Query 046284
Match_columns 618
No_of_seqs 847 out of 4577
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-38 6.3E-43 363.4 32.8 382 9-392 130-551 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-38 6.7E-43 363.2 29.2 408 9-420 204-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.5E-37 1.2E-41 344.2 36.3 379 8-401 36-522 (606)
4 4eco_A Uncharacterized protein 100.0 5.8E-39 2E-43 359.5 21.2 403 6-411 82-598 (636)
5 3t6q_A CD180 antigen; protein- 100.0 6.1E-36 2.1E-40 334.1 32.9 399 9-410 61-557 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 1.4E-36 4.8E-41 346.6 25.3 400 7-411 325-838 (876)
7 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-36 2.5E-40 345.4 30.4 402 9-430 28-556 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-35 1.2E-39 327.8 33.3 380 9-411 36-556 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-35 1.1E-39 328.1 32.7 360 8-393 14-462 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-35 1.1E-39 324.3 31.4 431 9-463 30-509 (549)
11 4eco_A Uncharacterized protein 100.0 1.3E-35 4.4E-40 332.3 24.4 360 14-393 192-601 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 8.5E-35 2.9E-39 322.3 28.3 402 9-432 32-529 (570)
13 1jl5_A Outer protein YOPM; leu 100.0 4.9E-34 1.7E-38 306.1 31.5 387 9-431 15-426 (454)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-33 4.5E-38 319.5 36.4 124 9-146 29-156 (680)
15 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-33 4E-38 319.9 35.9 382 9-409 8-489 (680)
16 4ecn_A Leucine-rich repeat pro 100.0 1.1E-34 3.8E-39 331.0 26.4 361 14-394 434-842 (876)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-34 1.6E-38 312.9 25.2 363 9-394 25-483 (520)
18 2z63_A TOLL-like receptor 4, v 100.0 7.2E-34 2.5E-38 314.8 27.0 380 9-411 56-529 (570)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-32 5.7E-37 317.3 37.3 365 5-390 4-462 (844)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-33 5.8E-38 308.4 25.6 376 8-411 3-479 (520)
21 1o6v_A Internalin A; bacterial 100.0 2.5E-32 8.4E-37 294.8 29.5 309 68-392 69-388 (466)
22 3v47_A TOLL-like receptor 5B a 100.0 2.4E-32 8.3E-37 294.0 28.6 355 10-396 15-412 (455)
23 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-33 1.3E-37 307.6 22.8 367 9-409 54-482 (549)
24 1jl5_A Outer protein YOPM; leu 100.0 2.5E-32 8.4E-37 292.9 26.5 358 21-426 4-382 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-32 9.5E-37 301.6 27.4 362 9-393 56-511 (562)
26 4fmz_A Internalin; leucine ric 100.0 3.9E-31 1.3E-35 274.1 26.9 304 23-369 38-344 (347)
27 3v47_A TOLL-like receptor 5B a 100.0 1.3E-30 4.3E-35 280.6 30.3 341 8-376 33-413 (455)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-30 4.6E-35 292.0 29.8 126 8-148 55-186 (635)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-30 4E-35 280.1 26.9 308 22-371 35-352 (457)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-30 5.9E-35 287.2 27.9 327 9-373 80-512 (562)
31 1o6v_A Internalin A; bacterial 100.0 1.5E-30 5.1E-35 280.9 26.6 332 9-372 50-389 (466)
32 4fmz_A Internalin; leucine ric 100.0 6.1E-30 2.1E-34 265.1 27.6 298 67-391 44-345 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 7.3E-30 2.5E-34 276.4 29.2 288 67-391 32-332 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-29 3.7E-34 272.6 29.1 302 63-392 39-352 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 1.8E-29 6.2E-34 266.0 25.5 302 27-390 43-350 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 2.2E-29 7.6E-34 265.3 25.4 293 68-409 46-348 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 1.2E-28 4.1E-33 266.9 25.7 310 9-370 15-332 (477)
38 3oja_B Anopheles plasmodium-re 100.0 1.4E-28 4.7E-33 273.7 25.9 300 27-369 49-356 (597)
39 3oja_B Anopheles plasmodium-re 100.0 1.4E-28 4.7E-33 273.7 25.3 298 67-392 51-358 (597)
40 1xku_A Decorin; proteoglycan, 100.0 6.4E-27 2.2E-31 240.7 28.6 282 68-389 32-329 (330)
41 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-27 8.7E-32 243.9 25.2 280 68-369 34-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 1.3E-26 4.4E-31 238.4 27.6 274 89-407 31-323 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-27 1.6E-31 241.8 24.3 260 89-370 33-306 (332)
44 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-26 4.8E-31 259.3 29.9 364 9-392 80-580 (635)
45 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-27 7.9E-32 242.0 15.2 246 89-372 50-305 (313)
46 1z7x_W Ribonuclease inhibitor; 99.9 6.4E-29 2.2E-33 267.7 1.5 337 7-370 5-410 (461)
47 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-25 7.7E-30 246.3 28.1 259 69-374 42-300 (622)
48 1ogq_A PGIP-2, polygalacturona 99.9 8.8E-27 3E-31 237.7 14.6 235 157-392 51-304 (313)
49 3g06_A SSPH2 (leucine-rich rep 99.9 6E-25 2E-29 242.9 27.1 267 29-357 40-307 (622)
50 4fcg_A Uncharacterized protein 99.9 8.9E-26 3.1E-30 231.7 18.4 221 68-290 82-317 (328)
51 2z66_A Variable lymphocyte rec 99.9 1.7E-25 5.7E-30 227.5 17.6 243 70-349 10-262 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 3.1E-25 1.1E-29 230.3 17.7 272 68-373 32-316 (353)
53 4fcg_A Uncharacterized protein 99.9 6E-25 2.1E-29 225.5 18.3 216 179-411 81-309 (328)
54 1z7x_W Ribonuclease inhibitor; 99.9 7.6E-27 2.6E-31 251.5 3.8 236 156-392 113-411 (461)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-24 7.8E-29 216.8 18.7 201 70-292 14-219 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-25 3.8E-30 230.1 7.4 241 88-373 33-277 (317)
57 2z66_A Variable lymphocyte rec 99.9 6.6E-24 2.3E-28 215.7 18.9 201 67-289 28-238 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 4E-23 1.4E-27 221.1 25.0 242 68-347 44-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 7.7E-23 2.6E-27 219.6 25.4 243 68-348 55-303 (452)
60 2z80_A TOLL-like receptor 2, v 99.9 3.9E-23 1.3E-27 214.4 21.0 237 157-394 53-316 (353)
61 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-23 1.2E-27 208.0 18.3 220 138-372 14-239 (285)
62 3ogk_B Coronatine-insensitive 99.9 8.9E-25 3.1E-29 242.9 6.6 301 68-369 165-524 (592)
63 3zyj_A Leucine-rich repeat-con 99.9 2.8E-22 9.6E-27 214.4 24.2 239 137-392 45-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 2.8E-22 9.7E-27 215.2 24.0 237 137-391 56-302 (452)
65 1wwl_A Monocyte differentiatio 99.9 1E-24 3.6E-29 222.3 3.8 216 158-391 65-308 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-24 1.6E-28 217.9 6.4 212 68-287 35-250 (317)
67 3oja_A Leucine-rich immune mol 99.9 4.1E-23 1.4E-27 223.3 13.2 235 90-369 35-273 (487)
68 1wwl_A Monocyte differentiatio 99.9 4.6E-24 1.6E-28 217.5 3.9 245 68-371 44-309 (312)
69 2z62_A TOLL-like receptor 4, v 99.9 1.2E-21 4E-26 196.0 20.5 213 148-371 19-237 (276)
70 2xwt_C Thyrotropin receptor; s 99.9 8E-22 2.7E-26 192.8 16.4 205 147-369 22-237 (239)
71 1p9a_G Platelet glycoprotein I 99.9 3.3E-21 1.1E-25 194.0 21.2 196 157-370 11-207 (290)
72 2o6q_A Variable lymphocyte rec 99.9 9.4E-21 3.2E-25 188.8 21.6 198 157-370 17-217 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 5.5E-21 1.9E-25 191.1 18.6 219 71-348 11-237 (276)
74 3oja_A Leucine-rich immune mol 99.9 2.1E-21 7.1E-26 210.0 16.5 213 156-392 34-250 (487)
75 2p1m_B Transport inhibitor res 99.9 3E-23 1E-27 230.7 -0.7 386 22-411 59-517 (594)
76 3ogk_B Coronatine-insensitive 99.8 2E-22 6.7E-27 224.0 5.1 301 67-368 192-548 (592)
77 2o6q_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 180.8 22.1 196 68-286 17-217 (270)
78 1p9a_G Platelet glycoprotein I 99.8 8.6E-20 3E-24 183.6 21.2 195 68-286 11-207 (290)
79 2p1m_B Transport inhibitor res 99.8 1.1E-22 3.8E-27 226.1 -0.7 351 24-391 100-518 (594)
80 2xwt_C Thyrotropin receptor; s 99.8 2.4E-20 8.3E-25 182.2 15.4 205 167-391 22-238 (239)
81 3rfs_A Internalin B, repeat mo 99.8 1.1E-20 3.9E-25 188.4 13.0 140 199-358 105-246 (272)
82 1h6u_A Internalin H; cell adhe 99.8 9E-20 3.1E-24 185.2 19.0 188 157-370 42-229 (308)
83 3rfs_A Internalin B, repeat mo 99.8 9.5E-20 3.3E-24 181.7 18.8 199 159-401 44-244 (272)
84 1h6u_A Internalin H; cell adhe 99.8 8.7E-20 3E-24 185.4 18.1 193 68-291 42-234 (308)
85 4ay9_X Follicle-stimulating ho 99.8 2E-19 6.8E-24 186.2 18.8 202 70-292 12-220 (350)
86 4glp_A Monocyte differentiatio 99.8 7.1E-20 2.4E-24 186.2 15.2 228 88-370 63-306 (310)
87 4glp_A Monocyte differentiatio 99.8 8.9E-20 3E-24 185.5 14.4 202 178-392 90-307 (310)
88 2ast_B S-phase kinase-associat 99.8 4.7E-21 1.6E-25 197.2 4.9 228 156-399 70-313 (336)
89 2ca6_A RAN GTPase-activating p 99.8 5.4E-21 1.8E-25 200.8 2.8 61 311-371 243-316 (386)
90 2ast_B S-phase kinase-associat 99.8 3.5E-20 1.2E-24 190.7 8.7 249 91-378 49-313 (336)
91 2ca6_A RAN GTPase-activating p 99.8 7.5E-21 2.6E-25 199.7 2.7 269 68-365 10-337 (386)
92 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 180.9 18.1 232 138-387 12-254 (350)
93 3m19_A Variable lymphocyte rec 99.8 2.4E-18 8.1E-23 169.3 19.3 133 157-291 15-148 (251)
94 3goz_A Leucine-rich repeat-con 99.8 3.7E-20 1.3E-24 192.7 1.2 33 90-122 23-61 (362)
95 3cvr_A Invasion plasmid antige 99.8 4.9E-18 1.7E-22 185.4 17.1 191 136-356 60-252 (571)
96 3cvr_A Invasion plasmid antige 99.8 4.5E-18 1.5E-22 185.7 15.1 186 68-272 60-252 (571)
97 3m19_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 160.1 18.9 137 156-292 35-173 (251)
98 3goz_A Leucine-rich repeat-con 99.7 1.9E-18 6.5E-23 179.7 8.2 227 155-392 21-297 (362)
99 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.4E-22 166.2 15.2 171 176-371 43-213 (291)
100 1h6t_A Internalin B; cell adhe 99.7 3.8E-17 1.3E-21 164.4 15.0 165 68-261 47-211 (291)
101 2o6s_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 155.0 14.5 179 159-359 10-190 (208)
102 4ezg_A Putative uncharacterize 99.7 7.3E-17 2.5E-21 152.5 13.2 151 87-261 42-192 (197)
103 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.6E-21 176.7 16.1 185 162-372 27-211 (605)
104 1m9s_A Internalin B; cell inva 99.7 2.9E-16 9.7E-21 173.3 16.9 168 67-263 43-210 (605)
105 2o6s_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 149.7 14.8 177 70-275 10-190 (208)
106 2xot_A Amphoterin-induced prot 99.7 2.4E-16 8.1E-21 163.7 15.2 133 159-293 21-155 (361)
107 2v9t_B SLIT homolog 2 protein 99.7 7.2E-16 2.5E-20 148.3 15.6 131 159-291 14-145 (220)
108 1dce_A Protein (RAB geranylger 99.7 1.6E-18 5.5E-23 190.1 -3.8 177 156-351 349-549 (567)
109 4ezg_A Putative uncharacterize 99.7 4.6E-16 1.6E-20 146.9 12.6 154 108-287 40-194 (197)
110 1xeu_A Internalin C; cellular 99.6 2.5E-16 8.6E-21 155.9 10.3 165 158-371 21-185 (263)
111 3e6j_A Variable lymphocyte rec 99.6 3.1E-15 1E-19 144.8 15.7 150 158-348 21-172 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 4.5E-15 1.5E-19 142.7 16.4 131 157-287 33-166 (220)
113 1xeu_A Internalin C; cellular 99.6 7.4E-16 2.5E-20 152.5 10.4 167 68-264 20-186 (263)
114 1dce_A Protein (RAB geranylger 99.6 2.4E-17 8.1E-22 180.8 -0.5 191 176-385 346-566 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 3.8E-15 1.3E-19 143.2 15.0 150 159-348 14-166 (220)
116 2xot_A Amphoterin-induced prot 99.6 4E-15 1.4E-19 154.4 15.5 156 138-294 21-183 (361)
117 2v9t_B SLIT homolog 2 protein 99.6 8.1E-15 2.8E-19 140.9 16.3 149 139-288 15-166 (220)
118 3e6j_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 142.0 16.1 133 156-288 40-173 (229)
119 2ell_A Acidic leucine-rich nuc 99.6 7.6E-15 2.6E-19 134.7 10.5 134 156-291 24-164 (168)
120 4b8c_D Glucose-repressible alc 99.6 1.3E-15 4.3E-20 172.3 6.0 152 219-389 216-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.6 9.1E-15 3.1E-19 134.2 9.7 128 203-369 24-158 (168)
122 3sb4_A Hypothetical leucine ri 99.5 5.6E-14 1.9E-18 143.8 14.1 53 88-142 100-155 (329)
123 4b8c_D Glucose-repressible alc 99.5 4.6E-15 1.6E-19 167.6 4.8 130 156-287 224-354 (727)
124 1w8a_A SLIT protein; signaling 99.5 1.2E-13 4.2E-18 129.6 12.7 127 159-287 11-139 (192)
125 2je0_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 126.8 8.9 124 228-367 18-149 (149)
126 2je0_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 127.5 7.8 105 156-262 17-125 (149)
127 1a9n_A U2A', U2A'; complex (nu 99.5 9.1E-14 3.1E-18 128.5 9.5 130 225-370 17-152 (176)
128 3sb4_A Hypothetical leucine ri 99.4 7.8E-14 2.7E-18 142.8 7.0 90 273-363 225-326 (329)
129 2wfh_A SLIT homolog 2 protein 99.4 9.1E-13 3.1E-17 123.7 13.3 124 160-286 14-138 (193)
130 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.5E-17 122.6 13.9 124 139-263 14-139 (193)
131 4fdw_A Leucine rich hypothetic 99.4 1.3E-11 4.3E-16 129.4 22.3 59 68-129 136-196 (401)
132 1w8a_A SLIT protein; signaling 99.4 1.3E-12 4.4E-17 122.6 13.3 128 138-266 11-142 (192)
133 2o6r_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 119.5 14.0 128 158-287 9-137 (177)
134 2o6r_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 118.0 13.3 128 229-372 9-138 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.4 4.9E-13 1.7E-17 123.6 7.0 126 157-285 20-151 (176)
136 1ds9_A Outer arm dynein; leuci 99.3 9.4E-15 3.2E-19 138.0 -6.2 145 202-364 17-180 (198)
137 4fs7_A Uncharacterized protein 99.3 2.9E-10 9.9E-15 119.2 24.7 309 16-368 58-376 (394)
138 1ds9_A Outer arm dynein; leuci 99.3 2.8E-14 9.5E-19 134.7 -8.6 151 178-348 17-185 (198)
139 4fdw_A Leucine rich hypothetic 99.3 3.9E-10 1.3E-14 118.1 22.1 232 17-294 124-365 (401)
140 3g39_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 109.7 11.4 104 158-263 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 110.4 11.1 107 230-352 15-122 (174)
142 2r9u_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 109.9 11.4 103 159-263 15-118 (174)
143 3g39_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 108.3 11.1 106 229-350 11-117 (170)
144 4fs7_A Uncharacterized protein 99.1 1.4E-08 4.8E-13 106.3 25.0 294 79-387 59-374 (394)
145 3un9_A NLR family member X1; l 99.0 3.1E-11 1E-15 125.2 -1.7 62 179-240 72-139 (372)
146 2ifg_A High affinity nerve gro 98.9 2.8E-09 9.7E-14 109.5 11.0 103 160-263 12-116 (347)
147 3un9_A NLR family member X1; l 98.9 1.1E-10 3.6E-15 121.1 -0.8 85 156-240 72-168 (372)
148 4h09_A Hypothetical leucine ri 98.9 3.5E-07 1.2E-11 95.0 25.7 106 197-305 211-317 (379)
149 4gt6_A Cell surface protein; l 98.9 2.5E-07 8.5E-12 96.7 24.5 150 17-186 51-212 (394)
150 2ifg_A High affinity nerve gro 98.8 8.5E-09 2.9E-13 105.9 11.0 72 219-291 24-97 (347)
151 4gt6_A Cell surface protein; l 98.8 1.1E-06 3.7E-11 91.8 24.5 276 68-369 65-368 (394)
152 2ra8_A Uncharacterized protein 98.8 1E-08 3.5E-13 105.4 7.9 163 199-370 135-319 (362)
153 4h09_A Hypothetical leucine ri 98.7 8.7E-06 3E-10 84.3 28.2 55 310-365 284-340 (379)
154 2ra8_A Uncharacterized protein 98.6 2.4E-08 8.3E-13 102.6 4.4 182 172-369 132-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.1 1.4E-06 4.9E-11 80.5 3.1 115 173-287 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.0 2E-06 6.9E-11 79.5 3.3 92 171-262 57-163 (185)
157 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 75.8 3.7 47 81-127 52-100 (176)
158 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4E-10 72.8 4.4 86 179-264 61-153 (176)
159 3rw6_A Nuclear RNA export fact 97.8 3.4E-06 1.2E-10 82.2 0.4 65 201-266 168-236 (267)
160 3rw6_A Nuclear RNA export fact 97.6 5.4E-05 1.8E-09 73.7 5.8 65 310-375 168-237 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0036 1.2E-07 57.6 4.5 110 176-285 38-168 (197)
162 3rfe_A Platelet glycoprotein I 96.2 0.0069 2.4E-07 51.8 5.9 52 316-369 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0043 1.5E-07 57.1 3.4 90 171-260 62-167 (197)
164 3rfe_A Platelet glycoprotein I 95.7 0.015 5.2E-07 49.6 5.9 52 71-123 12-66 (130)
165 2lz0_A Uncharacterized protein 28.1 48 0.0016 26.1 3.5 47 16-77 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-38 Score=363.37 Aligned_cols=382 Identities=18% Similarity=0.151 Sum_probs=246.6
Q ss_pred EeecccccccccCchhh-ccCccceEEEEeCCCCC----------CCCccccccccce--EEcCCCCcCCCcCceEEEeC
Q 046284 9 FLDLSKIKRINLDPGAF-TNMSNMRLLKFYGIEKL----------PSMSIEEHLSYSK--VQLPNGLDYLPKKLRYLHWD 75 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f-~~l~~Lr~L~l~~n~~l----------~~~~~~~~~~~~~--~~l~~~l~~l~~~L~~L~l~ 75 (618)
+||+++|.+....+..+ .++++|++|++++|.+. ..+..+...+... ..-......+ .+|++|+++
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~Ls 208 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVS 208 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTC-TTCCEEECC
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccC-CcCCEEECc
Confidence 45666665543333333 56666666666666541 1111111111110 1111122444 489999999
Q ss_pred CCCCCccCCCC-CCCCceEEEccCCCcee-ccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCC
Q 046284 76 TYPLRTLPSNF-KPKNLVALNLSCSKVEQ-LWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPL 153 (618)
Q Consensus 76 ~~~l~~lp~~~-~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~ 153 (618)
+|.+...+..+ .+++|++|++++|+++. +|..+..+++|++|++++|.....+|.. .+++|++|++++|.....+|.
T Consensus 209 ~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp SSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCC
T ss_pred CCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCH
Confidence 99987644336 78999999999999984 6788899999999999999865566665 889999999999876556665
Q ss_pred CC----CCccEEEccCCCCc-ccCccccCCCCCcEEecccCcCccchhhh-ccCCCCCcEEecCCccCccccchhhhCCC
Q 046284 154 IS----GKVTSLNLSKSAIE-EVPSSIECLTDLKKLNLKYCKRLKRISTR-FCKLRSLVDLFLNGCVNLERFPEILEKME 227 (618)
Q Consensus 154 ~~----~~L~~L~L~~n~i~-~l~~~i~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 227 (618)
.+ .+|++|++++|.+. .+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+..++
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 43 67899999999987 66788899999999999999888777765 88899999999999888878887777766
Q ss_pred -CCCEEEecCcCCc-cCCccCCC--CCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 228 -HLERINLNKTAIT-ELPSSFEN--LPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 228 -~L~~L~L~~n~i~-~lp~~l~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
+|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..++.+++|+.|++++|.++...+..+..+++|+.|
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 7777777777666 34544444 5566666666666655666666666666666666666654444444455555655
Q ss_pred ecCCCC----------CCCCCCeEeccCCCCCc-CCccccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccC
Q 046284 304 YFSRCK----------GLAYLGHLDMRNCAVME-IPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 304 ~l~~~~----------~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
++++|. .+++|++|++++|.+.. +|..+..+++|+.|++++|+++ .+|.+++.+++|++|+|++|+..
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 555543 34455555555555553 4555555555555555555555 44555555555555555555544
Q ss_pred CcCCCC---CCCccEEeccCCCCC
Q 046284 372 QSLPEL---PLCLESLDLTGCNML 392 (618)
Q Consensus 372 ~~lp~l---~~~L~~L~l~~c~~l 392 (618)
+.+|.. .++|+.|++++|+..
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEE
T ss_pred CcCCHHHcCCCCCCEEECCCCccC
Confidence 444421 234555555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-38 Score=363.16 Aligned_cols=408 Identities=20% Similarity=0.202 Sum_probs=270.8
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCC----------CccccccccceE-EcCCCCcCCCcCceEEEeCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPS----------MSIEEHLSYSKV-QLPNGLDYLPKKLRYLHWDTY 77 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~----------~~~~~~~~~~~~-~l~~~l~~l~~~L~~L~l~~~ 77 (618)
.||+++|.+....+. |.++++|++|++++|.+... +..+........ .+|.. .+ .+|++|++++|
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l-~~L~~L~L~~n 279 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL-KSLQYLSLAEN 279 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CC-TTCCEEECCSS
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--cc-CCCCEEECcCC
Confidence 456666655544443 66666666666666654210 000110000001 22221 33 47788888877
Q ss_pred CCC-ccCCCC-C-CCCceEEEccCCCcee-ccccccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCCCCCcC
Q 046284 78 PLR-TLPSNF-K-PKNLVALNLSCSKVEQ-LWEGEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVNLIEF 151 (618)
Q Consensus 78 ~l~-~lp~~~-~-l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~~ 151 (618)
.+. .+|..+ . +++|++|++++|.++. +|..+..+++|++|++++|.....+|. +..+++|++|++++|.....+
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 776 677666 3 4788888888888874 567778888888888888875446662 677788888888887655455
Q ss_pred CCCC----CCccEEEccCCCCc-ccCccccC--CCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhh
Q 046284 152 PLIS----GKVTSLNLSKSAIE-EVPSSIEC--LTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILE 224 (618)
Q Consensus 152 ~~~~----~~L~~L~L~~n~i~-~l~~~i~~--l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 224 (618)
|..+ .+|+.|++++|.+. .+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 5543 26777777777765 34555544 66777777777777667777777777777777777777777777777
Q ss_pred CCCCCCEEEecCcCCc-cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 225 KMEHLERINLNKTAIT-ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 225 ~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.++...+..+..+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 7777777777777776 566667777777777777777777777777777777777777777774444444567777777
Q ss_pred ecCCCC----------CCCCCCeEeccCCCCCc-CCc-------------------------------------------
Q 046284 304 YFSRCK----------GLAYLGHLDMRNCAVME-IPQ------------------------------------------- 329 (618)
Q Consensus 304 ~l~~~~----------~l~~L~~L~L~~n~l~~-~p~------------------------------------------- 329 (618)
++++|. .+++|+.|++++|.+.. +|.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 777665 56677777777776552 332
Q ss_pred ---------------------------cccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccCCcCCCC---C
Q 046284 330 ---------------------------EIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKMLQSLPEL---P 378 (618)
Q Consensus 330 ---------------------------~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---~ 378 (618)
.++.+++|+.|++++|+++ .+|..++.+++|+.|+|++|+..+.+|+. .
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 3344577888888888888 77888888888888888888888788752 4
Q ss_pred CCccEEeccCCCCCCcCCCCccccccccccccccccCCCCCC
Q 046284 379 LCLESLDLTGCNMLRSLPELPLCLHSLNATNCNRLQSLPEIP 420 (618)
Q Consensus 379 ~~L~~L~l~~c~~l~~l~~~~~~L~~L~i~~c~~l~~l~~~p 420 (618)
++|+.|++++|...+.+|..+..++.|...+....+..+.+|
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 678888888888887888776655444444444443333344
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-37 Score=344.16 Aligned_cols=379 Identities=18% Similarity=0.184 Sum_probs=214.4
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCcc-CCCC
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL-PSNF 86 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~ 86 (618)
..||+++|.+..+.+.+|.++++||+|++++|.+. ...|..+..+ .+|++|++++|.+..+ |..+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-------------WIHEDTFQSQ-HRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-------------EECTTTTTTC-TTCCEEECTTCCCSEECTTTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccc-------------eeChhhccCc-cccCeeeCCCCcccccChhhh
Confidence 46899999999999999999999999999998762 3345666666 4899999999988776 4455
Q ss_pred -CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCc-ccCCCCCCCCCcEEeccCCCCCCcCCC---CCCCcc-
Q 046284 87 -KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLR-SFPSNLHFVCPVTINFSYCVNLIEFPL---ISGKVT- 159 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~-~lp~~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~- 159 (618)
.+++|++|++++|+++.+ +..+..+++|++|++++|.... ..|.+..+++|++|++++|......+. .+.+|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 788999999999998887 4778888899999999887433 336777788888888888754322221 233444
Q ss_pred -EEEccCCCCcccCcc----------------------------------------------------------------
Q 046284 160 -SLNLSKSAIEEVPSS---------------------------------------------------------------- 174 (618)
Q Consensus 160 -~L~L~~n~i~~l~~~---------------------------------------------------------------- 174 (618)
.|++++|.+..++..
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 555555555444332
Q ss_pred ------------ccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc-c
Q 046284 175 ------------IECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT-E 241 (618)
Q Consensus 175 ------------i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~ 241 (618)
++.+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 344444444444444332 33444444444444444444444444444444444445554444444 3
Q ss_pred CCc-cCCCCCCCCEEEeccCCCcccc--CcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC---------
Q 046284 242 LPS-SFENLPGLEELFVEDCSKLDKL--PDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK--------- 309 (618)
Q Consensus 242 lp~-~l~~l~~L~~L~L~~~~~~~~l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~--------- 309 (618)
+|. .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+..++...+..+++|+.|+++++.
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 332 2444455555555554444333 3444445555555555555444444444444455555544432
Q ss_pred --CCCCCCeEeccCCCCCc-CCccccCCCCCCEEeCCCCCCcc--Cc--ccccCCcccceeeccccccCCcCCC---CCC
Q 046284 310 --GLAYLGHLDMRNCAVME-IPQEIACLSSLTTLNLSGNSFES--LP--ASIKQLSQLRSLHLEGCKMLQSLPE---LPL 379 (618)
Q Consensus 310 --~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~~~~l~~lp~---l~~ 379 (618)
.+++|++|++++|.+.. .|..+..+++|++|++++|.++. +| ..+..+++|++|++++|+..+..|. -.+
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 33445555555555444 23334445555555555554442 11 2344455555555555543333222 123
Q ss_pred CccEEeccCCCCCCcCCCCccc
Q 046284 380 CLESLDLTGCNMLRSLPELPLC 401 (618)
Q Consensus 380 ~L~~L~l~~c~~l~~l~~~~~~ 401 (618)
+|++|++++|......|..+..
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTT
T ss_pred CCCEEECCCCccCcCChhHhCc
Confidence 4555555555444433333333
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-39 Score=359.50 Aligned_cols=403 Identities=15% Similarity=0.162 Sum_probs=323.8
Q ss_pred eEEEeecccccccccCchhhccCccceEEEEeCCCCCCCCcccccc--------------------ccceEEcCCCCcCC
Q 046284 6 EGIFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHL--------------------SYSKVQLPNGLDYL 65 (618)
Q Consensus 6 ~~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~--------------------~~~~~~l~~~l~~l 65 (618)
+...||++++.+...-+.+|++|++||+|++++|.....-...... .......|..+...
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 3456788888877666789999999999999998530000000000 00000011111100
Q ss_pred ------------------CcCceEEEeC--CCCCCccCCCC-CCCCceEEEccCCCcee------------------ccc
Q 046284 66 ------------------PKKLRYLHWD--TYPLRTLPSNF-KPKNLVALNLSCSKVEQ------------------LWE 106 (618)
Q Consensus 66 ------------------~~~L~~L~l~--~~~l~~lp~~~-~l~~L~~L~L~~n~i~~------------------l~~ 106 (618)
...++.+.+. .|.++.+|..+ ++++|++|+|++|.++. +|.
