Query 046281
Match_columns 133
No_of_seqs 132 out of 1036
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 1.9E-46 4.2E-51 259.2 14.7 130 3-132 5-134 (141)
2 cd00013 ADF Actin depolymerisa 100.0 1.4E-39 3E-44 222.2 14.1 126 6-132 1-126 (132)
3 KOG1735 Actin depolymerizing f 100.0 3.4E-40 7.4E-45 225.4 9.8 129 4-132 1-134 (146)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 8.8E-38 1.9E-42 212.1 11.8 120 12-132 1-120 (127)
5 smart00102 ADF Actin depolymer 100.0 7.1E-37 1.5E-41 208.0 13.1 120 12-132 1-120 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 3.8E-37 8.2E-42 207.5 8.3 114 4-129 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 6.4E-27 1.4E-31 154.7 10.9 131 1-132 1-134 (143)
8 KOG1747 Protein tyrosine kinas 99.9 1.2E-25 2.5E-30 168.7 8.6 121 1-131 1-128 (342)
9 KOG1747 Protein tyrosine kinas 99.9 7.4E-25 1.6E-29 164.4 10.5 125 5-132 172-304 (342)
10 KOG3655 Drebrins and related a 99.7 2.6E-16 5.7E-21 124.3 11.1 122 6-132 5-127 (484)
11 KOG2313 Stress-induced protein 43.5 34 0.00073 22.2 2.9 31 94-128 66-99 (100)
12 PF02680 DUF211: Uncharacteriz 40.6 39 0.00085 21.8 2.9 52 13-65 21-72 (95)
13 KOG4037 Photoreceptor synaptic 37.1 1.1E+02 0.0024 22.2 5.0 47 27-73 86-136 (240)
14 COG1888 Uncharacterized protei 36.3 1.1E+02 0.0024 19.6 4.4 53 12-65 22-74 (97)
15 COG3905 Predicted transcriptio 34.0 36 0.00077 21.4 1.9 21 4-24 3-23 (83)
16 PF11341 DUF3143: Protein of u 30.8 49 0.0011 19.6 2.0 29 86-114 31-60 (63)
17 PF03400 DDE_Tnp_IS1: IS1 tran 29.7 1.1E+02 0.0025 20.7 4.0 45 23-67 16-61 (131)
18 PF12663 DUF3788: Protein of u 27.2 86 0.0019 21.2 3.1 29 9-37 91-119 (133)
19 PF10747 DUF2522: Protein of u 26.0 96 0.0021 21.5 3.1 39 40-86 96-135 (142)
20 KOG0444 Cytoskeletal regulator 25.2 1.6E+02 0.0036 26.2 4.9 49 64-115 527-575 (1255)
21 COG1761 RPB11 DNA-directed RNA 25.1 2E+02 0.0043 18.6 5.9 56 39-99 15-71 (99)
22 PF03306 AAL_decarboxy: Alpha- 24.9 2.9E+02 0.0063 20.4 6.1 70 12-93 90-159 (220)
23 COG0081 RplA Ribosomal protein 24.2 2.2E+02 0.0047 21.4 4.9 30 4-37 138-169 (228)
24 KOG2130 Phosphatidylserine-spe 23.9 49 0.0011 26.3 1.5 37 6-43 192-228 (407)
25 PF11663 Toxin_YhaV: Toxin wit 23.7 1.1E+02 0.0024 21.2 3.0 31 66-106 80-111 (140)
26 cd05703 S1_Rrp5_repeat_hs12_sc 23.6 91 0.002 18.4 2.4 30 15-44 41-70 (73)
27 PRK00453 rpsF 30S ribosomal pr 22.6 1.5E+02 0.0032 19.0 3.4 29 9-37 66-96 (108)
28 KOG2792 Putative cytochrome C 21.8 76 0.0016 24.4 2.1 36 67-102 122-162 (280)
29 PF09793 AD: Anticodon-binding 21.6 1.2E+02 0.0025 19.1 2.7 25 5-29 27-52 (91)
30 COG2209 NqrE Na+-transporting 21.4 27 0.00059 24.8 -0.3 16 95-110 158-173 (198)
31 PRK09798 antitoxin MazE; Provi 21.1 2.2E+02 0.0047 17.6 4.6 54 5-64 12-66 (82)
32 PF12894 Apc4_WD40: Anaphase-p 20.6 1.1E+02 0.0023 16.8 2.1 12 82-93 11-22 (47)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=1.9e-46 Score=259.17 Aligned_cols=130 Identities=65% Similarity=1.101 Sum_probs=122.8
Q ss_pred CCCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCcc
Q 046281 3 NSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQK 82 (133)
Q Consensus 3 ~~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~ 82 (133)
|++|||+++++|.++|++|+.++.+|||+|+|+.++++|+|++++..+.+|++|++.||+++|||++|||++.+.+|+.+
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 35799999999999999999887789999999998889999887655778999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 83 SKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 83 ~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
++++||+|||++|++|.||+|||+|++|++.|+|++++|||+|.+||+++
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~ 134 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFD 134 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHH
Confidence 99999999999999999999999999999999999999999999999876
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=1.4e-39 Score=222.25 Aligned_cols=126 Identities=55% Similarity=0.970 Sum_probs=117.8
Q ss_pred cCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCccccE
Q 046281 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKI 85 (133)
Q Consensus 6 SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~~ 85 (133)
|||++++++.++|++|+.+++.+||+|+|+.++++|+++++++...++++|.+.||+++|||++||+++.+. |+.++++
