Query 046284
Match_columns 618
No_of_seqs 847 out of 4577
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.2E-49 2.7E-54 469.2 37.5 463 1-552 530-1008(1153)
2 PLN00113 leucine-rich repeat r 100.0 4.1E-37 8.9E-42 362.5 28.3 378 6-397 70-493 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.1E-36 4.6E-41 356.4 25.3 389 9-411 144-582 (968)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-32 5.1E-37 277.2 7.5 366 7-388 54-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.3E-32 7.2E-37 276.1 4.6 342 8-367 81-448 (873)
6 KOG0444 Cytoskeletal regulator 100.0 1.9E-33 4.1E-38 286.6 -4.9 355 10-398 12-381 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 3E-30 6.6E-35 263.3 -6.4 356 28-417 6-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-29 2.5E-34 247.5 -6.2 348 56-411 104-539 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 2.9E-30 6.3E-35 251.6 -12.4 315 56-391 150-540 (565)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-28 3E-33 262.6 -3.2 238 156-410 241-507 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-24 2.9E-29 257.1 26.0 311 23-374 582-909 (1153)
12 KOG0618 Serine/threonine phosp 99.9 3.1E-25 6.7E-30 237.1 -2.5 383 8-413 24-489 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 1.6E-21 3.4E-26 215.3 17.7 262 67-375 201-462 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 1.4E-20 3E-25 208.0 16.8 257 30-348 202-458 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 1E-18 2.2E-23 194.4 12.5 245 67-369 178-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 193.3 13.2 246 29-348 178-428 (754)
17 KOG4237 Extracellular matrix p 99.8 5.1E-21 1.1E-25 187.2 -6.2 345 6-371 68-477 (498)
18 KOG4237 Extracellular matrix p 99.6 1.9E-17 4.2E-22 162.3 -4.0 127 63-189 63-198 (498)
19 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.8E-22 144.7 -4.5 169 79-293 23-192 (264)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-16 3.1E-21 163.9 0.5 85 203-287 137-234 (319)
21 KOG0617 Ras suppressor protein 99.6 8.7E-17 1.9E-21 140.4 -4.3 149 223-391 52-202 (264)
22 cd00116 LRR_RI Leucine-rich re 99.5 3E-15 6.5E-20 154.1 2.0 14 133-146 21-34 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.6E-17 148.5 6.0 256 82-348 516-783 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.3 2.4E-12 5.2E-17 146.0 4.2 204 156-373 523-732 (889)
25 COG4886 Leucine-rich repeat (L 99.1 7.4E-11 1.6E-15 125.2 7.9 178 156-375 116-294 (394)
26 COG4886 Leucine-rich repeat (L 99.1 7.6E-11 1.6E-15 125.1 7.6 192 71-267 97-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 5.6E-12 1.2E-16 129.7 -3.1 192 158-369 77-271 (722)
28 KOG1259 Nischarin, modulator o 99.1 2.8E-11 6.1E-16 115.2 1.3 134 154-291 282-416 (490)
29 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.8E-16 126.1 -2.9 177 178-375 74-250 (722)
30 KOG3207 Beta-tubulin folding c 99.0 8.6E-11 1.9E-15 117.6 1.7 201 177-391 119-338 (505)
31 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 111.2 1.1 129 224-370 281-411 (490)
32 PF14580 LRR_9: Leucine-rich r 98.9 6.9E-10 1.5E-14 101.7 4.8 65 79-145 9-74 (175)
33 PF14580 LRR_9: Leucine-rich r 98.9 7.9E-10 1.7E-14 101.3 4.9 61 311-371 63-126 (175)
34 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.3E-15 113.5 1.3 92 249-348 245-339 (505)
35 KOG1909 Ran GTPase-activating 98.9 2.2E-10 4.7E-15 111.9 -1.1 134 227-370 157-310 (382)
36 PRK15386 type III secretion pr 98.8 2.5E-08 5.5E-13 102.3 10.0 156 223-434 48-213 (426)
37 KOG1909 Ran GTPase-activating 98.7 2.9E-09 6.3E-14 104.1 -0.6 111 271-391 154-282 (382)
38 PLN03150 hypothetical protein; 98.6 9.3E-08 2E-12 106.6 8.8 107 180-286 419-527 (623)
39 KOG0531 Protein phosphatase 1, 98.6 5.5E-09 1.2E-13 111.2 -1.2 193 87-287 93-290 (414)
40 PLN03150 hypothetical protein; 98.6 9.7E-08 2.1E-12 106.5 7.9 91 204-294 419-511 (623)
41 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.4E-13 107.8 -1.5 217 67-290 49-271 (414)
42 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.9E-12 69.3 3.9 55 158-212 3-58 (61)
43 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.7E-12 68.4 4.4 58 228-285 2-60 (61)
44 KOG4341 F-box protein containi 98.4 1.2E-08 2.7E-13 101.9 -5.5 206 176-394 213-441 (483)
45 PRK15386 type III secretion pr 98.3 3.4E-06 7.3E-11 86.9 10.3 71 89-166 52-122 (426)
46 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.2E-13 95.6 -5.2 59 331-391 309-375 (419)
47 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-08 6.3E-13 95.0 -4.9 178 89-284 185-373 (419)
48 KOG4341 F-box protein containi 98.3 2.6E-08 5.7E-13 99.6 -5.8 226 176-415 187-441 (483)
49 KOG1859 Leucine-rich repeat pr 98.2 3.1E-08 6.7E-13 105.2 -7.3 177 172-370 102-291 (1096)
50 KOG2982 Uncharacterized conser 98.2 8.3E-07 1.8E-11 85.2 2.9 66 310-375 197-266 (418)
51 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6.1E-13 105.5 -8.6 131 156-290 164-295 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 55.7 3.3 39 313-351 2-40 (44)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 55.6 3.0 39 90-129 2-40 (44)
54 KOG4579 Leucine-rich repeat (L 97.8 1.7E-06 3.6E-11 73.9 -2.8 105 252-370 29-135 (177)
55 KOG2982 Uncharacterized conser 97.7 6.8E-06 1.5E-10 79.1 0.3 185 201-397 69-267 (418)
56 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.8E-10 86.5 2.7 129 111-240 121-263 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.6 2.1E-05 4.6E-10 74.8 0.7 139 222-370 87-254 (388)
58 COG5238 RNA1 Ran GTPase-activa 97.5 2.2E-05 4.8E-10 74.7 0.1 116 227-351 185-319 (388)
59 KOG1644 U2-associated snRNP A' 97.5 0.00014 3.1E-09 66.5 5.0 83 61-145 59-150 (233)
60 KOG4579 Leucine-rich repeat (L 97.4 5.5E-06 1.2E-10 70.8 -4.4 79 68-146 54-134 (177)
61 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 64.5 6.1 80 180-261 43-124 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 5.7E-05 1.2E-09 84.4 1.4 106 178-284 121-230 (699)
63 KOG1947 Leucine rich repeat pr 97.2 5.6E-05 1.2E-09 82.3 -1.8 61 177-237 241-305 (482)
64 KOG1947 Leucine rich repeat pr 96.9 9.8E-05 2.1E-09 80.4 -2.5 169 177-346 186-373 (482)
65 KOG2739 Leucine-rich acidic nu 96.6 0.002 4.2E-08 61.7 4.1 86 309-394 62-158 (260)
66 PF13306 LRR_5: Leucine rich r 96.5 0.016 3.4E-07 50.5 8.5 114 175-294 8-122 (129)
67 PF13306 LRR_5: Leucine rich r 96.4 0.02 4.3E-07 49.8 9.1 106 19-144 2-112 (129)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0014 3E-08 62.7 1.3 83 177-261 41-127 (260)
69 KOG2123 Uncharacterized conser 95.8 0.00048 1E-08 66.1 -4.5 55 313-369 20-74 (388)
70 KOG2123 Uncharacterized conser 95.1 0.00064 1.4E-08 65.2 -6.5 98 28-141 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.0089 1.9E-07 34.3 0.3 19 337-355 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.1E-07 32.9 1.2 20 90-109 1-20 (22)
73 PF13504 LRR_7: Leucine rich r 93.7 0.036 7.9E-07 29.5 1.1 15 336-350 2-16 (17)
74 KOG4308 LRR-containing protein 92.4 0.0015 3.2E-08 70.2 -10.6 36 181-216 89-128 (478)
75 PF13504 LRR_7: Leucine rich r 92.3 0.083 1.8E-06 28.1 1.2 13 69-81 3-15 (17)
76 KOG3864 Uncharacterized conser 90.2 0.074 1.6E-06 49.2 -0.4 94 76-188 87-185 (221)
77 PF07725 LRR_3: Leucine Rich R 89.7 0.23 4.9E-06 27.6 1.4 19 90-108 1-19 (20)
78 KOG4308 LRR-containing protein 89.1 0.0037 8.1E-08 67.1 -11.3 71 170-240 106-185 (478)
79 smart00369 LRR_TYP Leucine-ric 88.5 0.37 8.1E-06 28.7 2.0 20 334-353 1-20 (26)
80 smart00370 LRR Leucine-rich re 88.5 0.37 8.1E-06 28.7 2.0 20 334-353 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 88.4 0.013 2.7E-07 55.1 -6.8 86 23-123 36-122 (326)
82 KOG3864 Uncharacterized conser 86.3 0.22 4.8E-06 46.1 0.0 77 335-411 101-187 (221)
83 smart00369 LRR_TYP Leucine-ric 85.5 0.56 1.2E-05 27.9 1.5 21 274-294 2-22 (26)
84 smart00370 LRR Leucine-rich re 85.5 0.56 1.2E-05 27.9 1.5 21 274-294 2-22 (26)
85 KOG0473 Leucine-rich repeat pr 84.7 0.033 7.2E-07 52.4 -6.1 62 310-371 63-124 (326)
86 smart00364 LRR_BAC Leucine-ric 80.7 1.1 2.4E-05 26.7 1.4 17 68-84 3-19 (26)
87 smart00364 LRR_BAC Leucine-ric 78.6 1.4 3E-05 26.3 1.4 18 335-352 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 73.2 2.8 6E-05 25.1 1.7 17 88-104 1-17 (26)
89 smart00367 LRR_CC Leucine-rich 62.7 5.4 0.00012 23.6 1.5 15 112-126 2-16 (26)
90 PF13516 LRR_6: Leucine Rich r 60.0 3.7 8E-05 23.7 0.4 12 179-190 2-13 (24)
91 KOG3763 mRNA export factor TAP 56.9 4.1 9E-05 43.7 0.5 67 153-219 215-286 (585)
92 KOG3763 mRNA export factor TAP 51.0 8 0.00017 41.6 1.5 63 310-373 216-285 (585)
93 smart00368 LRR_RI Leucine rich 44.8 18 0.0004 21.8 1.8 14 335-348 2-15 (28)
94 KOG4242 Predicted myosin-I-bin 27.8 2.9E+02 0.0064 29.6 8.3 33 337-369 415-451 (553)
95 TIGR00864 PCC polycystin catio 26.4 45 0.00098 43.3 2.6 34 11-44 1-34 (2740)
96 PF05725 FNIP: FNIP Repeat; I 25.3 1.4E+02 0.0029 20.2 3.8 34 64-97 9-42 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-49 Score=469.22 Aligned_cols=463 Identities=32% Similarity=0.572 Sum_probs=359.9
Q ss_pred CCCceeEEEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCC
Q 046284 1 GTDAIEGIFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR 80 (618)
Q Consensus 1 G~~~i~~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~ 80 (618)
||++|+||++|++..+...+.+.+|.+|++|++|+++.+.. ........++|+++..+|.+||+|+|.+|+++
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~-------~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~ 602 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW-------DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR 602 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccc-------cccccceeecCcchhhcCcccEEEEecCCCCC
Confidence 78999999999999998999999999999999999987542 01123346889999999999999999999999
Q ss_pred ccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccE
Q 046284 81 TLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTS 160 (618)
Q Consensus 81 ~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 160 (618)
.+|..|.+.+|++|+|++|+++.+|.++..+++|+.|+|++|..++.+|++..+++|++|++++|..+
T Consensus 603 ~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L------------ 670 (1153)
T PLN03210 603 CMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL------------ 670 (1153)
T ss_pred CCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred EEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc
Q 046284 161 LNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT 240 (618)
Q Consensus 161 L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 240 (618)
.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.. ..+|++|++++|.++
T Consensus 671 --------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 671 --------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred --------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence 6778888999999999999999999999866 6999999999999988887764 467899999999999
Q ss_pred cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEecc
Q 046284 241 ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMR 320 (618)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~ 320 (618)
.+|..+ .+++|++|.+.++.... ++..+..+ +.... ..+++|+.|+++
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l----------------~~~~~--------------~~~~sL~~L~Ls 786 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEK-LWERVQPL----------------TPLMT--------------MLSPSLTRLFLS 786 (1153)
T ss_pred cccccc-cccccccccccccchhh-cccccccc----------------chhhh--------------hccccchheeCC
Confidence 998765 57888888887754221 11111110 00000 023567777777
Q ss_pred CCCC-CcCCccccCCCCCCEEeCCCC-CCccCcccccCCcccceeeccccccCCcCCCCCCCccEEeccCCCCCCcCCCC
Q 046284 321 NCAV-MEIPQEIACLSSLTTLNLSGN-SFESLPASIKQLSQLRSLHLEGCKMLQSLPELPLCLESLDLTGCNMLRSLPEL 398 (618)
Q Consensus 321 ~n~l-~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~l~~c~~l~~l~~~ 398 (618)
+|.. .++|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|..++.+|..+.+|+.|+++++ .++.+|..
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~s 864 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWW 864 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-CCccChHH
Confidence 7643 347777888888888888876 466777655 6788888888888888888887788888888776 44556643
Q ss_pred ---ccccccccccccccccCCCCCCc---cccccchhhhcccCCCCCccccc------CC-ccccCCCeEEEEccccccC
Q 046284 399 ---PLCLHSLNATNCNRLQSLPEIPS---CLQELDASVLEKLSKPSPDLCEW------HP-EYRLSQPIYFRFTNCLKLD 465 (618)
Q Consensus 399 ---~~~L~~L~i~~c~~l~~l~~~p~---~L~~L~~~~~~~L~~~~~~~~~~------~~-~~~~~~~~~l~~~nC~kL~ 465 (618)
+++|+.|++.+|++++.+|..+. .|+.+++.+|.+|+......... .. ...++....+.|.||++|+
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 45677777778888887776443 34556777787776543211100 00 0011122346899999999
Q ss_pred hhhHhHHHHHHHHHHHHHhhccccchhhhhccccceEEEecCCCCCCCcccCCCCCeEE-EEcCCCCCCCCcceeEEEEE
Q 046284 466 GKANNKILADSLRMAIAASLRRGKTIDEKLSELRRSQIVLPGSKIPDWFSNQSSGSSIR-IQLPPHSFCRNLIGFAFCAV 544 (618)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sv~-~~lp~~~~~~~~~g~~~c~v 544 (618)
+.+... +......+++||.+||+||+||+.|++++ |.+|+.|++..|.||++|+|
T Consensus 945 ~~a~l~------------------------~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v 1000 (1153)
T PLN03210 945 QEALLQ------------------------QQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAV 1000 (1153)
T ss_pred chhhhc------------------------ccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEE
Confidence 766311 11123468899999999999999999998 99999999889999999999
Q ss_pred EecCCccc
Q 046284 545 LDFKQLYS 552 (618)
Q Consensus 545 ~~~~~~~~ 552 (618)
++++....