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 0122222222 45677789888 89999999999999998 999
Q ss_pred ccc--ccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCC--cCCCCC---------CCccEEEccCCCCcccC
Q 046284 107 GEK--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLI--EFPLIS---------GKVTSLNLSKSAIEEVP 172 (618)
Q Consensus 107 ~~~--~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~--~~~~~~---------~~L~~L~L~~n~i~~l~ 172 (618)
.+. ++++|++|+|++|.....+| .+.++++|++|++++|..+. .+|..+ .+|+.|++++|.++.+|
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 988 99999999999999888888 57889999999999997343 466433 78999999999999999
Q ss_pred c--cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCC-CCEEEecCcCCccCCccCCCC
Q 046284 173 S--SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEH-LERINLNKTAITELPSSFENL 249 (618)
Q Consensus 173 ~--~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~lp~~l~~l 249 (618)
. .++.+++|+.|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..+
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 9 89999999999999999988899 7999999999999999877 78888999999 999999999999999988776
Q ss_pred C--CCCEEEeccCCCccccCcccC-------CCccceEEEecCcccccCCcchhhccCCCceEecCCCC----------C
Q 046284 250 P--GLEELFVEDCSKLDKLPDNIG-------NLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK----------G 310 (618)
Q Consensus 250 ~--~L~~L~L~~~~~~~~lp~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~----------~ 310 (618)
+ +|++|++++|.+.+..|..+. .+++|+.|++++|.++.+|...+..+++|++|+++++. .
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 5 999999999999999998888 88899999999999999999988889999999998875 1
Q ss_pred -------CCCCCeEeccCCCCCcCCcccc--CCCCCCEEeCCCCCCccCcccccCCcccceeecc------ccccCCcCC
Q 046284 311 -------LAYLGHLDMRNCAVMEIPQEIA--CLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLE------GCKMLQSLP 375 (618)
Q Consensus 311 -------l~~L~~L~L~~n~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~------~~~~l~~lp 375 (618)
+++|++|++++|.+..+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|+ +|+..+.+|
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 1289999999999999999887 8999999999999999999999999999999995 455666777
Q ss_pred CC---CCCccEEeccCCCCCCcCCCC-ccccccccccccc
Q 046284 376 EL---PLCLESLDLTGCNMLRSLPEL-PLCLHSLNATNCN 411 (618)
Q Consensus 376 ~l---~~~L~~L~l~~c~~l~~l~~~-~~~L~~L~i~~c~ 411 (618)
.. .++|+.|++++|.. +.+|.. .++|+.|++.+++
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 42 46899999999877 777763 3566667666653
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-36 Score=334.10 Aligned_cols=399 Identities=19% Similarity=0.210 Sum_probs=292.5
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCC-------CCccc---cccccceEEc-CCCCcCCCcCceEEEeCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLP-------SMSIE---EHLSYSKVQL-PNGLDYLPKKLRYLHWDTY 77 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~-------~~~~~---~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~ 77 (618)
.||+++|++..+.+.+|+++++|++|++++|.+.. .+..+ .........+ +..+..+ .+|++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC-CcccEEECCCC
Confidence 67899998888999999999999999999987520 00000 0000011111 1223333 25555555555
Q ss_pred CCCcc--CCCCCCCCceEEEccCCCceecc-ccccccccCc--EEeccCCCCCcccCCCCCCC-----------------
Q 046284 78 PLRTL--PSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLS--ALSFEGCKSLRSFPSNLHFV----------------- 135 (618)
Q Consensus 78 ~l~~l--p~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~--~L~Ls~~~~l~~lp~~~~l~----------------- 135 (618)
.+..+ |..+.+++|++|++++|.++.++ ..+..+++|+ .|++++|......|......
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHh
Confidence 55544 33335555555555555555542 3455555555 55555555333333333333
Q ss_pred -----------------------------------CCcEEeccCCCCCCcCCC----CCCCccEEEccCCCCcccCcccc
Q 046284 136 -----------------------------------CPVTINFSYCVNLIEFPL----ISGKVTSLNLSKSAIEEVPSSIE 176 (618)
Q Consensus 136 -----------------------------------~L~~L~l~~~~~l~~~~~----~~~~L~~L~L~~n~i~~l~~~i~ 176 (618)
+|+.|++++|.. ..++. ...+|+.|++++|.++++|..+.
T Consensus 220 ~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~ 298 (606)
T 3t6q_A 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSELPSGLV 298 (606)
T ss_dssp HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC
T ss_pred hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc-CccCHHHhccccCCCEEeccCCccCCCChhhc
Confidence 333444444422 22222 24589999999999999999999
Q ss_pred CCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccch-hhhCCCCCCEEEecCcCCccC---CccCCCCCCC
Q 046284 177 CLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPE-ILEKMEHLERINLNKTAITEL---PSSFENLPGL 252 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~n~i~~l---p~~l~~l~~L 252 (618)
.+++|++|++++|.+.+..|..+..+++|++|++++|...+.++. .++.+++|++|++++|.++.+ +..+..+++|
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 999999999999999888888899999999999999998866654 589999999999999999966 6779999999
Q ss_pred CEEEeccCCCccccCcccCCCccceEEEecCcccccCC-cchhhccCCCceEecCCCC----------CCCCCCeEeccC
Q 046284 253 EELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLP-SSSVAYSNRLGVLYFSRCK----------GLAYLGHLDMRN 321 (618)
Q Consensus 253 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~~~----------~l~~L~~L~L~~ 321 (618)
++|++++|.+.+..|..+..+++|+.|++++|.++... ...+..+++|+.|++++|. ++++|++|++++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 99999999998888999999999999999999998654 4557789999999999875 688999999999
Q ss_pred CCCCc--C--CccccCCCCCCEEeCCCCCCccC-cccccCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCC
Q 046284 322 CAVME--I--PQEIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLR 393 (618)
Q Consensus 322 n~l~~--~--p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~ 393 (618)
|.+.+ + +..+..+++|+.|++++|+++.+ |..+..+++|++|++++|+.....|+. .++| .|++++|....
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 99976 2 35688899999999999999976 578999999999999999877766643 3567 99999997765
Q ss_pred cCCCCcc---cccccccccc
Q 046284 394 SLPELPL---CLHSLNATNC 410 (618)
Q Consensus 394 ~l~~~~~---~L~~L~i~~c 410 (618)
..|..+. +|+.|++.++
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTC
T ss_pred cCHhhcccCCCCCEEeCCCC
Confidence 5554433 3444544443
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-36 Score=346.57 Aligned_cols=400 Identities=16% Similarity=0.188 Sum_probs=306.7
Q ss_pred EEEeecccccccccCchhhccCccceEEEE-eCCCCCCCCccc--cc--------------------cc------cc---
Q 046284 7 GIFLDLSKIKRINLDPGAFTNMSNMRLLKF-YGIEKLPSMSIE--EH--------------------LS------YS--- 54 (618)
Q Consensus 7 ~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l-~~n~~l~~~~~~--~~--------------------~~------~~--- 54 (618)
...||++++.+...-+.+|+++++|++|++ ++|.+....... .. .. ..
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 456789999887666789999999999999 666431000000 00 00 00
Q ss_pred ---eEEcCC----CCcCCCcCceEEEeCC--CCCCccCCCC-CCCCceEEEccCCCcee------------------ccc
Q 046284 55 ---KVQLPN----GLDYLPKKLRYLHWDT--YPLRTLPSNF-KPKNLVALNLSCSKVEQ------------------LWE 106 (618)
Q Consensus 55 ---~~~l~~----~l~~l~~~L~~L~l~~--~~l~~lp~~~-~l~~L~~L~L~~n~i~~------------------l~~ 106 (618)
....|. ..... ..++.+.+.. |.++.+|..+ ++++|++|+|++|.++. +|.
T Consensus 405 ~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhhCccccccccccc-cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 000000 00001 1333333333 5666688877 78999999999999988 888
Q ss_pred ccc--ccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCC--cCCC----------CCCCccEEEccCCCCccc
Q 046284 107 GEK--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLI--EFPL----------ISGKVTSLNLSKSAIEEV 171 (618)
Q Consensus 107 ~~~--~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~--~~~~----------~~~~L~~L~L~~n~i~~l 171 (618)
.+. ++++|++|+|++|.....+| .+.++++|+.|++++|..+. .+|. ...+|+.|++++|.+..+
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 877 89999999999998777777 47788999999999986343 3443 234899999999999999
Q ss_pred Cc--cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCC-CCEEEecCcCCccCCccCCC
Q 046284 172 PS--SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEH-LERINLNKTAITELPSSFEN 248 (618)
Q Consensus 172 ~~--~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~L~~n~i~~lp~~l~~ 248 (618)
|. .++.+++|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 98 8999999999999999877 777 7889999999999999877 78888889988 99999999999999988877
Q ss_pred CCC--CCEEEeccCCCccccCcc---cC--CCccceEEEecCcccccCCcchhhccCCCceEecCCCC------------
Q 046284 249 LPG--LEELFVEDCSKLDKLPDN---IG--NLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK------------ 309 (618)
Q Consensus 249 l~~--L~~L~L~~~~~~~~lp~~---l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~------------ 309 (618)
++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.++.+|...+..+++|+.|+++++.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 654 999999999887766532 22 34589999999999999998888788889999988765
Q ss_pred -----CCCCCCeEeccCCCCCcCCcccc--CCCCCCEEeCCCCCCccCcccccCCcccceeeccc------cccCCcCCC
Q 046284 310 -----GLAYLGHLDMRNCAVMEIPQEIA--CLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEG------CKMLQSLPE 376 (618)
Q Consensus 310 -----~l~~L~~L~L~~n~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------~~~l~~lp~ 376 (618)
++++|+.|+|++|.+..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |...+.+|.
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 11289999999999999998887 89999999999999999998899999999999977 555666774
Q ss_pred C---CCCccEEeccCCCCCCcCCCC-ccccccccccccc
Q 046284 377 L---PLCLESLDLTGCNMLRSLPEL-PLCLHSLNATNCN 411 (618)
Q Consensus 377 l---~~~L~~L~l~~c~~l~~l~~~-~~~L~~L~i~~c~ 411 (618)
. .++|+.|++++|.. +.+|.. .++|+.|++++++
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 2 46899999999876 777764 3456777776654
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-36 Score=345.36 Aligned_cols=402 Identities=18% Similarity=0.148 Sum_probs=244.5
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEc-CCCCcCCCcCceEEEeCCCCCCcc-CCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL-PSNF 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~~~ 86 (618)
.||+++|.+..+.+.+|.++++|++|++++|... ..+ |..+..+ .+|++|++++|.+..+ |..|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-------------~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-------------LTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-------------CEECTTTTSSC-TTCCEEECTTCCCCEECTTSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCc-------------cccCHHHhcCC-CCCCEEECCCCcCcccCHhHc
Confidence 5789999999999999999999999999998542 455 5567677 4899999999998876 6666
Q ss_pred -CCCCceEEEccCCCcee-cccc--ccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCCCC-----
Q 046284 87 -KPKNLVALNLSCSKVEQ-LWEG--EKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPLIS----- 155 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~~~----- 155 (618)
++++|++|+|++|.++. ++.. +.++++|++|+|++|......+ .+.++++|++|++++|......+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 78999999999999886 4443 8889999999999987444333 47888999999998875433222221
Q ss_pred CCccEEEccCCCCcc-cCccccCC--------------------------------------------------------
Q 046284 156 GKVTSLNLSKSAIEE-VPSSIECL-------------------------------------------------------- 178 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~-l~~~i~~l-------------------------------------------------------- 178 (618)
.+|+.|++++|.+.. .|..++.+
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 234444444444432 12222222
Q ss_pred ------------CCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccC-Ccc
Q 046284 179 ------------TDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITEL-PSS 245 (618)
Q Consensus 179 ------------~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~ 245 (618)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 3455555555555544455555555555555555555555555555555566666666555544 445
Q ss_pred CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCC-----------------
Q 046284 246 FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC----------------- 308 (618)
Q Consensus 246 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~----------------- 308 (618)
+..+++|++|++++|.+....+..+..+++|+.|++++|.++.++. +++|+.|+++++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccccccccceeec
Confidence 5555566666666555544444455555555555555555554332 222222222221
Q ss_pred ---C-----------CCCCCCeEeccCCCCCcCCc--cccCCCCCCEEeCCCCCCccC------cccccCCcccceeecc
Q 046284 309 ---K-----------GLAYLGHLDMRNCAVMEIPQ--EIACLSSLTTLNLSGNSFESL------PASIKQLSQLRSLHLE 366 (618)
Q Consensus 309 ---~-----------~l~~L~~L~L~~n~l~~~p~--~l~~l~~L~~L~Ls~n~l~~l------p~~l~~l~~L~~L~L~ 366 (618)
. .+++|+.|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 1 34555556666655554322 233455666666666655422 2346677788888888
Q ss_pred ccccCCcCCC---CCCCccEEeccCCCCCCcCCC-C-ccccccccccccccccCCCCCCccccccchhh
Q 046284 367 GCKMLQSLPE---LPLCLESLDLTGCNMLRSLPE-L-PLCLHSLNATNCNRLQSLPEIPSCLQELDASV 430 (618)
Q Consensus 367 ~~~~l~~lp~---l~~~L~~L~l~~c~~l~~l~~-~-~~~L~~L~i~~c~~l~~l~~~p~~L~~L~~~~ 430 (618)
+|......|. -.++|+.|++++|... .+|. . .++|+.|+++++.--...|.....|+.|++++
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCS-SCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred CCcccccChhHccchhhhheeECCCCCCC-ccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 8865544443 2357888888887543 3432 2 24677777766543333344434566666665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-35 Score=327.85 Aligned_cols=380 Identities=19% Similarity=0.170 Sum_probs=260.0
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEc-CCCCcCCCcCceEEEeCCCCCCcc-CCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL-PSNF 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~~~ 86 (618)
.||+++|.+..+.+.+|+++++||+|++++|.+ ..+ |..+..+ ++|++|++++|.++.+ |..|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------------~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--------------ETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--------------CEECTTTTTTC-TTCCEEECTTCCCCCCCTTSS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcc--------------cccCHHHhhch-hhcCEeECCCCcccccChhhc
Confidence 567888888888888888888888888888765 222 2333344 3555555555555554 3444
Q ss_pred -CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCc-ccC-CCCCCCCCcEEeccCCCCCCcCC----------
Q 046284 87 -KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVNLIEFP---------- 152 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~-~lp-~~~~l~~L~~L~l~~~~~l~~~~---------- 152 (618)
++++|++|++++|.++.++ ..+.++++|++|++++|.... .+| .+.++++|++|++++|......+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 4555555555555555544 445555555555555554222 233 24445555555555442111000
Q ss_pred --------------------------------------------------------------------------------
Q 046284 153 -------------------------------------------------------------------------------- 152 (618)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (618)
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence
Q ss_pred ---------------------CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecC
Q 046284 153 ---------------------LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLN 211 (618)
Q Consensus 153 ---------------------~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 211 (618)
....+|+.|+++++.+..+| .+..+++|+.|++++|.+ +.+|. + .+++|++|+++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLT 336 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEE
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeecc
Confidence 11245667777777777777 788888999999999887 77774 5 78888888888
Q ss_pred CccCccccchhhhCCCCCCEEEecCcCCccC---CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccccc
Q 046284 212 GCVNLERFPEILEKMEHLERINLNKTAITEL---PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQ 288 (618)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~ 288 (618)
+|...+.. .+..+++|++|++++|.++.+ |..+..+++|++|++++|... .+|..+..+++|+.|++++|.+..
T Consensus 337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEES
T ss_pred CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCC
Confidence 88655544 566788888888888888755 677778888888888888644 466778888888888888888887
Q ss_pred CCc-chhhccCCCceEecCCCC----------CCCCCCeEeccCCCCCc--CCccccCCCCCCEEeCCCCCCccC-cccc
Q 046284 289 LPS-SSVAYSNRLGVLYFSRCK----------GLAYLGHLDMRNCAVME--IPQEIACLSSLTTLNLSGNSFESL-PASI 354 (618)
Q Consensus 289 ~~~-~~~~~~~~L~~L~l~~~~----------~l~~L~~L~L~~n~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l 354 (618)
.+. ..+..+++|+.|++++|. ++++|++|++++|.+.. +|..++.+++|+.|++++|+++.+ |..+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 665 566678888888888765 67788888888888876 677788888888888888888855 4667
Q ss_pred cCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCCcCCCCcc----ccccccccccc
Q 046284 355 KQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLRSLPELPL----CLHSLNATNCN 411 (618)
Q Consensus 355 ~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~~l~~~~~----~L~~L~i~~c~ 411 (618)
..+++|++|++++|+.....|.. .++|+.|++++|. ++.+|..+. +|+.|++.+++
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 88888888888888766655532 3578888888886 456665433 35666666543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-35 Score=328.07 Aligned_cols=360 Identities=15% Similarity=0.157 Sum_probs=237.0
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCC-CCcCCCcCceEEEeCCCCCCccC-CC
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPN-GLDYLPKKLRYLHWDTYPLRTLP-SN 85 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp-~~ 85 (618)
..+|.+++.+..++.... ++|+.|++++|.+ ..++. .+..+ ++|++|++++|.++.++ ..
T Consensus 14 ~~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l--------------~~~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~ 75 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP---SSTKNIDLSFNPL--------------KILKSYSFSNF-SELQWLDLSRCEIETIEDKA 75 (606)
T ss_dssp TEEECTTSCCSSCCTTSC---TTCCEEECTTSCC--------------CEECTTTTTTC-TTCCEEECTTCCCCEECTTT
T ss_pred CceEccCCCcccCCCCCC---CCcCEEECCCCCc--------------CEeChhhccCC-ccCcEEeCCCCcccccCHHH
Confidence 467888888888876443 7899999999886 44544 66666 59999999999999885 45
Q ss_pred C-CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCC-cCCCC---CCC
Q 046284 86 F-KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLI-EFPLI---SGK 157 (618)
Q Consensus 86 ~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~-~~~~~---~~~ 157 (618)
| ++++|++|++++|.++.+ |..+.++++|++|++++|. +..++ .+.++++|++|++++|.... .+|.. +.+
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 6 899999999999999998 7889999999999999998 55544 68899999999999996553 45654 458
Q ss_pred ccEEEccCCCCcccCc-cccCCCCCc----EEecccCcCccchhhhccCCCCCcEEecCCccCc-cccchh---------
Q 046284 158 VTSLNLSKSAIEEVPS-SIECLTDLK----KLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNL-ERFPEI--------- 222 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~-~i~~l~~L~----~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~~~~~~--------- 222 (618)
|++|++++|.++.++. .++.+.+|+ +|++++|.+.+..+..+. ..+|++|++++|... +..|..
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhcccccccc
Confidence 9999999999987743 455555544 788888776554444443 336777777776543 111111
Q ss_pred -----------------------------------------------hhCCCCCCEEEecCcCCccCCccCCCCCCCCEE
Q 046284 223 -----------------------------------------------LEKMEHLERINLNKTAITELPSSFENLPGLEEL 255 (618)
Q Consensus 223 -----------------------------------------------~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 255 (618)
+..+++|+.|+++++.++.+| .+..+++|++|
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSL 312 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEE
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEE
Confidence 444556666666666666666 56666666666
Q ss_pred EeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC------------CCCCCCeEeccCCC
Q 046284 256 FVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK------------GLAYLGHLDMRNCA 323 (618)
Q Consensus 256 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~------------~l~~L~~L~L~~n~ 323 (618)
++++|.. +.+|. + .+++|+.|++++|...... .+..+++|++|+++++. .+++|++|++++|.
T Consensus 313 ~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 313 SIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred EcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 6666655 55552 3 5666666666665322111 22245555555555543 44555556665555
Q ss_pred CCcCCccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCC
Q 046284 324 VMEIPQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLR 393 (618)
Q Consensus 324 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~ 393 (618)
+..+|..+..+++|+.|++++|.+..++ ..+..+++|++|++++|......|.. .++|++|++++|....
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 5555555555555555665555555433 24555555555555555544444321 2455555555554433
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-35 Score=324.25 Aligned_cols=431 Identities=18% Similarity=0.168 Sum_probs=266.8
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCccCCC-C
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLPSN-F 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~-~ 86 (618)
.||+++|++..+.+.+|.++++||+|++++|.+ ..++ ..+..+ .+|++|++++|.++.+|.. +
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRI--------------NTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------------CEECTTTTTTC-TTCCEEECTTSCCCSCCHHHH
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCc--------------CccChhhcccc-ccCCEEECCCCccCccCHHHh
Confidence 345555555555555555555555555555543 2222 334444 2555555555555555443 2
Q ss_pred -CCCCceEEEccCCCceec--cccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCCCC---CCc
Q 046284 87 -KPKNLVALNLSCSKVEQL--WEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPLIS---GKV 158 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l--~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~~~---~~L 158 (618)
.+++|++|++++|.++.+ +..+..+++|++|++++|..+..+| .+.++++|++|++++|......|..+ .+|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 455555555555555532 3445555555555555555444443 34555555555555554333333332 234
Q ss_pred cEEEccCCCCcccCccc-cCCCCCcEEecccCcCccch--h-hhccCCCCCcEEecCCccCccccc----hhhhCCCCCC
Q 046284 159 TSLNLSKSAIEEVPSSI-ECLTDLKKLNLKYCKRLKRI--S-TRFCKLRSLVDLFLNGCVNLERFP----EILEKMEHLE 230 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i-~~l~~L~~L~L~~~~~~~~l--~-~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~ 230 (618)
+.|++++|.+..+|..+ ..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 55555555555444432 34555555555555544321 1 112234555555555554443222 2334556667
Q ss_pred EEEecCcCCccCC-------ccCCCCCCCCEEEeccCCCccc-----cCcccCCCccceEEEecCcccccCCcchhhccC
Q 046284 231 RINLNKTAITELP-------SSFENLPGLEELFVEDCSKLDK-----LPDNIGNLKCLFIISAVGSAISQLPSSSVAYSN 298 (618)
Q Consensus 231 ~L~L~~n~i~~lp-------~~l~~l~~L~~L~L~~~~~~~~-----lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 298 (618)
.|++++|.+..++ ..+..+++|+.|++.++..... ++..+...++|+.|++++|.+..+|...+..++
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~ 334 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCT
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCc
Confidence 7777666555332 1245566777777777654321 122223456899999999999999988877899
Q ss_pred CCceEecCCCC-------------CCCCCCeEeccCCCCCcCC---ccccCCCCCCEEeCCCCCCccCcccccCCcccce
Q 046284 299 RLGVLYFSRCK-------------GLAYLGHLDMRNCAVMEIP---QEIACLSSLTTLNLSGNSFESLPASIKQLSQLRS 362 (618)
Q Consensus 299 ~L~~L~l~~~~-------------~l~~L~~L~L~~n~l~~~p---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 362 (618)
+|++|+++++. .+++|++|++++|.+..++ ..+..+++|+.|++++|+++.+|..+..+++|++
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccE
Confidence 99999998875 5689999999999999875 3588899999999999999999999999999999
Q ss_pred eeccccccCCcCC-CCCCCccEEeccCCCCCCcCCCCccccccccccccccccCCCCC--CccccccchhhhcccCCCCC
Q 046284 363 LHLEGCKMLQSLP-ELPLCLESLDLTGCNMLRSLPELPLCLHSLNATNCNRLQSLPEI--PSCLQELDASVLEKLSKPSP 439 (618)
Q Consensus 363 L~L~~~~~l~~lp-~l~~~L~~L~l~~c~~l~~l~~~~~~L~~L~i~~c~~l~~l~~~--p~~L~~L~~~~~~~L~~~~~ 439 (618)
|++++|+. +.+| ..|++|+.|++++|. ++.++..+++|+.|++.++ +++.+|.. ...|+.|+++++ .+++..+
T Consensus 415 L~Ls~N~l-~~l~~~~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 415 LNLSSTGI-RVVKTCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp EECTTSCC-SCCCTTSCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCT
T ss_pred EECCCCCc-ccccchhcCCceEEECCCCC-hhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCH
Confidence 99999984 4555 457899999999995 4556667788999999986 56666652 356888888876 3444433
Q ss_pred cccccCCccccCCCeEEEEccccc
Q 046284 440 DLCEWHPEYRLSQPIYFRFTNCLK 463 (618)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~nC~k 463 (618)
... ..+.....+.+.+++=
T Consensus 491 ~~~-----~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 491 GIF-----DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TGG-----GGCTTCCEEECCSSCB
T ss_pred HHH-----hcCcccCEEEecCCCc
Confidence 211 1233445677776653
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-35 Score=332.33 Aligned_cols=360 Identities=16% Similarity=0.184 Sum_probs=298.1
Q ss_pred cccccccCchhhccCccceEEEEeCCCCCCC-Ccccccc---ccceEEcCCCCc--CCCcCceEEEeCCCCC-CccCCCC
Q 046284 14 KIKRINLDPGAFTNMSNMRLLKFYGIEKLPS-MSIEEHL---SYSKVQLPNGLD--YLPKKLRYLHWDTYPL-RTLPSNF 86 (618)
Q Consensus 14 ~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~-~~~~~~~---~~~~~~l~~~l~--~l~~~L~~L~l~~~~l-~~lp~~~ 86 (618)
.|++..+ |.+|.++++|++|++++|.+... ....+.. ......+|..+. .++ +|++|++++|.+ ..+|..+
T Consensus 192 ~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTTT
T ss_pred cCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHHH
Confidence 4556665 56899999999999999986200 0000000 000001888888 885 999999999986 5788887
Q ss_pred -CCCCceEEEccCCC-cee--cccccccc------ccCcEEeccCCCCCcccCC---CCCCCCCcEEeccCCCCCCcCCC
Q 046284 87 -KPKNLVALNLSCSK-VEQ--LWEGEKNF------KYLSALSFEGCKSLRSFPS---NLHFVCPVTINFSYCVNLIEFPL 153 (618)
Q Consensus 87 -~l~~L~~L~L~~n~-i~~--l~~~~~~l------~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~l~~~~~l~~~~~ 153 (618)
++++|++|++++|+ ++. +|..+..+ ++|++|++++|. ++.+|. +..+++|++|++++|.....+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 89999999999998 885 88888776 999999999998 558887 8899999999999997655777
Q ss_pred CC---CCccEEEccCCCCcccCccccCCCC-CcEEecccCcCccchhhhccCCC--CCcEEecCCccCccccchhhh---
Q 046284 154 IS---GKVTSLNLSKSAIEEVPSSIECLTD-LKKLNLKYCKRLKRISTRFCKLR--SLVDLFLNGCVNLERFPEILE--- 224 (618)
Q Consensus 154 ~~---~~L~~L~L~~n~i~~l~~~i~~l~~-L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~L~~~~~~~~~~~~~~--- 224 (618)
.+ .+|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 44 4789999999999999999999999 999999999977 7888777654 899999999999998888888
Q ss_pred ----CCCCCCEEEecCcCCccCCccC-CCCCCCCEEEeccCCCccccCcccC--------CCccceEEEecCcccccCCc
Q 046284 225 ----KMEHLERINLNKTAITELPSSF-ENLPGLEELFVEDCSKLDKLPDNIG--------NLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 225 ----~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~lp~~l~--------~l~~L~~L~l~~n~l~~~~~ 291 (618)
.+++|++|++++|.++.+|..+ ..+++|++|++++|.+. .+|.... ++++|+.|++++|.++.+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence 7889999999999999998764 46899999999999877 6665433 23399999999999998887
Q ss_pred chhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCC------CCCCc-cCcccccCCcccceee
Q 046284 292 SSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLS------GNSFE-SLPASIKQLSQLRSLH 364 (618)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls------~n~l~-~lp~~l~~l~~L~~L~ 364 (618)
.++ ...+++|++|++++|.+..+|..+..+++|+.|+++ +|++. .+|..+..+++|++|+
T Consensus 506 ~~~-------------~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 506 DFR-------------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp GGS-------------TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred hhh-------------hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 653 025788999999999999999999999999999995 56555 7899999999999999
Q ss_pred ccccccCCcCCC-CCCCccEEeccCCCCCC
Q 046284 365 LEGCKMLQSLPE-LPLCLESLDLTGCNMLR 393 (618)
Q Consensus 365 L~~~~~l~~lp~-l~~~L~~L~l~~c~~l~ 393 (618)
|++|+. +.+|. +.++|+.|++++|+...
T Consensus 573 Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred CCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 999997 78885 66899999999997654
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=322.27 Aligned_cols=402 Identities=20% Similarity=0.198 Sum_probs=303.6
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCccC-CCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLP-SNF 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp-~~~ 86 (618)
.||+++|.+..+.+.+|.++++|+.|++++|.+ ..++ ..+..+ .+|++|++++|.++.+| ..|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------------~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------------QTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--------------CEECTTTTTTC-TTCCEEECTTCCCCEECTTTT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcC--------------CccCcccccCc-hhCCEEeCcCCcCCccCHhhh
Confidence 578999999899999999999999999999876 4454 445556 59999999999998887 445
Q ss_pred -CCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCc-ccC-CCCCCCCCcEEeccCCCCCCcCCCCC---CCc-
Q 046284 87 -KPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVNLIEFPLIS---GKV- 158 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~-~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~---~~L- 158 (618)
.+++|++|++++|+++.++. .+..+++|++|++++|.... .+| .+.++++|++|++++|......+..+ .+|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 79999999999999999874 68899999999999997433 345 47789999999999985443333322 245
Q ss_pred ---cEEEccCCCCcccCccccCCCCCcEEecccCc---------------------------------------------
Q 046284 159 ---TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCK--------------------------------------------- 190 (618)
Q Consensus 159 ---~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~--------------------------------------------- 190 (618)
+.|++++|.+..++.......+|+.|++++|.
