BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046281
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 229 bits (583), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 123/133 (92%)
Query: 1 MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
MAN++SGMAVHD+CKL+FLELKAKR++RFIV+KIEEK +QV VEK+G+P ++YE+F A L
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 61 PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
PADECRYA+YDFDF T ENCQKSKIFF+AW PD +++RSKM+YASSKDRF+RELDG+QVE
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 121 LQATDPSEMSLDI 133
LQATDP+EM LD+
Sbjct: 121 LQATDPTEMDLDV 133
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65
SG+AV D+C KF ELK +R++ FK+ +V VE +G PN +YEDF + LP +C
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 66 RYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATD 125
RYA++D++F D Q++KI F+ W+PD++ I+SKM+Y S+KD +++L G+QVE+QATD
Sbjct: 61 RYAIFDYEFQVD-GGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 126 PSEMSLD 132
+E+S D
Sbjct: 120 AAEISED 126
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 7 GMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECR 66
G+AV D+C KF ELK +R++ FK+ +V VE +G PN +YEDF + LP +CR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 67 YAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDP 126
YA++D++F D Q++KI F+ W+PD++ I+SKM+Y S+KD +++L G+QVE+QATD
Sbjct: 62 YAIFDYEFQVD-GGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 127 SEMSLD 132
+E+S D
Sbjct: 121 AEISED 126
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Query: 4 SSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPAD 63
S SG+AV DE F +LK + Y+FI+F + + ++ V++ + SY+ F LP +
Sbjct: 2 SRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKET-STDPSYDAFLEKLPEN 60
Query: 64 ECRYAVYDFDFTTDEN-CQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQ 122
+C YA+YDF++ + N ++SKI F WSPDT+ +RSKM+YASSKD RR L+GV ++Q
Sbjct: 61 DCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQ 120
Query: 123 ATDPSEMSLD 132
TD SE+S D
Sbjct: 121 GTDFSEVSYD 130
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 4 SSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPAD 63
S SG+ V EC F ELK +S R++VFK+ + ++ VEK ++ ++ F LP
Sbjct: 2 SFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEK 60
Query: 64 ECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQA 123
+CRYA+YDF+F E ++KI F++WSPD + I+SKM+Y+SSKD RR G+ ++QA
Sbjct: 61 DCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQA 119
Query: 124 TDPSEMS 130
TD SE++
Sbjct: 120 TDFSEVA 126
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 78/127 (61%), Gaps = 14/127 (11%)
Query: 5 SSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADE 64
+SGM V + C +F ELK +++ ++IVFKIE ++ VEK G+ N ++F +LPA++
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGKGNA--DEFRGALPAND 78
Query: 65 CRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGV-QVELQA 123
CR+ VYD +KI FV W PD + ++ +M YASSKD ++LDG V L+A
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEA 129
Query: 124 TDPSEMS 130
+ +++
Sbjct: 130 HEMGDLA 136
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 1 MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNE--SYEDFTA 58
+ + SG+ V DEC +F LK K ++I++KIE ++++ V+ L E S ++
Sbjct: 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIE-NLEKIVVDVLEHDMELTSLDNIIM 61
Query: 59 ----SLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRREL 114
+L ECRY + D T E + +I+F+ WSP S+ + KMLYA+SK+ R++
Sbjct: 62 RIKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKI 121
Query: 115 DGVQVELQAT 124
+G+ L+ T
Sbjct: 122 NGIFKSLEIT 131
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 19/147 (12%)
Query: 2 ANSSSGMAVHDECKLKFLELKA---------KRSYRFIVF--------KIEEKIQQVTVE 44
NS+SG+ V DE F ++K K+ + ++F I E+ +++ V
Sbjct: 8 GNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVG 67
Query: 45 KLGEP-NESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLY 103
+G + ++ F LP +CRYA+YD F T E+ +K ++ F W+P+ + ++SKM+Y
Sbjct: 68 DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIY 126
Query: 104 ASSKDRFRRELDGVQVELQATDPSEMS 130
ASSKD +++ G++ E QA P +++
Sbjct: 127 ASSKDAIKKKFQGIKHECQANGPEDLN 153
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 81/138 (58%), Gaps = 19/138 (13%)
Query: 5 SSGMAVHDECKLKFLELKAKRSY---------RFIVFKIEEKIQQVTVEK-----LGEPN 50
+SG+AV D F ++K ++S + ++F + E + + +E+ +G+
