCCCcc
Confidence 9999665542 33333345566777788777764
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6e-22 Score=171.16 Aligned_cols=193 Identities=22% Similarity=0.205 Sum_probs=131.2
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCc---HHHHhCcccccccccccccccccC-----Cc
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLP---RTIFVSMEAMKIVDEMEFGLQYIG-----GF 83 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp---~~~~~~l~~L~~L~l~~n~l~~l~-----~~ 83 (300)
.+++|++|++++|.+++..|..+....+++|++|++++|.+++..+ ...+..+++|+.|++++|.+..++ ..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466888888888887766665422457778888888888775433 222446778888888888775543 23
Q ss_pred eeeeeEEEeecCchhH-------HHHhcccccEEEccCCcCCcCCCh----hhcCCCCCCEEeCCCCCCCCCCCccccCC
Q 046279 84 YYLDSVTVAMKGQDVL-------LYKILIIFRTLDFSSNRFHGEVPE----VLGNFKSLKVLNLSHNSLTGNIPASLGNM 152 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 152 (300)
..+..++++.+.+... .+..+++|++|++++|.++. ++. .+..+++|++|++++|.+++..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 3456666666653221 12457889999999999873 333 35678899999999999987777777666
Q ss_pred ---CCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccC
Q 046279 153 ---TALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIG 209 (300)
Q Consensus 153 ---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 209 (300)
++|++|++++|+++ .+|..+. ++|++|++++|++++ +|....+..+..+.+.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDG 303 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSS
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcC
Confidence 68999999999998 5666553 789999999999985 34322333444333333
No 55
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.5e-21 Score=159.05 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=135.5
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
-+.++++++.++. +|..+ .++|+.|++++|.++ .++...|..+++|+.|++++|.+..+.
T Consensus 13 ~~~v~c~~~~l~~-iP~~l----~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~-------------- 72 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-IPTNL----PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-------------- 72 (220)
T ss_dssp TTEEECTTSCCSS-CCSSC----CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEEC--------------
T ss_pred CCEEEcCCCCcCc-CCCcc----CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcC--------------
Confidence 3688999999876 56655 368999999999998 676666889999999999999887552
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
+..+..+++|++|+|++|.++...+..|..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..
T Consensus 73 --~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 73 --PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp --TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 234566899999999999999766677889999999999999999888899999999999999999999888888999
Q ss_pred CCCCCeEEcccccccccCC
Q 046279 176 VTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p 194 (300)
+++|++|++++|++.+.++
T Consensus 151 l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CTTCCEEECCSSCEECSGG
T ss_pred CCCCCEEEeCCCCcCCCCc
Confidence 9999999999999987654
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-21 Score=159.02 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=102.2
Q ss_pred CCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEe
Q 046279 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVA 92 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~ 92 (300)
.++|++|++++|.+++..+..+ ..+++|++|++++|.++ .+|...|..+++|+.|++++|.+..++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVF--DELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN---------- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT----------
T ss_pred CCCCcEEEcCCCccCcCChhhh--cccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCH----------
Confidence 3467777777777766444444 56677777777777776 5655556667777777777766654432
Q ss_pred ecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchh
Q 046279 93 MKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQ 172 (300)
Q Consensus 93 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 172 (300)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 94 ------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 94 ------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred ------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 123446667777777777775555556667777777777777775555556667777777777776653
Q ss_pred hhcCCCCCeEEcccccccccCCC
Q 046279 173 LLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 173 l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
.+++|+.|+++.|.++|.+|.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBC
T ss_pred --CCCCHHHHHHHHHhCCceeec
Confidence 244566777777777777765
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=6.1e-22 Score=191.63 Aligned_cols=189 Identities=22% Similarity=0.320 Sum_probs=157.2
Q ss_pred CCccccchhhhcCCCCCEEEc-cCCcccCC--------------------------------------------------
Q 046279 1 MISDTFPCWLGSLSELKILVL-RSNRFYGP-------------------------------------------------- 29 (300)
Q Consensus 1 ~l~g~ip~~~~~l~~L~~L~L-s~n~i~~~-------------------------------------------------- 29 (300)
.++|.+|++|++|++|++|+| ++|.+.|.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 368999999999999999999 77765443
Q ss_pred --------------------------CCCCCCCCCCCCCcEEEcccCCCcc-----------------cCcHHH-HhCcc
Q 046279 30 --------------------------LCKSNSTFPFQALRIIDLSHNEFTG-----------------SLPRTI-FVSME 65 (300)
Q Consensus 30 --------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~lp~~~-~~~l~ 65 (300)
+|..+ .++++|++|+|++|.+++ .+|..+ |..++
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l--~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAI--QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGG--GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccchhhceeccccCcccchhHHH--hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 55555 788999999999999996 388774 34999
Q ss_pred ccccccccccccc-ccC----CceeeeeEEEeecC-ch----hHHHHhcc-------cccEEEccCCcCCcCCCh--hhc
Q 046279 66 AMKIVDEMEFGLQ-YIG----GFYYLDSVTVAMKG-QD----VLLYKILI-------IFRTLDFSSNRFHGEVPE--VLG 126 (300)
Q Consensus 66 ~L~~L~l~~n~l~-~l~----~~~~l~~~~~~~~~-~~----~~~~~~l~-------~L~~L~Ls~n~l~~~~~~--~~~ 126 (300)
+|+.|++++|.+. .++ .+..|..+.+..+. +. +..+..++ +|+.|++++|.++ .+|. .++
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 9999999999853 333 34456666666665 33 33344444 9999999999999 7888 899
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCC-CCeEEcccccccccCCCC
Q 046279 127 NFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTA-LASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~l~~N~l~~~~p~~ 196 (300)
.+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 9999999999999999 788 8999999999999999999 88888999999 999999999999 77754
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=5.7e-23 Score=178.13 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=96.5
Q ss_pred CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC---CceeeeeEEE
Q 046279 15 ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG---GFYYLDSVTV 91 (300)
Q Consensus 15 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~---~~~~l~~~~~ 91 (300)
.++.++++.+.+.......+ ..+++|++|++++|.++ .++...+..+++|+.|++++|.+..+. ....+..+.+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~--~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHH--TTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHh--ccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEEC
Confidence 45666677776654333333 44679999999999999 566566899999999999999986432 2223333433
Q ss_pred eecCchhH-------------------HHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccc-cC
Q 046279 92 AMKGQDVL-------------------LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASL-GN 151 (300)
Q Consensus 92 ~~~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~ 151 (300)
..+.+... ....+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..
T Consensus 88 s~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 88 NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp CSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred cCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 33322110 11123344555555555554444445555555555555555554434433 24
Q ss_pred CCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccc
Q 046279 152 MTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
+++|++|++++|.+++. +. ...+++|++|++++|.+++
T Consensus 168 l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred cCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 55555555555555533 21 1235555555555555553
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-22 Score=179.02 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=143.1
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcH-HHHhCccccccccccccc-ccc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPR-TIFVSMEAMKIVDEMEFG-LQY 79 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~-~~~~~l~~L~~L~l~~n~-l~~ 79 (300)
|++..|.+|+++++|++|++++|++++..+..+ ..+++|++|++++|.++ .+|. ..+..+++|+.|++++|+ +..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc
Confidence 455667788899999999999999887443335 67888999999999888 7776 457888899999998884 543
Q ss_pred c-----CCceeeeeEEEeecCc---hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC-------
Q 046279 80 I-----GGFYYLDSVTVAMKGQ---DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN------- 144 (300)
Q Consensus 80 l-----~~~~~l~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~------- 144 (300)
+ .....+..+.+..+.+ .+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++.
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 3 2344556666655543 344566678888888888888643333445578888888888887753
Q ss_pred ------------------------CCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 145 ------------------------IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 145 ------------------------~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+|+.+..+++|+.|++++|+++...+..+..+++|++|++++|+++|.+|.
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 344567889999999999999944334468999999999999999988874
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.1e-21 Score=180.28 Aligned_cols=182 Identities=21% Similarity=0.265 Sum_probs=126.9
Q ss_pred ccch-hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 5 TFPC-WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 5 ~ip~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
.+|. .|+.+++|++|+|++|.+++..+..+ ..+++|++|+|++|.++ .+|...|..+++|+.|++++|.+..++..
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHh--cCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 3444 57889999999999999998777777 78999999999999998 56656688999999999999998766532
Q ss_pred -----eeeeeEEEeec---CchhHHHHhcccccEEEccCCcCCcCCChhhcCC---------------------------
Q 046279 84 -----YYLDSVTVAMK---GQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNF--------------------------- 128 (300)
Q Consensus 84 -----~~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------------------- 128 (300)
..+..+.+..+ ...+..+..+++|++|++++|.+++.....+..+
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 23444444443 3445566778889999999988875432222111
Q ss_pred ----------CCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccc
Q 046279 129 ----------KSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 129 ----------~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 123444444444442 2445666777777777777776667777777777777777777764
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=9.2e-21 Score=156.62 Aligned_cols=156 Identities=22% Similarity=0.197 Sum_probs=133.7
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
-+.++.++++++. +|..+ .++|++|+|++|.++ .++...+..+++|+.|++++|++..++.
T Consensus 21 ~~~v~c~~~~l~~-ip~~~----~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~------------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI----PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPV------------- 81 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC----CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT-------------
T ss_pred CCEeEccCCCcCc-cCCCC----CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcCh-------------
Confidence 5788999998875 66655 478999999999999 4544458889999999999998876643
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
..+..+++|+.|+|++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 82 ---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 82 ---GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred ---hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 23456889999999999999777778899999999999999999 78888999999999999999999777778999
Q ss_pred CCCCCeEEcccccccccCC
Q 046279 176 VTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p 194 (300)
+++|+.|++++|++.|.++
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999998876
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.3e-21 Score=172.52 Aligned_cols=87 Identities=29% Similarity=0.335 Sum_probs=39.4
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhh---hcCCCCC
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL---LAVTALA 180 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~ 180 (300)
+++|++|+|++|.++...+..|..+++|++|++++|.|++..|..|..+++|++|+|++|.|++..+..+ ..+++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 4444444554444444444444444444555555544444444444444444555555444443222222 2344444
Q ss_pred eEEccccccc
Q 046279 181 SLNLSYNQLR 190 (300)
Q Consensus 181 ~L~l~~N~l~ 190 (300)
.|+|++|.|+
T Consensus 167 ~L~L~~N~l~ 176 (361)
T 2xot_A 167 LLDLSSNKLK 176 (361)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 4555444444
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.6e-20 Score=151.53 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=136.5
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
-+.++++++.++. +|..+ .++|++|++++|.++ .++...+..+++|+.|++++|++..++.
T Consensus 9 ~~~v~c~~~~l~~-~p~~~----~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------- 69 (208)
T 2o6s_A 9 GTTVECYSQGRTS-VPTGI----PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPN------------- 69 (208)
T ss_dssp TTEEECCSSCCSS-CCSCC----CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCT-------------
T ss_pred CCEEEecCCCccC-CCCCC----CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccCh-------------
Confidence 3678999998876 55544 568999999999999 7777778999999999999998876543
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 70 ---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 70 ---GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ---hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 23456899999999999999777777899999999999999999777777899999999999999999777777899
Q ss_pred CCCCCeEEcccccccccCCC
Q 046279 176 VTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|++.+.+|.
T Consensus 147 l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CTTCCEEECCSCCBCCCTTT
T ss_pred CCCccEEEecCCCeecCCCC
Confidence 99999999999999988874
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.2e-20 Score=177.34 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=157.9
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCC-CCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLC-KSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
+|.+|+.+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+...
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---- 463 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN---- 463 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGG----
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCc----
Confidence 67889999999999999999998766 455 78999999999999999666654 89999999999999988641
Q ss_pred eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCc
Q 046279 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK 164 (300)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 164 (300)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 464 -----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 464 -----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -----------chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 011223558999999999999999889999999999999999999998889999999999999999999
Q ss_pred cCccCchhhhcCC-CCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 046279 165 LHGIIPEQLLAVT-ALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCSNDGLPKAPPSA 234 (300)
Q Consensus 165 l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~~~~~~~~~~~~ 234 (300)
++ .+|..+..++ +|++|++++|++.|.++.......+.. +...........|..|....+.+..
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-----~~~~~~~~~~~~C~~p~~~~~~~l~ 597 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE-----QKQFLVNVEQMTCATPVEMNTSLVL 597 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT-----SSSSBSSGGGCCCC-----------
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc-----CcccccCCccceeCCChHhCCCEee
Confidence 99 6777788887 599999999999988875322222211 1122222344678877665554443
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=4.8e-21 Score=168.96 Aligned_cols=169 Identities=22% Similarity=0.217 Sum_probs=140.3
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCC-CCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTF-PFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
.+|..+. +.++.|+|++|+|++..+..+ . .+++|++|+|++|.|+ .++...|..+++|+.|++++|.+..++.
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~--~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~- 105 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDE- 105 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSS--SSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhh--hhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCH-
Confidence 3665443 468999999999998666555 5 7899999999999999 6665668999999999999999876543
Q ss_pred eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccc---cCCCCCCEEeC
Q 046279 84 YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASL---GNMTALESLDL 160 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---~~l~~L~~L~L 160 (300)
..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..+ ..+++|+.|+|
T Consensus 106 ---------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 106 ---------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp ---------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred ---------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 334568999999999999998889999999999999999999995444444 57999999999
Q ss_pred CCCccCccCchhhhcCCC--CCeEEcccccccccCC
Q 046279 161 SFNKLHGIIPEQLLAVTA--LASLNLSYNQLRGRIP 194 (300)
Q Consensus 161 s~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~~p 194 (300)
++|+|++..+..+..++. ++.|++++|++.+.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 999999777788888887 4899999999987654
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.6e-20 Score=160.78 Aligned_cols=151 Identities=20% Similarity=0.273 Sum_probs=76.7
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDS 88 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~ 88 (300)
.+..+++|++|++++|.+++..+ + ..+++|++|++++|.++ .++. +..+++|+.|++++|.+..++.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~--~--~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~------ 124 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTP------ 124 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEECTTSCCCCCGG------
T ss_pred hhhccCCCCEEEccCCcCCCChh--H--ccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEEECCCCCCCCchh------
Confidence 35556666666666666655322 3 55566666666666665 4442 5556666666666665544332
Q ss_pred EEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 89 VTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+++.
T Consensus 125 ------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 125 ------------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp ------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred ------------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 2334455555555555543221 44445555555555555422 22 44455555555555555432
Q ss_pred CchhhhcCCCCCeEEccccccc
Q 046279 169 IPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.+ +..+++|++|++++|+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCC
T ss_pred hh--hcCCCCCCEEEccCCccC
Confidence 21 444555555555555554
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=7.1e-21 Score=177.42 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=62.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc--CchhhhcCCCCCeEEcccccccccCCCC
Q 046279 126 GNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI--IPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++. +|..+..+++|++|++++|.+++.+|..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 5678999999999999988899999999999999999999863 3566889999999999999999767754
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=177.31 Aligned_cols=71 Identities=28% Similarity=0.389 Sum_probs=61.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCc--cCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 126 GNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG--IIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 567889999999999998788889999999999999999986 45677889999999999999999757653
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=173.60 Aligned_cols=165 Identities=26% Similarity=0.328 Sum_probs=130.5
Q ss_pred CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc
Q 046279 37 FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116 (300)
Q Consensus 37 ~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 116 (300)
..+++|++|++++|.+++.+|.. +..+++|+.|++++|++..++. .+..+..+++|++|++++|.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~--------------~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSK--------------IAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH--------------HHHHHTTCTTCCEEECCSSC
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcccc--------------chHHHhhCCCCCEEECCCCc
Confidence 46889999999999999667765 7899999999999998875432 12345678999999999999
Q ss_pred CCcCCCh-hhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 117 FHGEVPE-VLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 117 l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 9975665 478889999999999999877776654 78999999999998 77887779999999999999998 5665
Q ss_pred CCCCCCCCCCcccCCcCCCCCCCCCCCCC
Q 046279 196 GNQFNTFDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 196 ~~~~~~~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
. .+..........+.+|++.|+|..