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 78899999988876654444478888777652
Q ss_pred -------------CccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEe
Q 046284 191 -------------RLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFV 257 (618)
Q Consensus 191 -------------~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L 257 (618)
..+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+..+|. ..+++|++|++
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTF 332 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeC
Confidence 22234455666788888888887665 467777777 88888888888887776 47788888888
Q ss_pred ccCCCccccCcccCCCccceEEEecCcccccCC--cchhhccCCCceEecCCCC---------CCCCCCeEeccCCCCCc
Q 046284 258 EDCSKLDKLPDNIGNLKCLFIISAVGSAISQLP--SSSVAYSNRLGVLYFSRCK---------GLAYLGHLDMRNCAVME 326 (618)
Q Consensus 258 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~~~---------~l~~L~~L~L~~n~l~~ 326 (618)
++|...+..+. ..+++|+.|++++|.++... ...+..+++|++|+++++. .+++|++|++++|.+..
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc
Confidence 88876665554 67889999999999888764 3445578899999998876 78899999999998887
Q ss_pred CC--ccccCCCCCCEEeCCCCCCcc-CcccccCCcccceeeccccccC-CcCCC---CCCCccEEeccCCCCCCcCCCCc
Q 046284 327 IP--QEIACLSSLTTLNLSGNSFES-LPASIKQLSQLRSLHLEGCKML-QSLPE---LPLCLESLDLTGCNMLRSLPELP 399 (618)
Q Consensus 327 ~p--~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~~~~l-~~lp~---l~~~L~~L~l~~c~~l~~l~~~~ 399 (618)
.+ ..+..+++|+.|++++|.+.. .|..+..+++|++|++++|+.. ..+|. ..++|+.|++++|......|..+
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 53 367889999999999998885 5677888999999999999865 35554 34689999999997666556544
Q ss_pred ---cccccccccccccccCCCC-C---Cccccccchhhhc
Q 046284 400 ---LCLHSLNATNCNRLQSLPE-I---PSCLQELDASVLE 432 (618)
Q Consensus 400 ---~~L~~L~i~~c~~l~~l~~-~---p~~L~~L~~~~~~ 432 (618)
++|+.|++.++ +++.++. . ...|+.|++++++
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 45677777765 3444432 1 1345666666543
No 13
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-34 Score=306.13 Aligned_cols=387 Identities=22% Similarity=0.268 Sum_probs=204.2
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCC----Ccccccc-----------ccceEEcC----CCCcCCCcCc
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPS----MSIEEHL-----------SYSKVQLP----NGLDYLPKKL 69 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~----~~~~~~~-----------~~~~~~l~----~~l~~l~~~L 69 (618)
.+++++|.+..+ |.+|+++++|++|++++|.+... +..+... ......+. .++...+.+|
T Consensus 15 ~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L 93 (454)
T 1jl5_A 15 EPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL 93 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTC
T ss_pred hhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCC
Confidence 466777766444 45688888888888887654200 0000000 00001110 0111234567
Q ss_pred eEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCC
Q 046284 70 RYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLI 149 (618)
Q Consensus 70 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~ 149 (618)
++|++++|.++.+|.. +++|++|++++|+++.++.. .++|++|++++|. ++.+|.+..+++|++|++++|. +.
T Consensus 94 ~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~ 166 (454)
T 1jl5_A 94 ESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LK 166 (454)
T ss_dssp SEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CS
T ss_pred CEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCc-Cc
Confidence 7777777777776653 36777777777777766532 1577777777776 5557777777777777777773 44
Q ss_pred cCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCC
Q 046284 150 EFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHL 229 (618)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 229 (618)
.+|....+|++|++++|.++.+| .++.+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .+|. ++.+++|
T Consensus 167 ~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 167 KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCC
Confidence 56666677777777777777776 57777777777777776554 3332 247777777777655 4553 6777777
Q ss_pred CEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC
Q 046284 230 ERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK 309 (618)
Q Consensus 230 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 309 (618)
++|++++|.++.+|.. +++|++|++++|.+.+ +|.. +++|+.|++++|.++.++.. .++|+.|+++++.
T Consensus 240 ~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 240 TTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNE 308 (454)
T ss_dssp CEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSC
T ss_pred CEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc----CCcCCEEECcCCc
Confidence 7777777777777653 3677777777776544 4443 36777777777777765432 2566667666654
Q ss_pred -----CC-CCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCCCCCccE
Q 046284 310 -----GL-AYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPELPLCLES 383 (618)
Q Consensus 310 -----~l-~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~ 383 (618)
.+ ++|++|++++|.+..+|.. +++|+.|++++|+++.+|. .+++|++|++++|+. ..+|.+|..+..
T Consensus 309 l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l-~~l~~ip~~l~~ 381 (454)
T 1jl5_A 309 IRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL-REFPDIPESVED 381 (454)
T ss_dssp CSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SSCCCCCTTCCE
T ss_pred CCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCC-CcCCCChHHHHh
Confidence 22 4677777777776666543 4667777777777776665 356677777776653 344555555555
Q ss_pred EeccCCCCCCcCCCCccccccccccccccccCCCCCCccccccchhhh
Q 046284 384 LDLTGCNMLRSLPELPLCLHSLNATNCNRLQSLPEIPSCLQELDASVL 431 (618)
Q Consensus 384 L~l~~c~~l~~l~~~~~~L~~L~i~~c~~l~~l~~~p~~L~~L~~~~~ 431 (618)
|. .|.....+|..+.+|+.|++.+ ..++.+|.+|.+++.|++..|
T Consensus 382 L~--~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 382 LR--MNSHLAEVPELPQNLKQLHVET-NPLREFPDIPESVEDLRMNSE 426 (454)
T ss_dssp EE--CCC-----------------------------------------
T ss_pred hh--hcccccccccccCcCCEEECCC-CcCCccccchhhHhheeCcCc
Confidence 53 3445556666666777777776 345556677777777766544
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-33 Score=319.53 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=79.2
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCC-C-
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F- 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 86 (618)
.||+++|.+..+.+.+|.++++|++|++++|.+. ...|..+..+ .+|++|++++|.++.+|.. |
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-------------KLEPELCQKL-PMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-------------CCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-------------ccCHHHHhcc-cCcCEEECCCCccCccChhhhc
Confidence 5788888888888888999999999999887652 1112333344 3666666666666666653 3
Q ss_pred CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCC
Q 046284 87 KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCV 146 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~ 146 (618)
.+++|++|++++|+++.++ ..+..+++|++|++++|......| .+.++++|++|++++|.
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 5666666666666666654 456666666666666665333222 34456666666666553
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-33 Score=319.95 Aligned_cols=382 Identities=20% Similarity=0.156 Sum_probs=228.4
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCC-CCcCCCcCceEEEeCCCCCCccCCC-C
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPN-GLDYLPKKLRYLHWDTYPLRTLPSN-F 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp~~-~ 86 (618)
.+|.+++++..++... . ++|+.|++++|.+ ..++. .+..+ ++|++|++++|.++.++.. +
T Consensus 8 ~~~cs~~~L~~ip~~~-~--~~l~~L~Ls~n~l--------------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-P--TNITVLNLTHNQL--------------RRLPAANFTRY-SQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp EEECCSSCCSSCCSCS-C--TTCSEEECCSSCC--------------CCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHH
T ss_pred eeECCCCCcccccccc-C--CCCcEEECCCCCC--------------CCcCHHHHhCC-CcCcEEECCCCccCccCHHHH
Confidence 4566666666665432 2 5677777777664 33333 34444 3777777777777666433 3
Q ss_pred -CCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCC---CCCCcc
Q 046284 87 -KPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPL---ISGKVT 159 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~ 159 (618)
++++|++|++++|+++.+|. .+..+++|++|+|++|. +..++ .+.++++|++|++++|......+. ...+|+
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 67777777777777777764 46777777777777776 44444 466777777777777754433333 234666
Q ss_pred EEEccCCCCcccCcc-c--cCCCCCcEEecccCcCccchhh---------------------------------------
Q 046284 160 SLNLSKSAIEEVPSS-I--ECLTDLKKLNLKYCKRLKRIST--------------------------------------- 197 (618)
Q Consensus 160 ~L~L~~n~i~~l~~~-i--~~l~~L~~L~L~~~~~~~~l~~--------------------------------------- 197 (618)
+|++++|.++.++.. + ..+++|+.|++++|.+.+..|.
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 777777766655432 1 2345566666666554443333
Q ss_pred ------------hccCCCC--CcEEecCCccCccccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCC
Q 046284 198 ------------RFCKLRS--LVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSK 262 (618)
Q Consensus 198 ------------~~~~l~~--L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~ 262 (618)
.+..++. |++|++++|.+.+..+..++.+++|++|++++|.++.+ |..+.++++|++|++++|..
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 2322222 55555555554444444555555555555555555532 33455555555555554432
Q ss_pred cc-----ccCc----ccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC--------------CCCCCCeEec
Q 046284 263 LD-----KLPD----NIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK--------------GLAYLGHLDM 319 (618)
Q Consensus 263 ~~-----~lp~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~--------------~l~~L~~L~L 319 (618)
.+ .+|. .+..+++|+.|++++|.++.++...+..+++|++|+++++. ..++|+.|++
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 21 2222 45666777777777777777777767777778888777653 1246778888
Q ss_pred cCCCCCcC-CccccCCCCCCEEeCCCCCCc-cCc-ccccCCcccceeeccccccCCcCCC---CCCCccEEeccCCCCC-
Q 046284 320 RNCAVMEI-PQEIACLSSLTTLNLSGNSFE-SLP-ASIKQLSQLRSLHLEGCKMLQSLPE---LPLCLESLDLTGCNML- 392 (618)
Q Consensus 320 ~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~L~L~~~~~l~~lp~---l~~~L~~L~l~~c~~l- 392 (618)
++|.+..+ |..+..+++|+.|++++|.+. .+| ..+..+++|++|++++|+.....+. ..++|+.|++++|..-
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 88877774 556777888888888888876 455 5677788888888888875433322 2356777777776532
Q ss_pred -CcCCCCcc---ccccccccc
Q 046284 393 -RSLPELPL---CLHSLNATN 409 (618)
Q Consensus 393 -~~l~~~~~---~L~~L~i~~ 409 (618)
+.+|..+. +|+.|++.+
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCS
T ss_pred cccCCcccccCCCCCEEECCC
Confidence 34444333 344444444
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-34 Score=330.96 Aligned_cols=361 Identities=17% Similarity=0.196 Sum_probs=291.4
Q ss_pred cccccccCchhhccCccceEEEEeCCCCCCC-Cccccc---cccceEEcCCCCc--CCCcCceEEEeCCCCC-CccCCCC
Q 046284 14 KIKRINLDPGAFTNMSNMRLLKFYGIEKLPS-MSIEEH---LSYSKVQLPNGLD--YLPKKLRYLHWDTYPL-RTLPSNF 86 (618)
Q Consensus 14 ~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~-~~~~~~---~~~~~~~l~~~l~--~l~~~L~~L~l~~~~l-~~lp~~~ 86 (618)
.|.+..+ |..|.+|++|+.|++++|.+... +..... .......+|..+. .++ +|++|++++|.+ ..+|..+
T Consensus 434 ~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 434 TNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGG
T ss_pred cCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHH
Confidence 3556665 56899999999999999986210 000000 0000013888876 774 999999999985 5788877
Q ss_pred -CCCCceEEEccCCC-cee--ccccccccc-------cCcEEeccCCCCCcccCC---CCCCCCCcEEeccCCCCCCcCC
Q 046284 87 -KPKNLVALNLSCSK-VEQ--LWEGEKNFK-------YLSALSFEGCKSLRSFPS---NLHFVCPVTINFSYCVNLIEFP 152 (618)
Q Consensus 87 -~l~~L~~L~L~~n~-i~~--l~~~~~~l~-------~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~l~~~~~l~~~~ 152 (618)
++++|++|+|++|+ ++. +|..+..++ +|++|+|++|. +..+|. +..+++|+.|++++|... .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 89999999999998 885 787776666 99999999998 558887 889999999999998654 777
Q ss_pred C--CCCCccEEEccCCCCcccCccccCCCC-CcEEecccCcCccchhhhccCCCC--CcEEecCCccCccccchh---hh
Q 046284 153 L--ISGKVTSLNLSKSAIEEVPSSIECLTD-LKKLNLKYCKRLKRISTRFCKLRS--LVDLFLNGCVNLERFPEI---LE 224 (618)
Q Consensus 153 ~--~~~~L~~L~L~~n~i~~l~~~i~~l~~-L~~L~L~~~~~~~~l~~~~~~l~~--L~~L~L~~~~~~~~~~~~---~~ 224 (618)
. .+.+|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. +.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 2 234789999999999999999999999 999999999876 77887776654 999999999988766533 23
Q ss_pred --CCCCCCEEEecCcCCccCCccCC-CCCCCCEEEeccCCCccccCcccCC--------CccceEEEecCcccccCCcch
Q 046284 225 --KMEHLERINLNKTAITELPSSFE-NLPGLEELFVEDCSKLDKLPDNIGN--------LKCLFIISAVGSAISQLPSSS 293 (618)
Q Consensus 225 --~l~~L~~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~--------l~~L~~L~l~~n~l~~~~~~~ 293 (618)
.+++|+.|++++|.++.+|..+. .+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++.+|..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 34589999999999999998764 8899999999999776 66654433 349999999999999888665
Q ss_pred hhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCC------CCCc-cCcccccCCcccceeecc
Q 046284 294 VAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSG------NSFE-SLPASIKQLSQLRSLHLE 366 (618)
Q Consensus 294 ~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~------n~l~-~lp~~l~~l~~L~~L~L~ 366 (618)
. ...+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|+
T Consensus 748 ~-------------~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 748 R-------------ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp S-------------TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred h-------------hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 3 1257889999999999999999999999999999977 5555 788999999999999999
Q ss_pred ccccCCcCCC-CCCCccEEeccCCCCCCc
Q 046284 367 GCKMLQSLPE-LPLCLESLDLTGCNMLRS 394 (618)
Q Consensus 367 ~~~~l~~lp~-l~~~L~~L~l~~c~~l~~ 394 (618)
+|+. +.+|. ++++|+.|++++|+....
T Consensus 815 ~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 815 SNDI-RKVDEKLTPQLYILDIADNPNISI 842 (876)
T ss_dssp SSCC-CBCCSCCCSSSCEEECCSCTTCEE
T ss_pred CCCC-CccCHhhcCCCCEEECCCCCCCcc
Confidence 9987 88886 678999999999986553
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=312.85 Aligned_cols=363 Identities=16% Similarity=0.147 Sum_probs=276.4
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKP 88 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 88 (618)
.||+++|.+..+.+.+|.++++|++|++++|++. ...|..+..++ +|++|++++|.++.+|.. .+
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l 89 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-------------YLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PT 89 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-------------EEEGGGGTTCT-TCCEEECCSSCCCEEECC-CC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccC-------------CcChHHhhccc-CCCEEecCCCceeecCcc-cc
Confidence 5788888888888889999999999999998762 23356677774 899999999999999888 88
Q ss_pred CCceEEEccCCCcee--ccccccccccCcEEeccCCCCCcccCCCCCCCCC--cEEeccCCCC--CCcCCCCCC------
Q 046284 89 KNLVALNLSCSKVEQ--LWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVN--LIEFPLISG------ 156 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L--~~L~l~~~~~--l~~~~~~~~------ 156 (618)
++|++|++++|.++. +|..+..+++|++|++++|.. .. ..+..+++| ++|++++|.. ....|..+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch-hhccccccceeeEEEeecccccccccccccccccccce
Confidence 999999999999987 467889999999999999873 33 345666777 8888888765 333333332
Q ss_pred -----------------------CccEEEccCCC-------CcccCccccC---------------------------CC
Q 046284 157 -----------------------KVTSLNLSKSA-------IEEVPSSIEC---------------------------LT 179 (618)
Q Consensus 157 -----------------------~L~~L~L~~n~-------i~~l~~~i~~---------------------------l~ 179 (618)
+|+.|++++|. +....+.++. .+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 33444444443 1100001111 24
Q ss_pred CCcEEecccCcCccchhhhc-----cCCCCCcEEecCCccCccccc-hhhhCC---CCCCEEEecCcCCccCCccCCCCC
Q 046284 180 DLKKLNLKYCKRLKRISTRF-----CKLRSLVDLFLNGCVNLERFP-EILEKM---EHLERINLNKTAITELPSSFENLP 250 (618)
Q Consensus 180 ~L~~L~L~~~~~~~~l~~~~-----~~l~~L~~L~L~~~~~~~~~~-~~~~~l---~~L~~L~L~~n~i~~lp~~l~~l~ 250 (618)
+|++|++++|++.+.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..++. ...++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~ 324 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKIS 324 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCC
Confidence 78888888888777888877 8899999999999887 455 444444 678888888888876552 25788
Q ss_pred CCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc--chhhccCCCceEecCCCC-----------CCCCCCeE
Q 046284 251 GLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS--SSVAYSNRLGVLYFSRCK-----------GLAYLGHL 317 (618)
Q Consensus 251 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~~~-----------~l~~L~~L 317 (618)
+|++|++++|.+.+..|..++.+++|++|++++|.++.++. ..+..+++|++|+++++. .+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 88888888888888888888888888888888888886544 345578888888887765 56789999
Q ss_pred eccCCCCCc-CCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCC----CCCccEEeccCCCCC
Q 046284 318 DMRNCAVME-IPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPEL----PLCLESLDLTGCNML 392 (618)
Q Consensus 318 ~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l----~~~L~~L~l~~c~~l 392 (618)
++++|.+.. +|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+.. .+|.. .++|++|++++|+..
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 999999965 555443 7999999999999999988889999999999999754 67642 468999999999865
Q ss_pred Cc
Q 046284 393 RS 394 (618)
Q Consensus 393 ~~ 394 (618)
..
T Consensus 482 c~ 483 (520)
T 2z7x_B 482 CS 483 (520)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=314.81 Aligned_cols=380 Identities=21% Similarity=0.217 Sum_probs=256.8
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCccCCC-C
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTLPSN-F 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~-~ 86 (618)
.||+++|++..+.+.+|+++++||+|++++|.+ ..++ ..+..+ .+|++|++++|.++.+|.. +
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------------QSLALGAFSGL-SSLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------------CEECTTTTTTC-TTCCEEECTTSCCCCSTTCSC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcC--------------CccCHhhhcCc-cccccccccccccccCCCccc
Confidence 679999999999999999999999999999876 4454 456666 5999999999999988863 4
Q ss_pred -CCCCceEEEccCCCcee--ccccccccccCcEEeccCCCCCcccC--CCCCCCCC----cEEeccCCCCCCcCCCCCC-
Q 046284 87 -KPKNLVALNLSCSKVEQ--LWEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCP----VTINFSYCVNLIEFPLISG- 156 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L----~~L~l~~~~~l~~~~~~~~- 156 (618)
.+++|++|++++|.++. +|..+.++++|++|++++|. +..++ .+..+.+| +.|++++|......+..+.
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 88999999999999986 67889999999999999987 44432 34445555 6777777644332222222
Q ss_pred -CccEEEccCCC----------------------------------------------------------C-cccCcccc
Q 046284 157 -KVTSLNLSKSA----------------------------------------------------------I-EEVPSSIE 176 (618)
Q Consensus 157 -~L~~L~L~~n~----------------------------------------------------------i-~~l~~~i~ 176 (618)
+|+.|++++|. + ..++..+.
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 279 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence 35555554431 1 11234455
Q ss_pred CCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEE
Q 046284 177 CLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELF 256 (618)
Q Consensus 177 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~ 256 (618)
.+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+...... ..+++|++|+
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 6677777777776644 456656666 7777777777655 3343 3566677777777666643322 5667777777
Q ss_pred eccCCCcccc--CcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC-----------CCCCCCeEeccCCC
Q 046284 257 VEDCSKLDKL--PDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK-----------GLAYLGHLDMRNCA 323 (618)
Q Consensus 257 L~~~~~~~~l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~-----------~l~~L~~L~L~~n~ 323 (618)
+++|.+.+.. +..+..+++|++|++++|.+..++.. +..+++|+.|+++++. .+++|++|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 7777655432 55566677777777777777666655 4466777777766542 56677777777777
Q ss_pred CCc-CCccccCCCCCCEEeCCCCCCc--cCcccccCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCCcCCC
Q 046284 324 VME-IPQEIACLSSLTTLNLSGNSFE--SLPASIKQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLRSLPE 397 (618)
Q Consensus 324 l~~-~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~~l~~ 397 (618)
+.. .|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|+..+..|.. .++|++|++++|......+.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 766 4556677778888888887776 46777777778888888877765554532 35677888877754443333
Q ss_pred Cc---cccccccccccc
Q 046284 398 LP---LCLHSLNATNCN 411 (618)
Q Consensus 398 ~~---~~L~~L~i~~c~ 411 (618)
.+ ++|+.|++.+++
T Consensus 513 ~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhhcccCCcEEEecCCc
Confidence 33 345555555443
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=317.26 Aligned_cols=365 Identities=17% Similarity=0.132 Sum_probs=232.1
Q ss_pred eeEEEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCC-CCcc-
Q 046284 5 IEGIFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYP-LRTL- 82 (618)
Q Consensus 5 i~~i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~-l~~l- 82 (618)
+.+...|.+++....++. -.++|+.|++++|.+- ...+..+..+ .+|++|++++|. +..+
T Consensus 4 ~~~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~-------------~i~~~~~~~l-~~L~~LdLs~n~~~~~i~ 65 (844)
T 3j0a_A 4 FDGRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIR-------------TVTASSFPFL-EQLQLLELGSQYTPLTID 65 (844)
T ss_dssp TTTEEEEESCCCSSCCCS----SCTTCCEEEEESCCCC-------------EECSSSCSSC-CSCSEEEECTTCCCCEEC
T ss_pred EeceEEEccCCCCCCCCC----CCCCcCEEECCCCcCC-------------ccChhHCccc-ccCeEEeCCCCCCccccC
Confidence 345678889988888875 5589999999998862 3345677777 599999999994 5567
Q ss_pred CCCC-CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCcccCC---CCCCCCCcEEeccCCCCCCcCC----C
Q 046284 83 PSNF-KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLRSFPS---NLHFVCPVTINFSYCVNLIEFP----L 153 (618)
Q Consensus 83 p~~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~l~~~~~l~~~~----~ 153 (618)
|..| ++++|++|+|++|.++.+ |..+..+++|++|+|++|.....+|. +..+++|++|++++|......+ .
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 5666 899999999999999987 78999999999999999985554553 8899999999999996654333 2
Q ss_pred CCCCccEEEccCCCCccc-CccccCC--CCCcEEecccCcCccchhhhccCCCC------CcEEecCCcc----------
Q 046284 154 ISGKVTSLNLSKSAIEEV-PSSIECL--TDLKKLNLKYCKRLKRISTRFCKLRS------LVDLFLNGCV---------- 214 (618)
Q Consensus 154 ~~~~L~~L~L~~n~i~~l-~~~i~~l--~~L~~L~L~~~~~~~~l~~~~~~l~~------L~~L~L~~~~---------- 214 (618)
.+.+|+.|++++|.+..+ +..+..+ ++|+.|++++|.+.+..|..+..+.+ |++|++++|.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 356899999999999765 5566666 88999999988877666554444433 5666666553
Q ss_pred ----------------------------------------------------CccccchhhhCCCCCCEEEecCcCCccC
Q 046284 215 ----------------------------------------------------NLERFPEILEKMEHLERINLNKTAITEL 242 (618)
Q Consensus 215 ----------------------------------------------------~~~~~~~~~~~l~~L~~L~L~~n~i~~l 242 (618)
+.+..+..+..+++|+.|++++|.++.+
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 3333334444455555555555555533
Q ss_pred -CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC-----CCCCCCe
Q 046284 243 -PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK-----GLAYLGH 316 (618)
Q Consensus 243 -p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~-----~l~~L~~ 316 (618)
|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..++...+..+++|+.|+++++. .+++|+.
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~ 385 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSE
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcch
Confidence 3344555555555555555444445555555555555555555555555444455555555555443 3445555
Q ss_pred EeccCCCCCcCCccccCCCCCCEEeCCCCCCccCc--ccccCCcccceeeccccccCCcC----CCCCCCccEEeccCCC
Q 046284 317 LDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLP--ASIKQLSQLRSLHLEGCKMLQSL----PELPLCLESLDLTGCN 390 (618)
Q Consensus 317 L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~l----p~l~~~L~~L~l~~c~ 390 (618)
|++++|.+..+|.. ..+++.|++++|+++.++ ..+..+++|+.|++++|+..... +..+++|+.|++++|.
T Consensus 386 L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 386 IFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp EEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred hccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 55555555544432 223334444444443332 12335555666666655543211 1123445555555543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=308.41 Aligned_cols=376 Identities=16% Similarity=0.120 Sum_probs=294.7
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCcc-CCC
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTL-PSN 85 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~l-p~~ 85 (618)
-.+|++++.+..++...+ ++|+.|++++|.+ ..++ ..+..+ .+|++|++++|.++.+ |..
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i--------------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 64 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYI--------------SELWTSDILSL-SKLRILIISHNRIQYLDISV 64 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCC--------------CCCCHHHHTTC-TTCCEEECCSSCCCEEEGGG
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcc--------------cccChhhcccc-ccccEEecCCCccCCcChHH
Confidence 368999999888876554 8999999999886 3343 345566 4999999999999988 556
Q ss_pred C-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCc-ccC-CCCCCCCCcEEeccCCCCCCcCCCCCCCc--cE
Q 046284 86 F-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVNLIEFPLISGKV--TS 160 (618)
Q Consensus 86 ~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~-~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~~~L--~~ 160 (618)
| .+++|++|++++|+++.+|.. .+++|++|+|++|.... .+| .+..+++|++|++++|.........+.+| +.
T Consensus 65 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142 (520)
T ss_dssp GTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred hhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence 6 899999999999999999877 89999999999998443 344 68899999999999987554333455677 99
Q ss_pred EEccCCCC--c-ccCccc--------------------------cCCCCCcEEecccCc-------CccchhhhccCC--
Q 046284 161 LNLSKSAI--E-EVPSSI--------------------------ECLTDLKKLNLKYCK-------RLKRISTRFCKL-- 202 (618)
Q Consensus 161 L~L~~n~i--~-~l~~~i--------------------------~~l~~L~~L~L~~~~-------~~~~l~~~~~~l-- 202 (618)
|++++|.+ . ..|..+ ..+++|+.|++++|. ..+.++ .+..+
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 99999988 2 334333 347788888888875 333333 23333
Q ss_pred -------------------------CCCcEEecCCccCccccchhh-----hCCCCCCEEEecCcCCccCC-ccCCCC--
Q 046284 203 -------------------------RSLVDLFLNGCVNLERFPEIL-----EKMEHLERINLNKTAITELP-SSFENL-- 249 (618)
Q Consensus 203 -------------------------~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~lp-~~l~~l-- 249 (618)
++|++|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~ 300 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFS 300 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccc
Confidence 367888888888777888888 8999999999999999 777 344444
Q ss_pred -CCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC------------CCCCCCe
Q 046284 250 -PGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK------------GLAYLGH 316 (618)
Q Consensus 250 -~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~------------~l~~L~~ 316 (618)
.+|+.|++++|...... ....+++|++|++++|.++......+..+++|++|++++|. .+++|++
T Consensus 301 ~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 68999999999765432 12689999999999999998555566689999999999876 6889999
Q ss_pred EeccCCCCCc-CCcc-ccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccCCcCCC---CCCCccEEeccCCC
Q 046284 317 LDMRNCAVME-IPQE-IACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKMLQSLPE---LPLCLESLDLTGCN 390 (618)
Q Consensus 317 L~L~~n~l~~-~p~~-l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~---l~~~L~~L~l~~c~ 390 (618)
|++++|.+.. +|.. +..+++|+.|++++|.++ .+|..+. ++|+.|++++|+.. .+|. -.++|++|++++|.
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 9999999998 8875 778999999999999996 5555443 79999999999754 7775 25689999999995
Q ss_pred CCCcCCCC-cc---ccccccccccc
Q 046284 391 MLRSLPEL-PL---CLHSLNATNCN 411 (618)
Q Consensus 391 ~l~~l~~~-~~---~L~~L~i~~c~ 411 (618)
++.+|.. +. +|+.|++.+++
T Consensus 456 -l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 456 -LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCccCHHHhccCCcccEEECcCCC
Confidence 4567764 43 45566665543
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-32 Score=294.84 Aligned_cols=309 Identities=16% Similarity=0.213 Sum_probs=168.1
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~ 147 (618)
+|++|++++|.++.+|....+++|++|++++|.++.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~- 145 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT- 145 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-
Confidence 555555555555555542255555555555555555544 5555555555555554 4444445555555555555553
Q ss_pred CCcCC--CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhC
Q 046284 148 LIEFP--LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEK 225 (618)
Q Consensus 148 l~~~~--~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 225 (618)
+..++ ..+.+|+.|+++ +.+..++. +..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ ++.
T Consensus 146 l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~ 219 (466)
T 1o6v_A 146 ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGI 219 (466)
T ss_dssp ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccc
Confidence 22222 123355555554 33333332 55555566666665553332 2 24555556666666555544333 445
Q ss_pred CCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEec
Q 046284 226 MEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYF 305 (618)
Q Consensus 226 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 305 (618)
+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++
T Consensus 220 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred cCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 555666666665555543 34555556666666555444332 5555556666666655555443 223333333333
Q ss_pred CCCC--------CCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCC-C
Q 046284 306 SRCK--------GLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLP-E 376 (618)
Q Consensus 306 ~~~~--------~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~ 376 (618)
+++. .+++|+.|++++|.+.+++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+.....| .