T Consensus 1001 ~~~~~~~~ 1008 (1153)
T PLN03210 1001 VDSESFFI 1008 (1153)
T ss_pred EecCcccc
Confidence 99876533
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-37 Score=362.48 Aligned_cols=378 Identities=20% Similarity=0.261 Sum_probs=222.4
Q ss_pred eEEEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCc-cCC
Q 046284 6 EGIFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT-LPS 84 (618)
Q Consensus 6 ~~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~ 84 (618)
+...||++++.+....+.+|.++++|+.|++++|.+. ..+|.+++....+|++|++++|.+.. +|.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-------------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-------------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-------------CcCChHHhccCCCCCEEECcCCccccccCc
Confidence 4567888888877777889999999999999998752 34565555333577777777776653 332
Q ss_pred CCCCCCceEEEccCCCce-eccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCC---CCCcc
Q 046284 85 NFKPKNLVALNLSCSKVE-QLWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLI---SGKVT 159 (618)
Q Consensus 85 ~~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~---~~~L~ 159 (618)
..+++|++|++++|.+. .+|..+..+++|++|+|++|.....+| .+.++++|++|++++|.....+|.. +.+|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34566777777777665 355666667777777777666444554 3556666666666666555455533 33556
Q ss_pred EEEccCCCCc-ccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC
Q 046284 160 SLNLSKSAIE-EVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA 238 (618)
Q Consensus 160 ~L~L~~n~i~-~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 238 (618)
.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666666664 455566666666666666666655666666666666666666666655566666666666666666665
Q ss_pred Cc-cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC--------
Q 046284 239 IT-ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK-------- 309 (618)
Q Consensus 239 i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~-------- 309 (618)
+. .+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+....+..+..+++|+.|+++++.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 55 445555555666666666655555555555555555555555555553333333344555555554432
Q ss_pred --------------------------CCCCCCeEeccCCCCCc-CCccccCCCCCCEEeCCCCCCc-cCcccccCCcccc
Q 046284 310 --------------------------GLAYLGHLDMRNCAVME-IPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQLR 361 (618)
Q Consensus 310 --------------------------~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 361 (618)
.+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 33445555555555443 4444555555555555555554 2333444555555
Q ss_pred eeeccccccCCcCCCC--CCCccEEeccCCCCCCcCCC
Q 046284 362 SLHLEGCKMLQSLPEL--PLCLESLDLTGCNMLRSLPE 397 (618)
Q Consensus 362 ~L~L~~~~~l~~lp~l--~~~L~~L~l~~c~~l~~l~~ 397 (618)
.|++++|+..+.+|.. .++|+.|++++|...+.+|.
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 5555555544444432 23455555555554444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-36 Score=356.44 Aligned_cols=389 Identities=22% Similarity=0.258 Sum_probs=205.8
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCC-ccCCCC-
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLPSNF- 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~- 86 (618)
.||+++|.+....+..|.++++||+|++++|.+. ..+|..+..++ +|++|++++|.+. .+|..+
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-------------~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-------------GKIPNSLTNLT-SLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCccc-------------ccCChhhhhCc-CCCeeeccCCCCcCcCChHHc
Confidence 3455555554455556666777777777666542 23344444442 5555555555543 344444
Q ss_pred CCCCceEEEccCCCcee-ccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCC---CCCccEE
Q 046284 87 KPKNLVALNLSCSKVEQ-LWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLI---SGKVTSL 161 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~---~~~L~~L 161 (618)
++++|++|++++|.+.. +|..+..+++|++|++++|.....+| .+.++++|++|++++|.....+|.. +.+|+.|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 45555555555555542 44445555555555555554333333 3444555555555554433333322 2344555
Q ss_pred EccCCCCc-ccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc
Q 046284 162 NLSKSAIE-EVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT 240 (618)
Q Consensus 162 ~L~~n~i~-~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 240 (618)
++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 55555443 33444444555555555555544444444444555555555555444444444444445555555444443
Q ss_pred -------------------------cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhh
Q 046284 241 -------------------------ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVA 295 (618)
Q Consensus 241 -------------------------~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 295 (618)
.+|..+..+++|+.|++++|.+.+.+|..+..++.|+.|++++|.++......+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 2334444455555555555555555555555555555555555555544443334
Q ss_pred ccCCCceEecCCCC---------CCCCCCeEeccCCCCCc-CCccccCCCCCCEEeCCCCCCc-cCcccccCCcccceee
Q 046284 296 YSNRLGVLYFSRCK---------GLAYLGHLDMRNCAVME-IPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLH 364 (618)
Q Consensus 296 ~~~~L~~L~l~~~~---------~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 364 (618)
.+++|+.|++++|. ..++|+.|++++|++.. +|..+..+++|+.|++++|++. .+|..+..+++|++|+
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 55556666665554 23456666666666654 5556666666677777776666 5566666666777777
Q ss_pred ccccccCCcCCCC---CCCccEEeccCCCCCCcCCCCcc---ccccccccccc
Q 046284 365 LEGCKMLQSLPEL---PLCLESLDLTGCNMLRSLPELPL---CLHSLNATNCN 411 (618)
Q Consensus 365 L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~~l~~~~~---~L~~L~i~~c~ 411 (618)
|++|...+.+|.. .++|+.|++++|...+.+|..+. +|+.|++.+++
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 7776666655532 24666777777666666665443 34444444444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-32 Score=277.17 Aligned_cols=366 Identities=21% Similarity=0.210 Sum_probs=301.0
Q ss_pred EEEeecccccccccCchhhccC--ccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCccC
Q 046284 7 GIFLDLSKIKRINLDPGAFTNM--SNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLP 83 (618)
Q Consensus 7 ~i~Ldls~~~~~~l~~~~f~~l--~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp 83 (618)
+..||.+++++-.++..++.+. +.-+.|++++|++ .++. .++..+| +|+.+++..|.++.+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl--------------~~id~~~f~nl~-nLq~v~l~~N~Lt~IP 118 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL--------------SHIDFEFFYNLP-NLQEVNLNKNELTRIP 118 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeecccccc--------------ccCcHHHHhcCC-cceeeeeccchhhhcc
Confidence 3467888887777766666665 3445599998875 3332 3445565 8999999999999999
Q ss_pred CCC-CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCC---cCCCCCC
Q 046284 84 SNF-KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLI---EFPLISG 156 (618)
Q Consensus 84 ~~~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~---~~~~~~~ 156 (618)
... ...+|+.|+|.+|.|+.+- +.++.++.|+.|||+.|. +.++| .+..-.++++|+|++|.... .-...+.
T Consensus 119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccc
Confidence 877 4566999999999999875 678889999999999986 66654 66677889999999985442 1223455
Q ss_pred CccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEec
Q 046284 157 KVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLN 235 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 235 (618)
+|..|.|+.|.|+.+|. .+.++++|+.|+|..|.+...-.-.|.++++|+.|.|..|.+...-...|..|.++++|+|.
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 89999999999999987 56779999999999998766555668999999999999999888888889999999999999
Q ss_pred CcCCccCC-ccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC-----
Q 046284 236 KTAITELP-SSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK----- 309 (618)
Q Consensus 236 ~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~----- 309 (618)
.|+++++. .++.+++.|+.|+++.|.+...-++.....++|++|+++.|+|+.+++..+..+..|+.|.++.+.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH
Confidence 99999875 478899999999999999998889999999999999999999999999999999999999999876
Q ss_pred -----CCCCCCeEeccCCCCCcC----CccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeeccccccCCcCCCC--
Q 046284 310 -----GLAYLGHLDMRNCAVMEI----PQEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHLEGCKMLQSLPEL-- 377 (618)
Q Consensus 310 -----~l~~L~~L~L~~n~l~~~----p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~l-- 377 (618)
++++|++|||+.|.+... ...+..+++|+.|++.||++..+| ..+.+++.|++|+|.+|.+-..-|+.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 889999999999998752 334667999999999999999998 67899999999999999865554542
Q ss_pred CCCccEEeccC
Q 046284 378 PLCLESLDLTG 388 (618)
Q Consensus 378 ~~~L~~L~l~~ 388 (618)
+-.|++|.+..
T Consensus 438 ~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 438 PMELKELVMNS 448 (873)
T ss_pred cchhhhhhhcc
Confidence 23566666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-32 Score=276.09 Aligned_cols=342 Identities=20% Similarity=0.203 Sum_probs=300.4
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF- 86 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~- 86 (618)
-.||+|+|++.+++...|.++++|+.+++.+|.+ ..+|...... .+|+.|++.+|.|.++.+.-
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--------------t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--------------TRIPRFGHES-GHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchh--------------hhcccccccc-cceeEEeeeccccccccHHHH
Confidence 3599999999999999999999999999999887 7778665554 58999999999999887654
Q ss_pred -CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCccc--CCCCCCCCCcEEeccCCCCCCcCCC----CCCCc
Q 046284 87 -KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSF--PSNLHFVCPVTINFSYCVNLIEFPL----ISGKV 158 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~l--p~~~~l~~L~~L~l~~~~~l~~~~~----~~~~L 158 (618)
.++.|+.|||+.|.|+.++ ..+..-.++++|+|++|. ++.+ ..|.++.+|.+|.|+.|. +..+|. .+++|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchh
Confidence 6889999999999999998 566667899999999998 4444 367788899999999985 444543 35688
Q ss_pred cEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 159 TSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 159 ~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
+.|+|..|.|..+ .-.+..+++|+.|.|..|++...-...|..+.++++|+|+.|++...-..++-++++|+.|+++.|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 9999999999888 457889999999999999988888888999999999999999988888888999999999999999
Q ss_pred CCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC-------
Q 046284 238 AITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK------- 309 (618)
Q Consensus 238 ~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~------- 309 (618)
.|..+ +++....++|++|+|+.|.+..--+..|..+..|++|++++|++..+....+..+++|++|++.++.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 99976 5667888999999999999888888899999999999999999999999999999999999999876
Q ss_pred ------CCCCCCeEeccCCCCCcCCc-cccCCCCCCEEeCCCCCCccC-cccccCCcccceeeccc
Q 046284 310 ------GLAYLGHLDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEG 367 (618)
Q Consensus 310 ------~l~~L~~L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 367 (618)
++++|+.|++.+|++..+|. .+..+++|++|||.+|.|.++ |..|..+ +|++|.+..
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 89999999999999999875 688899999999999999977 5778888 999998764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-33 Score=286.57 Aligned_cols=355 Identities=22% Similarity=0.282 Sum_probs=300.0
Q ss_pred eeccccccc-ccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-C
Q 046284 10 LDLSKIKRI-NLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-K 87 (618)
Q Consensus 10 Ldls~~~~~-~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~ 87 (618)
+|+|+|... .--|.....|++++.|++...++ .++|+.+..+ .+|+.|.+++|++.++-... .
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--------------~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--------------EQVPEELSRL-QKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhh--------------hhChHHHHHH-hhhhhhhhhhhhhHhhhhhhcc
Confidence 388888755 45577888999999999988665 7889999888 59999999999999888777 7
Q ss_pred CCCceEEEccCCCcee--ccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCCC----CCccE
Q 046284 88 PKNLVALNLSCSKVEQ--LWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLIS----GKVTS 160 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~----~~L~~ 160 (618)
++.|+.++++.|+++. +|..+-.+..|..||||+|+ +++.| .+...+++..|+|++| ++..+|..+ ..|-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhh
Confidence 9999999999999885 88999999999999999998 88888 6778889999999987 566677543 35667
Q ss_pred EEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccC-ccccchhhhCCCCCCEEEecCcCC
Q 046284 161 LNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVN-LERFPEILEKMEHLERINLNKTAI 239 (618)
Q Consensus 161 L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~l~~L~~L~L~~n~i 239 (618)
|||++|.+..+|+.+..+.+|++|+|++|.+.-.--..+-.+++|++|.+++.+. ...+|.++..+.+|+.+|++.|.+
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 8999999999999999999999999999876543333344578888999988654 357888999999999999999999
Q ss_pred ccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEec
Q 046284 240 TELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDM 319 (618)
Q Consensus 240 ~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L 319 (618)
..+|..+.++++|+.|+|++|++ +.+....+...+|+.|+++.|+++.+|..+. +++.|+.|.+
T Consensus 235 p~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt~LP~avc---------------KL~kL~kLy~ 298 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRNQLTVLPDAVC---------------KLTKLTKLYA 298 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccchhccchHHHh---------------hhHHHHHHHh
Confidence 99999999999999999999865 4455556677899999999999999999887 7888888888
Q ss_pred cCCCCCc--CCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCC---CCCCccEEeccCCCCCCc
Q 046284 320 RNCAVME--IPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPE---LPLCLESLDLTGCNMLRS 394 (618)
Q Consensus 320 ~~n~l~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---l~~~L~~L~l~~c~~l~~ 394 (618)
.+|++.- +|..++.+..|+.+..++|.+.-+|+++..|.+|+.|.|++|+. ..+|+ +.+-|+.||+.+|+.|..
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccC
Confidence 8888764 99999999999999999999999999999999999999999874 45675 567899999999999986
Q ss_pred CCCC
Q 046284 395 LPEL 398 (618)
Q Consensus 395 l~~~ 398 (618)
-|..
T Consensus 378 PPKP 381 (1255)
T KOG0444|consen 378 PPKP 381 (1255)
T ss_pred CCCc
Confidence 6643
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3e-30 Score=263.28 Aligned_cols=356 Identities=23% Similarity=0.324 Sum_probs=300.3
Q ss_pred CccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-CCCCceEEEccCCCceeccc
Q 046284 28 MSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKVEQLWE 106 (618)
Q Consensus 28 l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~ 106 (618)
++-.|-.++++|.. +...+|.....+ ..+++|.+....+..+|... .+.+|++|.+++|++.++..