T Consensus 462 ~----~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 462 G----IFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp T----TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred H----HhccCCcccEEECcCCCCcccCCc
Confidence 3 233333344556677777777764
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=6.4e-21 Score=179.50 Aligned_cols=170 Identities=26% Similarity=0.301 Sum_probs=136.4
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCce
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFY 84 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~ 84 (300)
+||..+. +++++|||++|+|++..+..| .++++|++|+|++|.|+ .+|++.|.++++|++|++++|+++.++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f--~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~--- 116 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA--- 116 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC---
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHH--hCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC---
Confidence 4554331 378999999999988666677 88999999999999998 777677889999999999999887654
Q ss_pred eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCC-CCCccccCCCCCCEEeCCCC
Q 046279 85 YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTG-NIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N 163 (300)
...|..+++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 117 -------------~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 117 -------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp -------------GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred -------------HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 3345678899999999999997777788999999999999999875 35778888999999999999
Q ss_pred ccCccCchhhhcCCCC----CeEEcccccccccCCC
Q 046279 164 KLHGIIPEQLLAVTAL----ASLNLSYNQLRGRIPR 195 (300)
Q Consensus 164 ~l~~~~~~~l~~l~~L----~~L~l~~N~l~~~~p~ 195 (300)
++++..+..+..+.++ ..++++.|.++...|.
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 9998888777665444 4688888888854443
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1e-20 Score=178.06 Aligned_cols=209 Identities=21% Similarity=0.316 Sum_probs=133.7
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC------
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG------ 82 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~------ 82 (300)
....+++|++|++++|.+....+.......+.+|++|+++.|.+. .++.. +..+++|+.+++..++......
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccccccccc
Confidence 345677888888888877532221111144566666776666665 33333 4556666666666554422211
Q ss_pred ceeeeeEEEe---ecCchhHHHHhcccccEEEccCCcCC-cCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEE
Q 046279 83 FYYLDSVTVA---MKGQDVLLYKILIIFRTLDFSSNRFH-GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESL 158 (300)
Q Consensus 83 ~~~l~~~~~~---~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (300)
...+..+... .....+..+..++.++.|++++|.+. +..|..|..+++|++|++++|++++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 1112222222 22234445566788889999888744 4567788888899999999999887778888888999999
Q ss_pred eCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 159 DLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 159 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+|++|+|++..|..|..+++|++|++++|+|++..|.... .+. .......+.+||+.|+|.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~--~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFP--SSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCC--TTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhh--CcCCEEEeeCCCCcccCC
Confidence 9999998888888888888999999999999877665321 110 122334455566666664
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.8e-21 Score=179.20 Aligned_cols=182 Identities=21% Similarity=0.309 Sum_probs=141.9
Q ss_pred hcCCCCCEEEccCCcccCCC--CCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC------C
Q 046279 11 GSLSELKILVLRSNRFYGPL--CKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG------G 82 (300)
Q Consensus 11 ~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~------~ 82 (300)
..+++|++|++++|.+++.. +..+ ..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+.... .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSD--FGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHH--HTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccc--cccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence 56777777777777776532 3333 56677777777777777 55545 677777777777777664332 2
Q ss_pred ceeeeeEEEeecC---chhHHHHhcccccEEEccCCcCC-cCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEE
Q 046279 83 FYYLDSVTVAMKG---QDVLLYKILIIFRTLDFSSNRFH-GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESL 158 (300)
Q Consensus 83 ~~~l~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (300)
...+..+.+..+. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 2234444443332 33455677999999999999997 5688899999999999999999998889999999999999
Q ss_pred eCCCCccCccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 159 DLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 159 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999888888999999999999999999999875
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2e-20 Score=174.45 Aligned_cols=158 Identities=27% Similarity=0.384 Sum_probs=91.0
Q ss_pred CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeec
Q 046279 15 ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMK 94 (300)
Q Consensus 15 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~ 94 (300)
+|++|++++|.+..... . ..+++|++|++++|.+++.+|.. +..+++|+.|++++|++..++..
T Consensus 332 ~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~----------- 395 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVC--P--PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKV----------- 395 (562)
T ss_dssp CCSEEEEESSCCCCCCC--C--SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHH-----------
T ss_pred cceEEEccCCCcccccC--c--cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccc-----------
Confidence 45666666665543211 1 34667777777777777545544 56677777777777766544311
Q ss_pred CchhHHHHhcccccEEEccCCcCCcCCCh-hhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhh
Q 046279 95 GQDVLLYKILIIFRTLDFSSNRFHGEVPE-VLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQL 173 (300)
Q Consensus 95 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 173 (300)
+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+
T Consensus 396 ---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 396 ---ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp ---HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred ---hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 12234456666666666666653333 355566666666666666554444332 46666666666666 445544
Q ss_pred hcCCCCCeEEcccccccccCCC
Q 046279 174 LAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 174 ~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
..+++|++|++++|+++ .+|.
T Consensus 470 ~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 470 THLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp TSSCCCSEEECCSSCCC-CCCT
T ss_pred cCCCCCCEEECCCCCCC-CCCH
Confidence 56666666666666666 4443
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.5e-20 Score=174.48 Aligned_cols=162 Identities=23% Similarity=0.297 Sum_probs=110.0
Q ss_pred ccchhh-hcCCCCCEEEccCCcccCCCC---CCCCCCCCCCCcEEEcccCCCcccCcH--HHHhCccccccccccccccc
Q 046279 5 TFPCWL-GSLSELKILVLRSNRFYGPLC---KSNSTFPFQALRIIDLSHNEFTGSLPR--TIFVSMEAMKIVDEMEFGLQ 78 (300)
Q Consensus 5 ~ip~~~-~~l~~L~~L~Ls~n~i~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~lp~--~~~~~l~~L~~L~l~~n~l~ 78 (300)
.+|.++ +.+++|++|++++|.+++..| ..+ ..+++|++|++++|.++ .++. ..+..+++|+.|++++|++.
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK--GAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT--TSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhh--hccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc
Confidence 467766 578999999999999887543 223 66889999999999998 6653 45788899999999999887
Q ss_pred ccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEE
Q 046279 79 YIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESL 158 (300)
Q Consensus 79 ~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 158 (300)
.++... ..+++|++|++++|.++ .+|..+ .++|++|++++|++++.. ..+++|++|
T Consensus 401 ~lp~~~-----------------~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 401 PMPDSC-----------------QWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp CCCSCC-----------------CCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred cCChhh-----------------cccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence 665421 23566777777777766 333322 246677777777766432 356667777
Q ss_pred eCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 159 DLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 159 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
++++|+++ .+|. ...+++|++|++++|++++..|.
T Consensus 457 ~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 457 YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence 77777766 4444 34566777777777777655443
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=8.8e-21 Score=176.10 Aligned_cols=170 Identities=21% Similarity=0.240 Sum_probs=98.5
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG 82 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~ 82 (300)
++..|.+|+++++|++|+|++|++++..|..+ ..+++|++|++++|.++ .++...+..+++|++|++++|.+..++.
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccch
Confidence 34445556666666666666666655444544 55566666666666665 4444445566666666666665543211
Q ss_pred ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC-ChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 83 FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV-PEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
+..+..+++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 116 ---------------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 116 ---------------TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp ---------------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ---------------hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 112344566666666666633233 3456666666666666666666666666666666666666
Q ss_pred CCccCccCchh-hhcCCCCCeEEcccccccc
Q 046279 162 FNKLHGIIPEQ-LLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 162 ~N~l~~~~~~~-l~~l~~L~~L~l~~N~l~~ 191 (300)
+|.+.. +|.. +..+++|++|++++|.+++
T Consensus 181 ~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 181 LSESAF-LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CSBSTT-HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCcccc-cchhhHhhcccccEEEccCCcccc
Confidence 666652 3333 3456777777777777765
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-20 Score=172.91 Aligned_cols=180 Identities=20% Similarity=0.163 Sum_probs=138.4
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHH----------------HHhCcc
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRT----------------IFVSME 65 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~----------------~~~~l~ 65 (300)
|++..|.+|+.+++|++|+|++|.+++..| + ..+++|++|+|++|.++ .+|.. ....++
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l~~~~~~~l~ 120 (487)
T 3oja_A 46 LSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQ 120 (487)
T ss_dssp CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCCCCEEECCCS
T ss_pred CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcCCCCCccccC
Confidence 567778899999999999999999987554 4 67888888888888776 33311 012356
Q ss_pred cccccccccccccccCC-----ceeeeeEEEeecCch---hHHH-HhcccccEEEccCCcCCcCCChhhcCCCCCCEEeC
Q 046279 66 AMKIVDEMEFGLQYIGG-----FYYLDSVTVAMKGQD---VLLY-KILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNL 136 (300)
Q Consensus 66 ~L~~L~l~~n~l~~l~~-----~~~l~~~~~~~~~~~---~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 136 (300)
+|+.|++++|.+..+.. +..+..+.++.+.+. +..+ ..+++|+.|+|++|.+++..+ +..+++|+.|++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L 198 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDL 198 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEEC
Confidence 67888888888765432 234555555555433 3333 368999999999999996632 346899999999
Q ss_pred CCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 137 SHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 137 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 199 s~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 9999995 55568899999999999999995 6777889999999999999998
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=159.58 Aligned_cols=183 Identities=20% Similarity=0.214 Sum_probs=129.2
Q ss_pred Cccccchhh--hcCCCCCEEEccCCcccCCCCCC--CCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc
Q 046279 2 ISDTFPCWL--GSLSELKILVLRSNRFYGPLCKS--NSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 2 l~g~ip~~~--~~l~~L~~L~Ls~n~i~~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
+++.+|..+ +.+++|++|+|++|.+++..+.. .....+++|++|++++|.+. .++...+..+++|+.|++++|++
T Consensus 103 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 103 ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTT
T ss_pred eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCC
Confidence 567777777 78888888888888887644311 11145788888888888887 55544477888888888888875
Q ss_pred cc---c------CCceeeeeEEEeecCch--hH----HHHhcccccEEEccCCcCCcCCChhhcCC---CCCCEEeCCCC
Q 046279 78 QY---I------GGFYYLDSVTVAMKGQD--VL----LYKILIIFRTLDFSSNRFHGEVPEVLGNF---KSLKVLNLSHN 139 (300)
Q Consensus 78 ~~---l------~~~~~l~~~~~~~~~~~--~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~ls~n 139 (300)
.. + .....+..+.+..+.+. +. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|
T Consensus 182 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 182 LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 32 1 22333444445444443 12 34567888888888888887767666665 68888888888
Q ss_pred CCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 140 SLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 888 6676664 7888888888888854 33 567788888888888886
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=2e-19 Score=157.47 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=82.3
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc---eee
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF---YYL 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~---~~l 86 (300)
+..+++|++|++++|......+. + ..+++|++|++++|.+. .++. +..+++|+.|++++|.+..++.. ..+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~--~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-L--SNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-G--TTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred hccCCceeEEECCCCCCcccccc-h--hhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCcc
Confidence 55666666666666644332222 3 45555666666666555 3332 45555555555555555433321 112
Q ss_pred eeEEEeecCchhH-HHHhcccccEEEccCCcCCcCCC--------------------hhhcCCCCCCEEeCCCCCCCCCC
Q 046279 87 DSVTVAMKGQDVL-LYKILIIFRTLDFSSNRFHGEVP--------------------EVLGNFKSLKVLNLSHNSLTGNI 145 (300)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--------------------~~~~~l~~L~~L~ls~n~l~~~~ 145 (300)
..+.+..+.+... .+..+++|++|++++|.+++..+ +.+..+++|++|++++|.+++.
T Consensus 202 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred ceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-
Confidence 2222222221111 13334444444444444442211 2344445555555555555422
Q ss_pred CccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccccc
Q 046279 146 PASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 146 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 2344455555555555555544455555555555555555555533
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2e-20 Score=155.46 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=98.0
Q ss_pred ccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccc-ccccCCc-----eeeeeEEEee-cC---
Q 046279 26 FYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFG-LQYIGGF-----YYLDSVTVAM-KG--- 95 (300)
Q Consensus 26 i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~-l~~l~~~-----~~l~~~~~~~-~~--- 95 (300)
++. +|. + .++|++|++++|.++ .+|...|..+++|+.|++++|. ++.++.. ..+..+.+.. +.
T Consensus 23 l~~-ip~-~----~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 23 IQR-IPS-L----PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp CSS-CCC-C----CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccc-cCC-C----CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 543 565 5 348999999999999 7777668999999999999997 8766532 2233343433 22
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCC---EEeCCCC-CCCCCCCccccCCCCCC-EEeCCCCccCccCc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLK---VLNLSHN-SLTGNIPASLGNMTALE-SLDLSFNKLHGIIP 170 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~ 170 (300)
+....+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++...+
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 233344556666666666666664 443 55566665 6666666 66644444566666666 66666666663333
Q ss_pred hhhhcCCCCCeEEccccc-cc
Q 046279 171 EQLLAVTALASLNLSYNQ-LR 190 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~-l~ 190 (300)
..+.. ++|++|++++|+ ++
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCC
T ss_pred hhcCC-CCCCEEEcCCCCCcc
Confidence 33333 566666666663 65
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.1e-19 Score=153.84 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=93.4
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc---eee
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF---YYL 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~---~~l 86 (300)
++.+++|++|++++|.+... + .+ ..+++|++|++++|.++ .++. +..+++|+.|++++|.+..++.. ..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~--~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GI--QYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TG--GGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hH--hcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChhhccCCCC
Confidence 34567777777777777653 2 24 56777777777777777 5554 67777777777777776554321 112
Q ss_pred eeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 87 DSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+.+..+.+.. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 222222111110 1233455556666666655533 345555566666666665553322 55555666666666655
Q ss_pred CccCchhhhcCCCCCeEEccccccc
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
++ ++ .+..+++|+.|++++|+++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 53 22 2555556666666666555
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=6.5e-20 Score=147.96 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=126.7
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeE
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSV 89 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~ 89 (300)
.+.+++|++|++++|.++. ++ .+ ..+++|++|++++|.++ .++ . +..+++|+.|++++|.+.....
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~-~l--~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~------- 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LT-GI--EYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKI------- 105 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CT-TG--GGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGS-------
T ss_pred hhhcCCccEEeccCCCccC-hH-HH--hcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccC-------
Confidence 4678899999999999985 45 45 77899999999999887 665 3 7889999999999998864211
Q ss_pred EEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCC-CCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 90 TVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNS-LTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 90 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
..+..+++|++|++++|.+++..+..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 106 ---------~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 106 ---------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp ---------CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred ---------hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-
Confidence 112457899999999999998888899999999999999998 66 555 68899999999999999985
Q ss_pred CchhhhcCCCCCeEEcccccccc
Q 046279 169 IPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
++ .+..+++|++|++++|++.+
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC----
T ss_pred hH-HhccCCCCCEEEeeCcccCC
Confidence 34 68899999999999999863
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=149.77 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=131.7
Q ss_pred CcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC
Q 046279 42 LRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV 121 (300)
Q Consensus 42 L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 121 (300)
-+.+++++|.++ .+|..+ ...++.|++++|.+..++.. ..+..+++|+.|++++|.+++..
T Consensus 13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~---------------~~~~~l~~L~~L~L~~N~i~~i~ 73 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEAT---------------GIFKKLPQLRKINFSNNKITDIE 73 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCC---------------CCGGGCTTCCEEECCSSCCCEEC
T ss_pred CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCch---------------hhhccCCCCCEEECCCCcCCEEC
Confidence 468999999998 888653 34578999999998766321 22456899999999999999888
Q ss_pred ChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCC
Q 046279 122 PEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNT 201 (300)
Q Consensus 122 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 201 (300)
+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..
T Consensus 74 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----- 148 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA----- 148 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-----
T ss_pred HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-----
Confidence 889999999999999999999888888999999999999999999988999999999999999999999776753
Q ss_pred CCCCcccCCcCCCCCCCCCCCCC
Q 046279 202 FDNNSYIGNIHLCGEPLTATCSN 224 (300)
Q Consensus 202 ~~~~~~~~n~~l~~~~~~~~C~~ 224 (300)
+..+.......+.+|++.|+|..
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTCTTCCEEECCSCCEECSGGG
T ss_pred hcCCCCCCEEEecCcCCcCCCch
Confidence 33333344556677777777763
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.9e-19 Score=154.16 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=133.2
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY 85 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 85 (300)
+|. ++.+++|++|+|++|.+++. + .+ ..+++|++|++++|.++ .++. +..+++|+.|++++|.+..++.