T Consensus 295 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 372 (466)
T 1o6v_A 295 NENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLA 372 (466)
T ss_dssp CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhh
Confidence 3332 45667777777777666544 566777777777777776664 56667777777777776544443 1
Q ss_pred CCCCccEEeccCCCCC
Q 046284 377 LPLCLESLDLTGCNML 392 (618)
Q Consensus 377 l~~~L~~L~l~~c~~l 392 (618)
-.++|+.|++++|+..
T Consensus 373 ~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWT 388 (466)
T ss_dssp TCTTCCEEECCCEEEE
T ss_pred cCCCCCEEeccCCccc
Confidence 2346777777766543
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-32 Score=294.02 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=207.8
Q ss_pred eecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCC-ccC-CCC-
Q 046284 10 LDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLP-SNF- 86 (618)
Q Consensus 10 Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp-~~~- 86 (618)
++.++..+..++. + .++|++|++++|.+. ...|..+..++ +|++|++++|.+. .++ ..|
T Consensus 15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~-------------~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~ 76 (455)
T 3v47_A 15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIA-------------ELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFR 76 (455)
T ss_dssp EECCSSCCSSCCC--C--CTTCCEEECCSSCCC-------------EECTTTTSSCT-TCCEEECCCCSTTCEECTTTTT
T ss_pred cCcCCCCcccCCC--C--CCccCEEEecCCccC-------------cCChhHhccCc-cccEEECcCCcccceECccccc
Confidence 4455554544443 1 256666777666541 22244555553 6677777666664 443 334
Q ss_pred CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCcccC-C--CCCCCCCcEEeccCCCCCCcCCC----CCCCc
Q 046284 87 KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLRSFP-S--NLHFVCPVTINFSYCVNLIEFPL----ISGKV 158 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp-~--~~~l~~L~~L~l~~~~~l~~~~~----~~~~L 158 (618)
.+++|++|++++|+++.+ |..+..+++|++|+|++|.....++ . +..+++|++|++++|......|. ...+|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 566677777777666665 4566666677777776665332222 2 55666677777766654433333 23466
Q ss_pred cEEEccCCCCccc-CccccCC--CCCcEEecccCcCccchhhh--------ccCCCCCcEEecCCccCccccchhhhCC-
Q 046284 159 TSLNLSKSAIEEV-PSSIECL--TDLKKLNLKYCKRLKRISTR--------FCKLRSLVDLFLNGCVNLERFPEILEKM- 226 (618)
Q Consensus 159 ~~L~L~~n~i~~l-~~~i~~l--~~L~~L~L~~~~~~~~l~~~--------~~~l~~L~~L~L~~~~~~~~~~~~~~~l- 226 (618)
++|++++|.+..+ +..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+.+..|..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 6777777666654 3344433 56666777766654433221 2245667777777776666665555433
Q ss_pred --CCCCEEEecCcCCccCCc-----------cCC--CCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc
Q 046284 227 --EHLERINLNKTAITELPS-----------SFE--NLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 227 --~~L~~L~L~~n~i~~lp~-----------~l~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
++|+.|++++|.+..... .+. ..++|++|++++|.+.+..|..++.+++|+.|++++|.++.++.
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 566677766654432110 111 12567777777777777777777777777777777777776554
Q ss_pred chhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccC-cccccCCcccceeeccccc
Q 046284 292 SSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~ 369 (618)
..+ .++++|++|++++|.+.++ |..+..+++|+.|++++|+++.+ |..+..+++|++|++++|+
T Consensus 317 ~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 317 NAF--------------WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTT--------------TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hHh--------------cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 333 1456666666666666664 45566677777777777777655 4566677777777777766
Q ss_pred cCCcCCC---CCCCccEEeccCCCCCCcCC
Q 046284 370 MLQSLPE---LPLCLESLDLTGCNMLRSLP 396 (618)
Q Consensus 370 ~l~~lp~---l~~~L~~L~l~~c~~l~~l~ 396 (618)
.....++ -.++|++|++++|+.....|
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 4432222 23567777777776655544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.9e-33 Score=307.59 Aligned_cols=367 Identities=17% Similarity=0.197 Sum_probs=240.6
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCC-CcCCCcCceEEEeCCCCCCcc--CCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNG-LDYLPKKLRYLHWDTYPLRTL--PSN 85 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~l--p~~ 85 (618)
.||+++|++..+.+.+|.++++|++|++++|.+ ..++.. +..+ .+|++|++++|.++.+ |..
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--------------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--------------SSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------------CSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCS
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCCcc--------------CccCHHHhccC-CCCcEEECCCCcccccchhhh
Confidence 678999999999999999999999999999876 334443 5555 4999999999999854 555
Q ss_pred C-CCCCceEEEccCCC-ceecc-ccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCC----CCCC
Q 046284 86 F-KPKNLVALNLSCSK-VEQLW-EGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPL----ISGK 157 (618)
Q Consensus 86 ~-~l~~L~~L~L~~n~-i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~----~~~~ 157 (618)
+ .+++|++|++++|. +..++ ..+..+++|++|++++|......| .+..+++|++|++++|.. ..++. ...+
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~ 197 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSS 197 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTT
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhccc
Confidence 6 89999999999998 67776 578999999999999998554444 567788888888888753 22222 3567
Q ss_pred ccEEEccCCCCcccC---c-cccCCCCCcEEecccCcCccchh----hhccCCCCCcEEecCCccCccc-----------
Q 046284 158 VTSLNLSKSAIEEVP---S-SIECLTDLKKLNLKYCKRLKRIS----TRFCKLRSLVDLFLNGCVNLER----------- 218 (618)
Q Consensus 158 L~~L~L~~n~i~~l~---~-~i~~l~~L~~L~L~~~~~~~~l~----~~~~~l~~L~~L~L~~~~~~~~----------- 218 (618)
|+.|++++|.+..++ . ....+++|+.|++++|.+.+..+ ..+..+++|+.|++++|...+.
T Consensus 198 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 888888888887652 1 22446777777777776554332 2234456666666666554321
Q ss_pred ------------------------cchhhhCCCCCCEEEecCcCCccCCccC-CCCCCCCEEEeccCCCccccC---ccc
Q 046284 219 ------------------------FPEILEKMEHLERINLNKTAITELPSSF-ENLPGLEELFVEDCSKLDKLP---DNI 270 (618)
Q Consensus 219 ------------------------~~~~~~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~~~~~~~lp---~~l 270 (618)
++..+...++|++|++++|.++.+|..+ ..+++|++|++++|.+.+..| ..+
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 1112233456777777777777777655 457777777777777666553 335
Q ss_pred CCCccceEEEecCcccccCCc--chhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc
Q 046284 271 GNLKCLFIISAVGSAISQLPS--SSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 271 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (618)
+.+++|+.|++++|.++.++. ..+. .+++|++|++++|.+..+|..+..+++|+.|++++|.++
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILL--------------TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGG--------------GCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred hccccCcEEEccCCcccccccchhhhh--------------cCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 667777777777777766543 2233 345556666666666666666666666666666666666
Q ss_pred cCcccccCCcccceeeccccccCCcCCCCCCCccEEeccCCCCCCcCCCC--ccccccccccc
Q 046284 349 SLPASIKQLSQLRSLHLEGCKMLQSLPELPLCLESLDLTGCNMLRSLPEL--PLCLHSLNATN 409 (618)
Q Consensus 349 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~l~~c~~l~~l~~~--~~~L~~L~i~~ 409 (618)
.+|..+ .++|++|++++|+... ++...++|++|++++|. ++.+|.. +++|+.|++.+
T Consensus 424 ~l~~~~--~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 424 VVKTCI--PQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISR 482 (549)
T ss_dssp CCCTTS--CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCS
T ss_pred cccchh--cCCceEEECCCCChhh-hcccCChhcEEECCCCc-cCcCCCcccCccCCEEecCC
Confidence 555433 2456666666665332 33333456666666653 3344432 23445555544
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-32 Score=292.89 Aligned_cols=358 Identities=21% Similarity=0.218 Sum_probs=242.8
Q ss_pred CchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCC-ccCCCC-CCCC--------
Q 046284 21 DPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLPSNF-KPKN-------- 90 (618)
Q Consensus 21 ~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~-------- 90 (618)
.|+.+. .+.||.|++++|.+ ..+|..+..+ ++|++|++++|.+. .+|..+ .+.+
T Consensus 4 ~p~~~~-~~~L~~L~l~~n~l--------------~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 67 (454)
T 1jl5_A 4 NPRNVS-NTFLQEPLRHSSNL--------------TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67 (454)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHH
T ss_pred cccccc-cccchhhhcccCch--------------hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhh
Confidence 444453 58899999999876 7889888888 49999999999886 788776 5665
Q ss_pred -----ceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccC
Q 046284 91 -----LVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSK 165 (618)
Q Consensus 91 -----L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~ 165 (618)
+++|++++|.++.+|.. .++|++|++++|. ++.+|.. .++|++|++++| .+..++....+|++|++++
T Consensus 68 c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~--~~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~ 140 (454)
T 1jl5_A 68 CLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL--PQSLKSLLVDNN-NLKALSDLPPLLEYLGVSN 140 (454)
T ss_dssp HHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSS-CCSCCCSCCTTCCEEECCS
T ss_pred hhccCCCEEEecCCccccCCCC---cCCCCEEEccCCc-CCccccc--cCCCcEEECCCC-ccCcccCCCCCCCEEECcC
Confidence 49999999999988763 4789999999987 5567753 488999999987 4556666667999999999
Q ss_pred CCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCcc
Q 046284 166 SAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSS 245 (618)
Q Consensus 166 n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~ 245 (618)
|.++.+| .++.+++|++|++++|++.+ +|.. ..+|++|++++|.+.+ +| .++++++|++|++++|.++.+|..
T Consensus 141 n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 141 NQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 9999988 58999999999999998664 5543 3589999999988766 55 588999999999999999988764
Q ss_pred CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC------CCCCCCeEec
Q 046284 246 FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK------GLAYLGHLDM 319 (618)
Q Consensus 246 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~------~l~~L~~L~L 319 (618)
. ++|++|++++|.+. .+|. ++.+++|++|++++|.++.+|.. .++|+.|+++++. .+++|++|++
T Consensus 214 ~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~~~~~L~~L~l 284 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPELPQSLTFLDV 284 (454)
T ss_dssp C---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred c---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccCcccCcCCEEEC
Confidence 3 58999999999766 6774 88999999999999999887753 3667777776654 3356777777
Q ss_pred cCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCCCCCccEEeccCCCCCCcCCCCc
Q 046284 320 RNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPELPLCLESLDLTGCNMLRSLPELP 399 (618)
Q Consensus 320 ~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~l~~c~~l~~l~~~~ 399 (618)
++|.+..+|.. .++|+.|++++|.++.++.. .++|++|++++|+.. .+|..+++|+.|++++|. ++.+|..+
T Consensus 285 s~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~-l~~lp~~l 356 (454)
T 1jl5_A 285 SENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI-ELPALPPRLERLIASFNH-LAEVPELP 356 (454)
T ss_dssp CSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-CSCCCCCC
T ss_pred cCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccc-cccccCCcCCEEECCCCc-cccccchh
Confidence 77776665432 25677777777776655421 146777777776543 466666677777777663 34566555
Q ss_pred cccccccccccccccCCCCCCcccccc
Q 046284 400 LCLHSLNATNCNRLQSLPEIPSCLQEL 426 (618)
Q Consensus 400 ~~L~~L~i~~c~~l~~l~~~p~~L~~L 426 (618)
.+|+.|++.++ .+..+|.+|..+..|
T Consensus 357 ~~L~~L~L~~N-~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 357 QNLKQLHVEYN-PLREFPDIPESVEDL 382 (454)
T ss_dssp TTCCEEECCSS-CCSSCCCCCTTCCEE
T ss_pred hhccEEECCCC-CCCcCCCChHHHHhh
Confidence 56666666653 445555566555444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-32 Score=301.58 Aligned_cols=362 Identities=16% Similarity=0.110 Sum_probs=226.1
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEc-CCCCcCCCcCceEEEeCCCCCCccCCCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTLPSNFK 87 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~lp~~~~ 87 (618)
.||+++|.+..+.+.+|.++++|++|++++|.+ ..+ |..+..+ .+|++|++++|.++.+|.. .
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRI--------------RSLDFHVFLFN-QDLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--------------CEECTTTTTTC-TTCCEEECTTSCCCEECSC-C
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCC--------------CcCCHHHhCCC-CCCCEEECCCCcCCccCcc-c
Confidence 456666666666666677777777777776655 333 4445555 3677777777777777666 6
Q ss_pred CCCceEEEccCCCceecc--ccccccccCcEEeccCCCCCcccCCCCCCCCC--cEEeccCCCC--CCcCCCCCCCcc--
Q 046284 88 PKNLVALNLSCSKVEQLW--EGEKNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVN--LIEFPLISGKVT-- 159 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L--~~L~l~~~~~--l~~~~~~~~~L~-- 159 (618)
+++|++|++++|+++.++ ..+.++++|++|++++|.. .. ..+..+++| ++|++++|.. ....|..+..++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc-CchhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 677777777777776654 5666777777777777652 22 234444444 7777776654 222222222111
Q ss_pred --EEEccCCCCcc-cCc-cccCCCCCcEEecccC----------------------------cCccc----hhhhccCCC
Q 046284 160 --SLNLSKSAIEE-VPS-SIECLTDLKKLNLKYC----------------------------KRLKR----ISTRFCKLR 203 (618)
Q Consensus 160 --~L~L~~n~i~~-l~~-~i~~l~~L~~L~L~~~----------------------------~~~~~----l~~~~~~l~ 203 (618)
.+++++|.+.. ++. .+..+++|+.|++++| ...+. ++..+ ..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~ 276 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPR 276 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcc
Confidence 12222222211 010 1122333333333332 11110 11111 123
Q ss_pred CCcEEecCCccCccccchhh-----hCC--------------------------CCCCEEEecCcCCccCCccCCCCCCC
Q 046284 204 SLVDLFLNGCVNLERFPEIL-----EKM--------------------------EHLERINLNKTAITELPSSFENLPGL 252 (618)
Q Consensus 204 ~L~~L~L~~~~~~~~~~~~~-----~~l--------------------------~~L~~L~L~~n~i~~lp~~l~~l~~L 252 (618)
+|++|++++|.+.+.+|..+ ..+ .+|++|++++|.+..++. ...+++|
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L 355 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSF 355 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCc
Confidence 55555555555544444332 111 346677777776654431 2577888
Q ss_pred CEEEeccCCCccccCcccCCCccceEEEecCcccccCCc--chhhccCCCceEecCCCC-----------CCCCCCeEec
Q 046284 253 EELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS--SSVAYSNRLGVLYFSRCK-----------GLAYLGHLDM 319 (618)
Q Consensus 253 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~~~-----------~l~~L~~L~L 319 (618)
++|++++|.+.+..|..++.+++|+.|++++|.++.++. ..+..+++|+.|+++++. .+++|++|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 888888888888788888888888888888888887764 335577888888887654 5688999999
Q ss_pred cCCCCCc-CCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCCC----CCCccEEeccCCCCCC
Q 046284 320 RNCAVME-IPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPEL----PLCLESLDLTGCNMLR 393 (618)
Q Consensus 320 ~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l----~~~L~~L~l~~c~~l~ 393 (618)
++|.+.. +|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+.. .+|.. .++|+.|++++|+...
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9999875 444433 7999999999999999988889999999999999755 56642 4689999999997554
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=3.9e-31 Score=274.12 Aligned_cols=304 Identities=20% Similarity=0.253 Sum_probs=201.2
Q ss_pred hhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCce
Q 046284 23 GAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVE 102 (618)
Q Consensus 23 ~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~ 102 (618)
..+..+++|+.|+++++.+ ..++ ++..+ ++|++|++++|.++.+|....+++|++|++++|.++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i--------------~~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~ 101 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKV--------------ASIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT 101 (347)
T ss_dssp ECHHHHTTCSEEECCSSCC--------------CCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ccchhcccccEEEEeCCcc--------------ccch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCccc
Confidence 3466888999999998765 3343 35555 489999999999988887448899999999999988
Q ss_pred eccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCC--CCCCccEEEccCCCCcccCccccCCCC
Q 046284 103 QLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPL--ISGKVTSLNLSKSAIEEVPSSIECLTD 180 (618)
Q Consensus 103 ~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~--~~~~L~~L~L~~n~i~~l~~~i~~l~~ 180 (618)
.++ .+..+++|++|++++|. +..++.+..+++|++|++++|.....++. ...+|+.|++++|.+..++. +..+++
T Consensus 102 ~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~ 178 (347)
T 4fmz_A 102 DIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTD 178 (347)
T ss_dssp CCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred Cch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCC
Confidence 875 58889999999999987 66777788888999999988876654442 23466666777666666554 566666
Q ss_pred CcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccC
Q 046284 181 LKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDC 260 (618)
Q Consensus 181 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~ 260 (618)
|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC
Confidence 7777776665443322 5556666666666665554433 5566666666666666666655 666666666666666
Q ss_pred CCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc-CCccccCCCCCCE
Q 046284 261 SKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME-IPQEIACLSSLTT 339 (618)
Q Consensus 261 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~ 339 (618)
.+.+. ..+..+++|+.|++++|.++.++. .. .+++|++|++++|.+.. .+..+..+++|+.
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~---------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDISV-LN---------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GG---------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCChh-hc---------------CCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 54432 345566666666666666555421 11 34555666666666554 3344555666666
Q ss_pred EeCCCCCCccCcccccCCcccceeeccccc
Q 046284 340 LNLSGNSFESLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 340 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 369 (618)
|++++|.++.++. +..+++|++|++++|+
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEccCCccccccC-hhhhhccceeehhhhc
Confidence 6666666665543 5556666666666654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=1.3e-30 Score=280.60 Aligned_cols=341 Identities=19% Similarity=0.211 Sum_probs=279.3
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcC-CCCcCCCcCceEEEeCCCCCCcc-CCC
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLP-NGLDYLPKKLRYLHWDTYPLRTL-PSN 85 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~l-p~~ 85 (618)
-.||+++|.+..+.+.+|.++++|++|++++|.+. ..++ ..+..+ ++|++|++++|.+..+ |..
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-------------~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-------------LVIRNNTFRGL-SSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-------------CEECTTTTTTC-TTCCEEECTTCTTCEECTTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCccc-------------ceECccccccc-ccCCEEeCCCCccCccChhh
Confidence 36889999999999999999999999999998752 3444 445666 5999999999999877 566
Q ss_pred C-CCCCceEEEccCCCcee-cccc--ccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCCCCCcCCCCC----
Q 046284 86 F-KPKNLVALNLSCSKVEQ-LWEG--EKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVNLIEFPLIS---- 155 (618)
Q Consensus 86 ~-~l~~L~~L~L~~n~i~~-l~~~--~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~~~~~~---- 155 (618)
+ .+++|++|++++|+++. ++.. +..+++|++|+|++|......|. +..+++|++|++++|......+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 6 79999999999999986 3433 88999999999999985444464 7789999999999997655545443
Q ss_pred -CCccEEEccCCCCcccCcc---------ccCCCCCcEEecccCcCccchhhhccCC---CCCcEEecCCccCcccc---
Q 046284 156 -GKVTSLNLSKSAIEEVPSS---------IECLTDLKKLNLKYCKRLKRISTRFCKL---RSLVDLFLNGCVNLERF--- 219 (618)
Q Consensus 156 -~~L~~L~L~~n~i~~l~~~---------i~~l~~L~~L~L~~~~~~~~l~~~~~~l---~~L~~L~L~~~~~~~~~--- 219 (618)
.+++.|++++|.+..++.. +..+++|+.|++++|.+.+..|..+... ++|+.|++++|...+..
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 4688999999999887643 3466899999999999988888766544 89999999988654321
Q ss_pred -------chhhh--CCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccC
Q 046284 220 -------PEILE--KMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQL 289 (618)
Q Consensus 220 -------~~~~~--~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~ 289 (618)
+..+. ..++|++|++++|.++.+ |..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 11222 236899999999999964 67799999999999999999888888999999999999999999887
Q ss_pred CcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCcc-cccCCcccceeeccc
Q 046284 290 PSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLPA-SIKQLSQLRSLHLEG 367 (618)
Q Consensus 290 ~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~ 367 (618)
+...+ .++++|++|++++|.+..+ |..+..+++|++|++++|+++.+|. .+..+++|++|++++
T Consensus 339 ~~~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 339 DSRMF--------------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CGGGG--------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ChhHh--------------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 66554 2678888999999999885 7789999999999999999998885 468999999999999
Q ss_pred cccCCcCCC
Q 046284 368 CKMLQSLPE 376 (618)
Q Consensus 368 ~~~l~~lp~ 376 (618)
|+.....|.
T Consensus 405 N~l~~~~~~ 413 (455)
T 3v47_A 405 NPWDCSCPR 413 (455)
T ss_dssp SCBCCCTTT
T ss_pred CCcccCCCc
Confidence 998776663
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.4e-30 Score=291.97 Aligned_cols=126 Identities=18% Similarity=0.150 Sum_probs=106.5
Q ss_pred EEeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCC-CcCCCcCceEEEeCCCCCCccCCC-
Q 046284 8 IFLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNG-LDYLPKKLRYLHWDTYPLRTLPSN- 85 (618)
Q Consensus 8 i~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~lp~~- 85 (618)
-.||+++|.+..+.+.+|.++++||+|++++|++ ..++++ +..+ .+|++|++++|+++.+|..
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--------------~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------------QTIEDGAYQSL-SHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--------------CEECTTTTTTC-TTCCEEECTTCCCCEECGGG
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--------------CCcChhHhcCC-CCCCEEEccCCcCCCCCHHH
Confidence 3689999999999999999999999999999987 567665 5556 5999999999999999865
Q ss_pred C-CCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCc-ccC-CCCCCCCCcEEeccCCCCC
Q 046284 86 F-KPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVNL 148 (618)
Q Consensus 86 ~-~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~-~lp-~~~~l~~L~~L~l~~~~~l 148 (618)
| ++++|++|+|++|+++.++. .+.++++|++|+|++|.... .+| .+..+++|++|++++|...
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 5 79999999999999999874 58999999999999997322 233 4567899999999998543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-30 Score=280.14 Aligned_cols=308 Identities=15% Similarity=0.134 Sum_probs=170.9
Q ss_pred chhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCc
Q 046284 22 PGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKV 101 (618)
Q Consensus 22 ~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i 101 (618)
+..++++++|+.|++++|.+ ..+| ++..+ ++|++|++++|.++.+| ...+++|++|++++|++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l--------------~~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSI--------------TDMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCC--------------CCCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC
T ss_pred ccChhHcCCCCEEEccCCCc--------------ccCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC
Confidence 34556666666666666554 2233 34444 36666666666666665 22566666666666666
Q ss_pred eeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCC-CCCCCccEEEccCC-CCcccCccccCCC
Q 046284 102 EQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFP-LISGKVTSLNLSKS-AIEEVPSSIECLT 179 (618)
Q Consensus 102 ~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~-~~~~~L~~L~L~~n-~i~~l~~~i~~l~ 179 (618)
+.++ +..+++|++|++++|. ++.+| +..+++|++|++++|.... ++ ....+|+.|++++| .+..+ .++.++
T Consensus 98 ~~~~--~~~l~~L~~L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 98 TNLD--VTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp SCCC--CTTCTTCCEEECCSSC-CSCCC-CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred ceee--cCCCCcCCEEECCCCc-CCeec-CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccc--ccccCC
Confidence 6653 5566666666666665 44454 5666666666666664322 22 23446666666666 33444 355666
Q ss_pred CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEecc
Q 046284 180 DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVED 259 (618)
Q Consensus 180 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 259 (618)
+|+.|++++|.+.+ +| +..+++|++|++++|.+.+. .++.+++|++|++++|+++.+| +..+++|+.|++++
T Consensus 171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS
T ss_pred cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeC
Confidence 66666666665544 33 55666666666666665543 2556666666666666666665 56666666666666
Q ss_pred CCCccccCcccCCCccceEEEecCcccccCCcch--------hhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccc
Q 046284 260 CSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSS--------VAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEI 331 (618)
Q Consensus 260 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l 331 (618)
|.+.+.. ++.+++|+.|+++++.++.+.-.. ...+++|+.|++++|. .++.+....+.+..+ .+
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~---~l~~l~~~~~~L~~L--~l 314 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT---QLYLLDCQAAGITEL--DL 314 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT---TCCEEECTTCCCSCC--CC
T ss_pred CcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCc---ccceeccCCCcceEe--ch
Confidence 6555432 334455555555555444332211 1122333333333322 111122222222222 14
Q ss_pred cCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccC
Q 046284 332 ACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 332 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
..+++|+.|++++|+++.++ +..+++|+.|++++|+..
T Consensus 315 ~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCC
T ss_pred hhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCC
Confidence 45567777777777777663 666777777777776643
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.7e-30 Score=287.19 Aligned_cols=327 Identities=18% Similarity=0.156 Sum_probs=255.6
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccC--CCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLP--SNF 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp--~~~ 86 (618)
.||+++|++..+.+.+|.++++|++|++++|.+ ..+|.. .+ .+|++|++++|.++.+| ..|
T Consensus 80 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~ 142 (562)
T 3a79_B 80 VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL--------------QNISCC--PM-ASLRHLDLSFNDFDVLPVCKEF 142 (562)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECTTSCC--------------CEECSC--CC-TTCSEEECCSSCCSBCCCCGGG
T ss_pred EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC--------------CccCcc--cc-ccCCEEECCCCCccccCchHhh
Confidence 689999999999999999999999999999987 567766 45 59999999999999876 456
Q ss_pred -CCCCceEEEccCCCceeccccccccccC--cEEeccCCCC--CcccC----C-----------------------CCCC
Q 046284 87 -KPKNLVALNLSCSKVEQLWEGEKNFKYL--SALSFEGCKS--LRSFP----S-----------------------NLHF 134 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~~~~~~l~~L--~~L~Ls~~~~--l~~lp----~-----------------------~~~l 134 (618)
++++|++|++++|+++.. .+..+++| ++|++++|.. ....| . +..+
T Consensus 143 ~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 143 GNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp GGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSE
T ss_pred cccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccccc
Confidence 899999999999999873 45666666 9999999975 22222 1 1234
Q ss_pred CCCcEEeccCCCCC-----------CcC---------------------CC--CCCCccEEEccCCCCc-ccCccc----
Q 046284 135 VCPVTINFSYCVNL-----------IEF---------------------PL--ISGKVTSLNLSKSAIE-EVPSSI---- 175 (618)
Q Consensus 135 ~~L~~L~l~~~~~l-----------~~~---------------------~~--~~~~L~~L~L~~n~i~-~l~~~i---- 175 (618)
++|+.|++++|... ... +. ...+|++|++++|.+. .+|..+
T Consensus 221 ~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred ceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc
Confidence 55666666665200 000 00 0126777777777776 566554
Q ss_pred -cCCC--------------------------CCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCC
Q 046284 176 -ECLT--------------------------DLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEH 228 (618)
Q Consensus 176 -~~l~--------------------------~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 228 (618)
..++ +|+.|++++|.+.... ....+++|++|++++|.+.+..|..++.+++
T Consensus 301 ~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC
Confidence 3333 3555555555433211 0167899999999999999989999999999
Q ss_pred CCEEEecCcCCccCC---ccCCCCCCCCEEEeccCCCccccCc-ccCCCccceEEEecCcccccCCcchhhccCCCceEe
Q 046284 229 LERINLNKTAITELP---SSFENLPGLEELFVEDCSKLDKLPD-NIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLY 304 (618)
Q Consensus 229 L~~L~L~~n~i~~lp---~~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 304 (618)
|++|++++|.++.++ ..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.++.....
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------ 446 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR------------ 446 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS------------
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh------------
Confidence 999999999999765 5689999999999999998886665 588999999999999998743221
Q ss_pred cCCCCCC-CCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCccc-ccCCcccceeeccccccCCc
Q 046284 305 FSRCKGL-AYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPAS-IKQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 305 l~~~~~l-~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~~ 373 (618)
.+ ++|++|++++|.+..+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|+....
T Consensus 447 -----~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 447 -----CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -----SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred -----hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 22 689999999999999999988999999999999999999977 89999999999999986543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.5e-30 Score=280.89 Aligned_cols=332 Identities=17% Similarity=0.221 Sum_probs=283.2
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKP 88 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 88 (618)
.|+++++.+..++ .|..+++|++|++++|.+ ..++. +..+ .+|++|++++|.+..++....+
T Consensus 50 ~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l--------------~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l 111 (466)
T 1o6v_A 50 TLQADRLGIKSID--GVEYLNNLTQINFSNNQL--------------TDITP-LKNL-TKLVDILMNNNQIADITPLANL 111 (466)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCCEEECCSSCC--------------CCCGG-GTTC-TTCCEEECCSSCCCCCGGGTTC
T ss_pred EEecCCCCCccCc--chhhhcCCCEEECCCCcc--------------CCchh-hhcc-ccCCEEECCCCccccChhhcCC
Confidence 4567777777664 489999999999999876 33443 5566 4999999999999998874489
Q ss_pred CCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCC
Q 046284 89 KNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAI 168 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i 168 (618)
++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|+++++.........+.+|+.|++++|.+
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC
Confidence 999999999999999875 8999999999999997 77788899999999999975322111123456899999999999
Q ss_pred cccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCC
Q 046284 169 EEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFEN 248 (618)
Q Consensus 169 ~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~ 248 (618)
..++ .+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.++.++. +..
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhc
Confidence 8886 48889999999999998877655 77799999999999987653 467889999999999999998876 889
Q ss_pred CCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC--------CCCCCCeEecc
Q 046284 249 LPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK--------GLAYLGHLDMR 320 (618)
Q Consensus 249 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~--------~l~~L~~L~L~ 320 (618)
+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|. .+++|++|+++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 9999999999997766544 8899999999999999998876 5689999999999986 68899999999
Q ss_pred CCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCC
Q 046284 321 NCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQ 372 (618)
Q Consensus 321 ~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 372 (618)
+|.+..+ ..+..+++|+.|++++|+++.++. +..+++|+.|++++|+...