T Consensus 6 LpFVrGvDfsgNDF------------sg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF------------SGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG 72 (1255)
T ss_pred cceeecccccCCcC------------CCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh
Confidence 44566778888653 336788888877 59999999999999999988 89999999999999999999
Q ss_pred cccccccCcEEeccCCCCCc--ccC-CCCCCCCCcEEeccCCCCCCcCCCCCC---CccEEEccCCCCcccCccc-cCCC
Q 046284 107 GEKNFKYLSALSFEGCKSLR--SFP-SNLHFVCPVTINFSYCVNLIEFPLISG---KVTSLNLSKSAIEEVPSSI-ECLT 179 (618)
Q Consensus 107 ~~~~l~~L~~L~Ls~~~~l~--~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~~---~L~~L~L~~n~i~~l~~~i-~~l~ 179 (618)
.+..++.|+.+++++|. ++ .+| ++..+..|..|+|+.| .+.+.|..+. ++-.|+|++|+|..||..+ -+++
T Consensus 73 ELs~Lp~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhhccc-cccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 99999999999999987 43 244 7889999999999997 5778887654 6789999999999999865 7899
Q ss_pred CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc--cCCccCCCCCCCCEEEe
Q 046284 180 DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT--ELPSSFENLPGLEELFV 257 (618)
Q Consensus 180 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L 257 (618)
.|-.|||++|+ +..+|+.+..+..|++|+|++|.....-...+..|++|+.|.+++++-+ .+|.++..+.+|..+++
T Consensus 151 DLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 99999999987 5677888999999999999999877655555667889999999998766 89999999999999999
Q ss_pred ccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCC
Q 046284 258 EDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSL 337 (618)
Q Consensus 258 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L 337 (618)
+.| .+..+|+.+.++++|+.|++++|.|+++..... ...+|++|+++.|+++.+|..+..++.|
T Consensus 230 S~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~---------------~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 230 SEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEG---------------EWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred ccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHH---------------HHhhhhhhccccchhccchHHHhhhHHH
Confidence 987 567889999999999999999999998765544 4578999999999999999999999999
Q ss_pred CEEeCCCCCCc--cCcccccCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCCcCCCCc---cccccccccc
Q 046284 338 TTLNLSGNSFE--SLPASIKQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLRSLPELP---LCLHSLNATN 409 (618)
Q Consensus 338 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~~l~~~~---~~L~~L~i~~ 409 (618)
+.|.+.+|+++ .+|.+++.+.+|+.+...+|. ++-+|+. ...|+.|.++.| .|-++|+.. +.|+.|++.+
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccC
Confidence 99999999877 899999999999999999886 6777763 346999998765 455677654 4566666666
Q ss_pred cccccCCC
Q 046284 410 CNRLQSLP 417 (618)
Q Consensus 410 c~~l~~l~ 417 (618)
.+++..-|
T Consensus 372 NpnLVMPP 379 (1255)
T KOG0444|consen 372 NPNLVMPP 379 (1255)
T ss_pred CcCccCCC
Confidence 66665443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-29 Score=247.46 Aligned_cols=348 Identities=24% Similarity=0.305 Sum_probs=254.0
Q ss_pred EEcCCCCcCCCcCceEEEeCCCCCCccCCCC-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCC
Q 046284 56 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHF 134 (618)
Q Consensus 56 ~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l 134 (618)
.++|+.+...+ +|+.|+.+.|.++.+|..+ .+..|..|+..+|++..+|+++..+.+|..+++.+|+.....|+...+
T Consensus 104 s~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m 182 (565)
T KOG0472|consen 104 SELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAM 182 (565)
T ss_pred hhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHH
Confidence 67787777775 8888888888888888877 788888888889999999888888888989999888744444466678
Q ss_pred CCCcEEeccCCCCCCcCCCCCC---CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhcc-CCCCCcEEec
Q 046284 135 VCPVTINFSYCVNLIEFPLISG---KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFC-KLRSLVDLFL 210 (618)
Q Consensus 135 ~~L~~L~l~~~~~l~~~~~~~~---~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~L 210 (618)
+.|++|+...| .+..+|+.++ +|..|+|..|+|..+| .|..+..|++|.++.|. ++.+|.... ++++|.+||+
T Consensus 183 ~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 183 KRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeec
Confidence 88888888775 5677887766 4555678889999888 78888889999988866 455665554 8899999999
Q ss_pred CCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccc-------------------------
Q 046284 211 NGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDK------------------------- 265 (618)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~------------------------- 265 (618)
..|. ....|..+..+++|++||+++|.|+.+|.+++++ .|+.|-+.||++.+.
T Consensus 260 RdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 260 RDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred cccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 9865 4567888888999999999999999999999999 899999988863210
Q ss_pred -------------cCc---ccCCCccceEEEecCcccccCCcchhhccC--CCceEecCCCC------------------
Q 046284 266 -------------LPD---NIGNLKCLFIISAVGSAISQLPSSSVAYSN--RLGVLYFSRCK------------------ 309 (618)
Q Consensus 266 -------------lp~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~~~------------------ 309 (618)
.+. ....+.+.+.|++++-+++.+|..+|.... -...++++.++
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 000 122355778888888888888888774332 25566666654
Q ss_pred ---------------CCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcC
Q 046284 310 ---------------GLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSL 374 (618)
Q Consensus 310 ---------------~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 374 (618)
.+++|..|++++|-+.++|..++.+..|+.|+++.|+|..+|..+-.+..|+.+-.++|+ ++.+
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~v 496 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSV 496 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-cccc
Confidence 566777777777777777777777777777777777777777655544444444444444 3344
Q ss_pred CC----CCCCccEEeccCCCCCCcCCCCcc---ccccccccccc
Q 046284 375 PE----LPLCLESLDLTGCNMLRSLPELPL---CLHSLNATNCN 411 (618)
Q Consensus 375 p~----l~~~L~~L~l~~c~~l~~l~~~~~---~L~~L~i~~c~ 411 (618)
+. ...+|..||+.+| .++.+|..++ +|++|.+.+.+
T Consensus 497 d~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 32 2456888888765 4556665443 45566666543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.9e-30 Score=251.61 Aligned_cols=315 Identities=22% Similarity=0.271 Sum_probs=191.9
Q ss_pred EEcCCCCcCCCcCceEEEeCCCCCCccCCCC-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCC
Q 046284 56 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHF 134 (618)
Q Consensus 56 ~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l 134 (618)
..+|++++.+. +|..|++.+|.++.+|... .++.|++||...|-++.+|..++.+.+|..|+|..|+ +..+|.|.++
T Consensus 150 ~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gc 227 (565)
T KOG0472|consen 150 SSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGC 227 (565)
T ss_pred ccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCcc
Confidence 56666666663 6777777777777776655 6777777777777777777777777777777787776 6777777777
Q ss_pred CCCcEEeccCCCCCCcCCC----CCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEec
Q 046284 135 VCPVTINFSYCVNLIEFPL----ISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFL 210 (618)
Q Consensus 135 ~~L~~L~l~~~~~l~~~~~----~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 210 (618)
..|++|.++.| .+..+|. .+.++..|||..|+++++|+.+.-+.+|.+||+++|.+ ..+|.+++++ +|+.|.+
T Consensus 228 s~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 228 SLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhh
Confidence 77777777665 3334442 34577888899999999998888888899999988764 5567778888 8888888
Q ss_pred CCccCccc--------------------------------------cch---hhhCCCCCCEEEecCcCCccCCcc----
Q 046284 211 NGCVNLER--------------------------------------FPE---ILEKMEHLERINLNKTAITELPSS---- 245 (618)
Q Consensus 211 ~~~~~~~~--------------------------------------~~~---~~~~l~~L~~L~L~~n~i~~lp~~---- 245 (618)
.||.+.+. .+. ....+.+.+.|++++-+++.+|..
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea 384 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA 384 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence 88753100 000 111233455555555555555543
Q ss_pred ----------------------CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 246 ----------------------FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 246 ----------------------l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
+..+..+++.-+..++..+-+|..+..+++|..|++++|.+.++|...+
T Consensus 385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~--------- 455 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG--------- 455 (565)
T ss_pred hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhh---------
Confidence 2222333332233333445555666777777777777777777777766
Q ss_pred ecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCccc-ccCCcccceeeccccccCCcCCC---CCC
Q 046284 304 YFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPAS-IKQLSQLRSLHLEGCKMLQSLPE---LPL 379 (618)
Q Consensus 304 ~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~---l~~ 379 (618)
.+..|+.|+++.|++..+|..+..+..|+.+-.++|++..++.. +.++.+|..||+.+|.. +.+|. -..
T Consensus 456 ------~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~Lgnmt 528 (565)
T KOG0472|consen 456 ------SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMT 528 (565)
T ss_pred ------hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhcccc
Confidence 34444555555555444444444444444444444444444422 44445555555544432 22221 123
Q ss_pred CccEEeccCCCC
Q 046284 380 CLESLDLTGCNM 391 (618)
Q Consensus 380 ~L~~L~l~~c~~ 391 (618)
+|++|+++||+.
T Consensus 529 nL~hLeL~gNpf 540 (565)
T KOG0472|consen 529 NLRHLELDGNPF 540 (565)
T ss_pred ceeEEEecCCcc
Confidence 444555555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-28 Score=262.56 Aligned_cols=238 Identities=26% Similarity=0.382 Sum_probs=175.9
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEec
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLN 235 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 235 (618)
.+|+++++++|++..+|++++.+.+|+.++..+|.+ ..+|..+....+|+.|.+..|.. +.+|...+++++|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeeh
Confidence 467777777777777777777777777777777765 55666666677777777776543 4556666777788888888
Q ss_pred CcCCccCCccCC--------------------------CCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccC
Q 046284 236 KTAITELPSSFE--------------------------NLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQL 289 (618)
Q Consensus 236 ~n~i~~lp~~l~--------------------------~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~ 289 (618)
.|.+..+|..+- ..+.|+.|++.+|.+.+..-+.+.+.++|+.|++++|++..+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 888777765321 123466666666666666656667777777777777777777
Q ss_pred CcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccc
Q 046284 290 PSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 290 ~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 369 (618)
|...+ .+++.|++|+||+|+++.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|.
T Consensus 399 pas~~--------------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 399 PASKL--------------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred CHHHH--------------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence 76654 2677889999999999999999999999999999999999999 78999999999999997
Q ss_pred cCC-cCCC-CC-CCccEEeccCCCCCCcCCCCcccccccccccc
Q 046284 370 MLQ-SLPE-LP-LCLESLDLTGCNMLRSLPELPLCLHSLNATNC 410 (618)
Q Consensus 370 ~l~-~lp~-l~-~~L~~L~l~~c~~l~~l~~~~~~L~~L~i~~c 410 (618)
... .+|+ .| +.|++||++||..+..-...+..++.+...+.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheec
Confidence 644 3343 56 89999999999876544444445555544443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.4e-24 Score=257.06 Aligned_cols=311 Identities=24% Similarity=0.370 Sum_probs=211.1
Q ss_pred hhhccC-ccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-CCCCceEEEccCCC
Q 046284 23 GAFTNM-SNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSK 100 (618)
Q Consensus 23 ~~f~~l-~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~ 100 (618)
..|..+ .+||.|.+.+++. ..+|..+. +.+|+.|++.++.++.+|..+ .+++|+.|+|+++.
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l--------------~~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPL--------------RCMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred cchhhcCcccEEEEecCCCC--------------CCCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 446555 4699999988765 55665552 357888888888887777666 67788888887653
Q ss_pred -ceeccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCC--CCCccEEEccCCCC-cccCccc
Q 046284 101 -VEQLWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLI--SGKVTSLNLSKSAI-EEVPSSI 175 (618)
Q Consensus 101 -i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~L~~L~L~~n~i-~~l~~~i 175 (618)
++.+| .+..+++|++|+|++|..+..+| .+..+++|+.|++++|..+..+|.. +.+|+.|+++++.. ..+|..
T Consensus 646 ~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 646 NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-
Confidence 55565 36667788888888877777777 4566777888888888777777764 45777777777643 344432
Q ss_pred cCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc-------ccchhhhCCCCCCEEEecCcC-CccCCccCC
Q 046284 176 ECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE-------RFPEILEKMEHLERINLNKTA-ITELPSSFE 247 (618)
Q Consensus 176 ~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-------~~~~~~~~l~~L~~L~L~~n~-i~~lp~~l~ 247 (618)
..+|+.|++++|.+ ..+|..+ .+++|++|.+.++.... ..+......++|+.|++++|. +.++|.+++
T Consensus 724 --~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 --STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred --cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 35677788877663 4556544 46777777776643211 112223345688899998874 457888889
Q ss_pred CCCCCCEEEeccCCCccccCcccCCCccceEEEecCcc-cccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc
Q 046284 248 NLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSA-ISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME 326 (618)
Q Consensus 248 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~ 326 (618)
++++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|. ..++|+.|++++|.+.+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------cccccCEeECCCCCCcc
Confidence 99999999999998888888765 67777777777653 222221 12456677777777777
Q ss_pred CCccccCCCCCCEEeCCCC-CCccCcccccCCcccceeeccccccCCcC
Q 046284 327 IPQEIACLSSLTTLNLSGN-SFESLPASIKQLSQLRSLHLEGCKMLQSL 374 (618)
Q Consensus 327 ~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 374 (618)
+|.++..+++|+.|++++| ++..+|..+..+++|+.|++++|..+..+
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 7777777777777777764 56666666667777777777777665543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-25 Score=237.12 Aligned_cols=383 Identities=23% Similarity=0.282 Sum_probs=275.5
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF- 86 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~- 86 (618)
+.|+++.|-....+-++.++.-+|+.|++++|.+ ..+|..+..++ +|+.|+++.|.+.++|...
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--------------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--------------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCS 88 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeecccccc--------------ccCCchhhhHH-HHhhcccchhhHhhCchhhh
Confidence 4567777767776667777777899999999887 77888888885 9999999999999999776
Q ss_pred CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccC-CCCCCCC-------------------CcEEeccCCC
Q 046284 87 KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVC-------------------PVTINFSYCV 146 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~-------------------L~~L~l~~~~ 146 (618)
++.+|++|.|.+|.+..+|.++..+++|+.|++++|. ...+| .+..+.. ++.+++..+.
T Consensus 89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV 167 (1081)
T ss_pred hhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh
Confidence 8999999999999999999999999999999999997 44444 2222222 4445555554
Q ss_pred CCCcCCCCCCCccE-EEccCCCCcccCccccCCC--------------------CCcEEecccCcCccchhhhccCCCCC
Q 046284 147 NLIEFPLISGKVTS-LNLSKSAIEEVPSSIECLT--------------------DLKKLNLKYCKRLKRISTRFCKLRSL 205 (618)
Q Consensus 147 ~l~~~~~~~~~L~~-L~L~~n~i~~l~~~i~~l~--------------------~L~~L~L~~~~~~~~l~~~~~~l~~L 205 (618)
....++.....++. |+|++|.+..+ .+..+. +|+.|+.+.|.+....+. ..-.+|
T Consensus 168 l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl 243 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNL 243 (1081)
T ss_pred cccchhcchhhhheeeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccc
Confidence 45555656666666 88888877622 122333 344444444443322211 113466
Q ss_pred cEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcc
Q 046284 206 VDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSA 285 (618)
Q Consensus 206 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~ 285 (618)
++++++.+... .+|++++.+.+|+.++...|.++.+|..+....+|+.|.+..| .+..+|.....+++|+.|++..|.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc
Confidence 77777775543 3457777777777777777777777777777777777777766 345566777788888888888888
Q ss_pred cccCCcchhhccC-------------------------CCceEecCCCC----------CCCCCCeEeccCCCCCcCCcc
Q 046284 286 ISQLPSSSVAYSN-------------------------RLGVLYFSRCK----------GLAYLGHLDMRNCAVMEIPQE 330 (618)
Q Consensus 286 l~~~~~~~~~~~~-------------------------~L~~L~l~~~~----------~l~~L~~L~L~~n~l~~~p~~ 330 (618)
+..+|...+.... .|+.|++.++. ++.+|+.|+|++|++.++|..
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 8888876554332 23333333322 788999999999999998875
Q ss_pred -ccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCC--CCCccEEeccCCCCCC-cCCCC-c-ccccc
Q 046284 331 -IACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPEL--PLCLESLDLTGCNMLR-SLPEL-P-LCLHS 404 (618)
Q Consensus 331 -l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l--~~~L~~L~l~~c~~l~-~l~~~-~-~~L~~ 404 (618)
+.+++.|++|+||||+++.+|..+..++.|++|...+|. +..+|++ .+.|+.+|++.|..-. .++.. + ++|++
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 667889999999999999999999999999999988886 4567764 4689999998776433 23332 2 67888
Q ss_pred ccccccccc
Q 046284 405 LNATNCNRL 413 (618)
Q Consensus 405 L~i~~c~~l 413 (618)
|++.+..++
T Consensus 481 LdlSGN~~l 489 (1081)
T KOG0618|consen 481 LDLSGNTRL 489 (1081)
T ss_pred eeccCCccc
Confidence 888876653
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.6e-21 Score=215.34 Aligned_cols=262 Identities=18% Similarity=0.221 Sum_probs=209.1
Q ss_pred cCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCC
Q 046284 67 KKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 146 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~ 146 (618)
..-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|+ ++.+|.. .++|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCc
Confidence 456789999999999998763 4899999999999999853 5889999999986 7778754 5789999999884
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKM 226 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 226 (618)
+..+|..+.+|+.|++++|+++.+|.. +++|+.|++++|++.+ +|.. ..+|+.|++++|.+.+ +|.. .