T Consensus 78 ~~~-~~~l~~L~~L~L~~n~l~~~-~-~~--~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--- 146 (308)
T 1h6u_A 78 LAP-LKNLTKITELELSGNPLKNV-S-AI--AGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--- 146 (308)
T ss_dssp CGG-GTTCCSCCEEECCSCCCSCC-G-GG--TTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG---
T ss_pred Chh-HccCCCCCEEEccCCcCCCc-h-hh--cCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc---
Confidence 444 89999999999999999873 3 45 78999999999999999 6764 8899999999999999876643
Q ss_pred eeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 86 LDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 86 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
+..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.. . +..+++|++|++++|++
T Consensus 147 ---------------l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 147 ---------------LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ---------------GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCC
T ss_pred ---------------ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCcc
Confidence 35689999999999999954 44 889999999999999999543 3 88999999999999999
Q ss_pred CccCchhhhcCCCCCeEEcccccccc
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
++..+ +..+++|+.|++++|++++
T Consensus 208 ~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 208 SDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Ccccc--ccCCCCCCEEEccCCeeec
Confidence 96543 8899999999999999984
No 84
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=9.2e-20 Score=149.67 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=127.8
Q ss_pred CcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC
Q 046279 42 LRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV 121 (300)
Q Consensus 42 L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 121 (300)
-+.++++++.++ .+|..+ .++++.|++++|++..++.. .+..+++|+.|+|++|.+++..
T Consensus 13 ~~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~----------------~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPG----------------AFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TTEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTT----------------SSTTCTTCCEEECCSSCCCEEC
T ss_pred CCEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHh----------------HhhCCCCCCEEECCCCcCCCcC
Confidence 368999999999 888653 36899999999998766432 3355889999999999999888
Q ss_pred ChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCC
Q 046279 122 PEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNT 201 (300)
Q Consensus 122 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 201 (300)
|..|.++++|++|++++|.++...+..|..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+..
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----- 147 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT----- 147 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH-----
Confidence 999999999999999999999666666889999999999999999888999999999999999999999555432
Q ss_pred CCCCcccCCcCCCCCCCCCCCC
Q 046279 202 FDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 202 ~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+..........+.+||+.|+|.
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSGG
T ss_pred HhCCCCCCEEEeCCCCcCCCCc
Confidence 2222223344556666666665
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.4e-19 Score=154.91 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=133.6
Q ss_pred CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---ceeeeeEEE
Q 046279 15 ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG---FYYLDSVTV 91 (300)
Q Consensus 15 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~---~~~l~~~~~ 91 (300)
.+..+.+..+.+.+.. .. ..+++|+.|++++|.+. .++. +..+++|+.|++++|.+..++. +..+..+.+
T Consensus 25 ~~~~~~l~~~~~~~~~--~~--~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccccc--ch--hhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEEC
Confidence 3444566666665532 22 56899999999999998 7764 7889999999999999876543 334455555
Q ss_pred eecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCc
Q 046279 92 AMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 92 ~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
..+.+.. ..+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 98 ~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 98 DENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 5444322 2366788999999999999853 4678889999999999999854 568889999999999999986544
Q ss_pred hhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCC
Q 046279 171 EQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGN 210 (300)
Q Consensus 171 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 210 (300)
+..+++|++|++++|.+++ +|....+..+..+...+|
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCC
Confidence 8889999999999999984 454333334444444444
No 86
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=3.9e-20 Score=148.64 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=106.2
Q ss_pred CEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcH-HHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 17 KILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPR-TIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 17 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~-~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
+++++++|+++. +|..+ ..+|++|++++|.++ .++. ..+
T Consensus 11 ~~l~~s~~~l~~-ip~~~----~~~l~~L~l~~n~i~-~~~~~~~~---------------------------------- 50 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI----PLHTTELLLNDNELG-RISSDGLF---------------------------------- 50 (192)
T ss_dssp TEEECTTSCCSS-CCSCC----CTTCSEEECCSCCCC-SBCCSCSG----------------------------------
T ss_pred CEEEcCCCCcCc-CccCC----CCCCCEEECCCCcCC-ccCCcccc----------------------------------
Confidence 677888888754 56554 237788888888777 4432 112
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..
T Consensus 51 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 51 ------GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp ------GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred ------ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 33677888889999998888888999999999999999999777777888999999999999999888888888
Q ss_pred CCCCCeEEcccccccccCCC
Q 046279 176 VTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|+++|.++.
T Consensus 125 l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGG
T ss_pred CCCCCEEEeCCCCccCcCcc
Confidence 99999999999999887763
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.9e-19 Score=150.66 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=132.2
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDS 88 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~ 88 (300)
.+..+++|++|++++|.++. ++ .+ ..+++|++|++++|.++ .++. +..+++|+.|++++|++..++...
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l--~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~---- 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GM--QFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIP---- 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TG--GGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCC----
T ss_pred chhhcCcCcEEECcCCCccc-ch-HH--hhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCccc----
Confidence 57889999999999999986 44 45 77999999999999999 6775 889999999999999998776432
Q ss_pred EEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 89 VTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
.++|+.|++++|.+++. +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 105 ---------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 105 ---------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp ---------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred ---------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 17899999999999963 3588999999999999999954 4 688999999999999999976
Q ss_pred CchhhhcCCCCCeEEccccccccc
Q 046279 169 IPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6688999999999999999855
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.8e-19 Score=147.72 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=126.5
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
+.+|..+. ++|++|+|++|.+++..+..+ ..+++|++|+|++|.+. .+|...|..+++|+.|++++|.+..++.
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~- 105 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPS- 105 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccCh-
Confidence 45676543 899999999999999878877 88999999999999998 8887778999999999999999876643
Q ss_pred eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCC
Q 046279 84 YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFN 163 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 163 (300)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 106 ---------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 106 ---------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ---------------TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ---------------hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 23456899999999999999 78888999999999999999999766677999999999999999
Q ss_pred ccCccCc
Q 046279 164 KLHGIIP 170 (300)
Q Consensus 164 ~l~~~~~ 170 (300)
.+....+
T Consensus 170 ~~~c~c~ 176 (229)
T 3e6j_A 170 PWDCECR 176 (229)
T ss_dssp CBCTTBG
T ss_pred CccCCcc
Confidence 9986543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=8.6e-21 Score=168.78 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=90.9
Q ss_pred hhhcCCCCCEEEccCCcc---cCCCCCCC-----CCCCCCCCcEEEcccCCCcc----cCcHHHHhCccccccccccccc
Q 046279 9 WLGSLSELKILVLRSNRF---YGPLCKSN-----STFPFQALRIIDLSHNEFTG----SLPRTIFVSMEAMKIVDEMEFG 76 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i---~~~~~~~~-----~~~~l~~L~~L~Ls~n~l~~----~lp~~~~~~l~~L~~L~l~~n~ 76 (300)
.+..+++|++|+|++|.+ ++.+|..+ .+..+++|++|+|++|.+.+ .+|.. +..+++|+.|++++|.
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCC
Confidence 355566666666666433 22222211 00235566666666666653 13333 4556666666666665
Q ss_pred cccc-----CCc-------------eeeeeEEEeecCchh-------HHHHhcccccEEEccCCcCCc-----CCChhhc
Q 046279 77 LQYI-----GGF-------------YYLDSVTVAMKGQDV-------LLYKILIIFRTLDFSSNRFHG-----EVPEVLG 126 (300)
Q Consensus 77 l~~l-----~~~-------------~~l~~~~~~~~~~~~-------~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~ 126 (300)
+... +.. ..+..+.+..+.+.. ..+..+++|++|++++|.++. ..+..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 5311 110 233334444333321 123345566666666666552 1222455
Q ss_pred CCCCCCEEeCCCCCCC----CCCCccccCCCCCCEEeCCCCccCcc----Cchhhhc--CCCCCeEEcccccccc
Q 046279 127 NFKSLKVLNLSHNSLT----GNIPASLGNMTALESLDLSFNKLHGI----IPEQLLA--VTALASLNLSYNQLRG 191 (300)
Q Consensus 127 ~l~~L~~L~ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~--l~~L~~L~l~~N~l~~ 191 (300)
.+++|++|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|++|++++|.+++
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 5566666666666653 24455555566666666666665543 3344432 5566666666666654
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.9e-19 Score=164.25 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=118.3
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc---eee
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF---YYL 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~---~~l 86 (300)
+..+++|+.|++++|.+... + .+ ..+++|+.|+|++|.+. .++. +..+++|+.|++++|.+..++.. ..|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l--~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GI--QYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TG--GGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HH--ccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCChhhccCCCC
Confidence 34556666666666666542 2 23 55666666666666666 4443 55666666666666666544322 223
Q ss_pred eeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 87 DSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+.+..+.+.. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 333333332211 2356689999999999999865 678899999999999999996655 88999999999999999
Q ss_pred CccCchhhhcCCCCCeEEccccccccc
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
++. ..+..+++|+.|+|++|++++.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCC
Confidence 864 3588999999999999999853
No 91
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.4e-18 Score=157.76 Aligned_cols=166 Identities=22% Similarity=0.164 Sum_probs=92.8
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC--Cceee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG--GFYYL 86 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~--~~~~l 86 (300)
+++.+++|++|++++|.+++. + + ..+++|++|++++|.++ .+| +..+++|+.|++++|.+..++ ....+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~--~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L~~L~L~~N~l~~l~~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--L--SQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--C--TTCTTCSEEECCSSCCS-CCC---CTTCTTCCEEECCSSCCSCCCCTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--c--ccCCCCCEEECcCCCCc-eee---cCCCCcCCEEECCCCcCCeecCCCCCcC
Confidence 466666666666666666652 2 3 45566666666666665 343 455566666666666554332 11122
Q ss_pred eeEEEeecCchhH----------------------HHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC
Q 046279 87 DSVTVAMKGQDVL----------------------LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144 (300)
Q Consensus 87 ~~~~~~~~~~~~~----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 144 (300)
..+.+..+.+... .+..+++|++|++++|.+++ +| ++.+++|+.|++++|.+++.
T Consensus 130 ~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 130 TYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 2222222221111 23334555555666655554 23 55566666666666666643
Q ss_pred CCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccccc
Q 046279 145 IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 145 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
.+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 25666777777777777775 44 66677777777777777754
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.1e-18 Score=152.85 Aligned_cols=170 Identities=20% Similarity=0.236 Sum_probs=137.6
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---ceee
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG---FYYL 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~---~~~l 86 (300)
++.+++|++|++++|.+.+..+ + ..+++|+.|++++|.+. .++. +..+++|+.|++++|.+..++. ...+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--L--ASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSPLANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hccCCCCCEEEccCCccccccc--c--cCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcchhcCCCC
Confidence 7889999999999999887433 4 67889999999999998 5554 7788999999999998866543 2334
Q ss_pred eeEEEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 87 DSVTVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 87 ~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+.+..+.+.. ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 455554443322 3466789999999999999964 4688999999999999999988888999999999999999999
Q ss_pred CccCchhhhcCCCCCeEEccccccc
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
++..| +..+++|++|++++|+|+
T Consensus 324 ~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccC--hhhhhccceeehhhhccc
Confidence 97655 889999999999999986
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.8e-18 Score=157.64 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=82.6
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc---eee
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF---YYL 86 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~---~~l 86 (300)
++++++|++|++++|.+++. ..+ ..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+..++.. ..+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 245 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVL--AKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDIGTLASLTNL 245 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred hccCCCCCEEECcCCcCCCC--hhh--ccCCCCCEEEecCCcccc-ccc--ccccCCCCEEECCCCCcccchhhhcCCCC
Confidence 66777777777777776653 123 556667777777776663 322 45566666666666665443221 122
Q ss_pred eeEEEeecCchhH-HHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 87 DSVTVAMKGQDVL-LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+.+..+.+... .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 2333322221111 13445555555555555553222 4445555555555555543222 34444455555554444
Q ss_pred CccCchhhhcCCCCCeEEccccccc
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
++..| +..+++|++|++++|.++
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCchh--hccCccCCEeECCCCccC
Confidence 43322 334444444444444444
No 94
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=4.1e-18 Score=155.24 Aligned_cols=168 Identities=22% Similarity=0.294 Sum_probs=77.0
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC--------
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG-------- 81 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~-------- 81 (300)
+..+++|++|+|++|.+++..+ + ..+++|++|++++|.+. .++. +..+++|+.|++++|.+..++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--L--KNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh--h--hccccCCEEECCCCccc-cChh--hcCCCCCCEEECCCCCCCCChHHcCCCCC
Confidence 4555556666666655554322 3 44555555555555554 3332 444555555555554443322
Q ss_pred --------------C---ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC
Q 046279 82 --------------G---FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN 144 (300)
Q Consensus 82 --------------~---~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 144 (300)
. +..+..+.+.........+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 1 11111121111111112244556666666666666532 2355556666666666665543
Q ss_pred CCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 145 IPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 145 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.| ++.+++|++|++++|.+++. +.+..+++|++|++++|.++
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 32 33444444444444444421 12334444444444444443
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.4e-18 Score=162.51 Aligned_cols=184 Identities=18% Similarity=0.188 Sum_probs=139.9
Q ss_pred CCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC---ceeeeeE
Q 046279 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG---FYYLDSV 89 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~---~~~l~~~ 89 (300)
+..+..+.++.+.+....+ . ..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+..++. +..|..+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~--~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--Q--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--H--HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc--h--hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChhhccCCCCCEE
Confidence 3445666777777766432 2 56899999999999998 7774 8899999999999999876654 2334555
Q ss_pred EEeecCchh-HHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 90 TVAMKGQDV-LLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 90 ~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
.+..+.+.. ..+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 93 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 93 FLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp ECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred ECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 554443321 245678999999999999985 3 4588999999999999999954 6788999999999999999976
Q ss_pred CchhhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCC
Q 046279 169 IPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGN 210 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 210 (300)
.| +..+++|+.|+|++|+|++ +|....+..+..+.+.+|
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSE
T ss_pred hh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCC
Confidence 55 8899999999999999985 454334444444444443
No 96
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=5.2e-18 Score=136.30 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=108.0
Q ss_pred CEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCc
Q 046279 17 KILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQ 96 (300)
Q Consensus 17 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~ 96 (300)
+++++++|.++. +|..+ .++|++|++++|.++ .+|.. +
T Consensus 13 ~~l~~~~~~l~~-ip~~~----~~~l~~L~L~~n~i~-~ip~~-~----------------------------------- 50 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI----PRDVTELYLDGNQFT-LVPKE-L----------------------------------- 50 (193)
T ss_dssp TEEECTTSCCSS-CCSCC----CTTCCEEECCSSCCC-SCCGG-G-----------------------------------
T ss_pred CEEEcCCCCCCc-CCCCC----CCCCCEEECCCCcCc-hhHHH-h-----------------------------------
Confidence 577888888765 55544 357888888888887 66633 2
Q ss_pred hhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcC
Q 046279 97 DVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAV 176 (300)
Q Consensus 97 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 176 (300)
..+++|+.|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+|++|.|+...+..|..+
T Consensus 51 -----~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 51 -----SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp -----GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred -----hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 336677889999999998778889999999999999999998878889999999999999999997777778899
Q ss_pred CCCCeEEcccccccccCC
Q 046279 177 TALASLNLSYNQLRGRIP 194 (300)
Q Consensus 177 ~~L~~L~l~~N~l~~~~p 194 (300)
++|+.|++++|++.+.+.