T Consensus 340 ~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 9999988 478899999999999999997775 8999999999999998654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.1e-30 Score=265.13 Aligned_cols=298 Identities=20% Similarity=0.177 Sum_probs=215.9
Q ss_pred cCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCC
Q 046284 67 KKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 146 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~ 146 (618)
++|++|+++++.+..+|....+++|++|++++|+++.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc
Confidence 4899999999999999875589999999999999999876 8899999999999996 7778888889999999998875
Q ss_pred CCCcCC--CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhh
Q 046284 147 NLIEFP--LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILE 224 (618)
Q Consensus 147 ~l~~~~--~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 224 (618)
. ..++ ....+|+.|++++|.....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +.
T Consensus 122 i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 196 (347)
T 4fmz_A 122 I-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196 (347)
T ss_dssp C-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GG
T ss_pred c-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--cc
Confidence 3 3333 23456777777777554444456777777777777776554433 6667777777777776554332 66
Q ss_pred CCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEe
Q 046284 225 KMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLY 304 (618)
Q Consensus 225 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 304 (618)
.+++|+.|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. .
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~----------- 261 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA-V----------- 261 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G-----------
T ss_pred CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh-H-----------
Confidence 67777777777777776655 6677777777777776554333 6677777777777777666531 1
Q ss_pred cCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccC-cccccCCcccceeeccccccCCcCC-CCCCCcc
Q 046284 305 FSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCKMLQSLP-ELPLCLE 382 (618)
Q Consensus 305 l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp-~l~~~L~ 382 (618)
..+++|++|++++|.+.+++ .+..+++|+.|++++|.++.. |..+..+++|++|++++|+.....| ...++|+
T Consensus 262 ----~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 262 ----KDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD 336 (347)
T ss_dssp ----TTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred ----hcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccc
Confidence 25677888888888877764 467788888888888888744 4667788888888888887554434 2346788
Q ss_pred EEeccCCCC
Q 046284 383 SLDLTGCNM 391 (618)
Q Consensus 383 ~L~l~~c~~ 391 (618)
+|++++|+.
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 888887753
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=7.3e-30 Score=276.43 Aligned_cols=288 Identities=23% Similarity=0.258 Sum_probs=191.8
Q ss_pred cCceEEEeCCCCCCccCC-CC-CCCCceEEEccCCCceec-cccccccccCcEEeccCCCCCcccCC--CCCCCCCcEEe
Q 046284 67 KKLRYLHWDTYPLRTLPS-NF-KPKNLVALNLSCSKVEQL-WEGEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTIN 141 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~ 141 (618)
.++++|++++|.++.++. .| .+++|++|+|++|.++.+ |..+.++++|++|+|++|. ++.+|. +.++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~-- 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTK-- 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCE--
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCE--
Confidence 456666666666665532 33 556666666666666654 4555666666666666654 444442 344444444
Q ss_pred ccCCCCCCcCCCCCCCccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccc
Q 046284 142 FSYCVNLIEFPLISGKVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFP 220 (618)
Q Consensus 142 l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 220 (618)
|++++|.+..+ +..+..+++|+.|++++|.+....+..+.++++|++|++++|.+.+..+
T Consensus 109 -------------------L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 109 -------------------LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp -------------------EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred -------------------EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 44455555554 4567788888888888888777777778888888888888888777777
Q ss_pred hhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCC
Q 046284 221 EILEKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNR 299 (618)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 299 (618)
..+..+++|+.|++++|.+..++. .+..+++|++|++++|...+.+|.......+|+.|++++|.++.++...+.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---- 245 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR---- 245 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT----
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc----
Confidence 778888888888888888886643 678888888888888888888887777777888888888888888765553
Q ss_pred CceEecCCCCCCCCCCeEeccCCCCCcCC-ccccCCCCCCEEeCCCCCCccC-cccccCCcccceeeccccccCCcCCC-
Q 046284 300 LGVLYFSRCKGLAYLGHLDMRNCAVMEIP-QEIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCKMLQSLPE- 376 (618)
Q Consensus 300 L~~L~l~~~~~l~~L~~L~L~~n~l~~~p-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~- 376 (618)
.+++|+.|++++|.+..++ ..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+.. .++.
T Consensus 246 ----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 314 (477)
T 2id5_A 246 ----------HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314 (477)
T ss_dssp ----------TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGG
T ss_pred ----------CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHh
Confidence 4455566666666666543 3455666666666666666644 455666666666666666533 2331
Q ss_pred ---CCCCccEEeccCCCC
Q 046284 377 ---LPLCLESLDLTGCNM 391 (618)
Q Consensus 377 ---l~~~L~~L~l~~c~~ 391 (618)
-.++|+.|++++|+.
T Consensus 315 ~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPL 332 (477)
T ss_dssp GBSCGGGCCEEECCSSCE
T ss_pred HcCCCcccCEEEccCCCc
Confidence 124566666666654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.1e-29 Score=272.62 Aligned_cols=302 Identities=17% Similarity=0.155 Sum_probs=251.6
Q ss_pred cCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEec
Q 046284 63 DYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINF 142 (618)
Q Consensus 63 ~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l 142 (618)
..+ ++|++|++++|.++.+|....+++|++|++++|+++.++ +..+++|++|++++|. ++.++ +..+++|++|++
T Consensus 39 ~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEEC
T ss_pred hHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEEC
Confidence 344 499999999999999985448999999999999999986 8899999999999998 66675 889999999999
Q ss_pred cCCCCCCcCC-CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccch
Q 046284 143 SYCVNLIEFP-LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPE 221 (618)
Q Consensus 143 ~~~~~l~~~~-~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 221 (618)
++|.. ..++ ....+|+.|++++|.++.++ ++.+++|++|++++|...+.++ +..+++|++|++++|.+.+ +|
T Consensus 114 ~~N~l-~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 114 DTNKL-TKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CSSCC-SCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC-
T ss_pred CCCcC-CeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec-
Confidence 99854 4444 34568999999999999985 8899999999999997777763 7889999999999998776 44
Q ss_pred hhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCc
Q 046284 222 ILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLG 301 (618)
Q Consensus 222 ~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 301 (618)
++.+++|+.|++++|.++.++ ++.+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.++.. .+++|+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l~~L~ 257 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TLSKLT 257 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TCTTCC
T ss_pred -cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HCCCCC
Confidence 788999999999999999884 8899999999999998777 66 88999999999999999998743 678899
Q ss_pred eEecCCCCCCCCCCeEeccCCCCCc-CCccccCCCCCCEEeCCCCCCc-cCcc--------cccCCcccceeeccccccC
Q 046284 302 VLYFSRCKGLAYLGHLDMRNCAVME-IPQEIACLSSLTTLNLSGNSFE-SLPA--------SIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 302 ~L~l~~~~~l~~L~~L~L~~n~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~--------~l~~l~~L~~L~L~~~~~l 371 (618)
.|+++. .+|+.|++++|.... +| ++.+++|+.|++++|... .+|. .+..+++|++|++++|+..
T Consensus 258 ~L~l~~----n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 258 TLHCIQ----TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp EEECTT----CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred EEeccC----CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 998875 468999999998655 54 567899999999999643 4442 2566778888888888754
Q ss_pred CcCC-CCCCCccEEeccCCCCC
Q 046284 372 QSLP-ELPLCLESLDLTGCNML 392 (618)
Q Consensus 372 ~~lp-~l~~~L~~L~l~~c~~l 392 (618)
. ++ .-.++|+.|++++|..-
T Consensus 332 ~-l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 332 E-LDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp C-CCCTTCTTCSEEECCSSCCC
T ss_pred c-cccccCCcCcEEECCCCCCC
Confidence 4 33 22457889998887543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-29 Score=266.03 Aligned_cols=302 Identities=16% Similarity=0.159 Sum_probs=179.6
Q ss_pred cCccceEEEEeCCCCCCCCccccccccceEEcCCCC-cCCCcCceEEEeCCCCCCccCC-CC-CCCCceEEEccCCCcee
Q 046284 27 NMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVALNLSCSKVEQ 103 (618)
Q Consensus 27 ~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~ 103 (618)
.+++||.|+++++.+ ..+|..+ ..+ ++|++|++++|.++.++. .| .+++|++|++++|.++.
T Consensus 43 ~l~~l~~l~l~~~~l--------------~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--------------RKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GGCCCSEEEEESCEE--------------SEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCceEEEecCCch--------------hhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc
Confidence 468899999999765 6677764 344 589999999999998875 45 79999999999999998
Q ss_pred cc-ccccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccCccccCCCC
Q 046284 104 LW-EGEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTD 180 (618)
Q Consensus 104 l~-~~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~ 180 (618)
++ ..+..+++|++|++++|. ++.+|. +..+++|++|++++|...... +..+..+++
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--------------------~~~~~~l~~ 166 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE--------------------DDTFQATTS 166 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCC--------------------TTTTSSCTT
T ss_pred CCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccC--------------------hhhccCCCC
Confidence 86 568899999999999997 667774 577888888888887543222 222344444
Q ss_pred CcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccC
Q 046284 181 LKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDC 260 (618)
Q Consensus 181 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~ 260 (618)
|+.|++++|.+... + +..+++|++|++++|.+.. +...++|++|++++|.++.+|.. ..++|+.|++++|
T Consensus 167 L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n 236 (390)
T 3o6n_A 167 LQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN 236 (390)
T ss_dssp CCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS
T ss_pred CCEEECCCCcCCcc-c--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCC
Confidence 44444444443322 1 2334444444444443322 11223455555555555444332 2345555555555
Q ss_pred CCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEE
Q 046284 261 SKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTL 340 (618)
Q Consensus 261 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L 340 (618)
.+.+. ..+..+++|+.|++++|.++.+++..+ ..+++|++|++++|.+..+|..+..+++|+.|
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--------------VKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG--------------TTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHc--------------cccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 44332 234455555555555555544432222 13445555555555555555555555666666
Q ss_pred eCCCCCCccCcccccCCcccceeeccccccCCcCCCCCCCccEEeccCCC
Q 046284 341 NLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPELPLCLESLDLTGCN 390 (618)
Q Consensus 341 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~l~~c~ 390 (618)
++++|+++.+|..+..+++|++|++++|+....-....++|+.|++++|+
T Consensus 301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 66666666666555566666666666665432222334456666666664
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-29 Score=265.32 Aligned_cols=293 Identities=16% Similarity=0.111 Sum_probs=159.4
Q ss_pred CceEEEeCCCCCCccCCCC--CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC-C-CCCCCCCcEEec
Q 046284 68 KLRYLHWDTYPLRTLPSNF--KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP-S-NLHFVCPVTINF 142 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~l 142 (618)
++++|+++++.++.+|..+ .+++|++|++++|.++.++ ..+..+++|++|+|++|. ++.++ . +..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEEC
Confidence 5666666666666666543 4566666666666666654 355666666666666665 33332 2 344455544444
Q ss_pred cCCCCCCcCCCCCCCccEEEccCCCCcccCcc-ccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccch
Q 046284 143 SYCVNLIEFPLISGKVTSLNLSKSAIEEVPSS-IECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPE 221 (618)
Q Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~-i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 221 (618)
++| .++.+|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+...
T Consensus 125 ~~n---------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 180 (390)
T 3o6n_A 125 ERN---------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--- 180 (390)
T ss_dssp CSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---
T ss_pred CCC---------------------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---
Confidence 443 22444443 35566666666666665555555566666666666666655443
Q ss_pred hhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCc
Q 046284 222 ILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLG 301 (618)
Q Consensus 222 ~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 301 (618)
.++.+++|+.|++++|.++.++ ..++|++|++++|.+... |. ...++|+.|++++|.++..+. +
T Consensus 181 ~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~~~-l-------- 244 (390)
T 3o6n_A 181 DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDTAW-L-------- 244 (390)
T ss_dssp CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCCGG-G--------
T ss_pred ccccccccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcccHH-H--------
Confidence 2344556666666666655432 224566666666654332 22 123556666666666554421 1
Q ss_pred eEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCC---C
Q 046284 302 VLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPE---L 377 (618)
Q Consensus 302 ~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---l 377 (618)
..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.+|..+..+++|++|++++|+.. .+|. .
T Consensus 245 -------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 245 -------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp -------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred -------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 1345566666666666553 55566666666666666666666655555666666666666432 3332 1
Q ss_pred CCCccEEeccCCCCCCcCCCCccccccccccc
Q 046284 378 PLCLESLDLTGCNMLRSLPELPLCLHSLNATN 409 (618)
Q Consensus 378 ~~~L~~L~l~~c~~l~~l~~~~~~L~~L~i~~ 409 (618)
.++|+.|++++|.....-...+++|+.|++.+
T Consensus 317 l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp HTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred cCcCCEEECCCCccceeCchhhccCCEEEcCC
Confidence 24566666666654332223344555555554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=266.85 Aligned_cols=310 Identities=15% Similarity=0.156 Sum_probs=187.1
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEc-CCCCcCCCcCceEEEeCCCCCCcc-CCCC
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQL-PNGLDYLPKKLRYLHWDTYPLRTL-PSNF 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~~~ 86 (618)
.++.+++.+..++... .++|+.|++++|.+ ..+ +..+..+ .+|++|++++|.++.+ |..|
T Consensus 15 ~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l--------------~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~ 76 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI---PTETRLLDLGKNRI--------------KTLNQDEFASF-PHLEELELNENIVSAVEPGAF 76 (477)
T ss_dssp EEECCSCCCSSCCSCC---CTTCSEEECCSSCC--------------CEECTTTTTTC-TTCCEEECTTSCCCEECTTTT
T ss_pred EEEeCCCCcCcCCCCC---CCCCcEEECCCCcc--------------ceECHhHccCC-CCCCEEECCCCccCEeChhhh
Confidence 3566666666666533 25789999999876 444 4566666 4999999999999887 5566
Q ss_pred -CCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEc
Q 046284 87 -KPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNL 163 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L 163 (618)
++++|++|+|++|+++.++. .+..+++|++|+|++|......+ .+..+++|++|++++|......
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------ 144 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS------------ 144 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC------------
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC------------
Confidence 78999999999999999885 47889999999999998444333 5677888888888877543211
Q ss_pred cCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc-cC
Q 046284 164 SKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT-EL 242 (618)
Q Consensus 164 ~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~l 242 (618)
+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|... .+
T Consensus 145 --------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 145 --------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp --------TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred --------hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 223444444444444444444433334444444555555444444444444444445555555443322 33
Q ss_pred CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCC
Q 046284 243 PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNC 322 (618)
Q Consensus 243 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n 322 (618)
|.......+|++|++++|.+....+..+..+++|+.|++++|.++.++...+ .++++|++|++++|
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------~~l~~L~~L~L~~n 282 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--------------HELLRLQEIQLVGG 282 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--------------TTCTTCCEEECCSS
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--------------cccccCCEEECCCC
Confidence 3333333455555555554332222344555555555555555554443322 13455555555556
Q ss_pred CCCcC-CccccCCCCCCEEeCCCCCCccCcc-cccCCcccceeecccccc
Q 046284 323 AVMEI-PQEIACLSSLTTLNLSGNSFESLPA-SIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 323 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~ 370 (618)
.+..+ |..+..+++|+.|+|++|+++.+|. .+..+++|++|++++|+.
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 55553 4556666777777777777766653 346667777777777664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-28 Score=273.70 Aligned_cols=300 Identities=16% Similarity=0.151 Sum_probs=174.3
Q ss_pred cCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCC-CC-CCCCceEEEccCCCceec
Q 046284 27 NMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPS-NF-KPKNLVALNLSCSKVEQL 104 (618)
Q Consensus 27 ~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l 104 (618)
.+++++.|++++|.+ ..+|..+..-.++|++|++++|.+..++. .| .+++|++|+|++|.++.+
T Consensus 49 ~l~~l~~l~l~~~~l--------------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--------------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp GGCCCSEEEESSCEE--------------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCceEEEeeCCCC--------------CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence 467889999988765 56676543322589999999999988775 45 789999999999999987
Q ss_pred c-ccccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCCCCCcCCC---CCCCccEEEccCCCCcccCccccCC
Q 046284 105 W-EGEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVNLIEFPL---ISGKVTSLNLSKSAIEEVPSSIECL 178 (618)
Q Consensus 105 ~-~~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~~L~L~~n~i~~l~~~i~~l 178 (618)
+ ..+..+++|++|+|++|. ++.+|. +..+++|++|++++|......|. .+.+|+.|++++|.+..++ ++.+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l 191 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLI 191 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGC
T ss_pred CHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhh
Confidence 6 456889999999999997 666664 57788888888888754332222 1234555555555555543 3445
Q ss_pred CCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEec
Q 046284 179 TDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVE 258 (618)
Q Consensus 179 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 258 (618)
++|+.|++++|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.++.. ..+..+++|+.|+++
T Consensus 192 ~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 192 PSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS 262 (597)
T ss_dssp TTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred hhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECC
Confidence 555555555554322 222345555555555443322111 13455555555555543 334555555555555
Q ss_pred cCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCC
Q 046284 259 DCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLT 338 (618)
Q Consensus 259 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~ 338 (618)
+|.+.+..|..++.+++|+.|++++|.++.++.... .+++|+.|+|++|.+..+|..+..+++|+
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---------------~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ---------------PIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS---------------CCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc---------------cCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 555555555555555555555555554444433221 34444444444444444444444444555
Q ss_pred EEeCCCCCCccCcccccCCcccceeeccccc
Q 046284 339 TLNLSGNSFESLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 339 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 369 (618)
.|+|++|.++.+| +..+++|+.|++++|+
T Consensus 328 ~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 5555555444443 3344444444444443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-28 Score=273.70 Aligned_cols=298 Identities=15% Similarity=0.153 Sum_probs=249.7
Q ss_pred cCceEEEeCCCCCCccCCCC--CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEe
Q 046284 67 KKLRYLHWDTYPLRTLPSNF--KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTIN 141 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~ 141 (618)
.+++.|+++++.+..+|..+ .+++|++|++++|.++.++ ..+..+++|++|+|++|. ++.+| .+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEE
Confidence 48999999999999999875 7999999999999999987 589999999999999998 55555 368899999999
Q ss_pred ccCCCCCCcCCC----CCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCc
Q 046284 142 FSYCVNLIEFPL----ISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNL 216 (618)
Q Consensus 142 l~~~~~l~~~~~----~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 216 (618)
+++|. +..+|. .+.+|+.|++++|.+..++. .++.+++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCS
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccc
Confidence 99985 445553 34689999999999988765 688999999999999987654 2 556889999999998765
Q ss_pred cccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhc
Q 046284 217 ERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAY 296 (618)
Q Consensus 217 ~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 296 (618)
+ +...++|+.|++++|.++.++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.++.+++..+
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-- 274 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-- 274 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG--
T ss_pred c-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh--
Confidence 4 345568999999999999877644 3689999999998776 3678889999999999999887755443
Q ss_pred cCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCC
Q 046284 297 SNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPE 376 (618)
Q Consensus 297 ~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 376 (618)
..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+....-+.
T Consensus 275 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~ 342 (597)
T 3oja_B 275 ------------VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342 (597)
T ss_dssp ------------TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred ------------cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChh
Confidence 26788889999999999998888889999999999999999999999999999999999986554345
Q ss_pred CCCCccEEeccCCCCC
Q 046284 377 LPLCLESLDLTGCNML 392 (618)
Q Consensus 377 l~~~L~~L~l~~c~~l 392 (618)
..++|+.|++++|+.-
T Consensus 343 ~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 343 THHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hcCCCCEEEeeCCCCC
Confidence 5678999999998753
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.4e-27 Score=240.68 Aligned_cols=282 Identities=18% Similarity=0.223 Sum_probs=185.4
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYC 145 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~ 145 (618)
++++++++++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|+|++|......| .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 68888888888888887653 678888898888888764 67888888888888887333323 4556666666666665
Q ss_pred CCCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc--ccchhh
Q 046284 146 VNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE--RFPEIL 223 (618)
Q Consensus 146 ~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~~~~~~ 223 (618)
. ++++|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+
T Consensus 111 ~---------------------l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 111 Q---------------------LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp C---------------------CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred c---------------------CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 3 344444333 566666666666655555556666777777777666542 455666
Q ss_pred hCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 224 EKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
..+++|++|++++|.++.+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.++.++...+.
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------- 237 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-------- 237 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------
T ss_pred cCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------
Confidence 777777777777777777766543 6777777777776666666777777777777777777766543331
Q ss_pred ecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCccc-cc------CCcccceeeccccccCC-cCC
Q 046284 304 YFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPAS-IK------QLSQLRSLHLEGCKMLQ-SLP 375 (618)
Q Consensus 304 ~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~~L~L~~~~~l~-~lp 375 (618)
.+++|++|++++|.+..+|..+..+++|+.|++++|+++.+|.. +. ..+.|+.|++++|+... .++
T Consensus 238 ------~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 238 ------NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp ------GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ------CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 45666667777777777777777777777777777777766532 21 23667777777776432 111
Q ss_pred -C---CCCCccEEeccCC
Q 046284 376 -E---LPLCLESLDLTGC 389 (618)
Q Consensus 376 -~---l~~~L~~L~l~~c 389 (618)
. -..+++.+++++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 1 2345667777665
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.5e-27 Score=243.92 Aligned_cols=280 Identities=16% Similarity=0.193 Sum_probs=150.6
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCccc-C-CCCCCCCCcEEeccC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSF-P-SNLHFVCPVTINFSY 144 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~l-p-~~~~l~~L~~L~l~~ 144 (618)
+++.++++++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|. ++.+ | .+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence 5677777777777777655 356777777777777764 466777777777777776 3333 3 456666677666666
Q ss_pred CCCCCcCCCC-CCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCcc--chhhhccCCCCCcEEecCCccCccccc
Q 046284 145 CVNLIEFPLI-SGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLK--RISTRFCKLRSLVDLFLNGCVNLERFP 220 (618)
Q Consensus 145 ~~~l~~~~~~-~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~ 220 (618)
|. +..+|.. ..+|++|++++|.+..++. .+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+.+ +|
T Consensus 112 n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~ 188 (332)
T 2ft3_A 112 NH-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP 188 (332)
T ss_dssp SC-CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC
T ss_pred Cc-CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC
Confidence 53 2233322 2356666666666666654 35666666666666665532 344444444 56666666555443 33
Q ss_pred hhhhCCCCCCEEEecCcCCccCC-ccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCC
Q 046284 221 EILEKMEHLERINLNKTAITELP-SSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNR 299 (618)
Q Consensus 221 ~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 299 (618)
..+. ++|++|++++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+.
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~----- 261 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP----- 261 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG-----
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh-----
Confidence 2222 45555555555555443 345555555555555555544444455555555555555555555544332
Q ss_pred CceEecCCCCCCCCCCeEeccCCCCCcCCcc-ccC------CCCCCEEeCCCCCCc--cC-cccccCCcccceeeccccc
Q 046284 300 LGVLYFSRCKGLAYLGHLDMRNCAVMEIPQE-IAC------LSSLTTLNLSGNSFE--SL-PASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 300 L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~-l~~------l~~L~~L~Ls~n~l~--~l-p~~l~~l~~L~~L~L~~~~ 369 (618)
.+++|++|++++|.+..++.. +.. .++|+.|++++|.+. .+ |..+..+++|+.|++++|+
T Consensus 262 ----------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 ----------DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----------GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----------cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 344455555555555443321 111 234555555555544 22 2344455555555555543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.3e-26 Score=238.42 Aligned_cols=274 Identities=14% Similarity=0.197 Sum_probs=216.6
Q ss_pred CCceEEEccCCCceeccccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCC
Q 046284 89 KNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKS 166 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n 166 (618)
.+++.++++++.++.+|..+. ++|+.|++++|. ++.++ .+..+++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n--------------------- 86 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN--------------------- 86 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS---------------------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC---------------------
Confidence 368889999999988886554 688889998886 55554 3556666666666655
Q ss_pred CCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCc---cC
Q 046284 167 AIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAIT---EL 242 (618)
Q Consensus 167 ~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~---~l 242 (618)
.++.+ |..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++ ..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 44555 678899999999999999865 5665553 89999999999999888889999999999999999997 44
Q ss_pred CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCC
Q 046284 243 PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNC 322 (618)
Q Consensus 243 p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n 322 (618)
+..+..+++|++|++++|.+. .+|..+. ++|+.|++++|.++.++...+ .++++|++|++++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~--------------~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASL--------------KGLNNLAKLGLSFN 226 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGG--------------TTCTTCCEEECCSS
T ss_pred hhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHh--------------cCCCCCCEEECCCC
Confidence 677889999999999999765 4665544 899999999999998765544 26788889999999
Q ss_pred CCCcCC-ccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCC----------CCCCccEEeccCCCC
Q 046284 323 AVMEIP-QEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPE----------LPLCLESLDLTGCNM 391 (618)
Q Consensus 323 ~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~----------l~~~L~~L~l~~c~~ 391 (618)
.+..++ ..+..+++|+.|++++|.++.+|..+..+++|++|++++|+.. .++. ..++|+.|++++|+.
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcc
Confidence 998865 4788899999999999999999999999999999999999854 3331 125789999999986
Q ss_pred CC--cCCCCccccccccc
Q 046284 392 LR--SLPELPLCLHSLNA 407 (618)
Q Consensus 392 l~--~l~~~~~~L~~L~i 407 (618)
.. ..|..+..++.+..
T Consensus 306 ~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CGGGSCGGGGTTCCCGGG
T ss_pred cccccCccccccccceeE
Confidence 43 22334444444433
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.8e-27 Score=241.84 Aligned_cols=260 Identities=14% Similarity=0.141 Sum_probs=191.8
Q ss_pred CCceEEEccCCCceeccccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCC---CCCCccEEEc
Q 046284 89 KNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPL---ISGKVTSLNL 163 (618)
Q Consensus 89 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~~L~L 163 (618)
.+++.++++++.++.+|..+. ++|+.|++++|. ++.++ .+.++++|++|++++|......|. .+.+|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 369999999999999997663 799999999998 55654 588999999999999864433333 3457888888
Q ss_pred cCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc--ccchhhhCCCCCCEEEecCcCCcc
Q 046284 164 SKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE--RFPEILEKMEHLERINLNKTAITE 241 (618)
Q Consensus 164 ~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~ 241 (618)
++|.++.+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+ +|++|++++|.++.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 8888888877665 788888888887776666667788888888888887743 556667776 78888888888888
Q ss_pred CCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccC
Q 046284 242 LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRN 321 (618)
Q Consensus 242 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~ 321 (618)
+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++...+. .+++|++|++++
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------------~l~~L~~L~L~~ 250 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--------------FLPTLRELHLDN 250 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--------------GCTTCCEEECCS
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--------------CCCCCCEEECCC
Confidence 776554 6788888888877776667777777888888887777776654331 456666777777
Q ss_pred CCCCcCCccccCCCCCCEEeCCCCCCccCcc-cccC------Ccccceeecccccc
Q 046284 322 CAVMEIPQEIACLSSLTTLNLSGNSFESLPA-SIKQ------LSQLRSLHLEGCKM 370 (618)
Q Consensus 322 n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~L~~~~~ 370 (618)
|.+..+|..+..+++|+.|++++|.++.+|. .+.. .++|+.|++++|+.
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 7777777777777777777777777776652 2222 34566666666654
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.4e-26 Score=259.27 Aligned_cols=364 Identities=22% Similarity=0.204 Sum_probs=288.9
Q ss_pred EeecccccccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCC-cCCCcCceEEEeCCCCCCccCCC-C
Q 046284 9 FLDLSKIKRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPSN-F 86 (618)
Q Consensus 9 ~Ldls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~~~l~~lp~~-~ 86 (618)
+||+++|++..+.+.+|.++++|++|++++|++ ..+|.+. ..+ .+|++|++++|.++.+|.. |
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--------------~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~ 144 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------------QSLALGAFSGL-SSLQKLVAVETNLASLENFPI 144 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------------CEECGGGGTTC-TTCCEEECTTSCCCCSTTCCC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcC--------------CCCCHHHhcCC-CCCCEEECCCCcCCCCChhhh
Confidence 689999999999999999999999999999987 6677654 445 5999999999999999865 5
Q ss_pred -CCCCceEEEccCCCcee--ccccccccccCcEEeccCCCCCcccC--C---------------------------CCCC
Q 046284 87 -KPKNLVALNLSCSKVEQ--LWEGEKNFKYLSALSFEGCKSLRSFP--S---------------------------NLHF 134 (618)
Q Consensus 87 -~l~~L~~L~L~~n~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp--~---------------------------~~~l 134 (618)
++++|++|++++|.++. +|..+..+++|++|++++|+ ++.++ . ....
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred hcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 89999999999999986 46788899999999999986 33221 0 0011
Q ss_pred CCCcEEeccCCCCC------------------------------Cc----------------------------------
Q 046284 135 VCPVTINFSYCVNL------------------------------IE---------------------------------- 150 (618)
Q Consensus 135 ~~L~~L~l~~~~~l------------------------------~~---------------------------------- 150 (618)
..++.+++.++... ..