T Consensus 274 -L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p 341 (788)
T PRK15387 274 -LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---P 341 (788)
T ss_pred -hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---c
Confidence 667787778899999999999998863 4789999999987654 4542 3468888999887654 4432 2
Q ss_pred CCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecC
Q 046284 227 EHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFS 306 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 306 (618)
.+|++|++++|+++.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|..
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l-------------- 400 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL-------------- 400 (788)
T ss_pred cccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc--------------
Confidence 4799999999999998863 357888899988655 46653 35789999999998887742
Q ss_pred CCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCC
Q 046284 307 RCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLP 375 (618)
Q Consensus 307 ~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 375 (618)
.++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|+.....+
T Consensus 401 ----~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 ----PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ----ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 35688889999999888854 357888999999999999889999999999999998765543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.4e-20 Score=207.95 Aligned_cols=257 Identities=22% Similarity=0.230 Sum_probs=184.7
Q ss_pred cceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecccccc
Q 046284 30 NMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEK 109 (618)
Q Consensus 30 ~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~ 109 (618)
+-..|+++++.+ ..+|..+. .+|+.|++.+|.++.+|. .+++|++|++++|+|+.+|..
T Consensus 202 ~~~~LdLs~~~L--------------tsLP~~l~---~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l-- 260 (788)
T PRK15387 202 GNAVLNVGESGL--------------TTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL-- 260 (788)
T ss_pred CCcEEEcCCCCC--------------CcCCcchh---cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc--
Confidence 355667766554 44565442 467777777777777775 356777777777777777643
Q ss_pred ccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccC
Q 046284 110 NFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYC 189 (618)
Q Consensus 110 ~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~ 189 (618)
.++|+.|++++|. +..+|.+ ..+|+.|++++| .+..+|..+.+|+.|++++|.+..+|... .+|+.|++++|
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~l--p~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N 332 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPAL--PSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNN 332 (788)
T ss_pred -ccccceeeccCCc-hhhhhhc--hhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCc---ccccccccccC
Confidence 3577777777775 5566542 356777777776 45566766677888888888888776532 45777788887
Q ss_pred cCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcc
Q 046284 190 KRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDN 269 (618)
Q Consensus 190 ~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 269 (618)
.+. .+|.. ..+|++|++++|.+.. +|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.+. .+|..
T Consensus 333 ~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l 400 (788)
T PRK15387 333 QLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL 400 (788)
T ss_pred ccc-ccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc
Confidence 654 34531 2478888888877654 4432 34678888888988888864 357889999988655 45543
Q ss_pred cCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc
Q 046284 270 IGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 270 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (618)
.++|+.|++++|.++.+|.. ..+|+.|++++|.+..+|..+..+++|+.|+|++|.++
T Consensus 401 ---~s~L~~LdLS~N~LssIP~l------------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 401 ---PSELKELMVSGNRLTSLPML------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ---ccCCCEEEccCCcCCCCCcc------------------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 35788999999999888742 23577889999999999999999999999999999998
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1e-18 Score=194.37 Aligned_cols=245 Identities=21% Similarity=0.296 Sum_probs=120.3
Q ss_pred cCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCC
Q 046284 67 KKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 146 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~ 146 (618)
.+...|+++++.++.+|..+ .++|+.|++++|+++.+|..+. .+|++|++++|. ++.+|.. -..+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~Ls~N- 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT-LPDTIQEMELSIN- 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChh-hhccccEEECcCC-
Confidence 45677777777777777654 3567777777777777775443 477777777765 5555531 1234555555554
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKM 226 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 226 (618)
.+..+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+.. +|..+.
T Consensus 252 --------------------~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-- 303 (754)
T PRK15370 252 --------------------RITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-- 303 (754)
T ss_pred --------------------ccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--
Confidence 4444443332 24444444444332 2333221 244444444443322 222211
Q ss_pred CCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecC
Q 046284 227 EHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFS 306 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 306 (618)
++|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.++.+|..+
T Consensus 304 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l------------- 365 (754)
T PRK15370 304 SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL------------- 365 (754)
T ss_pred hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh-------------
Confidence 234555555555554443321 345555555543322 333322 34555555555554444321
Q ss_pred CCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccc----cCCcccceeeccccc
Q 046284 307 RCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASI----KQLSQLRSLHLEGCK 369 (618)
Q Consensus 307 ~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~~~ 369 (618)
.++|+.|++++|.+..+|..+. .+|+.|++++|+++.+|..+ ..++++..|++.+|+
T Consensus 366 ----p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 ----PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ----cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1244455555555555544432 24555555555555544332 223445555555554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=193.26 Aligned_cols=246 Identities=17% Similarity=0.286 Sum_probs=155.3
Q ss_pred ccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccc
Q 046284 29 SNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGE 108 (618)
Q Consensus 29 ~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~ 108 (618)
.+...|+++++.+ ..+|.. +|.+|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+
T Consensus 178 ~~~~~L~L~~~~L--------------tsLP~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l 239 (754)
T PRK15370 178 NNKTELRLKILGL--------------TTIPAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL 239 (754)
T ss_pred cCceEEEeCCCCc--------------CcCCcc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh
Confidence 4577888887654 556654 35689999999999999998764 59999999999999998765
Q ss_pred cccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCC-CCccEEEccCCCCcccCccccCCCCCcEEecc
Q 046284 109 KNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLK 187 (618)
Q Consensus 109 ~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~ 187 (618)
. .+|+.|+|++|. +..+|... ..+|+.|++++| .+..+|..+ .+|+.|++++|.++.+|..+.
T Consensus 240 ~--~~L~~L~Ls~N~-L~~LP~~l-~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp----------- 303 (754)
T PRK15370 240 P--DTIQEMELSINR-ITELPERL-PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLP----------- 303 (754)
T ss_pred h--ccccEEECcCCc-cCcCChhH-hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccch-----------
Confidence 4 589999999997 66776421 235666666654 333344322 244444444444444443221
Q ss_pred cCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccC
Q 046284 188 YCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLP 267 (618)
Q Consensus 188 ~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 267 (618)
++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|
T Consensus 304 ---------------~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 304 ---------------SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLP 362 (754)
T ss_pred ---------------hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCC
Confidence 245555555554432 23222 1456666666666666665442 56666666666543 345
Q ss_pred cccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccc----cCCCCCCEEeCC
Q 046284 268 DNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEI----ACLSSLTTLNLS 343 (618)
Q Consensus 268 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l----~~l~~L~~L~Ls 343 (618)
..+. ++|+.|++++|.++.+|.... ..|+.|++++|++..+|..+ ..++.+..|++.
T Consensus 363 ~~lp--~~L~~LdLs~N~Lt~LP~~l~-----------------~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 363 ETLP--PTITTLDVSRNALTNLPENLP-----------------AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred hhhc--CCcCEEECCCCcCCCCCHhHH-----------------HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEee
Confidence 4332 467777777777776665432 24666677777777666543 335777888888
Q ss_pred CCCCc
Q 046284 344 GNSFE 348 (618)
Q Consensus 344 ~n~l~ 348 (618)
+|.+.
T Consensus 424 ~Npls 428 (754)
T PRK15370 424 YNPFS 428 (754)
T ss_pred CCCcc
Confidence 88775
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=5.1e-21 Score=187.18 Aligned_cols=345 Identities=19% Similarity=0.219 Sum_probs=231.8
Q ss_pred eEEEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEc-CCCCcCCCcCceEEEeC-CCCCCccC
Q 046284 6 EGIFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQL-PNGLDYLPKKLRYLHWD-TYPLRTLP 83 (618)
Q Consensus 6 ~~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~-~~~l~~lp 83 (618)
+...+++..|.+..+++.+|+.+++||.|++++|.+ ..+ |+.+..++ +|..|-+. +|.|+.+|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--------------s~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--------------SFIAPDAFKGLA-SLLSLVLYGNNKITDLP 132 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccch--------------hhcChHhhhhhH-hhhHHHhhcCCchhhhh
Confidence 346678888999999999999999999999999987 444 34455554 55555554 49999999
Q ss_pred CCC--CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCC---------
Q 046284 84 SNF--KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLI--------- 149 (618)
Q Consensus 84 ~~~--~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~--------- 149 (618)
... .+..|+.|.+.-|++.-+. +.+..+++|..|.+.+|. +..++ .+..+..++++.+..++...
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 875 7999999999999998765 778899999999999986 55555 56677888888887765321
Q ss_pred ---cCCCCCCC---ccEEEccCCCCcccCcc-c-cCCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCccCccccc
Q 046284 150 ---EFPLISGK---VTSLNLSKSAIEEVPSS-I-ECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCVNLERFP 220 (618)
Q Consensus 150 ---~~~~~~~~---L~~L~L~~n~i~~l~~~-i-~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~ 220 (618)
..|...+- .....+.+.++..++.. + ..+..+..=-.+.|......| ..|.++++|++|++++|.+.+.-+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 11111111 11122333444433321 1 111122111222333333333 358899999999999999999999
Q ss_pred hhhhCCCCCCEEEecCcCCccCC-ccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCC--cchhhcc
Q 046284 221 EILEKMEHLERINLNKTAITELP-SSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLP--SSSVAYS 297 (618)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~ 297 (618)
.+|.+..++++|.|.+|++..+. ..|.++.+|+.|+|++|++....|..|..+.+|..|++-.|.+..-- ......+
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 99999999999999999999774 45889999999999999999999999999999999999887554110 0011111
Q ss_pred CCCceEecCCCCCCCCCCeEeccCCCCCc-------------------------------------CCccccCCCCCCEE
Q 046284 298 NRLGVLYFSRCKGLAYLGHLDMRNCAVME-------------------------------------IPQEIACLSSLTTL 340 (618)
Q Consensus 298 ~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-------------------------------------~p~~l~~l~~L~~L 340 (618)
.+=....-..|.....++.+.+++..+.+ +|..+ ...-.+|
T Consensus 372 r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~tel 449 (498)
T KOG4237|consen 372 RKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTEL 449 (498)
T ss_pred hhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHH
Confidence 11112222334444444555544443322 11111 1234567
Q ss_pred eCCCCCCccCcccccCCcccceeeccccccC
Q 046284 341 NLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 341 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
++.+|.++.+|.. .+.+| .+++++|+..
T Consensus 450 yl~gn~~~~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 450 YLDGNAITSVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred hcccchhcccCHH--HHhhh-hcccccCcee
Confidence 8888888888866 66777 8888888753
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=162.32 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=80.3
Q ss_pred cCCCcCceEEEeCCCCCCccCCCC--CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCcccC--CCCCCCCC
Q 046284 63 DYLPKKLRYLHWDTYPLRTLPSNF--KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCP 137 (618)
Q Consensus 63 ~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L 137 (618)
..+|.+-..++++.|.|++||... .+++|+.|||++|+|+.+ |+.|+.+..|..|-+.++..++++| .|.++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 345567788888888888888654 788888888888888887 5788888888888777755577777 56667777
Q ss_pred cEEeccCCCCC---CcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccC
Q 046284 138 VTINFSYCVNL---IEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYC 189 (618)
Q Consensus 138 ~~L~l~~~~~l---~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~ 189 (618)
+.|.+.-|..- ......+.++..|.+..|.+..++. ++..+..++.+.+..|
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 76666554321 1111122334444444444444443 3444444444444433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=144.74 Aligned_cols=169 Identities=27% Similarity=0.352 Sum_probs=123.1
Q ss_pred CCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCc
Q 046284 79 LRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKV 158 (618)
Q Consensus 79 l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L 158 (618)
+..+|..|++.+.+.|.|++|+++.+|..+..+.+|+.|++++|+ +
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-i--------------------------------- 68 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-I--------------------------------- 68 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-h---------------------------------
Confidence 345677778888888888888888888888777777777777665 2
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc-ccchhhhCCCCCCEEEecCc
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE-RFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~n 237 (618)
+++|.++..+++|+.|+++-|+ +..+|..|+.++.|+.||+.+|...+ .+|..|-.|..|+.|++++|
T Consensus 69 ----------e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 69 ----------EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred ----------hhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 5556666666666666666654 44566667777777777777766543 55777777778888888888
Q ss_pred CCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcch
Q 046284 238 AITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSS 293 (618)
Q Consensus 238 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 293 (618)
.+.-+|..++++++|+.|.+.+|.. -.+|..++.+..|++|.+.+|+++-+|+..
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 8888888888888888888888743 456777777777777777777777766554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=1.4e-16 Score=163.91 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCcEEecCCccCcc----ccchhhhCCCCCCEEEecCcCCc-----cCCccCCCCCCCCEEEeccCCCcc----ccCcc
Q 046284 203 RSLVDLFLNGCVNLE----RFPEILEKMEHLERINLNKTAIT-----ELPSSFENLPGLEELFVEDCSKLD----KLPDN 269 (618)
Q Consensus 203 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~----~lp~~ 269 (618)
++|++|++++|.+.. .++..+..+++|++|++++|.++ .++..+..+++|+.|++++|.+.+ .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455555555554442 12233444445555555555544 122223334455555555554331 12223
Q ss_pred cCCCccceEEEecCcccc
Q 046284 270 IGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 270 l~~l~~L~~L~l~~n~l~ 287 (618)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 344455555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.7e-17 Score=140.42 Aligned_cols=149 Identities=31% Similarity=0.505 Sum_probs=96.4
Q ss_pred hhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc--cCCcchhhccCCC
Q 046284 223 LEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS--QLPSSSVAYSNRL 300 (618)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L 300 (618)
+..+.+|+.|++.+|+|+++|.+++.+++|+.|++.-| .+..+|..|+.++.|+.||+.+|.+. .+|..+|
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff------ 124 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF------ 124 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchh------
Confidence 34444444444444555555555555555555554433 33344555555555555555555444 3444444
Q ss_pred ceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCCCCC
Q 046284 301 GVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPELPLC 380 (618)
Q Consensus 301 ~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~ 380 (618)
.+..|+.|++++|.+.-+|..++.+++|+.|.+..|.+-++|..++.+.+|++|++.+|+.. .+|+.
T Consensus 125 ---------~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~----vlppe 191 (264)
T KOG0617|consen 125 ---------YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT----VLPPE 191 (264)
T ss_pred ---------HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee----ecChh
Confidence 55666777777777777888888899999999999999999999999999999999998732 34566
Q ss_pred ccEEeccCCCC
Q 046284 381 LESLDLTGCNM 391 (618)
Q Consensus 381 L~~L~l~~c~~ 391 (618)
|-.|++-++..
T Consensus 192 l~~l~l~~~k~ 202 (264)
T KOG0617|consen 192 LANLDLVGNKQ 202 (264)
T ss_pred hhhhhhhhhHH
Confidence 66777766543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=3e-15 Score=154.06 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=8.2
Q ss_pred CCCCCcEEeccCCC
Q 046284 133 HFVCPVTINFSYCV 146 (618)
Q Consensus 133 ~l~~L~~L~l~~~~ 146 (618)
.+.+|+.|++++|.
T Consensus 21 ~l~~L~~l~l~~~~ 34 (319)
T cd00116 21 KLLCLQVLRLEGNT 34 (319)
T ss_pred HHhhccEEeecCCC
Confidence 34446666666664
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-12 Score=148.46 Aligned_cols=256 Identities=23% Similarity=0.265 Sum_probs=132.7
Q ss_pred cCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCC-CcccCC--CCCCCCCcEEeccCCCCCCcCCCCCC--
Q 046284 82 LPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKS-LRSFPS--NLHFVCPVTINFSYCVNLIEFPLISG-- 156 (618)
Q Consensus 82 lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~lp~--~~~l~~L~~L~l~~~~~l~~~~~~~~-- 156 (618)
.|...+....+...+-+|.+..++.... .++|++|-+.++.. +..++. |..++.|+.||+++|..+..+|..++
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 3333334444555555555544433222 22455555555542 334443 55556666666666666655555444
Q ss_pred -CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc--CccccchhhhCCCCCCEEE
Q 046284 157 -KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV--NLERFPEILEKMEHLERIN 233 (618)
Q Consensus 157 -~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~ 233 (618)
+|++|+++++.|..+|.+++++.+|.+|++..+.....+|.....+.+|++|.+..-. .....-..+.++++|+.+.