T Consensus 126 ~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 126 SALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTCCEEECCSSCEECSGG
T ss_pred ccccEEEeCCCCeecCCc
Confidence 999999999999987765
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.5e-18 Score=159.40 Aligned_cols=170 Identities=23% Similarity=0.319 Sum_probs=131.6
Q ss_pred CccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 2 ISDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
|++ +|..+ .++|++|+|++|.|+. +| .+ +++|++|++++|.++ .+|. +.. +|+.|++++|.+..++
T Consensus 71 L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip-~~----l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~Ls~N~l~~lp 136 (571)
T 3cvr_A 71 LSS-LPDNL--PPQITVLEITQNALIS-LP-EL----PASLEYLDACDNRLS-TLPE--LPA--SLKHLDVDNNQLTMLP 136 (571)
T ss_dssp CSC-CCSCC--CTTCSEEECCSSCCSC-CC-CC----CTTCCEEECCSSCCS-CCCC--CCT--TCCEEECCSSCCSCCC
T ss_pred CCc-cCHhH--cCCCCEEECcCCCCcc-cc-cc----cCCCCEEEccCCCCC-Ccch--hhc--CCCEEECCCCcCCCCC
Confidence 344 77755 3789999999999984 56 33 689999999999998 5886 433 8999999999998777
Q ss_pred C-ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCC-----
Q 046279 82 G-FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL----- 155 (300)
Q Consensus 82 ~-~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L----- 155 (300)
. ...+..+.+..+.+.. ....+++|+.|++++|.+++ +|. +. ++|+.|++++|.|+ .+|. +.. +|
T Consensus 137 ~~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 137 ELPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred CcCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 5 1234445555444432 11257899999999999996 666 65 89999999999999 6776 654 77
Q ss_pred --CEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 156 --ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 156 --~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+.|++++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 99999999999 6788888899999999999999987775
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=4.2e-19 Score=156.59 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=132.0
Q ss_pred CCccccchhhhcCCCCCEEEccCCcccCCCC----CCCCCCCCC-CCcEEEcccCCCcccCcHHHHhCc-----cccccc
Q 046279 1 MISDTFPCWLGSLSELKILVLRSNRFYGPLC----KSNSTFPFQ-ALRIIDLSHNEFTGSLPRTIFVSM-----EAMKIV 70 (300)
Q Consensus 1 ~l~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~l~-~L~~L~Ls~n~l~~~lp~~~~~~l-----~~L~~L 70 (300)
.++|.+|..+...++|++|+|++|.+++..+ ..+ ..++ +|++|+|++|.+++..+.. +..+ ++|+.|
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSL 85 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEE
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEE
Confidence 3678888888777789999999999987554 444 5677 8999999999998444544 4443 889999
Q ss_pred ccccccccccCCc----------eeeeeEEEeecCchhH---HHH----h-cccccEEEccCCcCCcCCC----hhhcCC
Q 046279 71 DEMEFGLQYIGGF----------YYLDSVTVAMKGQDVL---LYK----I-LIIFRTLDFSSNRFHGEVP----EVLGNF 128 (300)
Q Consensus 71 ~l~~n~l~~l~~~----------~~l~~~~~~~~~~~~~---~~~----~-l~~L~~L~Ls~n~l~~~~~----~~~~~l 128 (300)
++++|.+...... ..+..+.+..+.+... .+. . ..+|++|++++|.+++..+ ..+..+
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 9999998654321 3455555555544322 222 2 3588888888888885443 334555
Q ss_pred C-CCCEEeCCCCCCCCCCCccc----cCC-CCCCEEeCCCCccCcc----Cchhhhc-CCCCCeEEccccccccc
Q 046279 129 K-SLKVLNLSHNSLTGNIPASL----GNM-TALESLDLSFNKLHGI----IPEQLLA-VTALASLNLSYNQLRGR 192 (300)
Q Consensus 129 ~-~L~~L~ls~n~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~----~~~~l~~-l~~L~~L~l~~N~l~~~ 192 (300)
+ +|++|++++|.+++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 5 88888888888876655433 344 5888888888888864 4445555 35888888888888743
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=5.1e-18 Score=133.18 Aligned_cols=137 Identities=22% Similarity=0.258 Sum_probs=106.5
Q ss_pred CCCCCEEEccCCccc-CCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEE
Q 046279 13 LSELKILVLRSNRFY-GPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTV 91 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~ 91 (300)
.++|++|++++|.++ +.+|..+ ..+++|++|++++|.++ .++ . +
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~-~~~-~-~------------------------------ 67 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLI-SVS-N-L------------------------------ 67 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCC-CCS-S-C------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCC-Chh-h-h------------------------------
Confidence 456777777777776 4555555 56677777777777766 331 1 1
Q ss_pred eecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCC-CccccCCCCCCEEeCCCCccCccCc
Q 046279 92 AMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI-PASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 68 ----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 68 ----------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ----------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ----------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 23677889999999999778888888999999999999998542 2788899999999999999996655
Q ss_pred ---hhhhcCCCCCeEEcccccccccCCC
Q 046279 171 ---EQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 171 ---~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
..+..+++|++|++++|.+. .+|.
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHHHHHHhCccCcEecCCCCChh-hccc
Confidence 47889999999999999988 5554
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=7.2e-18 Score=153.13 Aligned_cols=174 Identities=16% Similarity=0.097 Sum_probs=121.0
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC-
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG- 81 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~- 81 (300)
.+..+.+++.+++|++|++++|.+++. | .+ ..+++|++|++++|.++ .+| +..+++|+.|++++|.+..++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l--~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GI--EKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLDV 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TG--GGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCCC
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hh--cccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceeec
Confidence 344556788999999999999999984 4 45 78999999999999999 566 789999999999999987653
Q ss_pred -CceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCC---------------------
Q 046279 82 -GFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHN--------------------- 139 (300)
Q Consensus 82 -~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n--------------------- 139 (300)
.+..+..+.+..+.+....+..+++|++|++++|.+++. + ++.+++|++|++++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred CCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 233455566655554443467788999999999998863 2 444555555555555
Q ss_pred -CCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 140 -SLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 140 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 4442 22 44455555555555555543 25556666666677776664 44
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.6e-18 Score=137.66 Aligned_cols=150 Identities=18% Similarity=0.235 Sum_probs=124.2
Q ss_pred CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc
Q 046279 37 FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116 (300)
Q Consensus 37 ~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 116 (300)
..+++|+.|++++|.++ .+| . +..+++|+.|++++|.+..++ .+..+++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~------------------~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN------------------PISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG------------------GGTTCTTCCEEEEECTT
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch------------------hhhcCCCCCEEEeECCc
Confidence 56789999999999999 888 4 889999999999999765543 23558999999999999
Q ss_pred CCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCc-cCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 117 FHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNK-LHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 117 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++..+..++.+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++.
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~ 176 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRG 176 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTT
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHH
Confidence 998788889999999999999999998788899999999999999998 65 555 68999999999999999984 443
Q ss_pred CCCCCCCCCCcccCC
Q 046279 196 GNQFNTFDNNSYIGN 210 (300)
Q Consensus 196 ~~~~~~~~~~~~~~n 210 (300)
...+..+..+...+|
T Consensus 177 l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEEECBC
T ss_pred hccCCCCCEEEeeCc
Confidence 233334444333333
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.1e-18 Score=158.50 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=84.3
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCC-------------cEEEcccCCCcccCcHHHHhCccccccc
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQAL-------------RIIDLSHNEFTGSLPRTIFVSMEAMKIV 70 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~lp~~~~~~l~~L~~L 70 (300)
|++|++|+++++|++|++++|.+.+.+|..+ ..+.+| ++|++++|.++ .+|. ..++|+.|
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~--~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L 96 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGN--GEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESL 96 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTS--CCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEE
T ss_pred hhCChhHhcccchhhhhccCCcccccCCccc--ccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEE
Confidence 6778888888888888888888777777766 555443 66666666666 4443 12456666
Q ss_pred ccccccccccCCc-eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccc
Q 046279 71 DEMEFGLQYIGGF-YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASL 149 (300)
Q Consensus 71 ~l~~n~l~~l~~~-~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 149 (300)
++++|.+..++.. ..+..+.+..+.+.. .....++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..+
T Consensus 97 ~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~ 172 (454)
T 1jl5_A 97 VASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP 172 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC
T ss_pred EccCCcCCccccccCCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc
Confidence 6666665554432 122223322222211 00112456666666666653 44 35556666666666666553 33322
Q ss_pred cCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 150 GNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
.+|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 173 ---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 173 ---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp ---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred ---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 355555555555553 33 3455555555555555554
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=5.2e-18 Score=148.91 Aligned_cols=181 Identities=18% Similarity=0.138 Sum_probs=91.0
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccc-cccccccccccCC-
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKI-VDEMEFGLQYIGG- 82 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~-L~l~~n~l~~l~~- 82 (300)
+||..+ .+++++|+|++|+|+...+..| .++++|++|+|++|.+.+.+|...|.+++++.. +.+..|++..++.
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSS--TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHH--cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 455544 2467777777777765433445 667777777777777654566555666665543 3444455544321
Q ss_pred ----ceeeeeEEEeec---CchhHHHHhcccccEEEccC-CcCCcCCChhhcCCC-CCCEEeCCCCCCCCCCCccccCCC
Q 046279 83 ----FYYLDSVTVAMK---GQDVLLYKILIIFRTLDFSS-NRFHGEVPEVLGNFK-SLKVLNLSHNSLTGNIPASLGNMT 153 (300)
Q Consensus 83 ----~~~l~~~~~~~~---~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l~ 153 (300)
+..+..+.+..+ ......+....++..|++.+ +.+....+..|..+. .++.|++++|.|+ .+|.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc
Confidence 112233333222 22222223334444555543 334433333444442 3555666666665 3333333344
Q ss_pred CCCEEeCCC-CccCccCchhhhcCCCCCeEEccccccc
Q 046279 154 ALESLDLSF-NKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 154 ~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+|+++++++ |.++...++.|..+++|++||+++|+|+
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 555666553 4444333344555666666666666665
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=5.2e-20 Score=171.18 Aligned_cols=175 Identities=21% Similarity=0.186 Sum_probs=118.0
Q ss_pred hcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCC-------------CcccCcHHHHhCcccccccc-ccccc
Q 046279 11 GSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNE-------------FTGSLPRTIFVSMEAMKIVD-EMEFG 76 (300)
Q Consensus 11 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~lp~~~~~~l~~L~~L~-l~~n~ 76 (300)
..+++|+.|+|++|+++. +|..+ ..+++|+.|++++|. +.+.+| ..+..+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i--~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSEL--ESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhHHh-hHHHH--HHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcc
Confidence 568889999999999874 67777 778899999987775 443444 4478888888888 55554
Q ss_pred ccccCCce------------eeeeEEEee---cCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCC
Q 046279 77 LQYIGGFY------------YLDSVTVAM---KGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSL 141 (300)
Q Consensus 77 l~~l~~~~------------~l~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l 141 (300)
+..++... .+..+.++. ..+. . +..+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred cchhhhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 43222110 122222222 2222 2 556777777777777777 6677777777777777777777
Q ss_pred CCCCCccccCCCCCCEEeCCCCccCccC-chhhhcCCCCCeEEcccccccccCC
Q 046279 142 TGNIPASLGNMTALESLDLSFNKLHGII-PEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 142 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
++ +| .+..+++|+.|+|++|.|++.. |..+..+++|+.|++++|++++..|
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 74 55 6777777777777777777665 7777777777777777777775544
No 105
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.5e-17 Score=130.35 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=100.8
Q ss_pred CCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecC
Q 046279 16 LKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKG 95 (300)
Q Consensus 16 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~ 95 (300)
.+.+++++|+++. +|..+ .++|+.|++++|.++ .+|...+..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~----~~~l~~L~l~~n~l~-~~~~~~~~~-------------------------------- 50 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI----PSSATRLELESNKLQ-SLPHGVFDK-------------------------------- 50 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC----CTTCSEEECCSSCCC-CCCTTTTTT--------------------------------
T ss_pred CCEEEecCCCCcc-CCCCC----CCCCcEEEeCCCccc-EeCHHHhcC--------------------------------
Confidence 5678888888765 45443 467888888888887 555443333
Q ss_pred chhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhc
Q 046279 96 QDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLA 175 (300)
Q Consensus 96 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 175 (300)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 51 --------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 51 --------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp --------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 566777888888887666666788888888888888888666666788888888888888888666666777
Q ss_pred CCCCCeEEcccccccccCCC
Q 046279 176 VTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 176 l~~L~~L~l~~N~l~~~~p~ 195 (300)
+++|++|++++|+++|.+|.
T Consensus 123 l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CTTCCEEECCSSCBCCCHHH
T ss_pred CcccCEEEecCCCeeccCcc
Confidence 88888888888888877663
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.5e-18 Score=151.20 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=137.1
Q ss_pred ccccchhhhcCCCCCEEEccCCcccCC-CCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc-cccc-
Q 046279 3 SDTFPCWLGSLSELKILVLRSNRFYGP-LCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF-GLQY- 79 (300)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n-~l~~- 79 (300)
++..|. +..+++|++|++++|.+++. ++..+ ..+++|++|++++|.+++..+.. +..+++|+.|++++| .++.
T Consensus 83 ~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 83 DQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp CSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH
T ss_pred cccchh-hccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH
Confidence 344444 55789999999999988754 55555 66889999999999888666654 677899999999988 5542
Q ss_pred -c----CCceeeeeEEEeec-Cch----hHHHHhcc-cccEEEccCC--cCC-cCCChhhcCCCCCCEEeCCCCC-CCCC
Q 046279 80 -I----GGFYYLDSVTVAMK-GQD----VLLYKILI-IFRTLDFSSN--RFH-GEVPEVLGNFKSLKVLNLSHNS-LTGN 144 (300)
Q Consensus 80 -l----~~~~~l~~~~~~~~-~~~----~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~ls~n~-l~~~ 144 (300)
+ .....+..+.+..+ .+. ...+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 2 22334556666655 443 33466788 9999999999 555 4567777889999999999999 7767
Q ss_pred CCccccCCCCCCEEeCCCCc-cCccCchhhhcCCCCCeEEcccc
Q 046279 145 IPASLGNMTALESLDLSFNK-LHGIIPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 145 ~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N 187 (300)
.+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 78888999999999999995 33332336788999999999998
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.8e-18 Score=150.67 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=144.0
Q ss_pred chhhhcC--CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCccc-CcHHHHhCcccccccccccccccc----
Q 046279 7 PCWLGSL--SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGS-LPRTIFVSMEAMKIVDEMEFGLQY---- 79 (300)
Q Consensus 7 p~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-lp~~~~~~l~~L~~L~l~~n~l~~---- 79 (300)
|..+..+ ++++.|++++|.+.+..+. + ..+++|++|++++|.+++. +|. .+..+++|+.|++++|.+..
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~--~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H--FSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-C--CCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-h--ccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHH
Confidence 5566777 8999999999999986555 3 5689999999999998854 554 48899999999999998742
Q ss_pred -cCCceeeeeEEEeec-Cch----hHHHHhcccccEEEccCC-cCCcC-CChhhcCCC-CCCEEeCCCC--CCC-CCCCc
Q 046279 80 -IGGFYYLDSVTVAMK-GQD----VLLYKILIIFRTLDFSSN-RFHGE-VPEVLGNFK-SLKVLNLSHN--SLT-GNIPA 147 (300)
Q Consensus 80 -l~~~~~l~~~~~~~~-~~~----~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~ls~n--~l~-~~~p~ 147 (300)
+.....+..+.+..+ .+. +..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 334445666666655 333 334667999999999999 88864 567788899 9999999999 455 34677
Q ss_pred cccCCCCCCEEeCCCCc-cCccCchhhhcCCCCCeEEccccc
Q 046279 148 SLGNMTALESLDLSFNK-LHGIIPEQLLAVTALASLNLSYNQ 188 (300)
Q Consensus 148 ~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~ 188 (300)
.+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77889999999999999 777788889999999999999995
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=6.6e-19 Score=155.31 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=137.1
Q ss_pred hhhhcCC-CCCEEEccCCcccCCCCCCCCCCCC-----CCCcEEEcccCCCcccCcHHH---HhCc-ccccccccccccc
Q 046279 8 CWLGSLS-ELKILVLRSNRFYGPLCKSNSTFPF-----QALRIIDLSHNEFTGSLPRTI---FVSM-EAMKIVDEMEFGL 77 (300)
Q Consensus 8 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~lp~~~---~~~l-~~L~~L~l~~n~l 77 (300)
.+|..++ +|++|+|++|.+++..+..+ ..+ ++|++|+|++|.+++..+..+ +..+ ++|+.|++++|.+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 7888999 89999999999988655555 443 899999999999985555432 3334 8999999999999
Q ss_pred cccCC----------ceeeeeEEEeecCchh-------HHHHhcc-cccEEEccCCcCCcCCChhh----cCC-CCCCEE
Q 046279 78 QYIGG----------FYYLDSVTVAMKGQDV-------LLYKILI-IFRTLDFSSNRFHGEVPEVL----GNF-KSLKVL 134 (300)
Q Consensus 78 ~~l~~----------~~~l~~~~~~~~~~~~-------~~~~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L 134 (300)
+..+. ...+..+.+..+.+.. ..+...+ +|++|++++|.+++..+..+ ..+ ++|++|
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 76543 1356666666665542 1223344 99999999999997776544 445 599999
Q ss_pred eCCCCCCCCC----CCccccC-CCCCCEEeCCCCccCccCchh----hhcCCCCCeEEcccccccc
Q 046279 135 NLSHNSLTGN----IPASLGN-MTALESLDLSFNKLHGIIPEQ----LLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 135 ~ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~----l~~l~~L~~L~l~~N~l~~ 191 (300)
++++|.+++. ++..+.. .++|++|++++|.+++..+.. +..+++|++|++++|.+.+
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 9999999853 4455555 459999999999999765543 4567899999999999653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.2e-17 Score=154.98 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=125.5
Q ss_pred hhhcCC-----CCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 9 WLGSLS-----ELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 9 ~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
++..++ +|+.|+|++|.+++ +|..+ +++|++|+|++|.|+ .+| ..+++|+.|++++|.+..++..