T Consensus 224 ~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 224 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence 11223333222100 00
Q ss_pred -----------------CC--CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecC
Q 046284 151 -----------------FP--LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLN 211 (618)
Q Consensus 151 -----------------~~--~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 211 (618)
++ .....++.|++.++.+..++. ..+..|+.+++.++......+ ...+++|+.|+++
T Consensus 304 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls 379 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLS 379 (635)
T ss_dssp GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECC
T ss_pred hhcccccccccccccccccccccchhhhhhhcccccccCcCc--ccchhhhhcccccccCCCCcc--cccccccccchhh
Confidence 00 011246677777777766653 357889999999887554332 4568999999999
Q ss_pred CccCcc--ccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccC-cccCCCccceEEEecCccccc
Q 046284 212 GCVNLE--RFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLP-DNIGNLKCLFIISAVGSAISQ 288 (618)
Q Consensus 212 ~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~ 288 (618)
+|.... ..+..+..+.+|++|++..+.+..++..+..+++|+.+++.++......+ ..+..+++++.++++.|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 987753 45677788999999999999999888889999999999999887766554 457889999999999999999
Q ss_pred CCcchhhccCCCceEecCCCC-----------CCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCc-cccc
Q 046284 289 LPSSSVAYSNRLGVLYFSRCK-----------GLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLP-ASIK 355 (618)
Q Consensus 289 ~~~~~~~~~~~L~~L~l~~~~-----------~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~ 355 (618)
.+...+..++.++.|+++++. .+++|++|+|++|++..+ |..+..+++|++|+|++|+++.++ ..+.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 988888899999999998764 678999999999999995 677899999999999999999886 5689
Q ss_pred CCcccceeeccccccCCcCCC----CCCCccEEeccCCCCC
Q 046284 356 QLSQLRSLHLEGCKMLQSLPE----LPLCLESLDLTGCNML 392 (618)
Q Consensus 356 ~l~~L~~L~L~~~~~l~~lp~----l~~~L~~L~l~~c~~l 392 (618)
.+++|+.|+|++|+.....|+ ++++|+.|++++|+..
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999997766654 4678999999999754
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.3e-27 Score=242.03 Aligned_cols=246 Identities=18% Similarity=0.222 Sum_probs=149.2
Q ss_pred CCceEEEccCCCce---eccccccccccCcEEeccC-CCCCcccC-CCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEc
Q 046284 89 KNLVALNLSCSKVE---QLWEGEKNFKYLSALSFEG-CKSLRSFP-SNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNL 163 (618)
Q Consensus 89 ~~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L 163 (618)
.++++|++++|.++ .+|..+..+++|++|++++ |.....+| .+..+++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n------------------ 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT------------------ 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC------------------
Confidence 46777777777776 3666777777777777774 44332333 2333444444444333
Q ss_pred cCCCCc-ccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC-CCCEEEecCcCCc-
Q 046284 164 SKSAIE-EVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME-HLERINLNKTAIT- 240 (618)
Q Consensus 164 ~~n~i~-~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~- 240 (618)
.+. .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.++
T Consensus 112 ---~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 112 ---NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp ---CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred ---eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 223 4455566666666666666666656666666666666666666666656666666665 6666666666666
Q ss_pred cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEecc
Q 046284 241 ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMR 320 (618)
Q Consensus 241 ~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~ 320 (618)
.+|..+..++ |++|++++|.+.+..|..+..+++|+.|++++|.++..++... .+++|++|+++
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------------~l~~L~~L~Ls 252 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG---------------LSKNLNGLDLR 252 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC---------------CCTTCCEEECC
T ss_pred cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccc---------------ccCCCCEEECc
Confidence 4555565555 6666666666666666666666666666666666654333221 45666666666
Q ss_pred CCCCC-cCCccccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccCC
Q 046284 321 NCAVM-EIPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKMLQ 372 (618)
Q Consensus 321 ~n~l~-~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~ 372 (618)
+|.+. .+|..+..+++|+.|++++|+++ .+|.. ..+++|+.|++++|+.+.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 66666 36666666677777777777666 55543 666667777776666443
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=6.4e-29 Score=267.70 Aligned_cols=337 Identities=16% Similarity=0.163 Sum_probs=176.7
Q ss_pred EEEeecccccccccCchh-hccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCcc-C-
Q 046284 7 GIFLDLSKIKRINLDPGA-FTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL-P- 83 (618)
Q Consensus 7 ~i~Ldls~~~~~~l~~~~-f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p- 83 (618)
-..||++++++.+..... |..+++|+.|++++|.+- ......++..+...+ +|++|++++|.+... +
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~---------~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---------EARCKDISSALRVNP-ALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCC---------HHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHH
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCC---------HHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHH
Confidence 356788888766555444 888999999999987641 111113444455553 788999988887542 1
Q ss_pred CCC-CCC----CceEEEccCCCcee-----ccccccccccCcEEeccCCCCCccc-C----C--CCCCCCCcEEeccCCC
Q 046284 84 SNF-KPK----NLVALNLSCSKVEQ-----LWEGEKNFKYLSALSFEGCKSLRSF-P----S--NLHFVCPVTINFSYCV 146 (618)
Q Consensus 84 ~~~-~l~----~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~~l-p----~--~~~l~~L~~L~l~~~~ 146 (618)
..+ .++ +|++|++++|+++. ++..+..+++|++|++++|. ++.. + . ....++|++|++++|.
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 111 233 68888888888873 46777888888888888887 3321 1 0 2224567777776663
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhcc-----CCCCCcEEecCCccCccc---
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFC-----KLRSLVDLFLNGCVNLER--- 218 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~-----~l~~L~~L~L~~~~~~~~--- 218 (618)
...... ..++..+..+++|+.|++++|.+....+..+. ..++|++|++++|.+...
T Consensus 154 l~~~~~----------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 154 LSAASC----------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp CBGGGH----------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred CCHHHH----------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 221100 12233444455555555555554333222221 234555555555554432
Q ss_pred -cchhhhCCCCCCEEEecCcCCccC------CccCCCCCCCCEEEeccCCCccc----cCcccCCCccceEEEecCcccc
Q 046284 219 -FPEILEKMEHLERINLNKTAITEL------PSSFENLPGLEELFVEDCSKLDK----LPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 219 -~~~~~~~l~~L~~L~L~~n~i~~l------p~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
++..+..+++|++|++++|.++.. +..+..+++|++|++++|.+... ++..+..+++|+.|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 344455555555555555555421 11223455555555555544332 3444444555555555555544
Q ss_pred cCCcchhhc-----cCCCceEecCCCC--------------CCCCCCeEeccCCCCCcC-Cc----cccC-CCCCCEEeC
Q 046284 288 QLPSSSVAY-----SNRLGVLYFSRCK--------------GLAYLGHLDMRNCAVMEI-PQ----EIAC-LSSLTTLNL 342 (618)
Q Consensus 288 ~~~~~~~~~-----~~~L~~L~l~~~~--------------~l~~L~~L~L~~n~l~~~-p~----~l~~-l~~L~~L~L 342 (618)
......+.. .++|++|++++|. .+++|++|++++|.+.+. +. .+.. .++|++|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 222111110 1222222222221 234555555555555441 11 1111 455666666
Q ss_pred CCCCCc-----cCcccccCCcccceeecccccc
Q 046284 343 SGNSFE-----SLPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 343 s~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 370 (618)
++|.++ .+|..+..+++|++|++++|+.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 666655 4455555566666666666543
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.3e-25 Score=246.27 Aligned_cols=259 Identities=19% Similarity=0.222 Sum_probs=136.8
Q ss_pred ceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCC
Q 046284 69 LRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNL 148 (618)
Q Consensus 69 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l 148 (618)
+++|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++|. ++.+|. .+++|++|++++| .+
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSC-CC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCC-cC
Confidence 4444444444444444332 344444444444444433 23444444444443 333433 3344444444443 23
Q ss_pred CcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCC
Q 046284 149 IEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEH 228 (618)
Q Consensus 149 ~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 228 (618)
..+|..+.+|+.|++++|.++.+|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.+.. +| ..+++
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~ 182 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSG 182 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred CCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCC
Confidence 33333444555555555555555543 2555555555554332 222 23455556665555443 23 33455
Q ss_pred CCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCC
Q 046284 229 LERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC 308 (618)
Q Consensus 229 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 308 (618)
|+.|++++|.++.+|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.++.+|.
T Consensus 183 L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~----------------- 238 (622)
T 3g06_A 183 LQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPV----------------- 238 (622)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCC-----------------
T ss_pred CcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCC-----------------
Confidence 66666666666665542 356666666666433 3332 23566666666666666551
Q ss_pred CCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcC
Q 046284 309 KGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSL 374 (618)
Q Consensus 309 ~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 374 (618)
.+++|+.|++++|.+..+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|+..+..
T Consensus 239 -~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 239 -LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 34566667777777766665 456777777777777777767777777777777777654433
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=8.8e-27 Score=237.69 Aligned_cols=235 Identities=20% Similarity=0.269 Sum_probs=122.1
Q ss_pred CccEEEccCCCCc---ccCccccCCCCCcEEeccc-CcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEE
Q 046284 157 KVTSLNLSKSAIE---EVPSSIECLTDLKKLNLKY-CKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERI 232 (618)
Q Consensus 157 ~L~~L~L~~n~i~---~l~~~i~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 232 (618)
+++.|++++|.+. .+|..++.+++|++|++++ |.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4445555555544 3455555555555555553 45454555555555555555555555555555555555555555
Q ss_pred EecCcCCc-cCCccCCCCCCCCEEEeccCCCccccCcccCCCc-cceEEEecCcccccCCcchhhccCCCceEecCCC--
Q 046284 233 NLNKTAIT-ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLK-CLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC-- 308 (618)
Q Consensus 233 ~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-- 308 (618)
++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.++...+..+..++ |+.|+++++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 55555555 4455555555555555555555555555555554 555555555555522222221111 222222221
Q ss_pred --------CCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccCCcCCCC--
Q 046284 309 --------KGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKMLQSLPEL-- 377 (618)
Q Consensus 309 --------~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~l-- 377 (618)
..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+..+.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 1445555555556655554444555566666666666665 55555666666666666666555555543
Q ss_pred CCCccEEeccCCCCC
Q 046284 378 PLCLESLDLTGCNML 392 (618)
Q Consensus 378 ~~~L~~L~l~~c~~l 392 (618)
.++|+.|++++|+.+
T Consensus 290 l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 290 LQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGSCGGGTCSSSEE
T ss_pred ccccChHHhcCCCCc
Confidence 234555555555443
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6e-25 Score=242.89 Aligned_cols=267 Identities=21% Similarity=0.223 Sum_probs=222.9
Q ss_pred ccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccc
Q 046284 29 SNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGE 108 (618)
Q Consensus 29 ~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~ 108 (618)
.+++.|++++|.+ ..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++.+|.
T Consensus 40 ~~l~~L~ls~n~L--------------~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGL--------------TTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV-- 98 (622)
T ss_dssp HCCCEEECCSSCC--------------SCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--
T ss_pred CCCcEEEecCCCc--------------CccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--
Confidence 4689999999776 56666554 589999999999999998 67899999999999999886
Q ss_pred cccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEeccc
Q 046284 109 KNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKY 188 (618)
Q Consensus 109 ~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~ 188 (618)
.+++|++|+|++|. ++.+|. .+++|+.|++++| .+..+|..+.+|++|++++|.++.+|.. +.+|+.|++++
T Consensus 99 -~l~~L~~L~Ls~N~-l~~l~~--~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~ 170 (622)
T 3g06_A 99 -LPPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYN 170 (622)
T ss_dssp -CCTTCCEEEECSCC-CCCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred -CCCCCCEEECcCCc-CCCCCC--CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCC
Confidence 67999999999987 777776 6789999999988 4667888889999999999999988863 57899999999
Q ss_pred CcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCc
Q 046284 189 CKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPD 268 (618)
Q Consensus 189 ~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~ 268 (618)
|.+.+ +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|
T Consensus 171 N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 171 NQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC-
T ss_pred CCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC-
Confidence 88655 55 457899999999988765 443 347899999999999998864 5889999999996654 66
Q ss_pred ccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc
Q 046284 269 NIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 269 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~ 348 (618)
..+++|+.|++++|.++.+|. .+++|+.|++++|.+..+|..+..+++|+.|+|++|.++
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp~------------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLPM------------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred --CCCCcCcEEECCCCCCCcCCc------------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 466899999999999998875 257899999999999999999999999999999999998
Q ss_pred c-CcccccCC
Q 046284 349 S-LPASIKQL 357 (618)
Q Consensus 349 ~-lp~~l~~l 357 (618)
. .|..+..+
T Consensus 298 ~~~~~~l~~L 307 (622)
T 3g06_A 298 ERTLQALREI 307 (622)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHhc
Confidence 4 34444433
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.9e-26 Score=231.70 Aligned_cols=221 Identities=25% Similarity=0.370 Sum_probs=157.5
Q ss_pred CceEEEeCCCCCCccCCCC-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccC-CCCCCCCCcEEeccCC
Q 046284 68 KLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYC 145 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L~l~~~ 145 (618)
+++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|. ++.+| .+..+++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCC
Confidence 4455555555555554443 4455555555555555555445555555555555554 22333 3444455555555554
Q ss_pred CCCCcCCCC------------CCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCc
Q 046284 146 VNLIEFPLI------------SGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGC 213 (618)
Q Consensus 146 ~~l~~~~~~------------~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 213 (618)
.....+|.. +.+|+.|++++|.++.+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCC
Confidence 444444432 457888888888888899889999999999999988764 5666888999999999999
Q ss_pred cCccccchhhhCCCCCCEEEecCcCCc-cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCC
Q 046284 214 VNLERFPEILEKMEHLERINLNKTAIT-ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLP 290 (618)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~ 290 (618)
...+.+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..++++++|+.+++..+.+..+.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 999999999999999999999997655 77888899999999999999999999999999999999988877665544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.7e-25 Score=227.54 Aligned_cols=243 Identities=23% Similarity=0.296 Sum_probs=182.8
Q ss_pred eEEEeCCCCCCccCCCCCCCCceEEEccCCCceecccc-ccccccCcEEeccCCCCCccc----CCCCCCCCCcEEeccC
Q 046284 70 RYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEG-EKNFKYLSALSFEGCKSLRSF----PSNLHFVCPVTINFSY 144 (618)
Q Consensus 70 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~l----p~~~~l~~L~~L~l~~ 144 (618)
+.++.+++.++.+|..+. ++|++|++++|+++.++.. +..+++|++|+|++|. ++.+ +.+..+
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~---------- 77 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGT---------- 77 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSC----------
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccc----------
Confidence 456777777777777543 5788888888888877754 5777888888887775 2221 112222
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCccCccccchhh
Q 046284 145 CVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCVNLERFPEIL 223 (618)
Q Consensus 145 ~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~ 223 (618)
.+|++|++++|.+..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+
T Consensus 78 -----------~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 78 -----------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp -----------SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred -----------cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 34555555555667777778888888888888887666544 467788889999999888888888888
Q ss_pred hCCCCCCEEEecCcCCcc--CCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCc
Q 046284 224 EKMEHLERINLNKTAITE--LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLG 301 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 301 (618)
..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++...+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------- 219 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------- 219 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-------
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc-------
Confidence 888899999999988875 68888888999999999988877778888888889999998888887776543
Q ss_pred eEecCCCCCCCCCCeEeccCCCCCc-CCccccCC-CCCCEEeCCCCCCcc
Q 046284 302 VLYFSRCKGLAYLGHLDMRNCAVME-IPQEIACL-SSLTTLNLSGNSFES 349 (618)
Q Consensus 302 ~L~l~~~~~l~~L~~L~L~~n~l~~-~p~~l~~l-~~L~~L~Ls~n~l~~ 349 (618)
..+++|+.|++++|.+.. .|..+..+ ++|+.|++++|.++.
T Consensus 220 -------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 -------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -------TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred -------cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 256777888888888877 45567776 488888888888763
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=230.35 Aligned_cols=272 Identities=16% Similarity=0.200 Sum_probs=192.7
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSY 144 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~ 144 (618)
.....+.+++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|++++|. ++.++ .+.++++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCC
Confidence 44567888888888888653 488899999998888874 67888888888888886 44442 244555555555544
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCcc-ccCCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCcc-Cccccch
Q 046284 145 CVNLIEFPLISGKVTSLNLSKSAIEEVPSS-IECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCV-NLERFPE 221 (618)
Q Consensus 145 ~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~-i~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~-~~~~~~~ 221 (618)
|.++.++.. ++.+++|++|++++|.+.+..+ ..+.++++|++|++++|. .....+.
T Consensus 110 ---------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 110 ---------------------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp ---------------------SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred ---------------------CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 445666664 7788889999998887664333 367788888888888885 4444466
Q ss_pred hhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCC
Q 046284 222 ILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRL 300 (618)
Q Consensus 222 ~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 300 (618)
.++++++|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|+.|++++|.++.++.....
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----- 243 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----- 243 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----
Confidence 788888888888888888865 67788888888888888875433333344578888888888888766543221
Q ss_pred ceEecCCCCCCCCCCeEeccCCCCCc-----CCccccCCCCCCEEeCCCCCCccCcccc-cCCcccceeeccccccCCc
Q 046284 301 GVLYFSRCKGLAYLGHLDMRNCAVME-----IPQEIACLSSLTTLNLSGNSFESLPASI-KQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 301 ~~L~l~~~~~l~~L~~L~L~~n~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~~~~l~~ 373 (618)
.......++.++++++.+.. +|..+..+++|+.|++++|+++.+|..+ ..+++|++|++++|+....
T Consensus 244 ------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 244 ------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 11234556666666666654 6777788888888888888888888664 7788888888888865443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6e-25 Score=225.53 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=142.1
Q ss_pred CCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEec
Q 046284 179 TDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVE 258 (618)
Q Consensus 179 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 258 (618)
.+++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 44444444444432 33444444455555555554444 44555555555666666666666666666666666666666
Q ss_pred cCCCccccCcccC---------CCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCc
Q 046284 259 DCSKLDKLPDNIG---------NLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQ 329 (618)
Q Consensus 259 ~~~~~~~lp~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~ 329 (618)
+|...+.+|..+. .+++|++|++++|.++.+|..+. .+++|++|++++|.+..+|.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~---------------~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA---------------NLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG---------------GCTTCCEEEEESSCCCCCCG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc---------------CCCCCCEEEccCCCCCcCch
Confidence 6666666665544 37777777777777777765544 56677777777777777777
Q ss_pred cccCCCCCCEEeCCCCCCc-cCcccccCCcccceeeccccccCCcCCCC---CCCccEEeccCCCCCCcCCCCccccccc
Q 046284 330 EIACLSSLTTLNLSGNSFE-SLPASIKQLSQLRSLHLEGCKMLQSLPEL---PLCLESLDLTGCNMLRSLPELPLCLHSL 405 (618)
Q Consensus 330 ~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~l~~c~~l~~l~~~~~~L~~L 405 (618)
.++.+++|+.|++++|++. .+|..+..+++|++|+|++|+..+.+|.. .++|+.|++++|+.++.+|..+..|+.|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 7777888888888887665 66777788888888888888877777742 4578888888888888888777777666
Q ss_pred cccccc
Q 046284 406 NATNCN 411 (618)
Q Consensus 406 ~i~~c~ 411 (618)
.+..++
T Consensus 304 ~~l~l~ 309 (328)
T 4fcg_A 304 CIILVP 309 (328)
T ss_dssp CEEECC
T ss_pred eEEeCC
Confidence 665543
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=7.6e-27 Score=251.45 Aligned_cols=236 Identities=20% Similarity=0.193 Sum_probs=170.4
Q ss_pred CCccEEEccCCCCccc-----Ccc-ccCCCCCcEEecccCcCccc----hhhhccCCCCCcEEecCCccCccccchhhh-
Q 046284 156 GKVTSLNLSKSAIEEV-----PSS-IECLTDLKKLNLKYCKRLKR----ISTRFCKLRSLVDLFLNGCVNLERFPEILE- 224 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l-----~~~-i~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~- 224 (618)
.+|++|++++|.+... ... ....++|++|++++|.+... ++..+..+++|++|++++|.+....+..+.
T Consensus 113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 192 (461)
T 1z7x_W 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence 3556666666665432 222 22356899999999987763 466677789999999999987655444433
Q ss_pred ----CCCCCCEEEecCcCCcc-----CCccCCCCCCCCEEEeccCCCcccc-----CcccCCCccceEEEecCcccccC-
Q 046284 225 ----KMEHLERINLNKTAITE-----LPSSFENLPGLEELFVEDCSKLDKL-----PDNIGNLKCLFIISAVGSAISQL- 289 (618)
Q Consensus 225 ----~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~l-----p~~l~~l~~L~~L~l~~n~l~~~- 289 (618)
..++|++|++++|.++. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.++..
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 36799999999999985 5677788999999999999765432 22334689999999999988863
Q ss_pred ----CcchhhccCCCceEecCCCC---------------CCCCCCeEeccCCCCCc-----CCccccCCCCCCEEeCCCC
Q 046284 290 ----PSSSVAYSNRLGVLYFSRCK---------------GLAYLGHLDMRNCAVME-----IPQEIACLSSLTTLNLSGN 345 (618)
Q Consensus 290 ----~~~~~~~~~~L~~L~l~~~~---------------~l~~L~~L~L~~n~l~~-----~p~~l~~l~~L~~L~Ls~n 345 (618)
+.. +..+++|++|+++++. ..++|++|++++|.+.. ++..+..+++|++|++++|
T Consensus 273 ~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 273 CGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 332 3357889999998876 23689999999988875 4566777888999999999
Q ss_pred CCccC-cccc----cC-CcccceeeccccccCC----cCCCC---CCCccEEeccCCCCC
Q 046284 346 SFESL-PASI----KQ-LSQLRSLHLEGCKMLQ----SLPEL---PLCLESLDLTGCNML 392 (618)
Q Consensus 346 ~l~~l-p~~l----~~-l~~L~~L~L~~~~~l~----~lp~l---~~~L~~L~l~~c~~l 392 (618)
.++.. +..+ .. .++|++|++++|+... .+|.. .++|++|++++|+.-
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 88743 2222 22 6789999999887543 44432 467889999888643
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.3e-24 Score=216.81 Aligned_cols=201 Identities=17% Similarity=0.245 Sum_probs=134.2
Q ss_pred eEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCccc-C-CCCCCCCCcEEeccCCC
Q 046284 70 RYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSF-P-SNLHFVCPVTINFSYCV 146 (618)
Q Consensus 70 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~l-p-~~~~l~~L~~L~l~~~~ 146 (618)
+.++.+++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|. ++.+ | .+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 67778888888888654 468888888888888876 457788888888888876 4433 2 45556666666666654
Q ss_pred CCCcCCCCCCCccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEK 225 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 225 (618)
.+ ..+ +..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.
T Consensus 92 ~l--------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 92 QL--------------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp TC--------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred Cc--------------------cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence 33 333 445566677777777777666665666666777777777777666555556667
Q ss_pred CCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcc
Q 046284 226 MEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSS 292 (618)
Q Consensus 226 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 292 (618)
+++|++|++++|.++.+|. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++..
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 7777777777777776654 366667777777777766666566666666666666666655555443
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-25 Score=230.07 Aligned_cols=241 Identities=16% Similarity=0.112 Sum_probs=145.3
Q ss_pred CCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCC
Q 046284 88 PKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKS 166 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n 166 (618)
+++|++|++++|+++.++ ..+..+++|++|+|++|. +...+.+..+++|++|++++|. +..++. ..+|+.|++++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~-~~~L~~L~l~~n 109 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV-GPSIETLHAANN 109 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE-CTTCCEEECCSS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC-CCCcCEEECCCC
Confidence 445555555555555543 345555555555555554 3333334455555555555542 212211 135555555555
Q ss_pred CCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhh-hCCCCCCEEEecCcCCccCCcc
Q 046284 167 AIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEIL-EKMEHLERINLNKTAITELPSS 245 (618)
Q Consensus 167 ~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~L~~n~i~~lp~~ 245 (618)
.+..++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.++..
T Consensus 110 ~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 187 (317)
T 3o53_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (317)
T ss_dssp CCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred ccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc
Confidence 55555432 24566666666666655555555566666666666666555444444 3456666666666665554322
Q ss_pred CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCC
Q 046284 246 FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVM 325 (618)
Q Consensus 246 l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~ 325 (618)
. .+++|++|++++|.++.++..+. .+++|++|++++|.+.
T Consensus 188 -~------------------------~l~~L~~L~Ls~N~l~~l~~~~~---------------~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 188 -V------------------------VFAKLKTLDLSSNKLAFMGPEFQ---------------SAAGVTWISLRNNKLV 227 (317)
T ss_dssp -C------------------------CCTTCCEEECCSSCCCEECGGGG---------------GGTTCSEEECTTSCCC
T ss_pred -c------------------------ccccCCEEECCCCcCCcchhhhc---------------ccCcccEEECcCCccc
Confidence 2 24455555555555555544432 4567777777888888
Q ss_pred cCCccccCCCCCCEEeCCCCCCc--cCcccccCCcccceeeccccccCCc
Q 046284 326 EIPQEIACLSSLTTLNLSGNSFE--SLPASIKQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 326 ~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~ 373 (618)
.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.++.
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 88888888999999999999998 6778889999999999998765543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=6.6e-24 Score=215.69 Aligned_cols=201 Identities=19% Similarity=0.209 Sum_probs=103.7
Q ss_pred cCceEEEeCCCCCCccCCC-C-CCCCceEEEccCCCceec---cccccccccCcEEeccCCCCCcccC-CCCCCCCCcEE
Q 046284 67 KKLRYLHWDTYPLRTLPSN-F-KPKNLVALNLSCSKVEQL---WEGEKNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTI 140 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~~L~~L 140 (618)
.+|++|++++|.++.+|.. | .+++|++|++++|.++.+ +..+..+++|++|++++|. +..+| .+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 4677777777777777664 2 667777777777776654 3455566777777777775 33443 34555555555
Q ss_pred eccCCCCCCcCCCCCCCccEEEccCCCCcccC--ccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc-
Q 046284 141 NFSYCVNLIEFPLISGKVTSLNLSKSAIEEVP--SSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE- 217 (618)
Q Consensus 141 ~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~--~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~- 217 (618)
++++|.. +.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 107 ~l~~n~l---------------------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 107 DFQHSNL---------------------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp ECTTSEE---------------------ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ECCCCcc---------------------cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 5555422 2222 133444444444444444444444444444444444444444433
Q ss_pred ccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccC
Q 046284 218 RFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQL 289 (618)
Q Consensus 218 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~ 289 (618)
..|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 3344444444444444444444433 33444444444444444444443333444445555555555544443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4e-23 Score=221.06 Aligned_cols=242 Identities=20% Similarity=0.243 Sum_probs=170.1
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSY 144 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~ 144 (618)
..+.++..+..++.+|..+. ++++.|+|++|+++.++ ..+.++++|++|+|++|. +..++ .+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCC
Confidence 46678888888888887664 68889999999998876 678888889999988886 44443 344555555555555
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccch-h
Q 046284 145 CVNLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPE-I 222 (618)
Q Consensus 145 ~~~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~ 222 (618)
| .++.++. .+..+++|++|++++|.+....+..+.++++|++|++++|...+.++. .
T Consensus 122 n---------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 122 N---------------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp S---------------------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred C---------------------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 4 4455554 577788888888888887766666788888888888888766665544 6
Q ss_pred hhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCce
Q 046284 223 LEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGV 302 (618)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 302 (618)
+.++++|++|++++|.++.+|. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++...+
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------- 251 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-------- 251 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------
T ss_pred hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--------
Confidence 7888888888888888888874 7788888888888887777777777777777777777776665554333
Q ss_pred EecCCCCCCCCCCeEeccCCCCCcCCc-cccCCCCCCEEeCCCCCC
Q 046284 303 LYFSRCKGLAYLGHLDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSF 347 (618)
Q Consensus 303 L~l~~~~~l~~L~~L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l 347 (618)
.++++|++|+|++|.+..+|. .+..+++|+.|+|++|.+
T Consensus 252 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 252 ------DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ------TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ------cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 134445555555555555433 234455555555555544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=7.7e-23 Score=219.59 Aligned_cols=243 Identities=22% Similarity=0.279 Sum_probs=171.1
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSY 144 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~ 144 (618)
..+.++.++..++.+|..+. ++|++|+|++|+|+.++ ..+.++++|+.|+|++|. +..++ .+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCC
Confidence 45678888888888887653 68889999999888874 678888888888888886 44443 355555555555555
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccch-h
Q 046284 145 CVNLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPE-I 222 (618)
Q Consensus 145 ~~~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~ 222 (618)
| .++.++. .+..+++|++|++++|.+....+..+.++++|++|++++|...+.++. .
T Consensus 133 n---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 133 N---------------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp S---------------------CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred C---------------------cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 4 4455554 367788888888888887666666778888888888888766665554 5
Q ss_pred hhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCce
Q 046284 223 LEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGV 302 (618)
Q Consensus 223 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 302 (618)
+.++++|++|++++|.++.+|. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++...+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------- 262 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-------- 262 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--------
Confidence 7888888888888888888864 7788888888888888777777777777777777777777666544333
Q ss_pred EecCCCCCCCCCCeEeccCCCCCcCCc-cccCCCCCCEEeCCCCCCc
Q 046284 303 LYFSRCKGLAYLGHLDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 303 L~l~~~~~l~~L~~L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l~ 348 (618)
.++++|+.|+|++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 263 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 263 ------DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ------TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ------cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 134555555555555555443 2344555556665555443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=214.44 Aligned_cols=237 Identities=17% Similarity=0.137 Sum_probs=162.1
Q ss_pred CccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEec
Q 046284 157 KVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLN 235 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 235 (618)
+|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55566666666666655 56667777777777766666556666667777777777766665555556667777777777
Q ss_pred CcCCccCCc--cCCCCCCCCEEEeccCCCcc-ccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC---
Q 046284 236 KTAITELPS--SFENLPGLEELFVEDCSKLD-KLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK--- 309 (618)
Q Consensus 236 ~n~i~~lp~--~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~--- 309 (618)
+|.++.+|. .+..+++|++|++++|...+ ..+..+..+++|+.|++++|.++.+....+..+++|++|+++++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 777776665 56667777777777764333 334566667777777777777666655555566666666666654
Q ss_pred -------CCCCCCeEeccCCCCCcCCc----cccCCCCCCEEeCCCCCCc-----cCcccccCCcccceeeccccccCCc
Q 046284 310 -------GLAYLGHLDMRNCAVMEIPQ----EIACLSSLTTLNLSGNSFE-----SLPASIKQLSQLRSLHLEGCKMLQS 373 (618)
Q Consensus 310 -------~l~~L~~L~L~~n~l~~~p~----~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~l~~ 373 (618)
.+++|++|++++|.+..++. .....+.++.++++++.+. .+|..+..+++|++|++++|+.. .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 36788888888888887432 1234677888888888776 47788899999999999999754 6
Q ss_pred CCC----CCCCccEEeccCCCCCCc
Q 046284 374 LPE----LPLCLESLDLTGCNMLRS 394 (618)
Q Consensus 374 lp~----l~~~L~~L~l~~c~~l~~ 394 (618)
+|. -.++|++|++++|+....