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 51 ESYED----FTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASS 106
++ +D F LP +CRYA+YD + T E+ +K + F+ W+P+++ ++SKM+YASS
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFRRELDGVQVELQAT 124
KD +++L G++ ELQA
Sbjct: 121 KDAIKKKLTGIKHELQAN 138
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65
SG++V DEC +L+ K+S R+++ I ++ + + V+ +GE +++ F ++ +
Sbjct: 12 SGVSVADECVTALNDLRHKKS-RYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVP 69
Query: 66 RYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATD 125
YA +DF++TT++ + K+ ++W+PD+ R+KMLY+SS+D G Q +QA D
Sbjct: 70 CYAAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQAND 127
Query: 126 PSEM 129
S +
Sbjct: 128 ASGL 131
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 81/138 (58%), Gaps = 19/138 (13%)
Query: 5 SSGMAVHDECKLKFLELKAKRSY---------RFIVFKIEEKIQQVTVEK-----LGEPN 50
+SG+ V+DE F ++K ++S + ++F + + +Q+ VE+ +G+
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 51 ESYED----FTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASS 106
++ ED F LP ++CRYA+YD + T E+ +K + F+ W+P+++ ++SKM+YASS
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 107 KDRFRRELDGVQVELQAT 124
KD +++ G++ E Q
Sbjct: 121 KDAIKKKFTGIKHEWQVN 138
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65
SG+ + + + +L+ K+S R+++ I +++ V ++GE + +Y D ++
Sbjct: 4 SGVTLEESVRGAIDDLRMKKS-RYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKP 62
Query: 66 RYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATD 125
Y +DF++ D ++ K+ + W PDT+R R KM+Y++S+D +G + +QA D
Sbjct: 63 CYVAFDFEYN-DAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQAND 120
Query: 126 PSEM 129
S +
Sbjct: 121 ESGL 124
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 25 RSYRFIVFKIEEKIQQVTVEKLGEPNESYE-DFTA-SLPADECRYAVYDFDFTTDENCQK 82
R+ ++ + KI + +Q+ V P++S+E D+ + LP E + Y +N Q
Sbjct: 21 RNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQG 80
Query: 83 SKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
+ F+AWSPD S +R KMLYA+++ ++E G ++
Sbjct: 81 YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIK 118
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 8 MAVHDECKLKFLELKAK-RSYRFI--VFKIEEKIQQVTVEKLGEPNESYEDFTASLP--- 61
M +H +LK KA+ S R I V + E+ + + E +G ++ Y+ A LP
Sbjct: 2 MGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYD--RAVLPLLD 59
Query: 62 ADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
A + Y +Y D +N Q + F+AWSPD S +R KMLYA+++ ++E G ++
Sbjct: 60 AQQPCYLLYRLD---SQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIK 115
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPAD-- 63
SG+ V+D C +F +K +++ +I+F I+ ++ + G + + + S+ +
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKG-ASTTLTELVQSIDKNNE 61
Query: 64 -ECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV 119
+C Y V+D SKI F ++ ++S R +M YASSK ++++GV V
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 109
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 6 SGMAVHDECKLKFLELKAKRS-YRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPAD- 63
SG+ V+D C +F +K +++ +I+F I+ + + K + + + S+ +
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIHSK--GASTTLTELVQSIDKNN 62
Query: 64 --ECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV 119
+C Y V+D SKI F ++ ++S R +M YASSK ++++GV V
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 111
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 25 RSYRF--------IVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTT 76
R +RF I+ K+++ Q V +E+ + N S E+ LP + R+ VY + +
Sbjct: 15 RKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKYVH 73
Query: 77 DENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV-ELQATD 125
D+ + F+ SP + +M+YA SK+R + + +V E++ TD
Sbjct: 74 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 25 RSYRF--------IVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTT 76
R +RF I+ K+++ Q V +E + N S E+ LP + R+ VY + +
Sbjct: 25 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 83
Query: 77 DENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV-ELQATD 125
D+ + F+ SP + +M+YA SK+R + + +V E++ TD
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 25 RSYRF--------IVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTT 76
R +RF I+ K+++ Q V +E + N S E+ LP + R+ VY + +
Sbjct: 31 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVH 89
Query: 77 DENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV-ELQATD 125