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l----~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~l 118 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LPDNL----PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPEL 118 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CCSCC----CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCCC
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cCHhH----cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcchh
Confidence 455555 99999999999988 77665 478999999999999 888 3579999999999999887762
Q ss_pred e-eeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCC
Q 046279 84 Y-YLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 84 ~-~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 162 (300)
. .+..+.+..+.+..... .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++
T Consensus 119 ~~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 119 PASLKHLDVDNNQLTMLPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred hcCCCEEECCCCcCCCCCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 2 34445554444332111 57889999999999985 555 57899999999999985 666 65 8999999999
Q ss_pred CccCccCchhhhcCCCC-------CeEEcccccccccCCC
Q 046279 163 NKLHGIIPEQLLAVTAL-------ASLNLSYNQLRGRIPR 195 (300)
Q Consensus 163 N~l~~~~~~~l~~l~~L-------~~L~l~~N~l~~~~p~ 195 (300)
|.|+ .+|. +.. +| +.|++++|.|+ .+|.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 9998 5665 443 67 99999999998 5675
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.5e-18 Score=151.90 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=144.2
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCC----CCCCCCCCCCCcEEEcccCC---CcccCcHHH------HhCcccccccc
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLC----KSNSTFPFQALRIIDLSHNE---FTGSLPRTI------FVSMEAMKIVD 71 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~l~~L~~L~Ls~n~---l~~~lp~~~------~~~l~~L~~L~ 71 (300)
.++..+..+++|++|+|++|.++...+ ..+ ..+++|++|+|++|. +.+.+|..+ +..+++|+.|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI--ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT--TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH--HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 467888999999999999999986533 234 678999999999964 445667654 47889999999
Q ss_pred cccccccc-----c----CCceeeeeEEEeecCchhH---HH----Hhc---------ccccEEEccCCcCC-cCCC---
Q 046279 72 EMEFGLQY-----I----GGFYYLDSVTVAMKGQDVL---LY----KIL---------IIFRTLDFSSNRFH-GEVP--- 122 (300)
Q Consensus 72 l~~n~l~~-----l----~~~~~l~~~~~~~~~~~~~---~~----~~l---------~~L~~L~Ls~n~l~-~~~~--- 122 (300)
+++|.+.. + .....+..+.+..+.+... .+ ..+ ++|++|++++|.++ ..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999865 2 2234566666666665422 22 223 89999999999997 3344
Q ss_pred hhhcCCCCCCEEeCCCCCCCC-----CCCccccCCCCCCEEeCCCCccC----ccCchhhhcCCCCCeEEccccccccc
Q 046279 123 EVLGNFKSLKVLNLSHNSLTG-----NIPASLGNMTALESLDLSFNKLH----GIIPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 123 ~~~~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|++++|.+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 467788999999999999873 23447888999999999999996 46788889999999999999999754
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.9e-17 Score=127.19 Aligned_cols=129 Identities=25% Similarity=0.273 Sum_probs=104.2
Q ss_pred CCCCCEEEccCCccc-CCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEE
Q 046279 13 LSELKILVLRSNRFY-GPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTV 91 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~ 91 (300)
.++|+.|++++|.++ +.+|..+ ..+++|++|++++|.++ .++ . +
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~-~-~------------------------------ 60 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLT-SIA-N-L------------------------------ 60 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTSCCC-CCT-T-C------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCCCCC-Cch-h-h------------------------------
Confidence 467888888888887 5677766 67888888888888887 331 1 2
Q ss_pred eecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCC-CCccccCCCCCCEEeCCCCccCccCc
Q 046279 92 AMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGN-IPASLGNMTALESLDLSFNKLHGIIP 170 (300)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~ 170 (300)
..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 61 ----------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 61 ----------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp ----------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred ----------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 2266788899999999977888888899999999999999853 34778899999999999999987665
Q ss_pred ---hhhhcCCCCCeEEccc
Q 046279 171 ---EQLLAVTALASLNLSY 186 (300)
Q Consensus 171 ---~~l~~l~~L~~L~l~~ 186 (300)
..+..+++|+.|++++
T Consensus 131 ~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 131 YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHCCCcccccCCC
Confidence 5788999999999864
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=131.78 Aligned_cols=114 Identities=31% Similarity=0.491 Sum_probs=93.9
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEE
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 183 (300)
.++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 346789999999998 6778999999999999999999988788899999999999999999988888999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 184 LSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 184 l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+++|.+++ +|.. .+..+.......+.+||+.|+|.
T Consensus 109 L~~N~l~~-~~~~----~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 109 LHGNDISV-VPEG----AFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCSSCCCB-CCTT----TTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCe-eChh----hhhcCccccEEEeCCCCeecCCc
Confidence 99999994 4442 22223333444566666666675
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.5e-17 Score=132.22 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=100.6
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCCCC-CCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCC
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLCKS-NSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG 82 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~ 82 (300)
+++|..+.. +|++|++++|.+++..+.. + ..+++|++|+|++|.+++..|.. |.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~-------------------- 75 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEPNA-FE-------------------- 75 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCTTT-TT--------------------
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCcccc--ccCCCCCEEECCCCCCCCcCHhH-cC--------------------
Confidence 457765543 8999999999998865542 5 78999999999999999444533 33
Q ss_pred ceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCC
Q 046279 83 FYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 162 (300)
.+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 76 --------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 76 --------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp --------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred --------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 356677888888999888888899999999999999999988899999999999999999
Q ss_pred CccCccCc
Q 046279 163 NKLHGIIP 170 (300)
Q Consensus 163 N~l~~~~~ 170 (300)
|.+.+..+
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 99987654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-18 Score=144.32 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=134.0
Q ss_pred cCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEE
Q 046279 12 SLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTV 91 (300)
Q Consensus 12 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~ 91 (300)
.+.+++.+++++|.+++.. .+ ..+++|++|++++|.++ .+| . +..+++|+.|++++|.+..++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~--~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--------- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQ--KELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--------- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CH--HHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG---------
T ss_pred HHHHHHHHHhcCCCccccc--ch--hhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh---------
Confidence 5667888899999998643 44 67899999999999998 888 3 7899999999999999876643
Q ss_pred eecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCch
Q 046279 92 AMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPE 171 (300)
Q Consensus 92 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 171 (300)
+..+++|+.|++++|.+++ ++. +.. ++|++|++++|.+++ + +.+..+++|+.|++++|++++. +
T Consensus 81 ---------l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 81 ---------LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V- 144 (263)
T ss_dssp ---------GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-
T ss_pred ---------hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-
Confidence 3568999999999999995 443 233 999999999999995 3 3588999999999999999964 4
Q ss_pred hhhcCCCCCeEEcccccccccCCCCCCCCCCCCCcccCCc
Q 046279 172 QLLAVTALASLNLSYNQLRGRIPRGNQFNTFDNNSYIGNI 211 (300)
Q Consensus 172 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 211 (300)
.+..+++|++|++++|++++. +....+..+..+...+|.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 689999999999999999965 433333444444444443
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.9e-18 Score=163.10 Aligned_cols=158 Identities=22% Similarity=0.212 Sum_probs=117.8
Q ss_pred CCEEEccCCcccCC---------CCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceee
Q 046279 16 LKILVLRSNRFYGP---------LCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYL 86 (300)
Q Consensus 16 L~~L~Ls~n~i~~~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l 86 (300)
|+.++|+.|.|.+. .+..+ ..+++|+.|+|++|.+. .+|..+ ..+++|+.|++++|.+..++.
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~--~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~L~~L~Ls~N~l~~lp~---- 264 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSK--YDDQLWHALDLSNLQIF-NISANI-FKYDFLTRLYLNGNSLTELPA---- 264 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGG-GGCCSCSCCBCTTSCCSCCCG----
T ss_pred hhcCccCcccccCccccccceecChhhh--ccCCCCcEEECCCCCCC-CCChhh-cCCCCCCEEEeeCCcCcccCh----
Confidence 45555555555432 24445 67899999999999998 898874 489999999999999876643
Q ss_pred eeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccC
Q 046279 87 DSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 166 (300)
.+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+
T Consensus 265 -------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 265 -------------EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp -------------GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred -------------hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 2356899999999999999 78999999999999999999998 78888999999999999999999
Q ss_pred ccCchhhhcCCC-CCeEEcccccccccCCCC
Q 046279 167 GIIPEQLLAVTA-LASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 167 ~~~~~~l~~l~~-L~~L~l~~N~l~~~~p~~ 196 (300)
+.+|..+..+.. +..+++++|.++|.+|..
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 888887765422 234678888888888764
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.4e-17 Score=149.58 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=31.3
Q ss_pred cccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCc--cCchhhhcC-------
Q 046279 106 IFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHG--IIPEQLLAV------- 176 (300)
Q Consensus 106 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l------- 176 (300)
+|++|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 45555555555553 3322 345555555555555 3343 24555555555555554 344444444
Q ss_pred ------CCCCeEEcccccccc
Q 046279 177 ------TALASLNLSYNQLRG 191 (300)
Q Consensus 177 ------~~L~~L~l~~N~l~~ 191 (300)
++|++|++++|++++
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ---------------------
T ss_pred ccccccCcCCEEECCCCcCCc
Confidence 455555555555554
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=9.3e-17 Score=150.55 Aligned_cols=166 Identities=24% Similarity=0.219 Sum_probs=106.5
Q ss_pred CCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHH--H--------------hCccccccccccccc
Q 046279 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTI--F--------------VSMEAMKIVDEMEFG 76 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~--~--------------~~l~~L~~L~l~~n~ 76 (300)
+++|++|++++|++++ +|.. +++|++|++++|.++ .+|... + ..+++|+.|++++|.
T Consensus 120 l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 4455555555555544 2221 245555555555554 333210 0 223666777777777
Q ss_pred ccccCCc-eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 046279 77 LQYIGGF-YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155 (300)
Q Consensus 77 l~~l~~~-~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 155 (300)
+..++.. ..+..+.+..+.+.. ....+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|
T Consensus 193 l~~l~~~~~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L 263 (622)
T 3g06_A 193 LASLPTLPSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGL 263 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred CCCCCCccchhhEEECcCCcccc-cCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccC
Confidence 7655432 123333333333221 11235788899999998885 45 45688999999999988 5565 56889
Q ss_pred CEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 156 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+.|++++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99999999998 6788899999999999999999877664
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=2e-16 Score=148.23 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=37.7
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccC
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG 81 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~ 81 (300)
.+|..+. ++|++|+|++|.++. +|. .+++|++|+|++|.++ .+|. .+++|+.|++++|.+..++
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSC-CCC-----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCC
T ss_pred ccChhhC--CCCcEEEecCCCCCC-CCC-----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCC
Confidence 4555443 567777777777664 333 2456666666666666 5553 4556666666666655443
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=9.7e-18 Score=147.18 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=134.6
Q ss_pred ccc-hhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcE-EEcccCCCcccCcHHHHhCcccccccccccccccccCC
Q 046279 5 TFP-CWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRI-IDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGG 82 (300)
Q Consensus 5 ~ip-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~ 82 (300)
.|| .+|+++++|++|+|++|.+.+.++... +.++++++. +.++.|+++ .++.+.|..+++|+.|++++|++..++.
T Consensus 44 ~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EECTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CcCHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcccCCccc-ccCchhhhhccccccccccccccccCCc
Confidence 345 579999999999999999977665432 267887765 677789998 7776779999999999999999987765
Q ss_pred ceee-----eeEEEee----cCchhHHHHhc-ccccEEEccCCcCCcCCChhhcCCCCCCEEeCCC-CCCCCCCCccccC
Q 046279 83 FYYL-----DSVTVAM----KGQDVLLYKIL-IIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSH-NSLTGNIPASLGN 151 (300)
Q Consensus 83 ~~~l-----~~~~~~~----~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~ 151 (300)
..+. ..+.... ..+....+..+ ..++.|++++|+++. ++.......+|+++++++ |.++...++.|..
T Consensus 122 ~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence 4322 1222211 12233344444 468899999999995 444444567899999985 6777444457899
Q ss_pred CCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCCCCCCCCCC
Q 046279 152 MTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPRGNQFNTFD 203 (300)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 203 (300)
+++|+.|++++|+|+...+.. +.+|+.|.+.++.--..+|....+..+.
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChh
Confidence 999999999999999554433 4556666655544333777543343443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.1e-17 Score=152.47 Aligned_cols=161 Identities=19% Similarity=0.136 Sum_probs=126.9
Q ss_pred CccccchhhhcCCCCCEEE-ccCCcccCCCC-----CCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc
Q 046279 2 ISDTFPCWLGSLSELKILV-LRSNRFYGPLC-----KSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF 75 (300)
Q Consensus 2 l~g~ip~~~~~l~~L~~L~-Ls~n~i~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n 75 (300)
++|.+|..++.+++|+.|+ ++.|.+..... ..+.......|+.|+|++|.++ .+|. +..+++|+.|++++|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHN 473 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSS
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCcc
Confidence 4577888899999999998 66664332100 0000011235899999999999 6885 889999999999999
Q ss_pred cccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCC-CccccCCCC
Q 046279 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNI-PASLGNMTA 154 (300)
Q Consensus 76 ~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~ 154 (300)
.+..++. .+..+++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++
T Consensus 474 ~l~~lp~-----------------~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 474 RLRALPP-----------------ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp CCCCCCG-----------------GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred cccccch-----------------hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 9876653 23568999999999999996 66 8999999999999999999776 999999999
Q ss_pred CCEEeCCCCccCccCc---hhhhcCCCCCeEEc
Q 046279 155 LESLDLSFNKLHGIIP---EQLLAVTALASLNL 184 (300)
Q Consensus 155 L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~l 184 (300)
|+.|++++|.+++..| ..+..+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999997644 23456899999875
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=2.9e-16 Score=124.14 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=72.1
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCc--cccCCCCCCEEeCCCCccCccCch----hhhcCC
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPA--SLGNMTALESLDLSFNKLHGIIPE----QLLAVT 177 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~ 177 (300)
+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 677889999999998665566688999999999999997 5665 7888999999999999998 4555 488999
Q ss_pred CCCeEEccccccc
Q 046279 178 ALASLNLSYNQLR 190 (300)
Q Consensus 178 ~L~~L~l~~N~l~ 190 (300)
+|+.||+++|.+.
T Consensus 141 ~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 141 QVRVLDFQKVKLK 153 (176)
T ss_dssp TCSEETTEECCHH
T ss_pred ccceeCCCcCCHH
Confidence 9999999999876
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=4.2e-16 Score=122.50 Aligned_cols=92 Identities=22% Similarity=0.214 Sum_probs=82.4
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEE
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 183 (300)
.++|++|+|++|.+++..|..|..+++|++|++++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35678899999999988888999999999999999999977777789999999999999999977777899999999999
Q ss_pred cccccccccCCC
Q 046279 184 LSYNQLRGRIPR 195 (300)
Q Consensus 184 l~~N~l~~~~p~ 195 (300)
+++|++++.++.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999987764
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.1e-16 Score=152.97 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcc--------cCcHHHHhCcccccccccccccccccCCcee
Q 046279 14 SELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTG--------SLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY 85 (300)
Q Consensus 14 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 85 (300)
+.++.|+|.+|.+... +... |+.++|+.|.|.+ .++...+..+..|+.|++++|.+..++...
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~- 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI- 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-
T ss_pred CccceEEeeCCCCCcc-hhhH-------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-
Confidence 5688999999988762 3322 3344444444331 234456889999999999999988765431
Q ss_pred eeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCcc
Q 046279 86 LDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKL 165 (300)
Q Consensus 86 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 165 (300)
..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..+..+++|++|+|++|.|
T Consensus 244 ----------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 244 ----------------FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp ----------------GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred ----------------cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 24889999999999999 88999999999999999999999 7899999999999999999999
Q ss_pred CccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 166 HGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
+ .+|..|..+++|++|+|++|.|++.+|.
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred C-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 8 7788899999999999999999987774
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.5e-16 Score=121.06 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=85.8
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
|.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|.. +..
T Consensus 39 ~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~-------------------- 93 (168)
T 2ell_A 39 GKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDML-AEK-------------------- 93 (168)
T ss_dssp TBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCCCHH-HHH--------------------
T ss_pred hhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHHHHH-Hhh--------------------
Confidence 68999999999999999999999875 555 78999999999999999546643 433
Q ss_pred eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCC-ChhhcCCCCCCEEeCCCCCCCCCCC---ccccCCCCCCEEe
Q 046279 84 YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEV-PEVLGNFKSLKVLNLSHNSLTGNIP---ASLGNMTALESLD 159 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ 159 (300)
+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|+
T Consensus 94 --------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 94 --------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp --------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred --------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 455556666666666432 1556667777777777777764433 3566677777777
Q ss_pred CCCCccC
Q 046279 160 LSFNKLH 166 (300)
Q Consensus 160 Ls~N~l~ 166 (300)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 7777665
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.7e-15 Score=119.71 Aligned_cols=115 Identities=27% Similarity=0.378 Sum_probs=91.8
Q ss_pred cccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEE
Q 046279 104 LIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLN 183 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 183 (300)
.++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 45688999999999977777889999999999999999976667789999999999999999987777789999999999
Q ss_pred cccccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 184 LSYNQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 184 l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+++|.+++ +|.. .+..........+.+|++.|+|.