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 5666777777778888888888888888888877777777666668888888886643 1122223344555555555
Q ss_pred ecCcCCccCCccCCCCCCCC----EEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC
Q 046284 234 LNKTAITELPSSFENLPGLE----ELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK 309 (618)
Q Consensus 234 L~~n~i~~lp~~l~~l~~L~----~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 309 (618)
...... .+-..+..++.|. .+.+.+ ......+..++.+.+|+.|.+.++.+.+....... ....+.
T Consensus 675 ~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~---~~~~~~----- 744 (889)
T KOG4658|consen 675 ITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE---SLIVLL----- 744 (889)
T ss_pred eecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhccccc---ccchhh-----
Confidence 543333 1111122223332 222222 12233445566677777777777766543322110 000000
Q ss_pred CCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc
Q 046284 310 GLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (618)
.++++..+.+.+|.....+.+....++|+.|.+..+...
T Consensus 745 ~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred hHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 123333444444444444444444566666666665443
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=2.4e-12 Score=146.01 Aligned_cols=204 Identities=26% Similarity=0.365 Sum_probs=149.1
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCc--CccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEE
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCK--RLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERIN 233 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~--~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 233 (618)
...+...+-+|.+..++....+ ++|++|-+.++. ........|..++.|++|||++|...+.+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4678888888888888776654 489999999986 3444445578899999999999999999999999999999999
Q ss_pred ecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCC
Q 046284 234 LNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAY 313 (618)
Q Consensus 234 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 313 (618)
++++.+..+|..++++..|.+|++..+.....+|.....+.+|++|.+...... . ..+.+.....+.+
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~-----------~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-N-----------DKLLLKELENLEH 669 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-c-----------chhhHHhhhcccc
Confidence 999999999999999999999999999888888888888999999998765411 1 1111111134555
Q ss_pred CCeEeccCCCCCcCCccccCCCCCC----EEeCCCCCCccCcccccCCcccceeeccccccCCc
Q 046284 314 LGHLDMRNCAVMEIPQEIACLSSLT----TLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 314 L~~L~L~~n~l~~~p~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 373 (618)
|+.+....... .+...+..+..|. .+.+.++.....+..+..+.+|+.|.+.+|...+.
T Consensus 670 L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 670 LENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 55555544433 2112222222222 34444455556666777888888888888876543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=7.4e-11 Score=125.19 Aligned_cols=178 Identities=31% Similarity=0.487 Sum_probs=112.4
Q ss_pred CCccEEEccCCCCcccCccccCCC-CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLT-DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~-~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
..++.|++.+|.+..++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+.. +|...+..++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheec
Confidence 357777777788888887777774 8888888887643 343446677777777777766543 3333446677777777
Q ss_pred cCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCC
Q 046284 235 NKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYL 314 (618)
Q Consensus 235 ~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L 314 (618)
++|.+..+|..+.....|++|.+++|.. ...+..+.++ .++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~--------------------------------------~~l 234 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNL--------------------------------------KNL 234 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhc--------------------------------------ccc
Confidence 7777777777655555677777766641 2222223333 344
Q ss_pred CeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCC
Q 046284 315 GHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLP 375 (618)
Q Consensus 315 ~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 375 (618)
..+.+.+|++..++..++.+++++.|++++|.++.++. +..+.+|+.|+++++......|
T Consensus 235 ~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 44444555555555556666666777777776666664 6666677777777666554444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.6e-11 Score=125.09 Aligned_cols=192 Identities=23% Similarity=0.353 Sum_probs=113.7
Q ss_pred EEEeCCCCC-CccCCCCCCCCceEEEccCCCceeccccccccc-cCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCC
Q 046284 71 YLHWDTYPL-RTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFK-YLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 71 ~L~l~~~~l-~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~-~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~ 147 (618)
.+....+.+ ..+.....++.++.|++.+|.+++++.....+. +|+.|++++|+ +..+| .+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-
Confidence 456666665 333333355677777777777777776666664 77777777776 55553 56666777777776663
Q ss_pred CCcCCC---CCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhh
Q 046284 148 LIEFPL---ISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILE 224 (618)
Q Consensus 148 l~~~~~---~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 224 (618)
+..++. ...+|+.|++++|.+..+|..+.....|++|.+++|.... .+..+.++.++..|.+.++.... ++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccchhc
Confidence 333333 3456666666666677777666555667777777664222 23335556666666655543322 244555
Q ss_pred CCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccC
Q 046284 225 KMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLP 267 (618)
Q Consensus 225 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp 267 (618)
.+.++++|++++|.++.++. ++.+.+++.|+++++......+
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 56666666666666666655 5555666666666655444443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=5.6e-12 Score=129.70 Aligned_cols=192 Identities=23% Similarity=0.355 Sum_probs=134.6
Q ss_pred ccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 158 VTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
....+++.|++.++|..+..+..|+.+.+..|. ...+|..++.+..|.+|+|+.|++. .+|..+..++ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 456678888888888888778888888887765 3456666777888888888776543 3455555544 777777888
Q ss_pred CCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeE
Q 046284 238 AITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHL 317 (618)
Q Consensus 238 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L 317 (618)
+++.+|..++.+..|..|+.+.|. +..+|..++.+.+|+.|++..|.+..+|.... .-.|..|
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~----------------~LpLi~l 216 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC----------------SLPLIRL 216 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh----------------CCceeee
Confidence 888777777777777777777764 34566667777777777777777777776543 1236677
Q ss_pred eccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccc---cCCcccceeeccccc
Q 046284 318 DMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASI---KQLSQLRSLHLEGCK 369 (618)
Q Consensus 318 ~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~L~~~~ 369 (618)
|++.|++..+|-.|..|..|++|-|.+|.+.+=|..+ +...=-++|++.-|+
T Consensus 217 DfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 7777777777777777777777777777777666444 334445667777764
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.8e-11 Score=115.24 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=98.7
Q ss_pred CCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEE
Q 046284 154 ISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERIN 233 (618)
Q Consensus 154 ~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 233 (618)
.++-|+++||++|.|+++.+++.-.++++.|++++|.+...-. +..+++|+.|||++|.... ...+-..+.++++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 3456889999999999999999999999999999988765433 6778999999999876543 334445677888888
Q ss_pred ecCcCCccCCccCCCCCCCCEEEeccCCCccc-cCcccCCCccceEEEecCcccccCCc
Q 046284 234 LNKTAITELPSSFENLPGLEELFVEDCSKLDK-LPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 234 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
+++|.|..+. .++.+-+|..|++++|++... --..+++++.|+.+.+.+|.+..++.
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888887764 366777788888887765431 12346677777777777776665554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.8e-11 Score=126.12 Aligned_cols=177 Identities=29% Similarity=0.454 Sum_probs=137.3
Q ss_pred CCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEe
Q 046284 178 LTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFV 257 (618)
Q Consensus 178 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L 257 (618)
+.--...|++.|++ ..+|..++.+..|+.+.++.|.+ ..+|+.+.++..|.+|+++.|++..+|..+..++ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 44455677777764 45666677777888888877554 4567788888888888888888888888777765 777877
Q ss_pred ccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCC
Q 046284 258 EDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSL 337 (618)
Q Consensus 258 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L 337 (618)
++| .++.+|+.++.+..|..|+.+.|.+..+|.... ++.+|+.|.++.|++..+|..+.. -.|
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~---------------~l~slr~l~vrRn~l~~lp~El~~-LpL 213 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG---------------YLTSLRDLNVRRNHLEDLPEELCS-LPL 213 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhh---------------hHHHHHHHHHhhhhhhhCCHHHhC-Cce
Confidence 776 567778888888888888888888888887776 777888888888888888888774 458
Q ss_pred CEEeCCCCCCccCcccccCCcccceeeccccccCCcCC
Q 046284 338 TTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLP 375 (618)
Q Consensus 338 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 375 (618)
..||++.|++..+|-.|..|..|++|-|.+|+. ++-|
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL-qSPP 250 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL-QSPP 250 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCCC-CCCh
Confidence 888888888888888888888888888888873 4433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.6e-11 Score=117.64 Aligned_cols=201 Identities=21% Similarity=0.242 Sum_probs=99.6
Q ss_pred CCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCccCccc--cchhhhCCCCCCEEEecCcCCccCCcc--CCCCCC
Q 046284 177 CLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCVNLER--FPEILEKMEHLERINLNKTAITELPSS--FENLPG 251 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~n~i~~lp~~--l~~l~~ 251 (618)
++.+|+...|.++....... .....+++++.|+|++|-+... +......+++|+.|+++.|.+...-.+ -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34445555554443211110 1233455555555555443322 223445556666666666655532221 124556
Q ss_pred CCEEEeccCCCcc-ccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCC--
Q 046284 252 LEELFVEDCSKLD-KLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIP-- 328 (618)
Q Consensus 252 L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p-- 328 (618)
|+.|.+++|.+.. .+......+|+|+.|++..|....+.... .+.+..|++|+|++|++.+++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--------------~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--------------TKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--------------hhhhhHHhhccccCCcccccccc
Confidence 6666666665542 22223345566666666666311111000 113455666666666666654
Q ss_pred ccccCCCCCCEEeCCCCCCccC--ccc-----ccCCcccceeecccccc--CCcCCC--CCCCccEEeccCCCC
Q 046284 329 QEIACLSSLTTLNLSGNSFESL--PAS-----IKQLSQLRSLHLEGCKM--LQSLPE--LPLCLESLDLTGCNM 391 (618)
Q Consensus 329 ~~l~~l~~L~~L~Ls~n~l~~l--p~~-----l~~l~~L~~L~L~~~~~--l~~lp~--l~~~L~~L~l~~c~~ 391 (618)
...+.++.|+.|+++.|.+.++ |+. ...+++|++|++..|+. ..++-. ..++|+.|.+..++.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 3455667777777777766633 333 34567777777777764 222222 234566666555443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-10 Score=111.24 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=85.0
Q ss_pred hCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 224 EKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
...+.|++||+++|.|+++..++.-.|.++.|+++.|.+...- .+..+++|+.||+++|.++++...-.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~--------- 349 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHL--------- 349 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHh---------
Confidence 3445677888888888888777777778888888877655432 25666777777777776665544333
Q ss_pred ecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeecccccc
Q 046284 304 YFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 304 ~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~ 370 (618)
.+-+.++|.+++|.+.++ ..++.+-+|..||+++|+|..+. ..++++|.|+.|.|.+|+.
T Consensus 350 ------KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 ------KLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ------hhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 455666666666665554 24556667777777777776554 4566777777777777663
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.9e-10 Score=101.67 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=10.1
Q ss_pred CCccCCCCCCCCceEEEccCCCceecccccc-ccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCC
Q 046284 79 LRTLPSNFKPKNLVALNLSCSKVEQLWEGEK-NFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYC 145 (618)
Q Consensus 79 l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~ 145 (618)
++..|...++.++++|+|++|+|+.+. .+. .+.+|+.|+|++|. ++.++.+..+++|++|++++|
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCC
Confidence 333444444555666666666666552 233 35566666666665 444444444444444444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=7.9e-10 Score=101.29 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCCCCeEeccCCCCCcCCccc-cCCCCCCEEeCCCCCCccCc--ccccCCcccceeeccccccC
Q 046284 311 LAYLGHLDMRNCAVMEIPQEI-ACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 311 l~~L~~L~L~~n~l~~~p~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l 371 (618)
++.|++|++++|.+..+.+.+ ..+++|++|++++|+|..+. ..+..+++|+.|++.+|+..
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 444455555555555544333 23555555555555555332 23455566666666666543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.4e-10 Score=113.46 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=49.2
Q ss_pred CCCCCEEEeccCCCcccc-CcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC
Q 046284 249 LPGLEELFVEDCSKLDKL-PDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI 327 (618)
Q Consensus 249 l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~ 327 (618)
+..|++|+|++|.+...- -...+.++.|+.|+++.+.+.++..... ..+.. ...+++|+.|+++.|++.++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~---~s~~k-----t~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV---ESLDK-----THTFPKLEYLNISENNIRDW 316 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc---cchhh-----hcccccceeeecccCccccc
Confidence 344555555555443221 1234555666666666665554321110 00000 11577888888888888665
Q ss_pred C--ccccCCCCCCEEeCCCCCCc
Q 046284 328 P--QEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 328 p--~~l~~l~~L~~L~Ls~n~l~ 348 (618)
+ ..+..+++|+.|.+.+|.++
T Consensus 317 ~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccchhhccchhhhhhccccccc
Confidence 4 34555677777777777665
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=2.2e-10 Score=111.88 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=68.7
Q ss_pred CCCCEEEecCcCCccCC-----ccCCCCCCCCEEEeccCCCcc----ccCcccCCCccceEEEecCcccccCCcchhhcc
Q 046284 227 EHLERINLNKTAITELP-----SSFENLPGLEELFVEDCSKLD----KLPDNIGNLKCLFIISAVGSAISQLPSSSVAYS 297 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~lp-----~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 297 (618)
+.|+++....|++..-+ ..+...+.|+.+.+..|.+.. .+...+..+++|++||+.+|.++.-.....+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak- 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK- 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-
Confidence 34555555555444222 123344455555555443331 12233455556666666665554222111100
Q ss_pred CCCceEecCCCCCCCCCCeEeccCCCCCc-----CCccc-cCCCCCCEEeCCCCCCc-----cCcccccCCcccceeecc
Q 046284 298 NRLGVLYFSRCKGLAYLGHLDMRNCAVME-----IPQEI-ACLSSLTTLNLSGNSFE-----SLPASIKQLSQLRSLHLE 366 (618)
Q Consensus 298 ~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-----~p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~ 366 (618)
-.+.++.|++|++++|.+.. +...+ ...|+|+.|.+.+|.++ .+-..+...+.|+.|+|+
T Consensus 236 ---------aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 236 ---------ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred ---------HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 00134556666666666654 22222 23678888888888876 233445567788888888
Q ss_pred cccc
Q 046284 367 GCKM 370 (618)
Q Consensus 367 ~~~~ 370 (618)
+|+.