D+ + F+ SP + +M+YA SK+R + + +V E++ TD
Sbjct: 90 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 19 LELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDE 78
LE +K+ ++ +I+ I+ T+ N D +P D RY + + + +
Sbjct: 32 LEKLSKKQLNYVQLEID--IKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 89
Query: 79 NCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQ 122
+ +S +F + T IR +MLY+S K L+ V+ +LQ
Sbjct: 90 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPL---LEIVERQLQ 130
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 19 LELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDE 78
LE +K+ ++ +I+ I+ T+ N D +P D RY + + + +
Sbjct: 37 LEKLSKKQLNYVQLEID--IKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 94
Query: 79 NCQKSKIFFVAWSPDTSRIRSKMLYASSK 107
+ +S +F + T IR +MLY+S K
Sbjct: 95 DYLESVVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 19 LELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDE 78
LE +K+ ++ +I+ I+ T+ N D +P D RY + + + +
Sbjct: 16 LEKLSKKQLNYVQLEID--IKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 73
Query: 79 NCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQ 122
+ +S +F + T IR +MLY+S K L+ V+ +LQ
Sbjct: 74 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPL---LEIVERQLQ 114
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 25 RSYRF--------IVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTT 76
R +RF I+ KI++ + V +++ E S ++ LP + R+ VY + +
Sbjct: 25 RKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQH 83
Query: 77 DENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRF 110
D+ + F+ SP + +M+YA SK++
Sbjct: 84 DDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 117
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 8 MAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRY 67
M + E + +LK K +I K++ +++ T+E + + +P D RY
Sbjct: 2 MPLQPEAQRALQQLKQK-MVNYIQMKLD--LERETIELVHTEPTDVAQLPSRVPRDAARY 58
Query: 68 AVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQ 118
+ + T + + +S +F + I+ +MLY+S K R LD V+
Sbjct: 59 HFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRL---LDSVE 106
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 49 PNESYEDFTASLPADECRYAVYDFDFTTD------ENCQKSKIFFVAWSPDTSRIRSKML 102
P ES +D A P + V F F D + I W +
Sbjct: 209 PGESTKDHPAPFPLELAERLVRXFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPR 268
Query: 103 YAS-SKDRFRRELDGVQVEL--QATDP 126
YA +K+RF RE+ G +E+ AT P
Sbjct: 269 YAQLAKERFAREVPGFSLEVLDGATHP 295
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 88 VAWSPDTSRIRS---KMLYASSKDRFRRELDGVQVELQ 122
+ + DTS + K+++A++KD F R L+GV EL
Sbjct: 137 ITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELH 174
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIK|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIL|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
Length = 335
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 43 VEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAW 90
+E G P Y+ T +LPA CR + +D D + ++ V W
Sbjct: 201 LETFGVPLIGYQ--TKALPAFFCRTSPFDVSIRLDSASEIARAMVVKW 246
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
Length = 335
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 43 VEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAW 90
+E G P Y+ T +LPA CR + +D D + ++ V W
Sbjct: 201 LETFGVPLIGYQ--TKALPAFFCRTSPFDVSIRLDSASEIARAMVVKW 246
>pdb|3IAI|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Tumor-Associated Human Carbonic Anhydrase Ix
pdb|3IAI|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Tumor-Associated Human Carbonic Anhydrase Ix
pdb|3IAI|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Tumor-Associated Human Carbonic Anhydrase Ix
pdb|3IAI|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Tumor-Associated Human Carbonic Anhydrase Ix
Length = 257
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 55 DFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRREL 114
D +A LP+D RY Y+ TT C + I+ V T + +K L+ S +
Sbjct: 178 DISALLPSDFSRYFQYEGSLTTPP-CAQGVIWTV--FNQTVMLSAKQLHTLSDTLWGPGD 234
Query: 115 DGVQVELQATDP 126
+Q+ +AT P
Sbjct: 235 SRLQLNFRATQP 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,597,476
Number of Sequences: 62578
Number of extensions: 128443
Number of successful extensions: 312
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 33
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)