T Consensus 107 l~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSC-CCTT----TTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceE-eCHH----HhcCCcccCEEEecCCCeeccCc
Confidence 99999994 4432 12222233344556666666664
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=4.5e-17 Score=147.83 Aligned_cols=177 Identities=22% Similarity=0.163 Sum_probs=113.7
Q ss_pred CCCCCEEEccCCcccCC----CCCCCCCCCCCCCcEEEcccCCCccc----CcHHHHhCcccccccccccccccc-----
Q 046279 13 LSELKILVLRSNRFYGP----LCKSNSTFPFQALRIIDLSHNEFTGS----LPRTIFVSMEAMKIVDEMEFGLQY----- 79 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----lp~~~~~~l~~L~~L~l~~n~l~~----- 79 (300)
+++|++|++++|.+++. ++..+ ..+++|++|++++|.+.+. +...++..+++|+.|++++|.+..
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 55777777777777653 23333 4467777777777776622 122323356777777777776654
Q ss_pred cCC----ceeeeeEEEeecCchhH---HHH-----hcccccEEEccCCcCCcC----CChhhcCCCCCCEEeCCCCCCCC
Q 046279 80 IGG----FYYLDSVTVAMKGQDVL---LYK-----ILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLNLSHNSLTG 143 (300)
Q Consensus 80 l~~----~~~l~~~~~~~~~~~~~---~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~ 143 (300)
++. ...+..+++..+.+... .+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 211 22334444444433322 111 125888888888888765 45566677888888888888875
Q ss_pred CCCccccC-----CCCCCEEeCCCCccCc----cCchhhhcCCCCCeEEcccccccc
Q 046279 144 NIPASLGN-----MTALESLDLSFNKLHG----IIPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 144 ~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 44443332 6788888888888886 567778888888888888888874
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=1.5e-18 Score=139.95 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=122.1
Q ss_pred hhcCCCCCEEEccCCcccCCCCC------CCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCc
Q 046279 10 LGSLSELKILVLRSNRFYGPLCK------SNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGF 83 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~------~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~ 83 (300)
+.....++.++++.+.+.+..|. .+ ..+++|++|++++|.++ .+| . +..+++|+.|++++|.+..++.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~--~~l~~L~~L~ls~n~l~-~l~-~-~~~l~~L~~L~l~~n~l~~l~~- 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATL--STLKACKHLALSTNNIE-KIS-S-LSGMENLRILSLGRNLIKKIEN- 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHH--HHTTTCSEEECSEEEES-CCC-C-HHHHTTCCEEEEEEEEECSCSS-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHH--hcCCCCCEEECCCCCCc-ccc-c-cccCCCCCEEECCCCCcccccc-
Confidence 56678888889999998887765 55 67889999999999988 577 3 7888889999998888765542
Q ss_pred eeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCC-ccccCCCCCCEEeCCC
Q 046279 84 YYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIP-ASLGNMTALESLDLSF 162 (300)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~ 162 (300)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 88 ----------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 88 ----------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp ----------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ----------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 23446789999999999985 44 67888999999999999984322 4688899999999999
Q ss_pred CccCccCch----------hhhcCCCCCeEEccccccc
Q 046279 163 NKLHGIIPE----------QLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 163 N~l~~~~~~----------~l~~l~~L~~L~l~~N~l~ 190 (300)
|.+.+..|. .+..+++|+.|| +|.++
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 998766554 377889999887 67765
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=2e-15 Score=119.02 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=78.4
Q ss_pred ccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEc
Q 046279 105 IIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNL 184 (300)
Q Consensus 105 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 184 (300)
++|+.|+|++|.+++..|..|..+++|++|++++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 56788999999999888888999999999999999999665666789999999999999999766667889999999999
Q ss_pred ccccccccCC
Q 046279 185 SYNQLRGRIP 194 (300)
Q Consensus 185 ~~N~l~~~~p 194 (300)
++|++.+.++
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.7e-15 Score=116.24 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=81.4
Q ss_pred Cc-cccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccccccccc
Q 046279 2 IS-DTFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYI 80 (300)
Q Consensus 2 l~-g~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l 80 (300)
++ |.+|..++.+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|.. +..+
T Consensus 29 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~~-~~~l---------------- 87 (149)
T 2je0_A 29 SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEVL-AEKC---------------- 87 (149)
T ss_dssp CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCSCTHHH-HHHC----------------
T ss_pred CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccchHHHH-hhhC----------------
Confidence 44 68999999999999999999999885 555 78999999999999999556643 4444
Q ss_pred CCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcC-CChhhcCCCCCCEEeCCCCCCCCCCC---ccccCCCCCC
Q 046279 81 GGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGE-VPEVLGNFKSLKVLNLSHNSLTGNIP---ASLGNMTALE 156 (300)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~ 156 (300)
++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 88 ------------------------~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 88 ------------------------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp ------------------------TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred ------------------------CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4455566666666542 22556666666666666666664433 3566666666
Q ss_pred EEeCC
Q 046279 157 SLDLS 161 (300)
Q Consensus 157 ~L~Ls 161 (300)
.|+++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 66664
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.2e-17 Score=133.18 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=116.7
Q ss_pred Cccccch------hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc
Q 046279 2 ISDTFPC------WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF 75 (300)
Q Consensus 2 l~g~ip~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n 75 (300)
++|.+|. +|+.+++|++|++++|.+++ +| .+ ..+++|++|++++|.++ .+|.. +..+++|+.|++++|
T Consensus 30 l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYN 103 (198)
T ss_dssp CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEE
T ss_pred eccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCC
Confidence 4566665 99999999999999999988 55 55 78999999999999999 88864 777899999999999
Q ss_pred cccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCC-hhhcCCCCCCEEeCCCCCCCCCCCcc------
Q 046279 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVP-EVLGNFKSLKVLNLSHNSLTGNIPAS------ 148 (300)
Q Consensus 76 ~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~------ 148 (300)
.+..++ .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 104 ~l~~l~------------------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 104 QIASLS------------------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp ECCCHH------------------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred cCCcCC------------------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 886542 24568899999999999985433 47889999999999999998665542
Q ss_pred ----ccCCCCCCEEeCCCCccCc
Q 046279 149 ----LGNMTALESLDLSFNKLHG 167 (300)
Q Consensus 149 ----~~~l~~L~~L~Ls~N~l~~ 167 (300)
+..+++|+.|+ +|.++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 77899999997 777764
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.8e-16 Score=143.89 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=108.0
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCC----CCcEEEcccCCCcc----cCcHHHHhCcccccccccccccc
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQ----ALRIIDLSHNEFTG----SLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
+|..+..+++|++|+|++|.+.+..+..+. ..++ +|++|++++|.++. .++. .+..+++|+.|++++|.+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBC
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHH-HHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcC
Confidence 456666777777777777776542221110 1122 57777777777762 2343 366777777777777776
Q ss_pred cccC----------CceeeeeEEEeecCch-------hHHHHhcccccEEEccCCcCCcCCChhhc-----CCCCCCEEe
Q 046279 78 QYIG----------GFYYLDSVTVAMKGQD-------VLLYKILIIFRTLDFSSNRFHGEVPEVLG-----NFKSLKVLN 135 (300)
Q Consensus 78 ~~l~----------~~~~l~~~~~~~~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~ 135 (300)
.... ....+..+.+..+.+. ...+..+++|++|++++|.+++..+..+. ..++|++|+
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 4211 0112444444444433 22334467777777777777654333332 245777777
Q ss_pred CCCCCCCCC----CCccccCCCCCCEEeCCCCccCccCchh-----hhcCCCCCeEEcccccccc
Q 046279 136 LSHNSLTGN----IPASLGNMTALESLDLSFNKLHGIIPEQ-----LLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 136 ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-----l~~l~~L~~L~l~~N~l~~ 191 (300)
+++|.+++. ++..+..+++|++|++++|.+++..... +..+++|++|++++|.+++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 777777743 3556666777788888877776532221 2246778888888887764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.2e-15 Score=120.51 Aligned_cols=134 Identities=22% Similarity=0.179 Sum_probs=111.3
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCC-CCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQ-ALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLD 87 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~ 87 (300)
.+.++++|++|++++|.++. ++. + ..+. +|++|++++|.++ .++ . +..+++|+.|++++|.+..++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~--~~~~~~L~~L~Ls~N~l~-~~~-~-l~~l~~L~~L~Ls~N~l~~~~~----- 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-L--GATLDQFDAIDFSDNEIR-KLD-G-FPLLRRLKTLLVNNNRICRIGE----- 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-G--GGGTTCCSEEECCSSCCC-EEC-C-CCCCSSCCEEECCSSCCCEECS-----
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-h--hhcCCCCCEEECCCCCCC-ccc-c-cccCCCCCEEECCCCcccccCc-----
Confidence 45678899999999999986 443 3 3444 9999999999999 553 3 8899999999999999876642
Q ss_pred eEEEeecCchhHHHHhcccccEEEccCCcCCcCCCh--hhcCCCCCCEEeCCCCCCCCCCCcc----ccCCCCCCEEeCC
Q 046279 88 SVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPE--VLGNFKSLKVLNLSHNSLTGNIPAS----LGNMTALESLDLS 161 (300)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~----~~~l~~L~~L~Ls 161 (300)
..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++ ..|.. +..+++|+.|+++
T Consensus 82 -----------~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 82 -----------GLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp -----------CHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred -----------chhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 23466899999999999997 4555 7889999999999999998 55664 8899999999999
Q ss_pred CCccCc
Q 046279 162 FNKLHG 167 (300)
Q Consensus 162 ~N~l~~ 167 (300)
+|.+..
T Consensus 149 ~n~~~~ 154 (176)
T 1a9n_A 149 KVKLKE 154 (176)
T ss_dssp ECCHHH
T ss_pred cCCHHH
Confidence 998763
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3e-15 Score=130.11 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=132.3
Q ss_pred CCCCCEEEccCCcccC-------------------CCCCCCCCCC--------CCCCcEEEcccCCCcccCcHHHHhCcc
Q 046279 13 LSELKILVLRSNRFYG-------------------PLCKSNSTFP--------FQALRIIDLSHNEFTGSLPRTIFVSME 65 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~-------------------~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~lp~~~~~~l~ 65 (300)
+++|++|||++|++.. .+|.. .+.+ +++|+.|+|++ .++ .++...|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~-aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAY-AFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTT-TTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHH-HhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCc
Confidence 7889999999999871 11211 2256 88999999998 787 88888899999
Q ss_pred cccccccccccccccCCceeeee---EEEeecC-----------------------------------------------
Q 046279 66 AMKIVDEMEFGLQYIGGFYYLDS---VTVAMKG----------------------------------------------- 95 (300)
Q Consensus 66 ~L~~L~l~~n~l~~l~~~~~l~~---~~~~~~~----------------------------------------------- 95 (300)
+|+.+++.+|.+..++...+-+. ..+....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 99999999887655543322110 0000000
Q ss_pred --------ch----hHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCC-EEeCCC
Q 046279 96 --------QD----VLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALE-SLDLSF 162 (300)
Q Consensus 96 --------~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~Ls~ 162 (300)
+. ......+++|+.+++++|.++...+.+|.++++|+.+++++| ++...+.+|.++.+|+ .+++.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 00 011123789999999999999777789999999999999998 7756677899999999 999998
Q ss_pred CccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 163 NKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 163 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
.++...+.+|.++++|+.++++.|.++ .++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 777777899999999999999999998 5554
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=7e-14 Score=109.73 Aligned_cols=109 Identities=30% Similarity=0.375 Sum_probs=88.6
Q ss_pred ccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccc
Q 046279 107 FRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSY 186 (300)
Q Consensus 107 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 186 (300)
.+.+++++|.++ .+|..+ .++|++|++++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999999 566655 38999999999999988888999999999999999999987777889999999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 187 NQLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 187 N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
|+|++..+. .+..+.......+.+|++.|.|.
T Consensus 88 N~l~~~~~~-----~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRG-----AFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTT-----TTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHH-----HhcCCCCCCEEEeCCCCCCCCch
Confidence 999954443 23333334455666777777775
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=6.2e-16 Score=136.55 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=122.0
Q ss_pred CCCCCEEEccCCcccCCCCCCCCC---CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeE
Q 046279 13 LSELKILVLRSNRFYGPLCKSNST---FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSV 89 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~ 89 (300)
+++|+.|+|++|.++......+.. ...++|+.|+|++|.++..-...+...+.+|+.|++++|.++..+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH----
Confidence 468999999999987533222210 1236899999999999743333445567789999999998754321100
Q ss_pred EEeecCchhHHHHhcccccEEEccCCcCCcC----CChhhcCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeCC
Q 046279 90 TVAMKGQDVLLYKILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDLS 161 (300)
Q Consensus 90 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls 161 (300)
........++|++|+|++|.++.. ++..+...++|++|++++|.+++. ++..+...++|++|+|+
T Consensus 147 -------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 147 -------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp -------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred -------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 000112357899999999999753 344557889999999999999743 35566778899999999
Q ss_pred CCccCcc----CchhhhcCCCCCeEEcccccccc
Q 046279 162 FNKLHGI----IPEQLLAVTALASLNLSYNQLRG 191 (300)
Q Consensus 162 ~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~ 191 (300)
+|.|++. ++..+...++|++|++++|.|+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 9999864 34456678999999999999874
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.5e-13 Score=107.01 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=87.2
Q ss_pred cEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccc
Q 046279 108 RTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 108 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 187 (300)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 6676554 89999999999999888899999999999999999999776677889999999999999
Q ss_pred cccccCCCCCCCCCCCCCcccCCcCCCCCCCCCCCC
Q 046279 188 QLRGRIPRGNQFNTFDNNSYIGNIHLCGEPLTATCS 223 (300)
Q Consensus 188 ~l~~~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~C~ 223 (300)
+|++ +|.. .+..+.......+.+|++.|.|.
T Consensus 92 ~l~~-l~~~----~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKS-IPRG----AFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCC-CCTT----TTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccce-eCHH----HhccccCCCEEEeCCCCcccccc
Confidence 9995 4432 23333334445666777777775
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=4.6e-13 Score=117.01 Aligned_cols=104 Identities=22% Similarity=0.158 Sum_probs=60.2
Q ss_pred cEEEcccC-CCcccCcHHHHhCccccccccccc-ccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcC
Q 046279 43 RIIDLSHN-EFTGSLPRTIFVSMEAMKIVDEME-FGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGE 120 (300)
Q Consensus 43 ~~L~Ls~n-~l~~~lp~~~~~~l~~L~~L~l~~-n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 120 (300)
..++++++ .++ .+|. +..+++|+.|++++ |.+..++. ..|..+++|+.|+|++|.+++.
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~----------------~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLEL----------------RDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECG----------------GGSCSCCCCSEEECCSSCCCEE
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcCh----------------hHhccccCCCEEECCCCcccee
Confidence 35688887 787 7886 56666666666664 55544432 1223355566666666666655
Q ss_pred CChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccC
Q 046279 121 VPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 121 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 166 (300)
.|..|.++++|++|+|++|+|++..+..+..++ |+.|+|++|.+.
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555566666666666666666643333343333 666666666555
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=2e-13 Score=118.56 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=127.0
Q ss_pred CCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc----cccCC------
Q 046279 13 LSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL----QYIGG------ 82 (300)
Q Consensus 13 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l----~~l~~------ 82 (300)
+++|+.|+|.+ .++......| .++++|+.|++++|.+. .++...|..+.++..+....+.. ..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF--~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAF--KGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTT--TTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHh--hcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 99999999999 7776555566 88999999999999987 77777677776666665544111 00000
Q ss_pred -------------------------------------------------ceeeeeEEE---eecCchhHHHHhcccccEE
Q 046279 83 -------------------------------------------------FYYLDSVTV---AMKGQDVLLYKILIIFRTL 110 (300)
Q Consensus 83 -------------------------------------------------~~~l~~~~~---~~~~~~~~~~~~l~~L~~L 110 (300)
...+..+.+ ....+....|..+.+|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 111222222 2345566788899999999
Q ss_pred EccCCcCCcCCChhhcCCCCCC-EEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEc
Q 046279 111 DFSSNRFHGEVPEVLGNFKSLK-VLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNL 184 (300)
Q Consensus 111 ~Ls~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 184 (300)
++++| +....+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 8777788999999999 999999 777566789999999999999999999888889999999998864
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.4e-12 Score=114.00 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHhcccccEEEccC-CcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCC
Q 046279 101 YKILIIFRTLDFSS-NRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTAL 179 (300)
Q Consensus 101 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 179 (300)
+..+.+|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 45567788888885 888877777888888888888888888877777788888888888888888866555565555 8
Q ss_pred CeEEcccccccccCC
Q 046279 180 ASLNLSYNQLRGRIP 194 (300)
Q Consensus 180 ~~L~l~~N~l~~~~p 194 (300)
+.|++++|++.+.+.