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 664 246899999999976543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=3.6e-23 Score=207.99 Aligned_cols=220 Identities=25% Similarity=0.325 Sum_probs=176.5
Q ss_pred cEEeccCCCCCCcCCC-CCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc-
Q 046284 138 VTINFSYCVNLIEFPL-ISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV- 214 (618)
Q Consensus 138 ~~L~l~~~~~l~~~~~-~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~- 214 (618)
++++.++. .+..+|. ...+++.|++++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSS-CCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcC-CcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666654 4566665 34588999999999988874 57888999999999988777778888888999999999987
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcch
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSS 293 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 293 (618)
+....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 5555577888889999999999988876 556788899999999998877666667888889999999988888777654
Q ss_pred hhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeeccccccC
Q 046284 294 VAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 294 ~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l 371 (618)
+ .++++|++|++++|.+..+ |..+..+++|+.|++++|+++.+| ..+..+++|+.|++++|+..
T Consensus 173 ~--------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 F--------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp T--------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred h--------------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 3 2567788888888888874 778888899999999999988777 45788889999999988764
Q ss_pred C
Q 046284 372 Q 372 (618)
Q Consensus 372 ~ 372 (618)
.
T Consensus 239 c 239 (285)
T 1ozn_A 239 C 239 (285)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=8.9e-25 Score=242.93 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=162.6
Q ss_pred CceEEEeCCCCCCccCC-----CC-CCCCceEEEccCCCcee-----ccccccccccCcEEeccCCCCCcccC-CCCCCC
Q 046284 68 KLRYLHWDTYPLRTLPS-----NF-KPKNLVALNLSCSKVEQ-----LWEGEKNFKYLSALSFEGCKSLRSFP-SNLHFV 135 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~-----~~-~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~~lp-~~~~l~ 135 (618)
+|++|++++|.+..... .. .+++|++|++++|.++. ++..+..+++|++|++++|. +..+| .+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhh
Confidence 66677776665433221 11 45667777777666652 33344566677777777765 22333 344566
Q ss_pred CCcEEeccCCCCCCc---C---CCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchh-hhccCCCCCcEE
Q 046284 136 CPVTINFSYCVNLIE---F---PLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDL 208 (618)
Q Consensus 136 ~L~~L~l~~~~~l~~---~---~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L 208 (618)
+|++|+++++..... . -....+|+.|+++++....+|..+..+++|++|++++|.+..... ..+..+++|++|
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 677777664322211 1 112346777777776666667666777777777777777433222 335667777777
Q ss_pred ecCCccCccccchhhhCCCCCCEEEecC-----------cCCc--cCCccCCCCCCCCEEEeccCCCccccCcccCC-Cc
Q 046284 209 FLNGCVNLERFPEILEKMEHLERINLNK-----------TAIT--ELPSSFENLPGLEELFVEDCSKLDKLPDNIGN-LK 274 (618)
Q Consensus 209 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~-----------n~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~-l~ 274 (618)
+++++.....++.....+++|++|++++ +.++ .++.....+++|++|+++.+.+.+..+..++. ++
T Consensus 324 ~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp EEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred eccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 7774433334445556677777777772 4444 12233345677777777666555554444444 67
Q ss_pred cceEEEec----CcccccCCcc-----hhhccCCCceEecCCCC-------------CCCCCCeEeccCCCCCc--CCcc
Q 046284 275 CLFIISAV----GSAISQLPSS-----SVAYSNRLGVLYFSRCK-------------GLAYLGHLDMRNCAVME--IPQE 330 (618)
Q Consensus 275 ~L~~L~l~----~n~l~~~~~~-----~~~~~~~L~~L~l~~~~-------------~l~~L~~L~L~~n~l~~--~p~~ 330 (618)
+|+.|+++ .+.++..|.. .+..+++|+.|+++.|. .+++|++|++++|.+++ ++..
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 77777775 4455554322 12345555555554322 24445555555554443 2333
Q ss_pred ccCCCCCCEEeCCCCCCc--cCcccccCCcccceeeccccc
Q 046284 331 IACLSSLTTLNLSGNSFE--SLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 331 l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~ 369 (618)
+..+++|+.|+|++|.++ .++..+..+++|++|+|++|+
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 344455555555555443 123333344455555555554
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.8e-22 Score=214.43 Aligned_cols=239 Identities=20% Similarity=0.203 Sum_probs=202.8
Q ss_pred CcEEeccCCCCCCcCCCCC-CCccEEEccCCCCcccC-ccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc
Q 046284 137 PVTINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEVP-SSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV 214 (618)
Q Consensus 137 L~~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l~-~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 214 (618)
...++..+. .+..+|..+ .+++.|+|++|.|..++ ..+..+++|++|+|++|.+....+..|.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCC-CcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 456676653 677788654 58999999999999886 578999999999999999888888889999999999999998
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCc-ccCCCccceEEEecCcccccCCcc
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPD-NIGNLKCLFIISAVGSAISQLPSS 292 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 292 (618)
+....+..+..+++|++|++++|.++.++. .+..+++|++|++++|...+.++. .+..+++|+.|++++|.++.+|..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 887777789999999999999999998865 688999999999999887777665 688999999999999999988742
Q ss_pred hhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeecccccc
Q 046284 293 SVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~ 370 (618)
..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.++ ..+..+++|+.|+|++|+.
T Consensus 204 ----------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 204 ----------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ----------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ----------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 2678899999999999885 678889999999999999999764 6788999999999999975
Q ss_pred CCcCCCC---CCCccEEeccCCCCC
Q 046284 371 LQSLPEL---PLCLESLDLTGCNML 392 (618)
Q Consensus 371 l~~lp~l---~~~L~~L~l~~c~~l 392 (618)
....++. .++|+.|++++|+..
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 5433332 468999999998753
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.8e-22 Score=215.18 Aligned_cols=237 Identities=24% Similarity=0.237 Sum_probs=202.6
Q ss_pred CcEEeccCCCCCCcCCCCC-CCccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc
Q 046284 137 PVTINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV 214 (618)
Q Consensus 137 L~~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 214 (618)
...++.++. .+..+|..+ .+++.|+|++|.|+.+ +..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~-~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCC-CcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456666654 567777654 5899999999999988 5578999999999999999888888889999999999999999
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCc-ccCCCccceEEEecCcccccCCcc
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPD-NIGNLKCLFIISAVGSAISQLPSS 292 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 292 (618)
+....+..+..+++|++|++++|.++.+|. .+..+++|++|++++|...+.++. .+..+++|+.|++++|.++.++..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc
Confidence 888778889999999999999999998865 688999999999999888877765 588999999999999999987642
Q ss_pred hhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccC-cccccCCcccceeecccccc
Q 046284 293 SVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESL-PASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~ 370 (618)
..+++|++|++++|.+..+ |..+..+++|+.|++++|+++.+ |..+..+++|+.|+|++|+.
T Consensus 215 ----------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 215 ----------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp ----------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 2678899999999999985 67889999999999999999966 46788999999999999975
Q ss_pred CCcCC-CC---CCCccEEeccCCCC
Q 046284 371 LQSLP-EL---PLCLESLDLTGCNM 391 (618)
Q Consensus 371 l~~lp-~l---~~~L~~L~l~~c~~ 391 (618)
. .+| +. .++|+.|++++|+.
T Consensus 279 ~-~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 279 S-SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp S-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred C-ccChHHhccccCCCEEEccCCCc
Confidence 4 444 32 46899999999864
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1e-24 Score=222.27 Aligned_cols=216 Identities=19% Similarity=0.243 Sum_probs=155.8
Q ss_pred ccEEEccCCCCcc--cCcccc-------CCCCCcEEecccCcCccchhhhc--cCCCCCcEEecCCccCccccchhhhCC
Q 046284 158 VTSLNLSKSAIEE--VPSSIE-------CLTDLKKLNLKYCKRLKRISTRF--CKLRSLVDLFLNGCVNLERFPEILEKM 226 (618)
Q Consensus 158 L~~L~L~~n~i~~--l~~~i~-------~l~~L~~L~L~~~~~~~~l~~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l 226 (618)
++.|++++|.+.. +|..+. .+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5555666666543 454444 68888888888888887777765 7888888888888887776 7777766
Q ss_pred -----CCCCEEEecCcCCccCC-ccCCCCCCCCEEEeccCCCccc--cCccc--CCCccceEEEecCcccccCCc---ch
Q 046284 227 -----EHLERINLNKTAITELP-SSFENLPGLEELFVEDCSKLDK--LPDNI--GNLKCLFIISAVGSAISQLPS---SS 293 (618)
Q Consensus 227 -----~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~--lp~~l--~~l~~L~~L~l~~n~l~~~~~---~~ 293 (618)
++|++|++++|.++.++ ..++.+++|++|++++|...+. ++..+ ..+++|++|++++|.++.++. ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 88888888888888776 6788888888888888877654 33333 788888888888888874432 22
Q ss_pred hhccCCCceEecCCCCCCCCCCeEeccCCCCCcCC--ccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccC
Q 046284 294 VAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIP--QEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 294 ~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
+. .+++|++|++++|.+...+ ..+..+++|+.|++++|+++.+|..+. ++|++|++++|+..
T Consensus 224 ~~--------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 224 AA--------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp HH--------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred Hh--------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence 21 4567777777777777743 345557788888888888887777665 78888888887643
Q ss_pred CcCCCC--CCCccEEeccCCCC
Q 046284 372 QSLPEL--PLCLESLDLTGCNM 391 (618)
Q Consensus 372 ~~lp~l--~~~L~~L~l~~c~~ 391 (618)
.+|.+ .++|++|++++|+.
T Consensus 288 -~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 288 -RNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -SCCCTTTSCEEEEEECTTCTT
T ss_pred -CChhHhhCCCCCEEeccCCCC
Confidence 33542 35678888887754
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.8e-24 Score=217.90 Aligned_cols=212 Identities=12% Similarity=0.100 Sum_probs=123.7
Q ss_pred CceEEEeCCCCCCccCC-CC-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCC
Q 046284 68 KLRYLHWDTYPLRTLPS-NF-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYC 145 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~ 145 (618)
+|++|++++|.++.++. .+ .+++|++|++++|+++.++. +..+++|++|++++|. ++.++ ..++|++|++++|
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n 109 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANN 109 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCC
Confidence 44444444444444332 22 44445555555554444332 4444455555555443 33332 1244555555554
Q ss_pred CCCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhc-cCCCCCcEEecCCccCccccchhh
Q 046284 146 VNLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRF-CKLRSLVDLFLNGCVNLERFPEIL 223 (618)
Q Consensus 146 ~~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L~~L~L~~~~~~~~~~~~~ 223 (618)
......+..+.+|+.|++++|.++.++. .++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +. .
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~ 187 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q 187 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-c
Confidence 4333333344567777777777776644 56777888888888887776666555 3577888888888776554 22 2
Q ss_pred hCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc
Q 046284 224 EKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
..+++|++|++++|.++.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 188 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 3477788888888888877777777777777777777554 45555655555555555555554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.1e-23 Score=223.34 Aligned_cols=235 Identities=16% Similarity=0.107 Sum_probs=138.3
Q ss_pred CceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCC
Q 046284 90 NLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAI 168 (618)
Q Consensus 90 ~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i 168 (618)
+|++|+|++|.++.++ ..+..+++|++|+|++|. +...+++..+++|++|++++|. +..++.. .+|+.|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcCCcC
Confidence 4444555555444442 344445555555555544 2222224444444444444442 2111111 3455555555555
Q ss_pred cccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhh-CCCCCCEEEecCcCCccCCccCC
Q 046284 169 EEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILE-KMEHLERINLNKTAITELPSSFE 247 (618)
Q Consensus 169 ~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~l~ 247 (618)
..++.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.++.+|. ..
T Consensus 112 ~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~ 188 (487)
T 3oja_A 112 SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QV 188 (487)
T ss_dssp CCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CC
T ss_pred CCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cc
Confidence 555432 346666677766666666665666666666666666666665555554 56666666666666655533 22
Q ss_pred CCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC
Q 046284 248 NLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI 327 (618)
Q Consensus 248 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~ 327 (618)
.+++| +.|++++|.++.+|+.+. .+++|+.|++++|.+..+
T Consensus 189 ~l~~L------------------------~~L~Ls~N~l~~~~~~~~---------------~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 189 VFAKL------------------------KTLDLSSNKLAFMGPEFQ---------------SAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp CCTTC------------------------CEEECCSSCCCEECGGGG---------------GGTTCSEEECTTSCCCEE
T ss_pred cCCCC------------------------CEEECCCCCCCCCCHhHc---------------CCCCccEEEecCCcCccc
Confidence 34444 444444455554444332 456677777777777778
Q ss_pred CccccCCCCCCEEeCCCCCCc--cCcccccCCcccceeeccccc
Q 046284 328 PQEIACLSSLTTLNLSGNSFE--SLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 328 p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~ 369 (618)
|..+..+++|+.|++++|.+. .+|..+..++.|+.|+++.+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 888888899999999999998 777888889999999887443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=4.6e-24 Score=217.50 Aligned_cols=245 Identities=17% Similarity=0.172 Sum_probs=127.3
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCcee--cccccc-------ccccCcEEeccCCCCCcccCC-C--CCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQ--LWEGEK-------NFKYLSALSFEGCKSLRSFPS-N--LHFV 135 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~lp~-~--~~l~ 135 (618)
+|++|++++|.+ .+|..+. ..|++|++++|.++. ++..+. .+++|++|+|++|.....+|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 566666666666 5555431 116666666666644 333332 455666666666653333332 1 3333
Q ss_pred CCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccCccccCC-----CCCcEEecccCcCccchhhhccCCCCCcEEec
Q 046284 136 CPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECL-----TDLKKLNLKYCKRLKRISTRFCKLRSLVDLFL 210 (618)
Q Consensus 136 ~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l-----~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 210 (618)
+|++|++++ |.++.+|..++.+ ++|++|++++|.+.+..+..++++++|++|++
T Consensus 122 ~L~~L~Ls~---------------------N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 122 DLNILNLRN---------------------VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CCSEEEEES---------------------CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred CccEEEccC---------------------CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 333333333 3334444444433 55555555555555544455555555555555
Q ss_pred CCccCccc--cchhh--hCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccc
Q 046284 211 NGCVNLER--FPEIL--EKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAI 286 (618)
Q Consensus 211 ~~~~~~~~--~~~~~--~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 286 (618)
++|.+.+. .+..+ +.+++|++|++++|.++.++.. ....+..+++|+.|++++|.+
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV--------------------CSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH--------------------HHHHHHTTCCCSEEECTTSCC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH--------------------HHHHHhcCCCCCEEECCCCcC
Confidence 55554432 12222 4455555555555555422210 001122344444444444444
Q ss_pred ccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeecc
Q 046284 287 SQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLE 366 (618)
Q Consensus 287 ~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 366 (618)
+..++.. .+..+++|++|++++|.+..+|..+. ++|+.|++++|+++.+|. +..+++|++|+++
T Consensus 241 ~~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 241 RDAAGAP-------------SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CSSCCCS-------------CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECT
T ss_pred Ccccchh-------------hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEecc
Confidence 4332100 01134566666666666666666655 677888888888877765 7778888888888
Q ss_pred ccccC
Q 046284 367 GCKML 371 (618)
Q Consensus 367 ~~~~l 371 (618)
+|+..
T Consensus 305 ~N~l~ 309 (312)
T 1wwl_A 305 GNPFL 309 (312)
T ss_dssp TCTTT
T ss_pred CCCCC
Confidence 87643
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.2e-21 Score=196.00 Aligned_cols=213 Identities=20% Similarity=0.231 Sum_probs=175.8
Q ss_pred CCcCCCCC-CCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhC
Q 046284 148 LIEFPLIS-GKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEK 225 (618)
Q Consensus 148 l~~~~~~~-~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 225 (618)
+..+|..+ .+++.|++++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.+
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 44555533 468888888888888876 7889999999999999887777778899999999999999988888888999
Q ss_pred CCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCcc-ccCcccCCCccceEEEecCcccccCCcchhhccCCCceE
Q 046284 226 MEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLD-KLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 226 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
+++|++|++++|.++.++. .++.+++|++|++++|.+.+ .+|..+..+++|+.|++++|.++.++...+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 176 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-- 176 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT--
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc--
Confidence 9999999999999998765 68899999999999998776 4688899999999999999999988776554444333
Q ss_pred ecCCCCCCCCCC-eEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCccc-ccCCcccceeeccccccC
Q 046284 304 YFSRCKGLAYLG-HLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPAS-IKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 304 ~l~~~~~l~~L~-~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~l 371 (618)
.|. .|++++|.+..++.......+|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 177 ---------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 ---------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ---------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ---------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 233 78888888888777766667899999999999988754 578888899998888754
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8e-22 Score=192.78 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=156.6
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCc-CccchhhhccCCCCCcEEecCC-ccCccccchhh
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCK-RLKRISTRFCKLRSLVDLFLNG-CVNLERFPEIL 223 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~-~~~~l~~~~~~l~~L~~L~L~~-~~~~~~~~~~~ 223 (618)
.+..+|....+++.|++++|+++.++. .+..+++|++|++++|+ +....+..|.++++|++|++++ |.+....+..+
T Consensus 22 ~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 22 DIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 366666644578888888888888876 67889999999999997 5444455788899999999998 67766666788
Q ss_pred hCCCCCCEEEecCcCCccCCccCCCCCCCC---EEEeccC-CCccccCcccCCCccce-EEEecCcccccCCcchhhccC
Q 046284 224 EKMEHLERINLNKTAITELPSSFENLPGLE---ELFVEDC-SKLDKLPDNIGNLKCLF-IISAVGSAISQLPSSSVAYSN 298 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~---~L~L~~~-~~~~~lp~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~ 298 (618)
.++++|++|++++|.++.+|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.++.++...+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~---- 176 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF---- 176 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT----
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc----
Confidence 899999999999999999887 88888888 9999998 55554455688888888 88888888887777655
Q ss_pred CCceEecCCCCCCCCCCeEeccCCC-CCcCC-ccccCC-CCCCEEeCCCCCCccCcccccCCcccceeeccccc
Q 046284 299 RLGVLYFSRCKGLAYLGHLDMRNCA-VMEIP-QEIACL-SSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 299 ~L~~L~l~~~~~l~~L~~L~L~~n~-l~~~p-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 369 (618)
..++|++|++++|. +..++ ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 177 -----------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 -----------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -----------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred -----------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 23566777777774 76654 346667 7788888888877777754 56677777777654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.3e-21 Score=194.01 Aligned_cols=196 Identities=20% Similarity=0.198 Sum_probs=151.8
Q ss_pred CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecC
Q 046284 157 KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNK 236 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 236 (618)
+++.+++++++++.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+. +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCC
Confidence 45666666666677776553 6788888888887777777788888888888888776654332 6788888888888
Q ss_pred cCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCe
Q 046284 237 TAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGH 316 (618)
Q Consensus 237 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 316 (618)
|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++...+ ..+++|+.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------~~l~~L~~ 152 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL--------------TPTPKLEK 152 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT--------------TTCTTCCE
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc--------------ccccCCCE
Confidence 8888888888888888888888887777666778888888888888888888777654 25677777
Q ss_pred EeccCCCCCcCCcc-ccCCCCCCEEeCCCCCCccCcccccCCcccceeecccccc
Q 046284 317 LDMRNCAVMEIPQE-IACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 317 L~L~~n~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 370 (618)
|++++|++..+|.. +..+++|+.|++++|+++.+|..+..+++|+.|+|++|+.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 78888888887664 4668888888888888888888777777888888887764
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=9.4e-21 Score=188.78 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=140.5
Q ss_pred CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecC
Q 046284 157 KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNK 236 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 236 (618)
+.+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777777776553 5677777777776665555677777788888877776665556667777888888888
Q ss_pred cCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCC
Q 046284 237 TAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLG 315 (618)
Q Consensus 237 n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~ 315 (618)
|.++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++...+ ..+++|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------~~l~~L~ 160 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--------------DKLTSLK 160 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------------TTCTTCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--------------cCCcccc
Confidence 88777664 45677788888888777766666667777777788877777777766543 2456677
Q ss_pred eEeccCCCCCcCCc-cccCCCCCCEEeCCCCCCccCcc-cccCCcccceeecccccc
Q 046284 316 HLDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSFESLPA-SIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 316 ~L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~ 370 (618)
+|++++|.+..++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++|+.
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 77777777777654 36667778888888887777764 356677777777777753
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=5.5e-21 Score=191.07 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=133.2
Q ss_pred EEEeCCCCCCccCCCCCCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCC
Q 046284 71 YLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLI 149 (618)
Q Consensus 71 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~ 149 (618)
..+..+..+..+|..+. ++|++|++++|+++.++. .+..+++|++|++++|. +..++.
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------------- 69 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED------------------- 69 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECT-------------------
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCH-------------------
Confidence 45566677778887653 578888888888888764 67777788888887775 333331
Q ss_pred cCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCC
Q 046284 150 EFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHL 229 (618)
Q Consensus 150 ~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 229 (618)
..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..++.+++|
T Consensus 70 -----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 70 -----------------------GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp -----------------------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred -----------------------HHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 122333344444444444333333334444444444444444444333344555555
Q ss_pred CEEEecCcCCcc--CCccCCCCCCCCEEEeccCCCccccCcccCCCccce----EEEecCcccccCCcchhhccCCCceE
Q 046284 230 ERINLNKTAITE--LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLF----IISAVGSAISQLPSSSVAYSNRLGVL 303 (618)
Q Consensus 230 ~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L 303 (618)
++|++++|.++. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.++.++...+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--------- 197 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--------- 197 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc---------
Confidence 555555555553 455555555666666666555544444454444444 67777777777666554
Q ss_pred ecCCCCCCCCCCeEeccCCCCCcCCcc-ccCCCCCCEEeCCCCCCc
Q 046284 304 YFSRCKGLAYLGHLDMRNCAVMEIPQE-IACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 304 ~l~~~~~l~~L~~L~L~~n~l~~~p~~-l~~l~~L~~L~Ls~n~l~ 348 (618)
...+|++|++++|.+..+|.. +..+++|+.|++++|.++
T Consensus 198 ------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 198 ------KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ------CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ------CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 344678888888888887654 577899999999999876
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.1e-21 Score=210.00 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=147.9
Q ss_pred CCccEEEccCCCCcccC-ccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 156 GKVTSLNLSKSAIEEVP-SSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~-~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
.+|+.|+|++|.+..++ ..+..+++|++|+|++|.+.+..| +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 35666666666667664 467888888888888888766555 777888888888888765432 2377888888
Q ss_pred cCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCC
Q 046284 235 NKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYL 314 (618)
Q Consensus 235 ~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L 314 (618)
++|.++.++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.++.+++..+. ..+++|
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------------~~l~~L 171 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------------ASSDTL 171 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------------GGTTTC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------------hhCCcc
Confidence 88888876653 467888888888888777777888888888888888888765443331 134566
Q ss_pred CeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCCcCCC---CCCCccEEeccCCCC
Q 046284 315 GHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQSLPE---LPLCLESLDLTGCNM 391 (618)
Q Consensus 315 ~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---l~~~L~~L~l~~c~~ 391 (618)
+.|++++|.+..++. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|... .+|. ..++|+.|++++|+.
T Consensus 172 ~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred cEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 666666666666543 23467777777777777776666777777777777776643 3443 235677777777765
Q ss_pred C
Q 046284 392 L 392 (618)
Q Consensus 392 l 392 (618)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 5
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3e-23 Score=230.66 Aligned_cols=386 Identities=14% Similarity=0.116 Sum_probs=233.7
Q ss_pred chhhccCccceEEEEeCCCCCCCCccc--cccccceEEcCCCCcCCCcCceEEEeCCCCCCcc-CCCC--CCCCceEEEc
Q 046284 22 PGAFTNMSNMRLLKFYGIEKLPSMSIE--EHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL-PSNF--KPKNLVALNL 96 (618)
Q Consensus 22 ~~~f~~l~~Lr~L~l~~n~~l~~~~~~--~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~--~l~~L~~L~L 96 (618)
...+.++++|+.|+++++..+.+.... .........++...... ++|++|+++++.+... +..+ .+++|++|++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 456788999999999997532110000 00000000000001223 4899999999876532 2222 5789999999
Q ss_pred cCC-Ccee--ccccccccccCcEEeccCCCCCcc-----cCCC-CCCCCCcEEeccCCC-CC-----CcCCCCCCCccEE
Q 046284 97 SCS-KVEQ--LWEGEKNFKYLSALSFEGCKSLRS-----FPSN-LHFVCPVTINFSYCV-NL-----IEFPLISGKVTSL 161 (618)
Q Consensus 97 ~~n-~i~~--l~~~~~~l~~L~~L~Ls~~~~l~~-----lp~~-~~l~~L~~L~l~~~~-~l-----~~~~~~~~~L~~L 161 (618)
++| .++. ++.....+++|++|+|++|. ++. ++.+ ..+++|++|++++|. .+ ..+.....+|+.|
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 988 5554 44555688999999999987 332 2222 367789999998885 11 1111224688888
Q ss_pred EccCC-CCcccCccccCCCCCcEEecccCcC------ccchhhhccCCCCCcEE-ecCCccCccccchhhhCCCCCCEEE
Q 046284 162 NLSKS-AIEEVPSSIECLTDLKKLNLKYCKR------LKRISTRFCKLRSLVDL-FLNGCVNLERFPEILEKMEHLERIN 233 (618)
Q Consensus 162 ~L~~n-~i~~l~~~i~~l~~L~~L~L~~~~~------~~~l~~~~~~l~~L~~L-~L~~~~~~~~~~~~~~~l~~L~~L~ 233 (618)
+++++ .+..++..+..+++|+.|+++.|.. ...++..+.++++|+.| .+.+. ....++..+..+++|++|+
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEE
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEE
Confidence 88887 5566777777888888888766542 22344457778888887 34332 2244566666778888888
Q ss_pred ecCcCCcc--CCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecC---------cccccCCc-chhhccCCCc
Q 046284 234 LNKTAITE--LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVG---------SAISQLPS-SSVAYSNRLG 301 (618)
Q Consensus 234 L~~n~i~~--lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~---------n~l~~~~~-~~~~~~~~L~ 301 (618)
+++|.++. ++..+..+++|++|++++|.....++.....+++|+.|++.+ +.++.... .+...+++|+
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 88888662 333456788888888888722122333334577888888843 23332111 1122467788
Q ss_pred eEecCCCC-----------CCCCCCeEecc--C----CCCCcCC------ccccCCCCCCEEeCCCCCCcc-CcccccC-
Q 046284 302 VLYFSRCK-----------GLAYLGHLDMR--N----CAVMEIP------QEIACLSSLTTLNLSGNSFES-LPASIKQ- 356 (618)
Q Consensus 302 ~L~l~~~~-----------~l~~L~~L~L~--~----n~l~~~p------~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~- 356 (618)
.|.+..+. .+++|+.|+++ + +.++..| ..+..+++|+.|++++ .++. .+..+..
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 87665433 46788888888 3 4455332 2255678888888877 5552 2233433
Q ss_pred CcccceeeccccccCCcCC----CCCCCccEEeccCCCCCCc----CCCCccccccccccccc
Q 046284 357 LSQLRSLHLEGCKMLQSLP----ELPLCLESLDLTGCNMLRS----LPELPLCLHSLNATNCN 411 (618)
Q Consensus 357 l~~L~~L~L~~~~~l~~lp----~l~~~L~~L~l~~c~~l~~----l~~~~~~L~~L~i~~c~ 411 (618)
+++|+.|+|++|......+ ...++|+.|++++|+.... +...+++|+.|++.+|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 7888888888887532211 1246788888888876221 12234566666666664
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2e-22 Score=224.01 Aligned_cols=301 Identities=15% Similarity=0.083 Sum_probs=219.8
Q ss_pred cCceEEEeCCCCCCcc-----CCCC-CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCc----ccCCCCCCCC
Q 046284 67 KKLRYLHWDTYPLRTL-----PSNF-KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLR----SFPSNLHFVC 136 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~l-----p~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~----~lp~~~~l~~ 136 (618)
++|++|++++|.+..+ +..+ .+++|++|++++|.+..++..+..+++|+.|+++++.... ....+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 4899999999998733 3333 6899999999999999999889999999999998643221 1235677889
Q ss_pred CcEEeccCCCCCCcCC---CCCCCccEEEccCCCCcc--cCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecC
Q 046284 137 PVTINFSYCVNLIEFP---LISGKVTSLNLSKSAIEE--VPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLN 211 (618)
Q Consensus 137 L~~L~l~~~~~l~~~~---~~~~~L~~L~L~~n~i~~--l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 211 (618)
|+.|+++++. ...++ ....+|++|++++|.+.. ++..+..+++|+.|+++++-....++..+..+++|++|+++
T Consensus 272 L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 9999998852 23333 345589999999998753 23446889999999999554334455545678999999999
Q ss_pred C----------ccCcc--ccchhhhCCCCCCEEEecCcCCcc-CCccCC-CCCCCCEEEecc---CCCccc------cCc
Q 046284 212 G----------CVNLE--RFPEILEKMEHLERINLNKTAITE-LPSSFE-NLPGLEELFVED---CSKLDK------LPD 268 (618)
Q Consensus 212 ~----------~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~-lp~~l~-~l~~L~~L~L~~---~~~~~~------lp~ 268 (618)
+ |...+ .++.....+++|++|+++.+.++. .+..+. .+++|+.|++++ |...+. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 4 54443 234445678999999998888873 233344 388999999984 333433 233
Q ss_pred ccCCCccceEEEecCcc--ccc-CCcchhhccCCCceEecCCCC-----------CCCCCCeEeccCCCCCc--CCcccc
Q 046284 269 NIGNLKCLFIISAVGSA--ISQ-LPSSSVAYSNRLGVLYFSRCK-----------GLAYLGHLDMRNCAVME--IPQEIA 332 (618)
Q Consensus 269 ~l~~l~~L~~L~l~~n~--l~~-~~~~~~~~~~~L~~L~l~~~~-----------~l~~L~~L~L~~n~l~~--~p~~l~ 332 (618)
.+..+++|+.|+++.|. ++. ....+...+++|+.|++++|. ++++|++|++++|.++. ++....