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 699999999999999998767999999999988899999887544689999999999999999999998765 7889999
Q ss_pred EEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 86 FFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 86 vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
+||+|||++|++|.||+|||++.+|++.++|+++++++++.+||+++
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~ 126 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEE 126 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHH
Confidence 99999999999999999999999999999999999999999999975
No 3
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=3.4e-40 Score=225.36 Aligned_cols=129 Identities=65% Similarity=1.078 Sum_probs=121.4
Q ss_pred CCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCC---CCCceeEEEeeeeecCC--
Q 046281 4 SSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLP---ADECRYAVYDFDFTTDE-- 78 (133)
Q Consensus 4 ~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~---~~~pry~~y~~~~~~~~-- 78 (133)
|+|||.++|+|+.+|++|+.++.+|+|+|+|+.++.+|++++.|..+.+|++|...|| .++|||++|+|++++..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 5799999999999999999988899999999999889999998888999999999999 99999999999998844
Q ss_pred CCccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 79 NCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 79 ~~~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
+..+++++||.|||++||+|.||+|||||.+|++.|.|+++++||||++|++++
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~ 134 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLD 134 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHH
Confidence 346899999999999999999999999999999999999999999999999865
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=8.8e-38 Score=212.11 Aligned_cols=120 Identities=43% Similarity=0.866 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCccccEEEEEEc
Q 046281 12 DECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWS 91 (133)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~~vfI~w~ 91 (133)
|||.++|++|+.+++.+|++|+|+.++++|+|+++|+...+|++|.+.||+++|||++||+.+++. |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 789999999999977999999999998899999987667899999999999999999999999876 7789999999999
Q ss_pred CCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 92 PDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 92 Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
|++||+|+||+|||++.+|++.++|++++++++|++||+++
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~ 120 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEE 120 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHH
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHH
Confidence 99999999999999999999999999999999999999975
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=7.1e-37 Score=208.03 Aligned_cols=120 Identities=50% Similarity=0.930 Sum_probs=111.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCccccEEEEEEc
Q 046281 12 DECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWS 91 (133)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~~vfI~w~ 91 (133)
++|.++|++|+.+++.+|++|+|+.++++|+|+++|..+.+|++|.+.||+++|||++||++++++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 478999999998877899999999988899999886556789999999999999999999998765 5578999999999
Q ss_pred CCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 92 PDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 92 Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
|++|++|.||+|||++.+|++.++|++..|++++.+||+++
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~ 120 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEE 120 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHH
Confidence 99999999999999999999999999999999999999875
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=207.50 Aligned_cols=114 Identities=28% Similarity=0.592 Sum_probs=101.1
Q ss_pred CCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCC---ceeEEEeeeeecCCCC
Q 046281 4 SSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADE---CRYAVYDFDFTTDENC 80 (133)
Q Consensus 4 ~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~---pry~~y~~~~~~~~~~ 80 (133)
|+|||+++++|.++|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|++.||+++ |||++|++.