T Consensus 106 ~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 106 QELVLSGNPLHCSCA 120 (347)
T ss_dssp CEEECCSSCCCCCGG
T ss_pred eEEEeeCCCccCCCc
Confidence 888888888886654
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=1.4e-13 Score=128.59 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=34.8
Q ss_pred CCCCCEEeCCCCCCCCC-CCccccCCCCCCEEeCCCCccCcc-CchhhhcCCCCCeEEccccccc
Q 046279 128 FKSLKVLNLSHNSLTGN-IPASLGNMTALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 128 l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 55566666666665532 233345556666666666665433 2333345666666666666655
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=2.4e-13 Score=127.11 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=131.2
Q ss_pred cccchhhhcCCCCCEEEccCCcccCCCC-CCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccc--------
Q 046279 4 DTFPCWLGSLSELKILVLRSNRFYGPLC-KSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME-------- 74 (300)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~-------- 74 (300)
+.+|..+..+++|++|+|++|.+++... ..+ ..+++|++|+++ +.+.......++..+++|+.|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~--~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLI--QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH--TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH--HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 5578888999999999999999765332 112 568999999999 4444333345567889999999993
Q ss_pred ---cccccc------CCceeeeeEEEeecCchhHH---H-HhcccccEEEcc----CCcCCcC-----CChhhcCCCCCC
Q 046279 75 ---FGLQYI------GGFYYLDSVTVAMKGQDVLL---Y-KILIIFRTLDFS----SNRFHGE-----VPEVLGNFKSLK 132 (300)
Q Consensus 75 ---n~l~~l------~~~~~l~~~~~~~~~~~~~~---~-~~l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~ 132 (300)
+.++.. .....+..+.+..+.+.... + ..+++|+.|+++ .|.+++. ++..+.++++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 555321 11223444444444444332 2 348899999996 6778754 333467799999
Q ss_pred EEeCCCCC--CCCCCCcccc-CCCCCCEEeCCCCccCcc-CchhhhcCCCCCeEEccccccccc
Q 046279 133 VLNLSHNS--LTGNIPASLG-NMTALESLDLSFNKLHGI-IPEQLLAVTALASLNLSYNQLRGR 192 (300)
Q Consensus 133 ~L~ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 192 (300)
+|++++|. +++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 99998654 6644444443 488999999999999863 455567899999999999998643
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=3.1e-11 Score=107.49 Aligned_cols=153 Identities=11% Similarity=0.084 Sum_probs=74.2
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeee
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLD 87 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~ 87 (300)
.+|.++++|+.++|++|.++......| . ..+|+.+.+..+ +. .++...|.++.+|+.+++..+ +..++.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~----- 242 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQ----- 242 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECT-----
T ss_pred HHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccc-----
Confidence 355666666666666666654333333 2 356666666533 54 555555666666666666552 333322
Q ss_pred eEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCC-----CCCCccccCCCCCCEEeCCC
Q 046279 88 SVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLT-----GNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~ 162 (300)
..|.. .+|+.+.+ .+.++.....+|.++++|+.+++.+|.+. ...+..|..+++|+.+.+.+
T Consensus 243 -----------~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 243 -----------EAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp -----------TTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred -----------ccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 22222 34444444 22333333444555555555555444432 12233444455555555542
Q ss_pred CccCccCchhhhcCCCCCeEEcc
Q 046279 163 NKLHGIIPEQLLAVTALASLNLS 185 (300)
Q Consensus 163 N~l~~~~~~~l~~l~~L~~L~l~ 185 (300)
.++.....+|.++++|+.+++.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEEC
T ss_pred -ceEEEhhhhhcCCCCccEEEEC
Confidence 2443344444555555555553
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=2.3e-12 Score=120.45 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=101.0
Q ss_pred cchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccc---------ccc
Q 046279 6 FPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEM---------EFG 76 (300)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~---------~n~ 76 (300)
+|..+..+++|++|+|++|.+++.....+ ...+++|+.|++++| +.......+...+++|+.|++. .+.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~-~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHH-HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHH-HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 45555567788888888887654221110 135677888888877 4322222334457777777762 233
Q ss_pred ccc-----cC-CceeeeeEEEeecCchhH----HHHhcccccEEEcc--C----CcCCcCC-----ChhhcCCCCCCEEe
Q 046279 77 LQY-----IG-GFYYLDSVTVAMKGQDVL----LYKILIIFRTLDFS--S----NRFHGEV-----PEVLGNFKSLKVLN 135 (300)
Q Consensus 77 l~~-----l~-~~~~l~~~~~~~~~~~~~----~~~~l~~L~~L~Ls--~----n~l~~~~-----~~~~~~l~~L~~L~ 135 (300)
+.. +. ....+..+....+.+... ....+++|+.|+++ + +.+++.. +..+..+++|++|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 321 00 111233333333333322 12346778888887 3 4555221 12245667777777
Q ss_pred CCCCCCCCCCCccccC-CCCCCEEeCCCCccCccCchhh-hcCCCCCeEEccccccc
Q 046279 136 LSHNSLTGNIPASLGN-MTALESLDLSFNKLHGIIPEQL-LAVTALASLNLSYNQLR 190 (300)
Q Consensus 136 ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~l~~N~l~ 190 (300)
+++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 766 555443344443 6777777777777765544444 55777777777777774
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=5.1e-12 Score=111.45 Aligned_cols=137 Identities=24% Similarity=0.275 Sum_probs=102.4
Q ss_pred CCCCcEEEcccCCCcccCcHHHHhC-----cccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEcc
Q 046279 39 FQALRIIDLSHNEFTGSLPRTIFVS-----MEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFS 113 (300)
Q Consensus 39 l~~L~~L~Ls~n~l~~~lp~~~~~~-----l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls 113 (300)
+++|+.|+|++|.++ ......+.. .++|+.|++++|.+.... .......+.+|+.|+|+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~---------------~~~l~~~L~~L~~L~Ls 134 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAG---------------LRTLLPVFLRARKLGLQ 134 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH---------------HHHTHHHHHTEEEEECC
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHH---------------HHHHHHHHHhccHhhcC
Confidence 468999999999998 332222322 368999999998874321 11222346789999999
Q ss_pred CCcCCcCCChhh-----cCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeCCCCccCcc----CchhhhcCCCCC
Q 046279 114 SNRFHGEVPEVL-----GNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDLSFNKLHGI----IPEQLLAVTALA 180 (300)
Q Consensus 114 ~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~ 180 (300)
+|.++......+ ...++|++|++++|.++.. ++..+...++|++|+|++|.|++. ++..+...++|+
T Consensus 135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 999986544444 3468899999999999742 444557889999999999999864 356677888999
Q ss_pred eEEcccccccc
Q 046279 181 SLNLSYNQLRG 191 (300)
Q Consensus 181 ~L~l~~N~l~~ 191 (300)
+|++++|.|+.
T Consensus 215 ~L~Ls~N~i~~ 225 (372)
T 3un9_A 215 ELNVAYNGAGD 225 (372)
T ss_dssp EEECCSSCCCH
T ss_pred eEECCCCCCCH
Confidence 99999999974
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=5.6e-12 Score=117.77 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=72.2
Q ss_pred hhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccC-CCcccCcHHHHhCcccccccccccccccccC-------
Q 046279 10 LGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHN-EFTGSLPRTIFVSMEAMKIVDEMEFGLQYIG------- 81 (300)
Q Consensus 10 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~------- 81 (300)
...+++|++|+|++|.+++..+..+. ..+++|++|++++| .++......+...+++|+.|++++|.+....
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34677888888888877654433331 14678888888888 4442222344567888888888888754321
Q ss_pred --CceeeeeEEEeecC--chhH----HHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCC
Q 046279 82 --GFYYLDSVTVAMKG--QDVL----LYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLS 137 (300)
Q Consensus 82 --~~~~l~~~~~~~~~--~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls 137 (300)
....+..+.+..+. +... ....+++|+.|++++|...+.++..+..+++|++|+++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 22234444444432 2222 22346888888888772211234444444455555433
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=1.3e-09 Score=96.90 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=131.7
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCcee--
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYY-- 85 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~-- 85 (300)
.+|.+. +|+.+++.++ ++......| .+ .+|+.+++.+ .+. .++...|.++.+|+.+++.+|++..++...+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF--~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAF--FN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTT--TT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhc--CC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 467774 7999999877 555444455 44 4799999986 676 7777778999999999999888877765432
Q ss_pred --eeeEEEe--ecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 86 --LDSVTVA--MKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 86 --l~~~~~~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
+..+.+. ...+....|..+.+|+.+++..| ++.....+|.+ .+|+.+.+. +.++.....+|..+++|+.+.+.
T Consensus 203 ~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 2222222 33455667888999999999875 66566677877 799999994 55664567789999999999999
Q ss_pred CCccC-----ccCchhhhcCCCCCeEEcccccccccCCCC
Q 046279 162 FNKLH-----GIIPEQLLAVTALASLNLSYNQLRGRIPRG 196 (300)
Q Consensus 162 ~N~l~-----~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 196 (300)
+|.+. ...+..|.++++|+.+++.+ .++ .++..
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~ 317 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQG 317 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTT
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhh
Confidence 98775 45677899999999999984 466 55543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1e-09 Score=96.21 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=94.1
Q ss_pred chhhhcCCCCCEEEccCCcccC---------CCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc
Q 046279 7 PCWLGSLSELKILVLRSNRFYG---------PLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
..++..+++|+.|.+..+.... .+...+ ..+++|+.|+|++|.-. .++. + .+++|+.|++..+.+
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll--~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL--DAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH--HTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBC
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHH--hcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCC
Confidence 4456677888888886653321 011111 34678888888887422 3443 2 367888888877665
Q ss_pred cccCCceeeeeEEEeecCchhHHHHhcccccEEEccC--CcCCcC-----CChhh--cCCCCCCEEeCCCCCCCCCCCcc
Q 046279 78 QYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSS--NRFHGE-----VPEVL--GNFKSLKVLNLSHNSLTGNIPAS 148 (300)
Q Consensus 78 ~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~--n~l~~~-----~~~~~--~~l~~L~~L~ls~n~l~~~~p~~ 148 (300)
..-. ........+++|+.|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 206 ~~~~--------------l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 206 PDSV--------------VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CHHH--------------HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred ChHH--------------HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 3210 0000111367778877752 221111 11122 24678888888888776433222
Q ss_pred c---cCCCCCCEEeCCCCccCccC----chhhhcCCCCCeEEccccccc
Q 046279 149 L---GNMTALESLDLSFNKLHGII----PEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 149 ~---~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 24677888888888877542 233345678888888888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=3.1e-10 Score=99.47 Aligned_cols=167 Identities=14% Similarity=0.197 Sum_probs=97.1
Q ss_pred ccchhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHH-hCcccccccccccc--cccccC
Q 046279 5 TFPCWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIF-VSMEAMKIVDEMEF--GLQYIG 81 (300)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~-~~l~~L~~L~l~~n--~l~~l~ 81 (300)
.++..+..+|+|+.|+|++|.-. .++. + .+++|+.|++..|.+.......+. ..+++|+.|++..+ ....-.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence 35566777888888888877311 1222 2 267888888888777532222221 25778888877431 111000
Q ss_pred CceeeeeEEEeecCchhHHH-HhcccccEEEccCCcCCcCCChhhc---CCCCCCEEeCCCCCCCCC----CCccccCCC
Q 046279 82 GFYYLDSVTVAMKGQDVLLY-KILIIFRTLDFSSNRFHGEVPEVLG---NFKSLKVLNLSHNSLTGN----IPASLGNMT 153 (300)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~ls~n~l~~~----~p~~~~~l~ 153 (300)
.. ..+..... ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..++
T Consensus 238 ~~----------~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 238 DM----------NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307 (362)
T ss_dssp CG----------GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT
T ss_pred hH----------HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC
Confidence 00 00001110 2367888888888887654333332 467888888888887753 233344567
Q ss_pred CCCEEeCCCCccCccCchhhhc-CCCCCeEEccccc
Q 046279 154 ALESLDLSFNKLHGIIPEQLLA-VTALASLNLSYNQ 188 (300)
Q Consensus 154 ~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~ 188 (300)
+|+.|++++|.+++..-..+.. + ...++++.++
T Consensus 308 ~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 308 HLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8888888888877554444443 2 3556776665
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=2.5e-09 Score=89.37 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=55.4
Q ss_pred HhcccccEEEccCCcCCc--CCChhhcCCCCCCEEeCCCCCCCCCCCccccCCC--CCCEEeCCCCccCccCc-------
Q 046279 102 KILIIFRTLDFSSNRFHG--EVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMT--ALESLDLSFNKLHGIIP------- 170 (300)
Q Consensus 102 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~------- 170 (300)
..+++|+.|+|++|++++ .++..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 447788888888888876 3445666788888888888888754 2233333 78888888888776544
Q ss_pred hhhhcCCCCCeEE
Q 046279 171 EQLLAVTALASLN 183 (300)
Q Consensus 171 ~~l~~l~~L~~L~ 183 (300)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356777777766
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=3.3e-09 Score=84.04 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=55.2
Q ss_pred cccccEEEccCCcCCcC----CChhhcCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeC--CCCccCcc----C
Q 046279 104 LIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDL--SFNKLHGI----I 169 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~ 169 (300)
.++|++|+|++|.+... +...+...++|++|+|++|.|... +...+...++|++|+| ++|.|... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 45566677777766543 223344456677777777777632 3445566677788888 67777654 3
Q ss_pred chhhhcCCCCCeEEccccccc
Q 046279 170 PEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 170 ~~~l~~l~~L~~L~l~~N~l~ 190 (300)
...+...+.|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 344556677888888888764
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=2.5e-09 Score=84.82 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=48.5
Q ss_pred hcccccEEEccCCcCCcC----CChhhcCCCCCCEEeC--CCCCCCCC----CCccccCCCCCCEEeCCCCccC
Q 046279 103 ILIIFRTLDFSSNRFHGE----VPEVLGNFKSLKVLNL--SHNSLTGN----IPASLGNMTALESLDLSFNKLH 166 (300)
Q Consensus 103 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l--s~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 166 (300)
..++|++|+|++|.++.. +...+...++|++|++ ++|.|... +...+...++|++|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 356788889998888754 3455667788999999 88988743 3345556688999999999876
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=1.7e-08 Score=84.34 Aligned_cols=84 Identities=27% Similarity=0.283 Sum_probs=62.7
Q ss_pred EEccCCcCC---cCCChhhcCCCCCCEEeCCCCCCCC--CCCccccCCCCCCEEeCCCCccCccCchhhhcCC--CCCeE
Q 046279 110 LDFSSNRFH---GEVPEVLGNFKSLKVLNLSHNSLTG--NIPASLGNMTALESLDLSFNKLHGIIPEQLLAVT--ALASL 182 (300)
Q Consensus 110 L~Ls~n~l~---~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L 182 (300)
++++.|... ..++.....+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666433 1112222468999999999999997 3456677899999999999999965 3344444 89999
Q ss_pred EcccccccccCCC
Q 046279 183 NLSYNQLRGRIPR 195 (300)
Q Consensus 183 ~l~~N~l~~~~p~ 195 (300)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=9.6e-07 Score=78.23 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=90.3
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc----------
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL---------- 77 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l---------- 77 (300)
.+|.++++|+.+.+.++.. ......| .++.+|+.+++..+ ++ .++...|.++..|+.+.+..+..
T Consensus 156 ~aF~~c~~L~~i~l~~~~~-~I~~~~F--~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSME-TLHNGLF--SGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC-EECTTTT--TTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred hhhcccCCCcEEecCCccc-eeccccc--cCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeehhhcccC
Confidence 4788899999999976643 2223344 67788888888776 54 56666677777777666544221
Q ss_pred -----------cccCC-----ceeeeeEEEee-----------------------cCchhHHHHhcccccEEEccCCcCC
Q 046279 78 -----------QYIGG-----FYYLDSVTVAM-----------------------KGQDVLLYKILIIFRTLDFSSNRFH 118 (300)
Q Consensus 78 -----------~~l~~-----~~~l~~~~~~~-----------------------~~~~~~~~~~l~~L~~L~Ls~n~l~ 118 (300)
..++. ...+....... ..+....|..+.+|+.+.+..+ ++
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CC
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cc
Confidence 01110 01111111111 1112223334455555555433 33
Q ss_pred cCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEccc
Q 046279 119 GEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSY 186 (300)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 186 (300)
.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..| ++.....+|.++++|+.+++..