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 8764
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.78 E-value=2.5e-08 Score=102.26 Aligned_cols=156 Identities=24% Similarity=0.418 Sum_probs=89.2
Q ss_pred hhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCce
Q 046284 223 LEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGV 302 (618)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 302 (618)
+..+.+++.|+++++.++.+|. -..+|++|.+++|..+..+|..+. ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~n--------------------------- 95 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EG--------------------------- 95 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hh---------------------------
Confidence 3345677778888777777772 234688888888877666665321 23
Q ss_pred EecCCCCCCCCCCeEeccCC-CCCcCCccccCCCCCCEEeCCCCCC---ccCcccccCCcccceeecccccc--CCcCC-
Q 046284 303 LYFSRCKGLAYLGHLDMRNC-AVMEIPQEIACLSSLTTLNLSGNSF---ESLPASIKQLSQLRSLHLEGCKM--LQSLP- 375 (618)
Q Consensus 303 L~l~~~~~l~~L~~L~L~~n-~l~~~p~~l~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~~~~--l~~lp- 375 (618)
|++|++++| .+..+| ++|+.|+++++.. ..+|. +|+.|.+.+++. ...+|
T Consensus 96 -----------Le~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~ 152 (426)
T PRK15386 96 -----------LEKLTVCHCPEISGLP------ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN 152 (426)
T ss_pred -----------hhheEccCcccccccc------cccceEEeCCCCCcccccCcc------hHhheecccccccccccccc
Confidence 333444443 233333 3466666666543 34453 456666654331 12334
Q ss_pred CCCCCccEEeccCCCCCCcCCCCccccccccccccc--cccCC-CCCCccccccchhhhccc
Q 046284 376 ELPLCLESLDLTGCNMLRSLPELPLCLHSLNATNCN--RLQSL-PEIPSCLQELDASVLEKL 434 (618)
Q Consensus 376 ~l~~~L~~L~l~~c~~l~~l~~~~~~L~~L~i~~c~--~l~~l-~~~p~~L~~L~~~~~~~L 434 (618)
.+|++|+.|++++|..+...+..+.+|+.|.+..+. .+... +.+|+.+ .|+..+|-.+
T Consensus 153 ~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 153 LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccCCcccEEEecCCCcccCcccccccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 367889999999888665333355677777776532 22122 2466666 6666665443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=2.9e-09 Score=104.12 Aligned_cols=111 Identities=19% Similarity=0.311 Sum_probs=52.4
Q ss_pred CCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc-----CCccccCCCCCCEEeCCCC
Q 046284 271 GNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME-----IPQEIACLSSLTTLNLSGN 345 (618)
Q Consensus 271 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-----~p~~l~~l~~L~~L~Ls~n 345 (618)
+.-+.|+++....|++..-+....... .+..+.|+.+.+..|.|.. +...+..+++|+.|||..|
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~----------~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEA----------FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHH----------HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 344566666666666554443221100 0123444455555554433 2234455566666666666
Q ss_pred CCc-----cCcccccCCcccceeeccccccCCc--------CCCCCCCccEEeccCCCC
Q 046284 346 SFE-----SLPASIKQLSQLRSLHLEGCKMLQS--------LPELPLCLESLDLTGCNM 391 (618)
Q Consensus 346 ~l~-----~lp~~l~~l~~L~~L~L~~~~~l~~--------lp~l~~~L~~L~l~~c~~ 391 (618)
-++ .+...+..+++|++|++++|..... +.+..|+|+.|.+.+|..
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 554 2223445555666666666643211 112344566666555544
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=9.3e-08 Score=106.62 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc-cCCccCCCCCCCCEEEec
Q 046284 180 DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT-ELPSSFENLPGLEELFVE 258 (618)
Q Consensus 180 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~ 258 (618)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899999988889988999999999999999998899999999999999999999998 688889999999999999
Q ss_pred cCCCccccCcccCCC-ccceEEEecCccc
Q 046284 259 DCSKLDKLPDNIGNL-KCLFIISAVGSAI 286 (618)
Q Consensus 259 ~~~~~~~lp~~l~~l-~~L~~L~l~~n~l 286 (618)
+|.+.+.+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999989999887653 4667888888753
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=5.5e-09 Score=111.22 Aligned_cols=193 Identities=20% Similarity=0.153 Sum_probs=98.4
Q ss_pred CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCC--CCCccEEEcc
Q 046284 87 KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLI--SGKVTSLNLS 164 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~--~~~L~~L~L~ 164 (618)
.+++|+.|++.+|+|+++...+..+++|++|++++|. ++.+..+..++.|+.|++++|.. ..+... +..|+.++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i-~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLI-SDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcc-hhccCCccchhhhcccCC
Confidence 3444444444444444443334444444455554443 44444444444444555544422 111111 3455555555
Q ss_pred CCCCcccCcc-ccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC--CCCEEEecCcCCcc
Q 046284 165 KSAIEEVPSS-IECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME--HLERINLNKTAITE 241 (618)
Q Consensus 165 ~n~i~~l~~~-i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~--~L~~L~L~~n~i~~ 241 (618)
+|.+..+... ...+.+++.+.+.+|.+...-. +..+..+..+++..|.+...-+ +..+. .|+.+++++|.+..
T Consensus 171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 171 YNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc
Confidence 5555555443 4566777777777765443222 2223444444555554433221 11122 37778888888887
Q ss_pred CCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc
Q 046284 242 LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 242 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
++..+..+..+..|++.++.....- .+...+.+..+....+.+.
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 7666777778888888776544321 1334445555555555544
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=9.7e-08 Score=106.49 Aligned_cols=91 Identities=26% Similarity=0.382 Sum_probs=84.3
Q ss_pred CCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc-cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEec
Q 046284 204 SLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT-ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAV 282 (618)
Q Consensus 204 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~ 282 (618)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4789999999999999999999999999999999998 789899999999999999999999999999999999999999
Q ss_pred Ccccc-cCCcchh
Q 046284 283 GSAIS-QLPSSSV 294 (618)
Q Consensus 283 ~n~l~-~~~~~~~ 294 (618)
+|.++ .+|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 99988 5665543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.6e-08 Score=107.77 Aligned_cols=217 Identities=22% Similarity=0.214 Sum_probs=157.8
Q ss_pred cCceEEEeCCCCCCccCCC-CCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCC-CCCCCCCcEEeccC
Q 046284 67 KKLRYLHWDTYPLRTLPSN-FKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSY 144 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~l~~ 144 (618)
..++.+++..+........ ..+..+..+.+..|.|..+-..+..+++|+.|++.+|. +..+.. +..+++|+.|++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF 127 (414)
T ss_pred chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccc
Confidence 4566666666554433332 35677888889999998865668889999999999997 777777 88899999999999
Q ss_pred CCCCCcCC-CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCccCccccchh
Q 046284 145 CVNLIEFP-LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCVNLERFPEI 222 (618)
Q Consensus 145 ~~~l~~~~-~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~ 222 (618)
|.....-+ ..+..|+.|++++|.|..+.. +..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.... .
T Consensus 128 N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~ 203 (414)
T KOG0531|consen 128 NKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--G 203 (414)
T ss_pred cccccccchhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--c
Confidence 85432211 234459999999999998864 5558999999999998766554 2 467899999999998776532 3
Q ss_pred hhCCCCCCEEEecCcCCccCCccCCCCCC--CCEEEeccCCCccccCcccCCCccceEEEecCcccccCC
Q 046284 223 LEKMEHLERINLNKTAITELPSSFENLPG--LEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLP 290 (618)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~ 290 (618)
+..+..+..+++..|.++.+-. +..+.. |+.+++++|..... +..+..+..+..+++..+.+..+.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred hHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc
Confidence 3344455566888888886543 223333 89999999865432 255677888999999988877654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.7e-07 Score=69.33 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred ccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCC
Q 046284 158 VTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNG 212 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~ 212 (618)
|+.|++++|+++.+|. .+..+++|++|++++|++....+..|.++++|++|++++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 3444444444444432 233344444444444433333333333333333333333
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4e-07 Score=68.38 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=27.0
Q ss_pred CCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcc
Q 046284 228 HLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSA 285 (618)
Q Consensus 228 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~ 285 (618)
+|++|++++|+++.+|. .|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444454444444442 34444444444444444443334444444444444444443
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=1.2e-08 Score=101.94 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=106.3
Q ss_pred cCCCCCcEEecccCcCccc--hhhhccCCCCCcEEecCCccCccc--cchhhhCCCCCCEEEecCc-CCccC--CccCCC
Q 046284 176 ECLTDLKKLNLKYCKRLKR--ISTRFCKLRSLVDLFLNGCVNLER--FPEILEKMEHLERINLNKT-AITEL--PSSFEN 248 (618)
Q Consensus 176 ~~l~~L~~L~L~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~n-~i~~l--p~~l~~ 248 (618)
..+++|++|++++|..... +.....+++.++.+.+.||...+. +-..-+.+..+.++++..+ .++.. -..-.+
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 4466677777776654332 112234555666666666654321 1111223333445554443 22211 111234
Q ss_pred CCCCCEEEeccCCCccccC--cccCCCccceEEEecCcc-cccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCC
Q 046284 249 LPGLEELFVEDCSKLDKLP--DNIGNLKCLFIISAVGSA-ISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVM 325 (618)
Q Consensus 249 l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~ 325 (618)
+..|+.|+.++|...+..+ .--.+..+|+.+.+.+++ ++.......+ .+.+.|+.+++..|...
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------------rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------------RNCPHLERLDLEECGLI 359 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------------cCChhhhhhccccccee
Confidence 5666777777665543222 112345566666665553 2221111110 14556666666666544
Q ss_pred c---CCccccCCCCCCEEeCCCCCCc------cCcccccCCcccceeeccccccCCcCC----CCCCCccEEeccCCCCC
Q 046284 326 E---IPQEIACLSSLTTLNLSGNSFE------SLPASIKQLSQLRSLHLEGCKMLQSLP----ELPLCLESLDLTGCNML 392 (618)
Q Consensus 326 ~---~p~~l~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~L~~~~~l~~lp----~l~~~L~~L~l~~c~~l 392 (618)
. +...-.+++.|+.|.++.|... .+...-..+..|+.+.+++|+.+..-. ...++|+.+++.+|...
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 3 3333456788888888877433 223334567788888888887654321 12357888888888765
Q ss_pred Cc
Q 046284 393 RS 394 (618)
Q Consensus 393 ~~ 394 (618)
..
T Consensus 440 tk 441 (483)
T KOG4341|consen 440 TK 441 (483)
T ss_pred hh
Confidence 43
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=3.4e-06 Score=86.86 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=30.9
Q ss_pred CCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCC
Q 046284 89 KNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKS 166 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n 166 (618)
.+++.|++++|.++.+|. --.+|+.|.+++|..++.+|+.. .++|+.|++++|..+..+|. +|+.|++..+
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n 122 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE---SVRSLEIKGS 122 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc---ccceEEeCCC
Confidence 344444444444444431 11235555555554444444321 23555555555544433332 3444444443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.4e-08 Score=95.57 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=41.8
Q ss_pred ccCCCCCCEEeCCCCC-Cc-cCcccccCCcccceeeccccccCCcCCC------CCCCccEEeccCCCC
Q 046284 331 IACLSSLTTLNLSGNS-FE-SLPASIKQLSQLRSLHLEGCKMLQSLPE------LPLCLESLDLTGCNM 391 (618)
Q Consensus 331 l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~------l~~~L~~L~l~~c~~ 391 (618)
...+|+|.+|||++|. ++ ..-..+.+++.|++|.++.|..+ +|+ -.|+|.+|++.+|-.
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 3557888888888874 33 33345678899999999999643 232 236899999998844
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.9e-08 Score=95.01 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=108.1
Q ss_pred CCceEEEccCCCcee--ccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccC
Q 046284 89 KNLVALNLSCSKVEQ--LWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSK 165 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~ 165 (618)
..|++|||++..|+. +-..+..+.+|+.|.|.+++.-..+- .+.+-.+|+.|++++|..++..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------- 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence 359999999998874 44567889999999999987333222 4567788999999998766321
Q ss_pred CCCcccCccccCCCCCcEEecccCcCccchhhh-cc-CCCCCcEEecCCccCcc---ccchhhhCCCCCCEEEecCc-CC
Q 046284 166 SAIEEVPSSIECLTDLKKLNLKYCKRLKRISTR-FC-KLRSLVDLFLNGCVNLE---RFPEILEKMEHLERINLNKT-AI 239 (618)
Q Consensus 166 n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~-~~-~l~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~L~~n-~i 239 (618)
.+.--+.+++.|..|+|++|......-.. +. --++|..|+++||...- .+......+++|..|||+++ .+
T Consensus 251 ----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 251 ----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred ----HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 11123466777777788777654432211 11 13567777777765321 22223445677777777774 33
Q ss_pred c-cCCccCCCCCCCCEEEeccCCCccc-cCcccCCCccceEEEecCc
Q 046284 240 T-ELPSSFENLPGLEELFVEDCSKLDK-LPDNIGNLKCLFIISAVGS 284 (618)
Q Consensus 240 ~-~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~n 284 (618)
+ ..-..|.+++.|++|.++.|..+.. .--.+...++|.+|++.++
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3 2233456777788888887754321 1112445556666665543
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=2.6e-08 Score=99.63 Aligned_cols=226 Identities=17% Similarity=0.219 Sum_probs=123.5
Q ss_pred cCCCCCcEEecccCcCccchh--hhccCCCCCcEEecCCccCccc--cchhhhCCCCCCEEEecCcCCc---cCCccCCC
Q 046284 176 ECLTDLKKLNLKYCKRLKRIS--TRFCKLRSLVDLFLNGCVNLER--FPEILEKMEHLERINLNKTAIT---ELPSSFEN 248 (618)
Q Consensus 176 ~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~n~i~---~lp~~l~~ 248 (618)
..+++|+.|++..|..++... .....+++|++|+++.|..... +.....+++.++.+.+.|+.-. .+-..-..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 456777777777776555322 1234577788888887765432 2233445555555555542211 11111234
Q ss_pred CCCCCEEEeccCCCccccC--cccCCCccceEEEecCccc-ccCCc-chhhccCCCceEecCCCCCCCCCCeEeccCCCC
Q 046284 249 LPGLEELFVEDCSKLDKLP--DNIGNLKCLFIISAVGSAI-SQLPS-SSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAV 324 (618)
Q Consensus 249 l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l 324 (618)
...+.++++.+|..++... ..-..+..|+.++.+++.- +..+- .... +..+|+.|-++.|+.
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~--------------~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ--------------HCHNLQVLELSGCQQ 332 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc--------------CCCceEEEeccccch
Confidence 4445555655664443222 1112355666666655432 11111 1112 334555555555542
Q ss_pred -Cc--CCccccCCCCCCEEeCCCCCCc---cCcccccCCcccceeeccccccCCcC--------CCCCCCccEEeccCCC
Q 046284 325 -ME--IPQEIACLSSLTTLNLSGNSFE---SLPASIKQLSQLRSLHLEGCKMLQSL--------PELPLCLESLDLTGCN 390 (618)
Q Consensus 325 -~~--~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~~~~l~~l--------p~l~~~L~~L~l~~c~ 390 (618)
++ +-.--.+++.|+.+++.++... ++-..-.+++.|+.|.+++|...+.- ......|+.+.+++|+
T Consensus 333 fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 333 FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 11 2222356899999999998654 23333467999999999999866543 1234568999999999
Q ss_pred CCCcCC----CCccccccccccccccccC
Q 046284 391 MLRSLP----ELPLCLHSLNATNCNRLQS 415 (618)
Q Consensus 391 ~l~~l~----~~~~~L~~L~i~~c~~l~~ 415 (618)
.+..-. ....+|+++++.+|.....
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhhhhh
Confidence 876432 1223566666666654433
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=3.1e-08 Score=105.20 Aligned_cols=177 Identities=25% Similarity=0.304 Sum_probs=113.4
Q ss_pred CccccCCCCCcEEecccCcCccchhhhccCC-CCCcEEecCCccCccccchhhh----------CCCCCCEEEecCcCCc
Q 046284 172 PSSIECLTDLKKLNLKYCKRLKRISTRFCKL-RSLVDLFLNGCVNLERFPEILE----------KMEHLERINLNKTAIT 240 (618)
Q Consensus 172 ~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~----------~l~~L~~L~L~~n~i~ 240 (618)
|-+|..+.+|+.|.+.+|.+... -. +..+ ..|++|.-.+. +..+-..|. ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~G-L~~lr~qLe~LIC~~S--l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KG-LQELRHQLEKLICHNS--LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hh-hHHHHHhhhhhhhhcc--HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 44566778888888888875441 11 1111 12333332210 011111111 0124777788889998
Q ss_pred cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEecc
Q 046284 241 ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMR 320 (618)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~ 320 (618)
.+..++.-++.|+.|+|++|+....- .+..++.|+.||++.|.+..+|..... ++ .|+.|.++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~--------------gc-~L~~L~lr 240 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV--------------GC-KLQLLNLR 240 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchh--------------hh-hheeeeec
Confidence 88888888999999999999776543 678899999999999988877754331 12 26777777
Q ss_pred CCCCCcCCccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeecccccc
Q 046284 321 NCAVMEIPQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 321 ~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~ 370 (618)
+|.++++- ++.++.+|+.||++.|-|.... ..+..+..|+.|.|.||+.