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 579999999999999999988779999999975 6899998876 568999999999987 999999873
Q ss_pred ccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeE-EEEeCCCCCC
Q 046281 81 QKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQV-ELQATDPSEM 129 (133)
Q Consensus 81 ~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~-~i~~~d~~dl 129 (133)
++++||+|||++|++|.||+|||||++|++.+.|+++ ..|+++.+||
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 4699999999999999999999999999999999853 5566666665
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.95 E-value=6.4e-27 Score=154.71 Aligned_cols=131 Identities=20% Similarity=0.380 Sum_probs=115.5
Q ss_pred CCCCCcCCccCHHHHHHHHHhhcC-C--CceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecC
Q 046281 1 MANSSSGMAVHDECKLKFLELKAK-R--SYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTD 77 (133)
Q Consensus 1 ~~~~~SGi~is~e~~~a~~~l~~~-~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~ 77 (133)
|++...-.+|+++..+.+++|+.. + +..+++++|+++...|+++..--...+.+++.+.||+.+|||++|.|+++++
T Consensus 1 MS~~~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~ 80 (143)
T KOG1736|consen 1 MSNSLVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTD 80 (143)
T ss_pred CCcceeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECccccc
Confidence 444444468999999999999765 2 4789999999998899998432236788899999999999999999999999
Q ss_pred CCCccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 78 ENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 78 ~~~~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
||+..++++||||.|.+|+..++|+||++|+-+.+.. ++++.+++++-+|++.+
T Consensus 81 DGr~stPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e 134 (143)
T KOG1736|consen 81 DGRVSTPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEE 134 (143)
T ss_pred CCcccccEEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHH
Confidence 9999999999999999999999999999999999988 78999999999999865
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.93 E-value=1.2e-25 Score=168.65 Aligned_cols=121 Identities=31% Similarity=0.569 Sum_probs=102.5
Q ss_pred CCCCCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCC----CCChHHHHhcC-CCCCceeEEEeeeee
Q 046281 1 MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEP----NESYEDFTASL-PADECRYAVYDFDFT 75 (133)
Q Consensus 1 ~~~~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~----~~~~~~~~~~l-~~~~pry~~y~~~~~ 75 (133)
|+ .++||..++++.+.|++-+.++ .|.+.+.|++ +++++..+.+. ..+|+.++..| .+.+|||++||.+.
T Consensus 1 MS-~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds- 75 (342)
T KOG1747|consen 1 MS-HQTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS- 75 (342)
T ss_pred CC-cccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC-
Confidence 54 8999999999999999999886 8888888877 57888766443 45677777664 57899999999873
Q ss_pred cCCCCccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCe--eEEEEeCCCCCCcc
Q 046281 76 TDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGV--QVELQATDPSEMSL 131 (133)
Q Consensus 76 ~~~~~~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~--~~~i~~~d~~dl~~ 131 (133)
...+|+||.|+||+||||+|||||||+++|+++++|. ..+..+++++||+.
T Consensus 76 -----~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~ 128 (342)
T KOG1747|consen 76 -----KNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTL 128 (342)
T ss_pred -----CCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhh
Confidence 2349999999999999999999999999999999864 56899999999985
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.92 E-value=7.4e-25 Score=164.35 Aligned_cols=125 Identities=20% Similarity=0.410 Sum_probs=110.6
Q ss_pred CcCC--ccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCcc
Q 046281 5 SSGM--AVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQK 82 (133)
Q Consensus 5 ~SGi--~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~ 82 (133)
.+|| ++++++.+|+++|+.++ .+||+|+||..+|.|.+..+.. ....++|...+|.+.|||.+|+|.|++ +|...