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 333445555666666666433 33233445555666666666554 4444445566666666665543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=1.6e-07 Score=73.13 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=66.0
Q ss_pred ccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCC-CCCCCCccccCC----CCCCEEeCCCCc-cCccCchhhhcCCC
Q 046279 105 IIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNS-LTGNIPASLGNM----TALESLDLSFNK-LHGIIPEQLLAVTA 178 (300)
Q Consensus 105 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~ 178 (300)
..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468899999999887666777889999999999985 664433445554 479999999985 88665566788999
Q ss_pred CCeEEccccc
Q 046279 179 LASLNLSYNQ 188 (300)
Q Consensus 179 L~~L~l~~N~ 188 (300)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.01 E-value=1.5e-05 Score=69.90 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=99.8
Q ss_pred hhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeee
Q 046279 9 WLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDS 88 (300)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~ 88 (300)
.+.....+..+.+....-. .....+ ....+|+.+.+..+ +. .++...|.++..|+.+.+..+ +..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f--~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~------- 255 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGF--SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIG------- 255 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTT--TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEEC-------
T ss_pred cccccccccccccccceeE-Eeeccc--ccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeC-------
Confidence 3444555666665543322 122233 55677888887655 44 555555777777777776553 33332
Q ss_pred EEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCcc
Q 046279 89 VTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGI 168 (300)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 168 (300)
...|..+.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..
T Consensus 256 ---------~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 256 ---------SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp ---------TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred ---------ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 234455677777777643 55455567788888888888888777555667888888888888754 5555
Q ss_pred CchhhhcCCCCCeEEcccc
Q 046279 169 IPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N 187 (300)
...+|.++.+|+.+.+..+
T Consensus 325 ~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 325 QVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCCCCCCTT
T ss_pred HHHHhhCCCCCCEEEECCc
Confidence 6677888888888877654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.5e-06 Score=66.30 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=30.6
Q ss_pred cccccEEEccCCc-CCcCCChhhcCC----CCCCEEeCCCCC-CCCCCCccccCCCCCCEEeCCCCc
Q 046279 104 LIIFRTLDFSSNR-FHGEVPEVLGNF----KSLKVLNLSHNS-LTGNIPASLGNMTALESLDLSFNK 164 (300)
Q Consensus 104 l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~ 164 (300)
+++|+.|+|++|. +++..-..++.+ ++|++|++++|. +++.--..+..+++|++|+++++.
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 4445555555553 443322333332 246666666653 543323344556666666666653
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.96 E-value=1.9e-05 Score=69.74 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=101.6
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeee
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLD 87 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~ 87 (300)
.+|.++.+|+.+.|.++ ++.....+| .++++|+.+++.++ ++ .++...|.++..|+.+.+..+ +..++...+..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF--~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAF--ENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTT--TTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHh--hCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeec
Confidence 46888999999999754 554344455 78899999999765 66 777777888888888776653 33332221110
Q ss_pred ----eEE--EeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCC
Q 046279 88 ----SVT--VAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLS 161 (300)
Q Consensus 88 ----~~~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 161 (300)
... .....+....|..+.+|+.+.+.++. .......|.++.+|+.+++..+ ++......|.++..|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 000 01111233456667777777776543 3244556777777777777665 332344556677777777766
Q ss_pred CCccCccCchhhhcCCCCCeEEccc
Q 046279 162 FNKLHGIIPEQLLAVTALASLNLSY 186 (300)
Q Consensus 162 ~N~l~~~~~~~l~~l~~L~~L~l~~ 186 (300)
.+... +.+.......|+.+.+..
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECT
T ss_pred CCceE--eehhhcccCCCceEEECC
Confidence 55432 122233345666666643
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=2.1e-05 Score=69.52 Aligned_cols=129 Identities=12% Similarity=0.185 Sum_probs=83.0
Q ss_pred CCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCc
Q 046279 37 FPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNR 116 (300)
Q Consensus 37 ~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 116 (300)
.+..+|+.+.+..+.. .+....|.++..|+.+.+.. .+..+ ....|.++.+|+.+++..+
T Consensus 262 ~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I----------------~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITEL----------------PESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp TTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEE----------------CTTTTTTCTTCCEEECCTT-
T ss_pred eecccccEEecccccc--eecCcccccccccccccCCC-ccccc----------------CceeecCCCCcCEEEeCCc-
Confidence 6677788888866543 45556677777887777653 33333 2334566788888888754
Q ss_pred CCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccc
Q 046279 117 FHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQL 189 (300)
Q Consensus 117 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 189 (300)
++.....+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++.++... -..+.....|+.+.+..|.+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 56555678888999999999765 55455678889999999999887643 14566677888888776654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=6e-05 Score=66.12 Aligned_cols=164 Identities=12% Similarity=0.033 Sum_probs=106.8
Q ss_pred chhhhcCCCCCEEEccCCcccCCC------------CCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCccccccccccc
Q 046279 7 PCWLGSLSELKILVLRSNRFYGPL------------CKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEME 74 (300)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~i~~~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~ 74 (300)
..+|..+.+++.+.+..+...... ...+ .....+..+.+..... .+....+.....|+.+.+..
T Consensus 151 ~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~ 226 (379)
T 4h09_A 151 DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY--PAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITS 226 (379)
T ss_dssp SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC--CTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCT
T ss_pred cchhcccccccccccccccceeecccceecccccceeccc--ccccccccccccccee--EEeecccccccccceeeecc
Confidence 456778888888888765432110 1111 2334555555544332 23333355666666665544
Q ss_pred ccccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCC
Q 046279 75 FGLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTA 154 (300)
Q Consensus 75 n~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 154 (300)
+ +..+ ....+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..+.+
T Consensus 227 ~-~~~i----------------~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 227 G-VTTL----------------GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp T-CCEE----------------CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred c-eeEE----------------ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 2 2222 2334456788899998765 66566678888999999998765 44344567889999
Q ss_pred CCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCCC
Q 046279 155 LESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIPR 195 (300)
Q Consensus 155 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 195 (300)
|+.+.+.++.++.....+|.++.+|+.+++..+ ++ .++.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 326 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQV 326 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHH
Confidence 999999999888777788999999999999755 44 4443
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=1.9e-05 Score=62.51 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=58.3
Q ss_pred cccccEEEccCCcCCcCC----ChhhcCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeCCCC---ccCcc----
Q 046279 104 LIIFRTLDFSSNRFHGEV----PEVLGNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDLSFN---KLHGI---- 168 (300)
Q Consensus 104 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N---~l~~~---- 168 (300)
-..|+.|+|++|.+.... .+.+..-+.|++|+|++|.|... +.+.+..-+.|++|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 456788888888887543 33344557788888888888743 3344556677888888765 33322
Q ss_pred CchhhhcCCCCCeEEccccccc
Q 046279 169 IPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 169 ~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+.+.+...+.|+.|+++.|.+.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 3455667788888888877653
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=3.6e-05 Score=68.02 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=108.5
Q ss_pred hhhhcCCCCCEEEccCCcccCCCCCCCC------------CCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccc
Q 046279 8 CWLGSLSELKILVLRSNRFYGPLCKSNS------------TFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEF 75 (300)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~------------~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n 75 (300)
.+|.++.+++......+...... ..+. ......+..+.+.. .+. .+....|.++..|+.+.+.++
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPAID-NVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCBSS-SCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTT
T ss_pred chhhhccccceeccccccccccc-ceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccc
Confidence 35667778888777665543211 1110 01122344444432 233 455556888888888877653
Q ss_pred cccccCCceeeeeEEEeecCchhHHHHhcccccEEEccCCcCCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCC
Q 046279 76 GLQYIGGFYYLDSVTVAMKGQDVLLYKILIIFRTLDFSSNRFHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTAL 155 (300)
Q Consensus 76 ~l~~l~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 155 (300)
. .. +....|..+.+|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus 276 ~-~~----------------I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 276 V-VS----------------IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp C-CE----------------ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred c-ce----------------ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 2 11 233455668899999996 4566566778999999999999875 553556789999999
Q ss_pred CEEeCCCCccCccCchhhhcCCCCCeEEccccccc
Q 046279 156 ESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLR 190 (300)
Q Consensus 156 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 190 (300)
+.+.+..+ ++.....+|.++++|+.+++.++...
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 99999765 66667789999999999999988654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.65 E-value=0.00011 Score=54.26 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=39.2
Q ss_pred EEeCCCCCCC-CCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccccccccCC
Q 046279 133 VLNLSHNSLT-GNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYNQLRGRIP 194 (300)
Q Consensus 133 ~L~ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 194 (300)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...++.|..+++|+.|+|++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5666666665 23444332 357777777777776666667777777888888887776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00015 Score=53.44 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=43.6
Q ss_pred CEEEccCCccc-CCCCCCCCCCCCCCCcEEEcccCCCcccCcHHHHhCcccccccccccccc
Q 046279 17 KILVLRSNRFY-GPLCKSNSTFPFQALRIIDLSHNEFTGSLPRTIFVSMEAMKIVDEMEFGL 77 (300)
Q Consensus 17 ~~L~Ls~n~i~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~lp~~~~~~l~~L~~L~l~~n~l 77 (300)
..++.+++.++ ..+|..+ .++|+.|+|++|.|+ .+|...|..+++|+.|++.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l----p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF----PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC----CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC----CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 47899999987 2467655 457999999999999 89888777777777777776655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=0.00012 Score=57.89 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=64.1
Q ss_pred hcccccEEEccCC-cCCcC----CChhhcCCCCCCEEeCCCCCCCCC----CCccccCCCCCCEEeCCCCccCcc----C
Q 046279 103 ILIIFRTLDFSSN-RFHGE----VPEVLGNFKSLKVLNLSHNSLTGN----IPASLGNMTALESLDLSFNKLHGI----I 169 (300)
Q Consensus 103 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 169 (300)
.-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|.|.+. +.+.+..-+.|++|+|++|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3577999999985 77643 345566678999999999999743 334455668899999999999865 3
Q ss_pred chhhhcCCCCCeEEcccc
Q 046279 170 PEQLLAVTALASLNLSYN 187 (300)
Q Consensus 170 ~~~l~~l~~L~~L~l~~N 187 (300)
.+.+...+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 345556678999999865
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.59 E-value=1.2 Score=25.44 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=6.7
Q ss_pred hhhhhhhhhhhHhHHH
Q 046279 252 AKLGYASGLVIGLSIG 267 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (300)
++.+++.++++.++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4444444444433333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.49 E-value=0.82 Score=26.08 Aligned_cols=19 Identities=32% Similarity=0.156 Sum_probs=8.6
Q ss_pred hhhhhhhhhHhHHHHHHHh
Q 046279 254 LGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~ 272 (300)
-+++.+++.++++.+++..
T Consensus 10 ~aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHH
Confidence 3344445444444444443
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.05 E-value=1.1 Score=25.62 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=7.6
Q ss_pred hhhhhhhhhhhHhHHHHH
Q 046279 252 AKLGYASGLVIGLSIGYM 269 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (300)
++.+++.++++.+++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALG 30 (44)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHH
Confidence 344444444444444433
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=82.33 E-value=0.69 Score=26.42 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=5.7
Q ss_pred hhhhhhhHhHHHHHH
Q 046279 256 YASGLVIGLSIGYMV 270 (300)
Q Consensus 256 ~~~~~~~~~~~~~~~ 270 (300)
++.+++.++++.+++
T Consensus 13 IA~gVVgGv~~~~ii 27 (44)
T 2ks1_B 13 IATGMVGALLLLLVV 27 (44)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHH
Confidence 333343333333333
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=78.46 E-value=2.5 Score=26.14 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=6.1
Q ss_pred hhhhhhhhHhHHHHHH
Q 046279 255 GYASGLVIGLSIGYMV 270 (300)
Q Consensus 255 ~~~~~~~~~~~~~~~~ 270 (300)
+++.++.+.++.++++
T Consensus 13 vlGg~~~lll~~glcI 28 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333344333
No 170
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.36 E-value=4.3 Score=23.05 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=4.1
Q ss_pred hhhhHhHHHHH
Q 046279 259 GLVIGLSIGYM 269 (300)
Q Consensus 259 ~~~~~~~~~~~ 269 (300)
++++.++++++
T Consensus 20 Gvll~vi~~l~ 30 (44)
T 2jwa_A 20 GILLVVVLGVV 30 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 171
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=69.67 E-value=2.6 Score=23.16 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=3.8
Q ss_pred hhhhhhhHhH
Q 046279 256 YASGLVIGLS 265 (300)
Q Consensus 256 ~~~~~~~~~~ 265 (300)
++++.+++++
T Consensus 16 iVvG~v~gv~ 25 (38)
T 2k1k_A 16 VIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eehHHHHHHH
Confidence 3334433333
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.06 E-value=21 Score=24.20 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=20.8
Q ss_pred CCcCCChhhcCCCCCCEEeCCCCCCCCCCCccccCCCCCCEEeCCC
Q 046279 117 FHGEVPEVLGNFKSLKVLNLSHNSLTGNIPASLGNMTALESLDLSF 162 (300)
Q Consensus 117 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 162 (300)
++..-..+|.++.+|+.+.+..+--. .-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 33333445555555555555443211 3334455555555555443
No 173
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.77 E-value=7.3 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=11.6
Q ss_pred cchhhhhhhhhhhhhHhHHHHHH
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMV 270 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ 270 (300)
.+..+.+++..|+++..++++++
T Consensus 11 p~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.42 E-value=3.8 Score=26.72 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q 046279 253 KLGYASGL 260 (300)
Q Consensus 253 ~~~~~~~~ 260 (300)
++++++++
T Consensus 14 v~gvi~gi 21 (79)
T 2knc_B 14 LLSVMGAI 21 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33433333
No 175
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=49.84 E-value=12 Score=20.53 Aligned_cols=10 Identities=40% Similarity=0.501 Sum_probs=3.9
Q ss_pred hhhhhhhhhh
Q 046279 253 KLGYASGLVI 262 (300)
Q Consensus 253 ~~~~~~~~~~ 262 (300)
..+++.++++
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3343344443
No 176
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.07 E-value=30 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCCCCCCccccCCCCCCEEeCCCCccCccCchhhhcCCCCCeEEcccc
Q 046279 140 SLTGNIPASLGNMTALESLDLSFNKLHGIIPEQLLAVTALASLNLSYN 187 (300)
Q Consensus 140 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 187 (300)
.++..-...|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444445567888999999998775 45466778889999998888653
No 177
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.02 E-value=14 Score=21.93 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=10.7
Q ss_pred chhhhhhhhhhhhhHhHHHHHH
Q 046279 249 WKMAKLGYASGLVIGLSIGYMV 270 (300)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~ 270 (300)
+..+.+++.+|+++..+++++.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444
No 178
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.70 E-value=44 Score=18.65 Aligned_cols=24 Identities=13% Similarity=0.071 Sum_probs=12.7
Q ss_pred cchhhhhhhhhhhhhHhHHHHHHH
Q 046279 248 DWKMAKLGYASGLVIGLSIGYMVL 271 (300)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ 271 (300)
.+..+.+++..|+++..+++++.+
T Consensus 9 p~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556555555555554
No 179
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.83 E-value=24 Score=21.81 Aligned_cols=21 Identities=14% Similarity=-0.130 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhHhHHHHHHHh
Q 046279 252 AKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (300)
+..+++..++++.+.+++.+.
T Consensus 13 vlGg~~~lll~~glcI~ccvk 33 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVR 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhhH
Confidence 344444555555555555554
No 180
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=31.89 E-value=36 Score=17.88 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=7.0
Q ss_pred hhhhhhhhHhHHHHHHH
Q 046279 255 GYASGLVIGLSIGYMVL 271 (300)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (300)
|+.++-+++.++..+.+
T Consensus 11 GIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 11 GIVVGDLVLTVLIALAV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEeHHHHHHHHHHHHHH
Confidence 44444444444333333
No 181
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.84 E-value=1.2e+02 Score=18.80 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=11.2
Q ss_pred ccccchhhhhhhhhhhhhHhHHHHHHHh
Q 046279 245 SWLDWKMAKLGYASGLVIGLSIGYMVLS 272 (300)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (300)
..+.+...-++-.+..+|.++++.+++.
T Consensus 10 F~YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 10 FYYDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHheecchhhHHHHHHHHHHHHH
Confidence 3344544444433333333344444433
Done!