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77766642 4566777788888877665322 2356677777888887764
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=8.3e-07 Score=85.21 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCCCCCeEeccCCCCCcC--CccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeeccccccCCcCC
Q 046284 310 GLAYLGHLDMRNCAVMEI--PQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKMLQSLP 375 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~--p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp 375 (618)
-+|++..+.+..|.+.+. -.....++.+--|+|+.++|.+.. +.+..++.|..|.+++++....+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 456677777777766653 223444666777788887777543 456677777777777777655543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=2.8e-08 Score=105.50 Aligned_cols=131 Identities=22% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEec
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLN 235 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 235 (618)
..|...+.++|.+..+..++.-++.|+.|+|++|++.+.- .+..+++|++|||++|......--...++. |..|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4677778888888888888888888888888888876654 477788888888888776543322333344 8888888
Q ss_pred CcCCccCCccCCCCCCCCEEEeccCCCcccc-CcccCCCccceEEEecCcccccCC
Q 046284 236 KTAITELPSSFENLPGLEELFVEDCSKLDKL-PDNIGNLKCLFIISAVGSAISQLP 290 (618)
Q Consensus 236 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~n~l~~~~ 290 (618)
+|.++++-. +.++.+|+.||+++|-+.+.- -..+..+..|+.|+|.||.+-.-|
T Consensus 241 nN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888887643 678888888888887544321 122455677888888888765443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=55.72 Aligned_cols=39 Identities=36% Similarity=0.612 Sum_probs=22.1
Q ss_pred CCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCc
Q 046284 313 YLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLP 351 (618)
Q Consensus 313 ~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 351 (618)
+|++|++++|++.++|..++++++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666555566666666666666665544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.2e-05 Score=55.58 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred CceEEEccCCCceeccccccccccCcEEeccCCCCCcccC
Q 046284 90 NLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP 129 (618)
Q Consensus 90 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp 129 (618)
+|++|++++|+|++++..+.++++|+.|++++|+ +++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4566666666666665555666666666666664 44433
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1.7e-06 Score=73.88 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCEEEeccCCCc--cccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCc
Q 046284 252 LEELFVEDCSKL--DKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQ 329 (618)
Q Consensus 252 L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~ 329 (618)
+..++|+.|++. ...+..+.....|+..++++|.+..+|..+. ..++.++.|++++|.+.++|.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--------------~kf~t~t~lNl~~neisdvPe 94 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--------------IKFPTATTLNLANNEISDVPE 94 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh--------------hccchhhhhhcchhhhhhchH
Confidence 334455555432 1223344555667777888888887777654 156678888899999999999
Q ss_pred cccCCCCCCEEeCCCCCCccCcccccCCcccceeecccccc
Q 046284 330 EIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 330 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 370 (618)
.+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|..
T Consensus 95 E~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred HHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 99999999999999999998888887788888888888764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=6.8e-06 Score=79.08 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=97.5
Q ss_pred CCCCCcEEecCCccCcc--ccchhhhCCCCCCEEEecCcCCccCCccC-CCCCCCCEEEeccCCCc-cccCcccCCCccc
Q 046284 201 KLRSLVDLFLNGCVNLE--RFPEILEKMEHLERINLNKTAITELPSSF-ENLPGLEELFVEDCSKL-DKLPDNIGNLKCL 276 (618)
Q Consensus 201 ~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L 276 (618)
..+.++.|||.+|.+.. .+...+.+||.|+.|+++.|.+...-..+ ..+.+|+.|.|.|.... ......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34566667776665543 33445566667777777776665322222 24456666666664433 2223334455556
Q ss_pred eEEEecCcccccCCcc---hhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCc--
Q 046284 277 FIISAVGSAISQLPSS---SVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLP-- 351 (618)
Q Consensus 277 ~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp-- 351 (618)
+.|.++.|.+..+-.. .-...+.+.++.+. +.+..+..+-|++.. -+|++..+.+..|.+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~-----~c~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQL-----PCLEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcC-----CcHHHHHHHHHhHHh------hcccchheeeecCcccchhhc
Confidence 6666665543322111 00011122222211 112222222222222 2577888888888777553
Q ss_pred ccccCCcccceeeccccccCCcCC---C--CCCCccEEeccCCCCCCcCCC
Q 046284 352 ASIKQLSQLRSLHLEGCKMLQSLP---E--LPLCLESLDLTGCNMLRSLPE 397 (618)
Q Consensus 352 ~~l~~l~~L~~L~L~~~~~l~~lp---~--l~~~L~~L~l~~c~~l~~l~~ 397 (618)
.....++.+..|.|+.+++ .++. + -+++|..|.++++|....+..
T Consensus 218 k~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred ccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 4456677777888887763 3322 2 256888899999888776654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=3.1e-05 Score=86.48 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=83.5
Q ss_pred cccCcEEeccCCCCCcc-cC--CCCCCCCCcEEeccCCCC----CCcCCCCCCCccEEEccCCCCcccCccccCCCCCcE
Q 046284 111 FKYLSALSFEGCKSLRS-FP--SNLHFVCPVTINFSYCVN----LIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKK 183 (618)
Q Consensus 111 l~~L~~L~Ls~~~~l~~-lp--~~~~l~~L~~L~l~~~~~----l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~ 183 (618)
-.+|++||++|...+.. .| -...+|+|+.|.++|-.. ...+-..+++|..||+++++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45788888888654322 11 224578888888887322 223445667888888888888887 67888888888
Q ss_pred EecccCcCcc-chhhhccCCCCCcEEecCCccCcccc------chhhhCCCCCCEEEecCcCCc
Q 046284 184 LNLKYCKRLK-RISTRFCKLRSLVDLFLNGCVNLERF------PEILEKMEHLERINLNKTAIT 240 (618)
Q Consensus 184 L~L~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~------~~~~~~l~~L~~L~L~~n~i~ 240 (618)
|.+.+=.+.. ..-..+..+++|+.||+|........ -+.-..+|+|+.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8887755443 11123556888888888875443322 122334677888888877666
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.56 E-value=2.1e-05 Score=74.83 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=73.9
Q ss_pred hhhCCCCCCEEEecCcCCc-cCCc----cCCCCCCCCEEEeccCCCccccCc-------------ccCCCccceEEEecC
Q 046284 222 ILEKMEHLERINLNKTAIT-ELPS----SFENLPGLEELFVEDCSKLDKLPD-------------NIGNLKCLFIISAVG 283 (618)
Q Consensus 222 ~~~~l~~L~~L~L~~n~i~-~lp~----~l~~l~~L~~L~L~~~~~~~~lp~-------------~l~~l~~L~~L~l~~ 283 (618)
.+-+++.|+..+|++|.+. +.|. .++.-+.|++|.+++|..-..-.. -..+-+.|+...+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3445556666666666555 2222 234455666666666533211111 123446677777777
Q ss_pred cccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc------CCccccCCCCCCEEeCCCCCCccC-----cc
Q 046284 284 SAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME------IPQEIACLSSLTTLNLSGNSFESL-----PA 352 (618)
Q Consensus 284 n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~------~p~~l~~l~~L~~L~Ls~n~l~~l-----p~ 352 (618)
|++...+....... .+.-..|+++.+..|.|.. +-..+..+.+|+.|||..|.++.. ..
T Consensus 167 NRlengs~~~~a~~----------l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 167 NRLENGSKELSAAL----------LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred chhccCcHHHHHHH----------HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 77765554322100 0112456666666776653 122345577788888888877622 23
Q ss_pred cccCCcccceeecccccc
Q 046284 353 SIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 353 ~l~~l~~L~~L~L~~~~~ 370 (618)
.+..-+.|++|.+.+|-.
T Consensus 237 al~~W~~lrEL~lnDCll 254 (388)
T COG5238 237 ALCEWNLLRELRLNDCLL 254 (388)
T ss_pred Hhcccchhhhccccchhh
Confidence 344455677777777743
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.51 E-value=2.2e-05 Score=74.69 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=58.0
Q ss_pred CCCCEEEecCcCCcc--C----CccCCCCCCCCEEEeccCCCcc----ccCcccCCCccceEEEecCcccccCCcch-hh
Q 046284 227 EHLERINLNKTAITE--L----PSSFENLPGLEELFVEDCSKLD----KLPDNIGNLKCLFIISAVGSAISQLPSSS-VA 295 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~--l----p~~l~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~ 295 (618)
.+|+++.+..|.|.. + -..+..+.+|+.|++.+|.++. .+...+...+.|+.|.+.+|-++.-.... +.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 455555555555541 0 0123445566666666654432 12223344445566666665544322211 11
Q ss_pred ccCCCceEecCCCCCCCCCCeEeccCCCCCc-------CCcc-ccCCCCCCEEeCCCCCCccCc
Q 046284 296 YSNRLGVLYFSRCKGLAYLGHLDMRNCAVME-------IPQE-IACLSSLTTLNLSGNSFESLP 351 (618)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-------~p~~-l~~l~~L~~L~Ls~n~l~~lp 351 (618)
..+. ...++|..|...+|.+.. ++.. -..+|-|..|.+.||.+....
T Consensus 265 ~f~e---------~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 265 RFNE---------KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred Hhhh---------hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 1110 034566666666665443 1111 134788888999999888554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00014 Score=66.52 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCcCCCcCceEEEeCCCCCCccCCCC--CCCCceEEEccCCCceecc--ccccccccCcEEeccCCCCCcccC-----CC
Q 046284 61 GLDYLPKKLRYLHWDTYPLRTLPSNF--KPKNLVALNLSCSKVEQLW--EGEKNFKYLSALSFEGCKSLRSFP-----SN 131 (618)
Q Consensus 61 ~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~lp-----~~ 131 (618)
.+..+ +.|.+|.+++|.|..+.... -+++|..|.|.+|.|..+. ..+..+++|++|.+-+|+ ...-+ .+
T Consensus 59 ~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl 136 (233)
T KOG1644|consen 59 NLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVL 136 (233)
T ss_pred cCCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEE
Confidence 34444 47888888888888887766 4677888888888887764 456678888888888876 33322 45
Q ss_pred CCCCCCcEEeccCC
Q 046284 132 LHFVCPVTINFSYC 145 (618)
Q Consensus 132 ~~l~~L~~L~l~~~ 145 (618)
..+++|+.||+.+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 57788888888764
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=5.5e-06 Score=70.78 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=59.6
Q ss_pred CceEEEeCCCCCCccCCCC--CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCC
Q 046284 68 KLRYLHWDTYPLRTLPSNF--KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYC 145 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~ 145 (618)
+|+..++++|.++++|..| .++.++.|+|++|+|+++|..+..++.|+.|+++.|+.......+..+.++-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 6777788888888888877 55678888888888888887788888888888888875544445555667777777665
Q ss_pred C
Q 046284 146 V 146 (618)
Q Consensus 146 ~ 146 (618)
.
T Consensus 134 a 134 (177)
T KOG4579|consen 134 A 134 (177)
T ss_pred c
Confidence 4
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00029 Score=64.51 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=40.4
Q ss_pred CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCc--cCCCCCCCCEEEe
Q 046284 180 DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPS--SFENLPGLEELFV 257 (618)
Q Consensus 180 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L 257 (618)
....+||++|.+... + .|..++.|..|.+++|.++..-|..-.-+++|..|.+.+|.|.++.. .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-D-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-c-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344455555443221 1 13445555556665555555555544455556666666666654422 2344555555555
Q ss_pred ccCC
Q 046284 258 EDCS 261 (618)
Q Consensus 258 ~~~~ 261 (618)
-+|+
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5554
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=5.7e-05 Score=84.42 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCCCcEEecccCcCccc-hhhhc-cCCCCCcEEecCCccCc-cccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCE
Q 046284 178 LTDLKKLNLKYCKRLKR-ISTRF-CKLRSLVDLFLNGCVNL-ERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEE 254 (618)
Q Consensus 178 l~~L~~L~L~~~~~~~~-l~~~~-~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 254 (618)
-.+|+.|++++...... -|..+ ..+|+|+.|.+.+-... +.+.....++++|..||+++++++.+ ..++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36788888887543322 22222 34788888888774443 23445566777888888888887776 55677777777
Q ss_pred EEeccCCCcc-ccCcccCCCccceEEEecCc
Q 046284 255 LFVEDCSKLD-KLPDNIGNLKCLFIISAVGS 284 (618)
Q Consensus 255 L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~n 284 (618)
|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 7766533221 11112334555555555443
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=5.6e-05 Score=82.35 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCCCCcEEecccCcCcc-chhhhcc-CCCCCcEEecCCccC-cc-ccchhhhCCCCCCEEEecCc
Q 046284 177 CLTDLKKLNLKYCKRLK-RISTRFC-KLRSLVDLFLNGCVN-LE-RFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~-~l~~~~~-~l~~L~~L~L~~~~~-~~-~~~~~~~~l~~L~~L~L~~n 237 (618)
.+.+|+.|++++|...+ ..-..+. .+++|++|.+.+|.. .. .+-.....+++|++|+++++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 34555566665555222 1111121 245555555555552 11 12223334445555555543
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=9.8e-05 Score=80.43 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=87.6
Q ss_pred CCCCCcEEecccCcCccc--hhhhccCCCCCcEEecCCc-cCcccc----chhhhCCCCCCEEEecCcC-CccC--CccC
Q 046284 177 CLTDLKKLNLKYCKRLKR--ISTRFCKLRSLVDLFLNGC-VNLERF----PEILEKMEHLERINLNKTA-ITEL--PSSF 246 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~~--l~~~~~~l~~L~~L~L~~~-~~~~~~----~~~~~~l~~L~~L~L~~n~-i~~l--p~~l 246 (618)
.++.|+.|.+.+|..... +-.....++.|+.|++++| ...... ......+++|+.|+++.+. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777777765554 3344556777888887763 222211 1233445677777777765 4422 1112
Q ss_pred CCCCCCCEEEeccCCCc--cccCcccCCCccceEEEecCcccc---cCCcchhhccCCCceEecCCCCCCCCCCeEeccC
Q 046284 247 ENLPGLEELFVEDCSKL--DKLPDNIGNLKCLFIISAVGSAIS---QLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRN 321 (618)
Q Consensus 247 ~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~ 321 (618)
..+++|+.|.+.+|... ..+-.....++.|+.|+++++... .+... ...+++++.+.+..+.+++.++.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 23667777777777632 122223345666777777766433 11111 2235555555555444445555555544
Q ss_pred CCCC---c-CCccccCCCCCCEEeCCCCC
Q 046284 322 CAVM---E-IPQEIACLSSLTTLNLSGNS 346 (618)
Q Consensus 322 n~l~---~-~p~~l~~l~~L~~L~Ls~n~ 346 (618)
+... . ....+..++.|+.+.+..+.
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3321 1 11223445555555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.002 Score=61.71 Aligned_cols=86 Identities=27% Similarity=0.313 Sum_probs=57.4
Q ss_pred CCCCCCCeEeccCC--CCCc-CCccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeeccccccCCc------CCCC
Q 046284 309 KGLAYLGHLDMRNC--AVME-IPQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKMLQS------LPEL 377 (618)
Q Consensus 309 ~~l~~L~~L~L~~n--~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~------lp~l 377 (618)
+.+++|++|.++.| .+.. ++.....+|+|++|++++|++..+. ..+..+.+|..|++.+|.-.+- +-.+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 36778888888888 4433 4444556699999999999887432 2467788888889988875441 1124
Q ss_pred CCCccEEeccCCCCCCc
Q 046284 378 PLCLESLDLTGCNMLRS 394 (618)
Q Consensus 378 ~~~L~~L~l~~c~~l~~ 394 (618)
.++|++|+-.++..-+.