T Consensus 172 l~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~-eGD~~ 248 (342)
T KOG1747|consen 172 LQGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTH-EGDPL 248 (342)
T ss_pred ccceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEeccccc-CCCCc
Confidence 3566 67899999999999987 9999999999889999998753 578999999999999999999999885 57678
Q ss_pred ccEEEEEEcCC-CCCcchhhhhHHhHHHHHhhcC---Ce--eEEEEeCCCCCCccC
Q 046281 83 SKIFFVAWSPD-TSRIRSKMLYASSKDRFRRELD---GV--QVELQATDPSEMSLD 132 (133)
Q Consensus 83 ~~~vfI~w~Pd-~a~vk~kMlYassk~~l~~~l~---g~--~~~i~~~d~~dl~~~ 132 (133)
+.++|||.||. +|+||+||+|||||..|...+. |+ ..+||+.|.+||+++
T Consensus 249 es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~ 304 (342)
T KOG1747|consen 249 ESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEK 304 (342)
T ss_pred eeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHH
Confidence 89999999999 9999999999999998876654 44 579999999999864
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.69 E-value=2.6e-16 Score=124.33 Aligned_cols=122 Identities=16% Similarity=0.286 Sum_probs=107.5
Q ss_pred cCCccCHHHHHHHHHhhcCC-CceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCcccc
Q 046281 6 SGMAVHDECKLKFLELKAKR-SYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSK 84 (133)
Q Consensus 6 SGi~is~e~~~a~~~l~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~ 84 (133)
.+-.=..+|.++|+++..+. ...|++|+++++...+.+..++ ...+++|++.+....-.|++++.. +.++...|
T Consensus 5 ~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~K 79 (484)
T KOG3655|consen 5 NTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPK 79 (484)
T ss_pred cccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccCCcc
Confidence 33334678999999998765 4899999999877667666554 678999999999999999999986 66788999
Q ss_pred EEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281 85 IFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD 132 (133)
Q Consensus 85 ~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~ 132 (133)
+|||.||++++++-+|-.+|+.++.+++.|+|+|++|+|++.+||+.+
T Consensus 80 fvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d 127 (484)
T KOG3655|consen 80 FVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDED 127 (484)
T ss_pred eEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHH
Confidence 999999999999999999999999999999999999999999999865
No 11
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=43.54 E-value=34 Score=22.19 Aligned_cols=31 Identities=32% Similarity=0.615 Sum_probs=20.9
Q ss_pred CCCcchhhhhHHhHHHHHhhcC--Cee-EEEEeCCCCC
Q 046281 94 TSRIRSKMLYASSKDRFRRELD--GVQ-VELQATDPSE 128 (133)
Q Consensus 94 ~a~vk~kMlYassk~~l~~~l~--g~~-~~i~~~d~~d 128 (133)
+..-|.||+|. .|+.++. |+| ..|.+..|++
T Consensus 66 s~v~RHRlVy~----~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVYK----ALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHHH----HHHHHhhccceeEEEeeccCCCC
Confidence 45669999994 4555554 465 4788877765
No 12
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=40.56 E-value=39 Score=21.77 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCc
Q 046281 13 ECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65 (133)
Q Consensus 13 e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~p 65 (133)
++..++.++..-.+.+..+..++.+.+.+.+.-.|. +.+|+++.+.+.+-.+
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGD-DIDFDEIKEAIEELGG 72 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-SE-HHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-CCCHHHHHHHHHHcCC
Confidence 344444554444457888888998887776665564 7899999888765544
No 13
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.11 E-value=1.1e+02 Score=22.18 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=27.7
Q ss_pred ceEEEEEEe-CCceEEEEeecCCCC---CChHHHHhcCCCCCceeEEEeee
Q 046281 27 YRFIVFKIE-EKIQQVTVEKLGEPN---ESYEDFTASLPADECRYAVYDFD 73 (133)
Q Consensus 27 ~~~vi~~i~-~~~~~i~v~~~~~~~---~~~~~~~~~l~~~~pry~~y~~~ 73 (133)
+.+.-|+|- -+++.+..+-..++. ..+..-.+.|.++..||+=|+|.
T Consensus 86 IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 86 IDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred eeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 567777774 344444443222222 23334446788899999988875
No 14
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.25 E-value=1.1e+02 Score=19.62 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCc
Q 046281 12 DECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65 (133)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~p 65 (133)
.++...+.++..-.+.+..+..|+.+.+.+.+.-.|. +-+|+++...+.+-.+
T Consensus 22 ve~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-~ldydei~~~iE~~Gg 74 (97)
T COG1888 22 VELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-NLDYDEIEEVIEELGG 74 (97)
T ss_pred HHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-CCCHHHHHHHHHHcCC
Confidence 3455555666555568888888998776665554453 7899999888766555
No 15
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=33.97 E-value=36 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.0
Q ss_pred CCcCCccCHHHHHHHHHhhcC
Q 046281 4 SSSGMAVHDECKLKFLELKAK 24 (133)
Q Consensus 4 ~~SGi~is~e~~~a~~~l~~~ 24 (133)
++--|.++|++...+..|-..