T Consensus 142 l~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEA 158 (260)
T ss_pred hhhhccccccccCCccc
Confidence 56777777666554443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.45 E-value=0.016 Score=50.49 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=39.8
Q ss_pred ccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCC
Q 046284 175 IECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPS-SFENLPGLE 253 (618)
Q Consensus 175 i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~ 253 (618)
+.++++|+.+.+.. .....-...|..+++|+.+.+..+ ....-...+.++++|+.+.+.. .+..++. .+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34445555555543 222223334555555555555542 2222333455555555555543 3333322 344455555
Q ss_pred EEEeccCCCccccCcccCCCccceEEEecCcccccCCcchh
Q 046284 254 ELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSV 294 (618)
Q Consensus 254 ~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 294 (618)
.+.+..+ ....-...+.++ .|+.+.+.. .+..++...+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F 122 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF 122 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence 5555432 222222334444 555554443 3444444444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.44 E-value=0.02 Score=49.82 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=59.6
Q ss_pred ccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC--CCCCceEEEc
Q 046284 19 NLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF--KPKNLVALNL 96 (618)
Q Consensus 19 ~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L 96 (618)
.+...+|.++++|+.+.+... . ..++...+....+|+.+++.++ +..++... ..++|+.+.+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~-~--------------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNT-I--------------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST-----------------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred EECHHHHhCCCCCCEEEECCC-e--------------eEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 466788999999999988752 2 5666666665568888888774 77777654 5668888888
Q ss_pred cCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccC
Q 046284 97 SCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSY 144 (618)
Q Consensus 97 ~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~ 144 (618)
.. .+..++ ..+..+++|+.+++..+ +..++ .+.+. +|+.+.+..
T Consensus 66 ~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 66 PN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cc-cccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 76 566554 45667888888888654 34333 34454 666666554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0014 Score=62.74 Aligned_cols=83 Identities=24% Similarity=0.279 Sum_probs=45.9
Q ss_pred CCCCCcEEecccCcCccchhhhccCCCCCcEEecCCc--cCccccchhhhCCCCCCEEEecCcCCccCC--ccCCCCCCC
Q 046284 177 CLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGC--VNLERFPEILEKMEHLERINLNKTAITELP--SSFENLPGL 252 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L 252 (618)
.+..|+.|++.++..++.. .+-.+++|++|.++.| +....++.....+++|++|++++|+|+.+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3455555556555443321 1334667777777777 555555555556677777777777766421 113344455
Q ss_pred CEEEeccCC
Q 046284 253 EELFVEDCS 261 (618)
Q Consensus 253 ~~L~L~~~~ 261 (618)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555553
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00048 Score=66.09 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccc
Q 046284 313 YLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 313 ~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 369 (618)
+.+.|+..+|.+.++. ....++.|+.|.|+-|+|+++. .+..|++|++|+|..|.
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC 74 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc
Confidence 3444444444444431 1123444555555555554443 24445555555555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.00064 Score=65.22 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=68.0
Q ss_pred CccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc--
Q 046284 28 MSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-- 105 (618)
Q Consensus 28 l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-- 105 (618)
+.+.+.|++.|+.+ ..+. -...+ ..|++|.++-|.|+++...-.+++|++|.|..|.|..+.
T Consensus 18 l~~vkKLNcwg~~L--------------~DIs-ic~kM-p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL--------------DDIS-ICEKM-PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCc--------------cHHH-HHHhc-ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH
Confidence 55667777777553 1111 11233 378888888888888877778888999999999888875
Q ss_pred ccccccccCcEEeccCCCCCcccC------CCCCCCCCcEEe
Q 046284 106 EGEKNFKYLSALSFEGCKSLRSFP------SNLHFVCPVTIN 141 (618)
Q Consensus 106 ~~~~~l~~L~~L~Ls~~~~l~~lp------~~~~l~~L~~L~ 141 (618)
..++++++|+.|.|..|+-...-+ .+..+++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 456888888888888887555443 233466666665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.0089 Score=34.30 Aligned_cols=19 Identities=47% Similarity=0.782 Sum_probs=10.5
Q ss_pred CCEEeCCCCCCccCccccc
Q 046284 337 LTTLNLSGNSFESLPASIK 355 (618)
Q Consensus 337 L~~L~Ls~n~l~~lp~~l~ 355 (618)
|++|+|++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555566665555554443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.59 E-value=0.019 Score=32.94 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=11.2
Q ss_pred CceEEEccCCCceecccccc
Q 046284 90 NLVALNLSCSKVEQLWEGEK 109 (618)
Q Consensus 90 ~L~~L~L~~n~i~~l~~~~~ 109 (618)
+|++||+++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666665554443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.036 Score=29.49 Aligned_cols=15 Identities=53% Similarity=0.705 Sum_probs=5.3
Q ss_pred CCCEEeCCCCCCccC
Q 046284 336 SLTTLNLSGNSFESL 350 (618)
Q Consensus 336 ~L~~L~Ls~n~l~~l 350 (618)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.42 E-value=0.0015 Score=70.16 Aligned_cols=36 Identities=25% Similarity=0.097 Sum_probs=17.4
Q ss_pred CcEEecccCcCccch----hhhccCCCCCcEEecCCccCc
Q 046284 181 LKKLNLKYCKRLKRI----STRFCKLRSLVDLFLNGCVNL 216 (618)
Q Consensus 181 L~~L~L~~~~~~~~l----~~~~~~l~~L~~L~L~~~~~~ 216 (618)
+..|.+.+|.+...- -..+.....|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 555566665544322 222334455555555555444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.25 E-value=0.083 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=4.0
Q ss_pred ceEEEeCCCCCCc
Q 046284 69 LRYLHWDTYPLRT 81 (618)
Q Consensus 69 L~~L~l~~~~l~~ 81 (618)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.19 E-value=0.074 Score=49.17 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCCCCccCCCC-CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CC-CCCCCCcEEeccCCCCCCc
Q 046284 76 TYPLRTLPSNF-KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SN-LHFVCPVTINFSYCVNLIE 150 (618)
Q Consensus 76 ~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~-~~l~~L~~L~l~~~~~l~~ 150 (618)
.|..-++|... .-..++.+|-+++.|.... +.+.+++.++.|.+.+|..+.... .+ .-.++|+.|++++|..+++
T Consensus 87 ~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 87 YNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 33333556553 4456889999999888754 567788889999999998776532 11 1568999999999977632
Q ss_pred CCCCCCCccEEEccCCCCcccCccccCCCCCcEEeccc
Q 046284 151 FPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKY 188 (618)
Q Consensus 151 ~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~ 188 (618)
. --..+..+++|+.|.+.+
T Consensus 167 ~-------------------GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 167 G-------------------GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred h-------------------HHHHHHHhhhhHHHHhcC
Confidence 1 122455667777777765
No 77
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=89.71 E-value=0.23 Score=27.58 Aligned_cols=19 Identities=63% Similarity=1.060 Sum_probs=17.1
Q ss_pred CceEEEccCCCceeccccc
Q 046284 90 NLVALNLSCSKVEQLWEGE 108 (618)
Q Consensus 90 ~L~~L~L~~n~i~~l~~~~ 108 (618)
+|++|+|.+++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5899999999999999875
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.10 E-value=0.0037 Score=67.08 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=43.5
Q ss_pred ccCccccCCCCCcEEecccCcCccch----hhhccCC-CCCcEEecCCccCccc----cchhhhCCCCCCEEEecCcCCc
Q 046284 170 EVPSSIECLTDLKKLNLKYCKRLKRI----STRFCKL-RSLVDLFLNGCVNLER----FPEILEKMEHLERINLNKTAIT 240 (618)
Q Consensus 170 ~l~~~i~~l~~L~~L~L~~~~~~~~l----~~~~~~l-~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~n~i~ 240 (618)
.+...+.....|..|++++|.+...- -..+... ..|++|++..|..... +.+.+.....++.++++.|.+.
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 34455667788888888887765321 1122222 5567777777766543 3445555667777777777764
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.54 E-value=0.37 Score=28.66 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=14.4
Q ss_pred CCCCCEEeCCCCCCccCccc
Q 046284 334 LSSLTTLNLSGNSFESLPAS 353 (618)
Q Consensus 334 l~~L~~L~Ls~n~l~~lp~~ 353 (618)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677788888877777754
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.54 E-value=0.37 Score=28.66 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=14.4
Q ss_pred CCCCCEEeCCCCCCccCccc
Q 046284 334 LSSLTTLNLSGNSFESLPAS 353 (618)
Q Consensus 334 l~~L~~L~Ls~n~l~~lp~~ 353 (618)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677788888877777754
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.013 Score=55.15 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=47.7
Q ss_pred hhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCC-CCCCceEEEccCCCc
Q 046284 23 GAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKV 101 (618)
Q Consensus 23 ~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i 101 (618)
..+......+.||++.|+. ..+-..+.-+ ..|..|+++.|.+..+|.++ ....++.+++..|..
T Consensus 36 ~ei~~~kr~tvld~~s~r~--------------vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRL--------------VNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred hhhhccceeeeehhhhhHH--------------HhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch
Confidence 3444555556666665543 2332223222 35555666666666666665 455566666666666
Q ss_pred eeccccccccccCcEEeccCCC
Q 046284 102 EQLWEGEKNFKYLSALSFEGCK 123 (618)
Q Consensus 102 ~~l~~~~~~l~~L~~L~Ls~~~ 123 (618)
+..|.+++..++++.+++.++.
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhCCccccccCCcchhhhccCc
Confidence 6666666666666666665554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=0.22 Score=46.11 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=54.0
Q ss_pred CCCCEEeCCCCCCccC-cccccCCcccceeeccccccCC-----cCCCCCCCccEEeccCCCCCCcCC----CCcccccc
Q 046284 335 SSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCKMLQ-----SLPELPLCLESLDLTGCNMLRSLP----ELPLCLHS 404 (618)
Q Consensus 335 ~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~-----~lp~l~~~L~~L~l~~c~~l~~l~----~~~~~L~~ 404 (618)
..++.+|-+++.|... -+.+..+++++.|.+.+|.... .+..+.++|+.|++++|+.+++-. ..+.+|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4567777777777633 2457788889999999998654 344567899999999999877542 12456666
Q ss_pred ccccccc
Q 046284 405 LNATNCN 411 (618)
Q Consensus 405 L~i~~c~ 411 (618)
|.+.+++
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 6666654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.51 E-value=0.56 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.7
Q ss_pred ccceEEEecCcccccCCcchh
Q 046284 274 KCLFIISAVGSAISQLPSSSV 294 (618)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~~ 294 (618)
++|+.|++++|.++.+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.51 E-value=0.56 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.7
Q ss_pred ccceEEEecCcccccCCcchh
Q 046284 274 KCLFIISAVGSAISQLPSSSV 294 (618)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~~ 294 (618)
++|+.|++++|.++.+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.65 E-value=0.033 Score=52.44 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccC
Q 046284 310 GLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
.++.|..|+++.|.+.-+|.+++....++.+++..|+.+..|.+.+..++++++++.+++..
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 34556667777777777888888888888888888888888888888888888888887643
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.67 E-value=1.1 Score=26.68 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=9.7
Q ss_pred CceEEEeCCCCCCccCC
Q 046284 68 KLRYLHWDTYPLRTLPS 84 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~ 84 (618)
+|++|+.++|.++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.55 E-value=1.4 Score=26.30 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=13.4
Q ss_pred CCCCEEeCCCCCCccCcc
Q 046284 335 SSLTTLNLSGNSFESLPA 352 (618)
Q Consensus 335 ~~L~~L~Ls~n~l~~lp~ 352 (618)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467778888888877774
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.21 E-value=2.8 Score=25.10 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=11.8
Q ss_pred CCCceEEEccCCCceec
Q 046284 88 PKNLVALNLSCSKVEQL 104 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~l 104 (618)
+.+|++|++++|+|+++
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777777665
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.67 E-value=5.4 Score=23.61 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=8.0
Q ss_pred ccCcEEeccCCCCCc
Q 046284 112 KYLSALSFEGCKSLR 126 (618)
Q Consensus 112 ~~L~~L~Ls~~~~l~ 126 (618)
++|++|+|++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555443
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.95 E-value=3.7 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=4.6
Q ss_pred CCCcEEecccCc
Q 046284 179 TDLKKLNLKYCK 190 (618)
Q Consensus 179 ~~L~~L~L~~~~ 190 (618)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 344444444444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.94 E-value=4.1 Score=43.66 Aligned_cols=67 Identities=21% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCCCCccEEEccCCCCcccCc---cccCCCCCcEEecccCcCccchhhhccC--CCCCcEEecCCccCcccc
Q 046284 153 LISGKVTSLNLSKSAIEEVPS---SIECLTDLKKLNLKYCKRLKRISTRFCK--LRSLVDLFLNGCVNLERF 219 (618)
Q Consensus 153 ~~~~~L~~L~L~~n~i~~l~~---~i~~l~~L~~L~L~~~~~~~~l~~~~~~--l~~L~~L~L~~~~~~~~~ 219 (618)
...+.+..++|++|++..+.. -....++|+.|+|++|...-....++.+ ...|++|.+.||++.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 344566677777777655432 2244567777777776221111111222 334566666666655433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.03 E-value=8 Score=41.56 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCCCCCeEeccCCCCCcC---CccccCCCCCCEEeCCCC--CCccCcccc--cCCcccceeeccccccCCc
Q 046284 310 GLAYLGHLDMRNCAVMEI---PQEIACLSSLTTLNLSGN--SFESLPASI--KQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~---p~~l~~l~~L~~L~Ls~n--~l~~lp~~l--~~l~~L~~L~L~~~~~l~~ 373 (618)
+.+.+..++|++|++..+ .......|+|+.|+|++| .+...+ ++ -....|++|-+.||+.-+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 344455555555555442 111223466666666666 333222 11 1234566666666665443
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.77 E-value=18 Score=21.83 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=9.7
Q ss_pred CCCCEEeCCCCCCc
Q 046284 335 SSLTTLNLSGNSFE 348 (618)
Q Consensus 335 ~~L~~L~Ls~n~l~ 348 (618)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777664
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.81 E-value=2.9e+02 Score=29.63 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=16.4
Q ss_pred CCEEeCCCCCCccCc----ccccCCcccceeeccccc
Q 046284 337 LTTLNLSGNSFESLP----ASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 337 L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~~~~ 369 (618)
++.+.++.|.+..-+ ..+..-+.+..|++++|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG 451 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCC
Confidence 445555555554222 122344556666666664
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.38 E-value=45 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=31.1
Q ss_pred ecccccccccCchhhccCccceEEEEeCCCCCCC
Q 046284 11 DLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPS 44 (618)
Q Consensus 11 dls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~ 44 (618)
||++|++..+++..|..+++|+.|+|++|++-.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 7899999999999999999999999999997533
No 96
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.31 E-value=1.4e+02 Score=20.20 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCCcCceEEEeCCCCCCccCCCCCCCCceEEEcc
Q 046284 64 YLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLS 97 (618)
Q Consensus 64 ~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~ 97 (618)
.+|.++++|.+..+--..+....-+.+|++|.+.
T Consensus 9 ~iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 9 SIPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eeCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 3456777777733322233333233455555553
Done!