T Consensus 3 ta~tirl~del~~rLd~lAe~ 23 (83)
T COG3905 3 TAFTIRLDDELKRRLDELAEA 23 (83)
T ss_pred cceEEecCHHHHHHHHHHHHH
Confidence 333599999999999999664
No 16
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=30.77 E-value=49 Score=19.64 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=25.1
Q ss_pred EEEEEcCCC-CCcchhhhhHHhHHHHHhhc
Q 046281 86 FFVAWSPDT-SRIRSKMLYASSKDRFRREL 114 (133)
Q Consensus 86 vfI~w~Pd~-a~vk~kMlYassk~~l~~~l 114 (133)
+.|.|.+.+ ..++...-|+-+++.+-+++
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 578888888 78888999999999998765
No 17
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=29.74 E-value=1.1e+02 Score=20.65 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=31.6
Q ss_pred cCCCceEEEEEEeCCceEEEEeecCCC-CCChHHHHhcCCCCCcee
Q 046281 23 AKRSYRFIVFKIEEKIQQVTVEKLGEP-NESYEDFTASLPADECRY 67 (133)
Q Consensus 23 ~~~~~~~vi~~i~~~~~~i~v~~~~~~-~~~~~~~~~~l~~~~pry 67 (133)
.+++..|+.+.++.+...|+--..|++ ..++..|.+.|++-++.+
T Consensus 16 ~K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 16 NKKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred cCCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 344579999999988777655444543 457888888887666544
No 18
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=27.20 E-value=86 Score=21.19 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=23.7
Q ss_pred ccCHHHHHHHHHhhcCCCceEEEEEEeCC
Q 046281 9 AVHDECKLKFLELKAKRSYRFIVFKIEEK 37 (133)
Q Consensus 9 ~is~e~~~a~~~l~~~~~~~~vi~~i~~~ 37 (133)
.+++.+++.|.+-+...+-+|+.|.|.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 57888999998887766688999988764
No 19
>PF10747 DUF2522: Protein of unknown function (DUF2522); InterPro: IPR019683 This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A [].
Probab=26.02 E-value=96 Score=21.48 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCChH-HHHhcCCCCCceeEEEeeeeecCCCCccccEE
Q 046281 40 QVTVEKLGEPNESYE-DFTASLPADECRYAVYDFDFTTDENCQKSKIF 86 (133)
Q Consensus 40 ~i~v~~~~~~~~~~~-~~~~~l~~~~pry~~y~~~~~~~~~~~~~~~v 86 (133)
.|.|..+| +.+.+ .|-+.|..-+|||...+++. .+..|+
T Consensus 96 ~i~l~~~G--s~~aet~~FevLrk~~~~FlAvd~~~------~ryGWL 135 (142)
T PF10747_consen 96 RIQLNCSG--SYDAETDFFEVLRKISPCFLAVDFEN------KRYGWL 135 (142)
T ss_pred EEEEEecC--CHHHHHHHHHHHHhCCCceEEEecCC------CcccCc
Confidence 34444444 23333 67788999999999999863 356664
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=25.18 E-value=1.6e+02 Score=26.18 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=37.4
Q ss_pred CceeEEEeeeeecCCCCccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcC
Q 046281 64 ECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELD 115 (133)
Q Consensus 64 ~pry~~y~~~~~~~~~~~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~ 115 (133)
.-||++...... .+..=.|-..||+.+.|..-.+|--|-+.-.|++-|+
T Consensus 527 aDcYiVLKT~~d---dsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD---DSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc---cccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 347999886542 2335667788999999999999888888888877774
No 21
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=25.13 E-value=2e+02 Score=18.61 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=35.4
Q ss_pred eEEEEeecCCCCCChHHHHhcC-CCCCceeEEEeeeeecCCCCccccEEEEEEcCCCCCcch
Q 046281 39 QQVTVEKLGEPNESYEDFTASL-PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRS 99 (133)
Q Consensus 39 ~~i~v~~~~~~~~~~~~~~~~l-~~~~pry~~y~~~~~~~~~~~~~~~vfI~w~Pd~a~vk~ 99 (133)
..+++.-.|+.+.=..-|.+.| .++.+-|+-|+.+|+..+ ...+-|..+.+ +.+++
T Consensus 15 n~~~i~i~gEdHTL~NlL~~~L~~d~~V~~a~Y~i~HP~~~----~~~i~Ikt~~~-~dp~~ 71 (99)
T COG1761 15 NSLELEIEGEDHTLGNLLREELLKDEDVEFAAYSIPHPLID----NPKIRIKTKGG-VDPKE 71 (99)
T ss_pred CEEEEEEecCCchHHHHHHHHHhCCCCeeEEEEeCCCCCCC----CceEEEEECCC-CCHHH
Confidence 3455554455332233444444 577889999999987543 56778888888 65554
No 22
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=24.89 E-value=2.9e+02 Score=20.43 Aligned_cols=70 Identities=14% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCccccEEEEEEc
Q 046281 12 DECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWS 91 (133)
Q Consensus 12 ~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~~vfI~w~ 91 (133)
+++.+.+.++-..+ ..+..++|+..-..|.+-..-....+|..|.+.+.. ++.|-+-+.. --+.=+|+
T Consensus 90 ~~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~-Q~~f~~~ni~----------GTlVGf~s 157 (220)
T PF03306_consen 90 EELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKN-QPEFTFENIE----------GTLVGFYS 157 (220)
T ss_dssp HHHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT---EEEEEEEE----------EEEEEEEE
T ss_pred HHHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhcc-CceEEecCcE----------EEEEEEEc
Confidence 45566666655444 446667898877777665432223456555555544 6656554433 34678999
Q ss_pred CC
Q 046281 92 PD 93 (133)
Q Consensus 92 Pd 93 (133)
|+
T Consensus 158 P~ 159 (220)
T PF03306_consen 158 PE 159 (220)
T ss_dssp -G
T ss_pred ch
Confidence 97
No 23
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=24.16 E-value=2.2e+02 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.4
Q ss_pred CCcCCc--cCHHHHHHHHHhhcCCCceEEEEEEeCC
Q 046281 4 SSSGMA--VHDECKLKFLELKAKRSYRFIVFKIEEK 37 (133)
Q Consensus 4 ~~SGi~--is~e~~~a~~~l~~~~~~~~vi~~i~~~ 37 (133)
|.+-.. +++|+..+++++|.++ +-|+.++.
T Consensus 138 MP~Pk~gTvt~Dv~~av~~~K~g~----v~~R~dk~ 169 (228)
T COG0081 138 MPNPKTGTVTDDVAKAVEELKKGT----VEFRADKA 169 (228)
T ss_pred CCCCCCCCCCcCHHHHHHHHhcCc----EEEEECCC
Confidence 455555 8999999999999985 66777764
No 24
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.89 E-value=49 Score=26.28 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.3
Q ss_pred cCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEE
Q 046281 6 SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTV 43 (133)
Q Consensus 6 SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v 43 (133)
+||.|+|....|++.|-.++ .||++|--....+-|.+
T Consensus 192 tsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 192 TSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred ceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 45678999999999999986 79999876554444444
No 25
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.72 E-value=1.1e+02 Score=21.17 Aligned_cols=31 Identities=39% Similarity=0.816 Sum_probs=21.7
Q ss_pred eeE-EEeeeeecCCCCccccEEEEEEcCCCCCcchhhhhHHh
Q 046281 66 RYA-VYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASS 106 (133)
Q Consensus 66 ry~-~y~~~~~~~~~~~~~~~vfI~w~Pd~a~vk~kMlYass 106 (133)
||= ||||+ ..+++|++.|+-|....|. |.|.
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR~---ygsk 111 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLRA---YGSK 111 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchhh---hccC
Confidence 554 46664 2569999999999877764 5553
No 26
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.62 E-value=91 Score=18.40 Aligned_cols=30 Identities=3% Similarity=0.071 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCceEEEEEEeCCceEEEEe
Q 046281 15 KLKFLELKAKRSYRFIVFKIEEKIQQVTVE 44 (133)
Q Consensus 15 ~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~ 44 (133)
.+..+.++.+...++.++.++.++..|.|.
T Consensus 41 ~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls 70 (73)
T cd05703 41 EHPEKKFPIGQALKAKVVGVDKEHKLLRLS 70 (73)
T ss_pred cCHHHhCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 344555677777889999999888888775
No 27
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=22.61 E-value=1.5e+02 Score=19.04 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=19.8
Q ss_pred ccCHHHHHHHH-HhhcCCC-ceEEEEEEeCC
Q 046281 9 AVHDECKLKFL-ELKAKRS-YRFIVFKIEEK 37 (133)
Q Consensus 9 ~is~e~~~a~~-~l~~~~~-~~~vi~~i~~~ 37 (133)
..++++.+.|+ .|+.+.. .||++++++..
T Consensus 66 ~~~~~~i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 66 EAPPAAIAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred EeCHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 45677777776 5555544 68888887764
No 28
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=21.78 E-value=76 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=22.9
Q ss_pred eEEEeeeee-cCCCCccccEEEEEE----cCCCCCcchhhh
Q 046281 67 YAVYDFDFT-TDENCQKSKIFFVAW----SPDTSRIRSKML 102 (133)
Q Consensus 67 y~~y~~~~~-~~~~~~~~~~vfI~w----~Pd~a~vk~kMl 102 (133)
|-+.+.+=. -.+..-+.+|++||+ |||-||-...++
T Consensus 122 F~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm 162 (280)
T KOG2792|consen 122 FSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKM 162 (280)
T ss_pred eEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHH
Confidence 555554310 112335789999997 999998776544
No 29
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=21.60 E-value=1.2e+02 Score=19.05 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=19.1
Q ss_pred CcCCccCHHHHHHHHHhhcCCC-ceE
Q 046281 5 SSGMAVHDECKLKFLELKAKRS-YRF 29 (133)
Q Consensus 5 ~SGi~is~e~~~a~~~l~~~~~-~~~ 29 (133)
.-|..+|++.+..|..|...-. ++|
T Consensus 27 ~~~~~vs~egQ~lF~~l~Kt~~dv~W 52 (91)
T PF09793_consen 27 SIGPGVSPEGQKLFDALSKTIPDVRW 52 (91)
T ss_pred hcCCCcCHHHHHHHHHHHhhCCCCEE
Confidence 4477889999999999976432 555
No 30
>COG2209 NqrE Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]
Probab=21.35 E-value=27 Score=24.76 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.1
Q ss_pred CCcchhhhhHHhHHHH
Q 046281 95 SRIRSKMLYASSKDRF 110 (133)
Q Consensus 95 a~vk~kMlYassk~~l 110 (133)
|.+|+||.||---..+
T Consensus 158 AgirEKmkYsdvP~gL 173 (198)
T COG2209 158 AGIREKMKYSDVPKGL 173 (198)
T ss_pred HhHHHHhhcccCcccc
Confidence 5899999998654443
No 31
>PRK09798 antitoxin MazE; Provisional
Probab=21.10 E-value=2.2e+02 Score=17.59 Aligned_cols=54 Identities=4% Similarity=0.102 Sum_probs=33.7
Q ss_pred CcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCC-CCChHHHHhcCCCCC
Q 046281 5 SSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEP-NESYEDFTASLPADE 64 (133)
Q Consensus 5 ~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~-~~~~~~~~~~l~~~~ 64 (133)
+-||.|+..+.+.++- ..+. -+-+.+.+ ..|++...... .-++++|++.+.++.
T Consensus 12 S~~vRIPk~~l~~l~l-~~g~---~vei~v~~--~~iiI~p~~~~~r~~l~eLla~~~~~~ 66 (82)
T PRK09798 12 SPAVRIPATLMQALNL-NIDD---EVKIDLVD--GKLIIEPVRKEPVFTLAELVNDITPEN 66 (82)
T ss_pred cceEEcCHHHHHHcCC-CCCC---EEEEEEEC--CEEEEEECCCCCCCCHHHHHhcCCCcC
Confidence 3478888777665542 2232 35666665 46777654322 247999999987664
No 32
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=20.63 E-value=1.1e+02 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.9
Q ss_pred cccEEEEEEcCC
Q 046281 82 KSKIFFVAWSPD 93 (133)
Q Consensus 82 ~~~~vfI~w~Pd 93 (133)
..++-++.|||.
T Consensus 11 ~~~v~~~~w~P~ 22 (47)
T PF12894_consen 11 PSRVSCMSWCPT 22 (47)
T ss_pred CCcEEEEEECCC
Confidence 456789999997
Done!