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 36678999999997643 442 222333457899999999875 68999999999999865 455566
Q ss_pred CCCCCCEEeCCCCCCccC--cccccCCcccceeecccc
Q 046284 333 CLSSLTTLNLSGNSFESL--PASIKQLSQLRSLHLEGC 368 (618)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~~ 368 (618)
.+++|+.|+|++|+++.. ..-...++.|+...+..+
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 789999999999998743 223356777777766654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-19 Score=180.85 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=110.2
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSY 144 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~ 144 (618)
..+.++++++.++.+|..+. ++|++|++++|+++.++ ..+..+++|++|++++|. ++.+|. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence 56778888888888887553 57888888888888776 367777777877777775 444442 23444444444444
Q ss_pred CCCCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhh
Q 046284 145 CVNLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEIL 223 (618)
Q Consensus 145 ~~~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 223 (618)
| .+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+
T Consensus 95 n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 95 N---------------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp S---------------------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred C---------------------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 3 2333332 23455555555555555544444445555555555555555444444445
Q ss_pred hCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccc
Q 046284 224 EKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAI 286 (618)
Q Consensus 224 ~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 286 (618)
..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 555555555555555555443 244555555555555544433333344445555555554443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=8.6e-20 Score=183.61 Aligned_cols=195 Identities=19% Similarity=0.267 Sum_probs=121.0
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 146 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~ 146 (618)
+++.++++++.++.+|..+. +++++|++++|.++.++ ..+..+++|++|+|++|. ++.++....+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~-- 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSH-- 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCS--
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCC--
Confidence 77888888888888887653 67888888888888764 667888888888888876 55555444444444444444
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKM 226 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 226 (618)
|.++.+|..+..+++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..+..+
T Consensus 87 -------------------N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 87 -------------------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp -------------------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred -------------------CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence 4445566666666666666666666555555556666666666666666555555555666
Q ss_pred CCCCEEEecCcCCccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccc
Q 046284 227 EHLERINLNKTAITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAI 286 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 286 (618)
++|+.|++++|+++.+|.. +..+++|++|++++|.+. .+|..+..+.+|+.+++++|.+
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 6666666666666655543 344555555555555433 3444444444444444444443
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.1e-22 Score=226.07 Aligned_cols=351 Identities=12% Similarity=0.102 Sum_probs=215.9
Q ss_pred hhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCc-CCCcCceEEEeCCC-CCCc--cCCCC-CCCCceEEEccC
Q 046284 24 AFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLD-YLPKKLRYLHWDTY-PLRT--LPSNF-KPKNLVALNLSC 98 (618)
Q Consensus 24 ~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~ 98 (618)
.+..+++|+.|++++|.+. ...+..+. .+ ++|++|++++| .+.. ++..+ .+++|++|++++
T Consensus 100 l~~~~~~L~~L~L~~~~~~-------------~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVT-------------DDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp HHHHCTTCCEEEEESCBCC-------------HHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHhCCCCCeEEeeCcEEc-------------HHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence 3567899999999997531 01111121 24 38999999988 4443 44444 688999999999
Q ss_pred CCcee-----ccccccccccCcEEeccCCC-CCc--ccCC-CCCCCCCcEEeccCCCCCCcCCC---CCCCccEEEccCC
Q 046284 99 SKVEQ-----LWEGEKNFKYLSALSFEGCK-SLR--SFPS-NLHFVCPVTINFSYCVNLIEFPL---ISGKVTSLNLSKS 166 (618)
Q Consensus 99 n~i~~-----l~~~~~~l~~L~~L~Ls~~~-~l~--~lp~-~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~~L~L~~n 166 (618)
|.++. ++.....+++|++|++++|. .+. .++. ...+++|++|++++|..+..++. ...+|+.|++.++
T Consensus 166 ~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 98765 33334577899999999886 111 1111 23468999999999855544332 2457888885443
Q ss_pred -------CCcccCccccCCCCCcEE-ecccCcCccchhhhccCCCCCcEEecCCccCccc-cchhhhCCCCCCEEEecCc
Q 046284 167 -------AIEEVPSSIECLTDLKKL-NLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLER-FPEILEKMEHLERINLNKT 237 (618)
Q Consensus 167 -------~i~~l~~~i~~l~~L~~L-~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n 237 (618)
.+..++..+.++++|+.| .+.+.. ...++..+..+++|++|++++|.+... +...+..+++|++|+++++
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 344555566777777777 343322 233444444567777777777774432 2333556777777777776
Q ss_pred CCc--cCCccCCCCCCCCEEEeccC--------CCc-cccCccc-CCCccceEEEecCcccccCCcchh-hccCCCceEe
Q 046284 238 AIT--ELPSSFENLPGLEELFVEDC--------SKL-DKLPDNI-GNLKCLFIISAVGSAISQLPSSSV-AYSNRLGVLY 304 (618)
Q Consensus 238 ~i~--~lp~~l~~l~~L~~L~L~~~--------~~~-~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~ 304 (618)
+. .++.....+++|++|++++| ... +.....+ ..+++|+.|.+..+.++....... ..+++|+.|+
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 33 12222334677777777442 111 1111111 236677777766666654322222 2467777777
Q ss_pred cC-----CCC----------------CCCCCCeEeccCCCCCc-CCccccC-CCCCCEEeCCCCCCcc--CcccccCCcc
Q 046284 305 FS-----RCK----------------GLAYLGHLDMRNCAVME-IPQEIAC-LSSLTTLNLSGNSFES--LPASIKQLSQ 359 (618)
Q Consensus 305 l~-----~~~----------------~l~~L~~L~L~~n~l~~-~p~~l~~-l~~L~~L~Ls~n~l~~--lp~~l~~l~~ 359 (618)
++ +|. .+++|++|++++ .+.. .+..+.. +++|+.|+|++|.++. ++.....+++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 76 222 356788999977 4444 3333443 7899999999998863 2222367899
Q ss_pred cceeeccccccCCc----CCCCCCCccEEeccCCCC
Q 046284 360 LRSLHLEGCKMLQS----LPELPLCLESLDLTGCNM 391 (618)
Q Consensus 360 L~~L~L~~~~~l~~----lp~l~~~L~~L~l~~c~~ 391 (618)
|++|+|++|+.... +..-.++|+.|++++|+.
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999986321 112246899999999976
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.4e-20 Score=182.19 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=164.9
Q ss_pred CCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc-CccccchhhhCCCCCCEEEecC-cCCccCCc
Q 046284 167 AIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV-NLERFPEILEKMEHLERINLNK-TAITELPS 244 (618)
Q Consensus 167 ~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-n~i~~lp~ 244 (618)
.++++|. +. ++|++|++++|.+.+..+..+.++++|++|++++|. +....+..+.++++|++|++++ |.++.++.
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3778887 43 589999999999877777688899999999999997 5555566889999999999998 99998864
Q ss_pred -cCCCCCCCCEEEeccCCCccccCcccCCCccce---EEEecCc-ccccCCcchhhccCCCceEecCCCCCCCCCC-eEe
Q 046284 245 -SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLF---IISAVGS-AISQLPSSSVAYSNRLGVLYFSRCKGLAYLG-HLD 318 (618)
Q Consensus 245 -~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~-~L~ 318 (618)
.+.++++|++|++++|.+.+ +|. +..+++|+ .|++++| .++.++...+ .++++|+ +|+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--------------~~l~~L~~~L~ 162 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--------------QGLCNETLTLK 162 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--------------TTTBSSEEEEE
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--------------cchhcceeEEE
Confidence 67889999999999997665 666 78888887 9999999 8888877654 2567778 888
Q ss_pred ccCCCCCcCCccccCCCCCCEEeCCCCC-CccCc-ccccCC-cccceeeccccccCCcCC-CCCCCccEEeccCCCC
Q 046284 319 MRNCAVMEIPQEIACLSSLTTLNLSGNS-FESLP-ASIKQL-SQLRSLHLEGCKMLQSLP-ELPLCLESLDLTGCNM 391 (618)
Q Consensus 319 L~~n~l~~~p~~l~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~L~~~~~l~~lp-~l~~~L~~L~l~~c~~ 391 (618)
+++|.+..+|......++|+.|++++|. ++.+| ..+..+ ++|+.|++++|+.. .+| ..+++|+.|+++++..
T Consensus 163 l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC--
T ss_pred cCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccC
Confidence 8888888887765555889999999994 88886 557888 99999999998754 455 3567888998888754
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.1e-20 Score=188.36 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=61.6
Q ss_pred ccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccce
Q 046284 199 FCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLF 277 (618)
Q Consensus 199 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 277 (618)
+.++++|++|++++|.+.+..+..++.+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..++.+++|+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 33344444444444443333333344444444444444444433322 34444444444444444333333344444555
Q ss_pred EEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc-cCcccccC
Q 046284 278 IISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE-SLPASIKQ 356 (618)
Q Consensus 278 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~ 356 (618)
.|++++|.++.++...+. .+++|+.|++++|.+. +.+++|+.|+++.|.++ .+|.+++.
T Consensus 185 ~L~L~~N~l~~~~~~~~~--------------~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFD--------------RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp EEECCSSCCSCCCTTTTT--------------TCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred EEECCCCcCCccCHHHHh--------------CCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 555555544444443321 2333344444444322 22445666666666655 55655554
Q ss_pred Cc
Q 046284 357 LS 358 (618)
Q Consensus 357 l~ 358 (618)
++
T Consensus 245 ~~ 246 (272)
T 3rfs_A 245 VA 246 (272)
T ss_dssp BC
T ss_pred cC
Confidence 43
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9e-20 Score=185.22 Aligned_cols=188 Identities=19% Similarity=0.301 Sum_probs=135.6
Q ss_pred CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecC
Q 046284 157 KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNK 236 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 236 (618)
+|+.|+++++.++.++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. + .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCC
Confidence 4455555555556665 46777888888888876554433 77788888888888775542 3 577788888888888
Q ss_pred cCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCe
Q 046284 237 TAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGH 316 (618)
Q Consensus 237 n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 316 (618)
|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. .. .+++|+.
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~---------------~l~~L~~ 177 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LA---------------NLSKLTT 177 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GT---------------TCTTCCE
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hc---------------CCCCCCE
Confidence 88887765 7778888888888876554333 6777788888888887776654 21 5677777
Q ss_pred EeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeecccccc
Q 046284 317 LDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 317 L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 370 (618)
|++++|.+..++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+.
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 7888888877665 677888888888888888777 377788888888888764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=9.5e-20 Score=181.66 Aligned_cols=199 Identities=20% Similarity=0.204 Sum_probs=104.9
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA 238 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 238 (618)
+.|+++++.+..++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+..++.+++|++|++++|.
T Consensus 44 ~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 44 DQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 33333333334443 35566666666666666444 22 35566666666666666555555555666666666666666
Q ss_pred CccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeE
Q 046284 239 ITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHL 317 (618)
Q Consensus 239 i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L 317 (618)
++.++.. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++...
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------ 176 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV------------------------ 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH------------------------
Confidence 6655433 455555666666555444443444445555555555555444443332
Q ss_pred eccCCCCCcCCccccCCCCCCEEeCCCCCCccCcc-cccCCcccceeeccccccCCcCCCCCCCccEEeccCCCCCCcCC
Q 046284 318 DMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPA-SIKQLSQLRSLHLEGCKMLQSLPELPLCLESLDLTGCNMLRSLP 396 (618)
Q Consensus 318 ~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~l~~c~~l~~l~ 396 (618)
++.+++|+.|++++|+++.++. .+..+++|+.|++++|+..... ++|+.|+++.|...+.+|
T Consensus 177 -------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 177 -------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp -------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBB
T ss_pred -------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCccc
Confidence 3445555555555555554442 2455555666666555543322 245555555555555555
Q ss_pred CCccc
Q 046284 397 ELPLC 401 (618)
Q Consensus 397 ~~~~~ 401 (618)
..+..
T Consensus 240 ~~~~~ 244 (272)
T 3rfs_A 240 NSAGS 244 (272)
T ss_dssp CTTSC
T ss_pred Ccccc
Confidence 44433
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.7e-20 Score=185.35 Aligned_cols=193 Identities=20% Similarity=0.289 Sum_probs=117.8
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~ 147 (618)
+|++|+++++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~- 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ- 118 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-
Confidence 677777777777776643367777777777777777665 6777777777777776 5555555555555555555542
Q ss_pred CCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC
Q 046284 148 LIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME 227 (618)
Q Consensus 148 l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 227 (618)
++.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..++
T Consensus 119 --------------------l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~ 173 (308)
T 1h6u_A 119 --------------------ITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS 173 (308)
T ss_dssp --------------------CCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred --------------------CCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC
Confidence 233332 5566666666666665544322 5556666666666665544322 56666
Q ss_pred CCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc
Q 046284 228 HLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 228 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
+|++|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++..|.
T Consensus 174 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 66666666666666554 5566666666666665544332 5566666666666666655443
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2e-19 Score=186.22 Aligned_cols=202 Identities=18% Similarity=0.211 Sum_probs=147.6
Q ss_pred eEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCC
Q 046284 70 RYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCV 146 (618)
Q Consensus 70 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~ 146 (618)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|. .+.++++|++|+|++|+.++.+|. +.++++++++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~-- 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK-- 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE--
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc--
Confidence 56778888899999876 4689999999999999985 578999999999999986666663 45566655544333
Q ss_pred CCCcCCCCCCCccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccc-hhhh
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFP-EILE 224 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~ 224 (618)
+|++..+ |..+..+++|++|++++|++....+..+....++..|++.++.....++ ..+.
T Consensus 89 ------------------~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 89 ------------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp ------------------ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST
T ss_pred ------------------CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh
Confidence 3444666 3467888889999999888766666556667778888887755554443 3455
Q ss_pred CCC-CCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCc-ccCCCccceEEEecCcccccCCcc
Q 046284 225 KME-HLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPD-NIGNLKCLFIISAVGSAISQLPSS 292 (618)
Q Consensus 225 ~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 292 (618)
.+. .++.|++++|+++++|.......+|++|++.+|..++.+|. .|..+++|++|++++|+++.+|..
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 554 58888888888888887776777888888887666666664 456777777777777777666654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=186.25 Aligned_cols=228 Identities=14% Similarity=0.131 Sum_probs=112.7
Q ss_pred CCCceEEEccCCCcee--cc--ccccccccCcEEeccCCCCCcccCCC---CCCCCCcEEeccCCCCCCcCCCCCCCccE
Q 046284 88 PKNLVALNLSCSKVEQ--LW--EGEKNFKYLSALSFEGCKSLRSFPSN---LHFVCPVTINFSYCVNLIEFPLISGKVTS 160 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~--l~--~~~~~l~~L~~L~Ls~~~~l~~lp~~---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 160 (618)
...++.|.+.++.+.. +. .....+++|++|++++|......|.. ..+++|++|++++|......+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-------- 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS-------- 134 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS--------
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh--------
Confidence 3446666666665543 11 11223455666666666543333321 444555555555543221110
Q ss_pred EEccCCCCcccC-ccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccc--c--chhhhCCCCCCEEEec
Q 046284 161 LNLSKSAIEEVP-SSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLER--F--PEILEKMEHLERINLN 235 (618)
Q Consensus 161 L~L~~n~i~~l~-~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~--~--~~~~~~l~~L~~L~L~ 235 (618)
.++ ..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. + +..++.+++|++|+++
T Consensus 135 ---------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 135 ---------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp ---------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ---------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 000 1223455555555555555444445555555555555555554321 1 1112345555555555
Q ss_pred CcCCccCCcc----CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCC
Q 046284 236 KTAITELPSS----FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGL 311 (618)
Q Consensus 236 ~n~i~~lp~~----l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l 311 (618)
+|.++.++.. +..+++|++|++++|.+.+..|..+..+ ..+
T Consensus 206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-----------------------------------~~~ 250 (310)
T 4glp_A 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-----------------------------------MWS 250 (310)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-----------------------------------CCC
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-----------------------------------cCc
Confidence 5555443321 2344455555555554444434333322 123
Q ss_pred CCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeecccccc
Q 046284 312 AYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 312 ~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 370 (618)
++|++|++++|.+..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|+.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 455555555555555555443 567777777777766653 56667777777777764
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.9e-20 Score=185.54 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=159.4
Q ss_pred CCCCcEEecccCcCccchhhhc--cCCCCCcEEecCCccCccccc----hhhhCCCCCCEEEecCcCCccCC-ccCCCCC
Q 046284 178 LTDLKKLNLKYCKRLKRISTRF--CKLRSLVDLFLNGCVNLERFP----EILEKMEHLERINLNKTAITELP-SSFENLP 250 (618)
Q Consensus 178 l~~L~~L~L~~~~~~~~l~~~~--~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~ 250 (618)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999999888888877 889999999999998877554 34557889999999999998765 5788999
Q ss_pred CCCEEEeccCCCccc--c--CcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc
Q 046284 251 GLEELFVEDCSKLDK--L--PDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME 326 (618)
Q Consensus 251 ~L~~L~L~~~~~~~~--l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~ 326 (618)
+|++|++++|.+.+. + +..++.+++|++|++++|.++.++...... ...+++|++|++++|.+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-----------~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL-----------AAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH-----------HHHTCCCSSEECTTSCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH-----------HhcCCCCCEEECCCCCCCc
Confidence 999999999987642 2 233478899999999999987665431100 0146788888999999988
Q ss_pred C-CccccCC---CCCCEEeCCCCCCccCcccccCCcccceeeccccccCC-cCCCCCCCccEEeccCCCCC
Q 046284 327 I-PQEIACL---SSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQ-SLPELPLCLESLDLTGCNML 392 (618)
Q Consensus 327 ~-p~~l~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~l~~~L~~L~l~~c~~l 392 (618)
. |..+..+ ++|++|++++|+++.+|..+. ++|++|++++|+..+ ..+...++|+.|++++|+..
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 5 7777666 699999999999999997774 899999999998654 23345578999999998653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=4.7e-21 Score=197.19 Aligned_cols=228 Identities=17% Similarity=0.193 Sum_probs=151.1
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCcCccc-hhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKR-ISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
.+++.|++++|.+...+..+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456666777776666666667788888888888876554 6667777888888888888777677777777888888888
Q ss_pred cCc-CCc--cCCccCCCCCCCCEEEeccC-CCccc-cCcccCCCc-cceEEEecCcc--cc--cCCcchhhccCCCceEe
Q 046284 235 NKT-AIT--ELPSSFENLPGLEELFVEDC-SKLDK-LPDNIGNLK-CLFIISAVGSA--IS--QLPSSSVAYSNRLGVLY 304 (618)
Q Consensus 235 ~~n-~i~--~lp~~l~~l~~L~~L~L~~~-~~~~~-lp~~l~~l~-~L~~L~l~~n~--l~--~~~~~~~~~~~~L~~L~ 304 (618)
++| .++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. ++ .++....
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~---------- 219 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR---------- 219 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----------
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----------
Confidence 887 566 35666677788888888888 54433 566667777 78888887774 32 2332222
Q ss_pred cCCCCCCCCCCeEeccCCC-CCc-CCccccCCCCCCEEeCCCCC-Cc-cCcccccCCcccceeeccccccCC-cCCCCCC
Q 046284 305 FSRCKGLAYLGHLDMRNCA-VME-IPQEIACLSSLTTLNLSGNS-FE-SLPASIKQLSQLRSLHLEGCKMLQ-SLPELPL 379 (618)
Q Consensus 305 l~~~~~l~~L~~L~L~~n~-l~~-~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~~~~l~-~lp~l~~ 379 (618)
.+++|++|++++|. +.. .+..+..+++|+.|++++|. +. .....+..+++|+.|++++| ... .+..+..
T Consensus 220 -----~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~ 293 (336)
T 2ast_B 220 -----RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE 293 (336)
T ss_dssp -----HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH
T ss_pred -----hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh
Confidence 45677777777777 443 55667777888888888884 22 11124667888888888887 111 1112233
Q ss_pred CccEEeccCCCCCCcCCCCc
Q 046284 380 CLESLDLTGCNMLRSLPELP 399 (618)
Q Consensus 380 ~L~~L~l~~c~~l~~l~~~~ 399 (618)
+++.|++++|...+..|...
T Consensus 294 ~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 294 ALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp HSTTSEESCCCSCCTTCSSC
T ss_pred hCcceEEecccCccccCCcc
Confidence 46666776666555555443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=5.4e-21 Score=200.83 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=34.4
Q ss_pred CCCCCeEeccCCCCCc-----CCccc--cCCCCCCEEeCCCCCCcc-----Ccccc-cCCcccceeeccccccC
Q 046284 311 LAYLGHLDMRNCAVME-----IPQEI--ACLSSLTTLNLSGNSFES-----LPASI-KQLSQLRSLHLEGCKML 371 (618)
Q Consensus 311 l~~L~~L~L~~n~l~~-----~p~~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~~~~l 371 (618)
+++|++|+|++|.+.. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|+..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3445555555555543 23444 226666666666666664 56555 44666666666666543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.5e-20 Score=190.68 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=138.8
Q ss_pred ceEEEccCCCceecccccccc--ccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCC
Q 046284 91 LVALNLSCSKVEQLWEGEKNF--KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAI 168 (618)
Q Consensus 91 L~~L~L~~n~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i 168 (618)
++.++++++.+. +..+..+ ++++.|++++|......+.+..+++|++|++++|....
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~------------------- 107 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV------------------- 107 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-------------------
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-------------------
Confidence 455555555544 2333444 55566666655533333344444555555555442110
Q ss_pred cccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc-Ccc-ccchhhhCCCCCCEEEecCc-CCcc--CC
Q 046284 169 EEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV-NLE-RFPEILEKMEHLERINLNKT-AITE--LP 243 (618)
Q Consensus 169 ~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~-~~~-~~~~~~~~l~~L~~L~L~~n-~i~~--lp 243 (618)
..++..+..+++|++|++++|.+....+..++.+++|++|++++|. +.+ .++..+..+++|++|++++| .++. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 1144455566666666666666555556666666666666666663 332 24555666666666666666 6653 45
Q ss_pred ccCCCCC-CCCEEEeccCC--Cc-cccCcccCCCccceEEEecCcc-ccc-CCcchhhccCCCceEecCCCCCCCCCCeE
Q 046284 244 SSFENLP-GLEELFVEDCS--KL-DKLPDNIGNLKCLFIISAVGSA-ISQ-LPSSSVAYSNRLGVLYFSRCKGLAYLGHL 317 (618)
Q Consensus 244 ~~l~~l~-~L~~L~L~~~~--~~-~~lp~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~L~~L~l~~~~~l~~L~~L 317 (618)
..+..++ +|++|++++|. .. +.++..+..+++|+.|++++|. ++. .+..+. .+++|++|
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------------~l~~L~~L 252 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------------QLNYLQHL 252 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------------GCTTCCEE
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------------CCCCCCEe
Confidence 5556666 66666666663 22 3445555666677777777666 432 222221 34566666
Q ss_pred eccCCC-CCc-CCccccCCCCCCEEeCCCCCCccCcccccCC-cccceeeccccccCCcCCCCC
Q 046284 318 DMRNCA-VME-IPQEIACLSSLTTLNLSGNSFESLPASIKQL-SQLRSLHLEGCKMLQSLPELP 378 (618)
Q Consensus 318 ~L~~n~-l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~L~~~~~l~~lp~l~ 378 (618)
++++|. +.. ....+..+++|+.|++++| ++. ..+..+ .+|+.|++++|...+..|...
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 666664 211 1224667889999999988 331 133333 347777788888776666543
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=7.5e-21 Score=199.75 Aligned_cols=269 Identities=16% Similarity=0.100 Sum_probs=178.0
Q ss_pred CceEEEeCCCCCCccCCCC-CCCCceEEEccCCCcee-----ccccccccccCcEEeccCCCC--Cc-ccC--------C
Q 046284 68 KLRYLHWDTYPLRTLPSNF-KPKNLVALNLSCSKVEQ-----LWEGEKNFKYLSALSFEGCKS--LR-SFP--------S 130 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~Ls~~~~--l~-~lp--------~ 130 (618)
.|++..+....+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|.. +. .+| .
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444444454444 46667777777776665 233456677777777777631 11 112 1
Q ss_pred CCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcc-----cCccccCCCCCcEEecccCcCccchhh----hccC
Q 046284 131 NLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEE-----VPSSIECLTDLKKLNLKYCKRLKRIST----RFCK 201 (618)
Q Consensus 131 ~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~-----l~~~i~~l~~L~~L~L~~~~~~~~l~~----~~~~ 201 (618)
+..+++|++|++++ |.+.. ++..+..+++|++|+|++|.+....+. .+..
T Consensus 90 l~~~~~L~~L~Ls~---------------------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 90 LLKCPKLHTVRLSD---------------------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148 (386)
T ss_dssp HTTCTTCCEEECCS---------------------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HhhCCcccEEECCC---------------------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH
Confidence 13444455555544 44443 677788889999999999887543333 3333
Q ss_pred C---------CCCcEEecCCccCc-cccc---hhhhCCCCCCEEEecCcCCc------cCCccCCCCCCCCEEEeccCCC
Q 046284 202 L---------RSLVDLFLNGCVNL-ERFP---EILEKMEHLERINLNKTAIT------ELPSSFENLPGLEELFVEDCSK 262 (618)
Q Consensus 202 l---------~~L~~L~L~~~~~~-~~~~---~~~~~l~~L~~L~L~~n~i~------~lp~~l~~l~~L~~L~L~~~~~ 262 (618)
+ ++|++|++++|.+. ..++ ..+..+++|++|++++|.++ -+|..+..+++|++|++++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 4 89999999998876 3444 46778889999999999888 2344778889999999999987
Q ss_pred c----cccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc-----CCccc-c
Q 046284 263 L----DKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME-----IPQEI-A 332 (618)
Q Consensus 263 ~----~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-----~p~~l-~ 332 (618)
. ..+|..+..+++|+.|++++|.++......+.. .+ . ...+++|++|++++|.+.. +|..+ .
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l---~---~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--AF---S---KLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH--HH---H---TCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH--HH---h---hccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 5 667788888999999999999887542111100 00 0 0137889999999999988 78877 6
Q ss_pred CCCCCCEEeCCCCCCccCc---ccc-cCCcccceeec
Q 046284 333 CLSSLTTLNLSGNSFESLP---ASI-KQLSQLRSLHL 365 (618)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~lp---~~l-~~l~~L~~L~L 365 (618)
++++|+.|++++|.++... ..+ ..+++++.+++
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred cCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 6899999999999998554 222 33455554444
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1e-18 Score=180.87 Aligned_cols=232 Identities=19% Similarity=0.237 Sum_probs=146.1
Q ss_pred cEEeccCCCCCCcCCCCC-CCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhh-hccCCCCCcE-EecCCc
Q 046284 138 VTINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRIST-RFCKLRSLVD-LFLNGC 213 (618)
Q Consensus 138 ~~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~-L~L~~~ 213 (618)
++++.+++ .++.+|..+ .++++|+|++|+|+.+|. .+.++++|++|+|++|++.+.+|. .|.++++|++ +.+.+|
T Consensus 12 ~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34555543 566777544 578888888888888876 567888888888888887776653 4677777765 444455
Q ss_pred cCccccchhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCccccCc-ccCCCc-cceEEEecCcccccCC
Q 046284 214 VNLERFPEILEKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKLDKLPD-NIGNLK-CLFIISAVGSAISQLP 290 (618)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~-~l~~l~-~L~~L~l~~n~l~~~~ 290 (618)
.+....|..+..+++|++|++++|+++.+|. .+....++..|++.++.....++. .+..+. .++.|++++|.++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 5655666777888888888888888877654 344556677777776655555443 344443 4666777777777666
Q ss_pred cchhhccCCCceEecCCCCCCCCCCeEeccC-CCCCcCCc-cccCCCCCCEEeCCCCCCccCcccccCCcccceeecccc
Q 046284 291 SSSVAYSNRLGVLYFSRCKGLAYLGHLDMRN-CAVMEIPQ-EIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGC 368 (618)
Q Consensus 291 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~-n~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 368 (618)
...+ ...+|++|++++ |.+..+|. .+..+++|+.|++++|+|+.+|.. .+.+|+.|.+.++
T Consensus 171 ~~~f---------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 171 NSAF---------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp TTSS---------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred hhhc---------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 6655 334455555543 44555554 345666666666666666666642 2445555555555
Q ss_pred ccCCcCCCC--CCCccEEecc
Q 046284 369 KMLQSLPEL--PLCLESLDLT 387 (618)
Q Consensus 369 ~~l~~lp~l--~~~L~~L~l~ 387 (618)
..++.+|.+ .++|+.+++.
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECS
T ss_pred CCcCcCCCchhCcChhhCcCC
Confidence 555555532 2355555554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.4e-18 Score=169.35 Aligned_cols=133 Identities=18% Similarity=0.249 Sum_probs=88.5
Q ss_pred CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecC
Q 046284 157 KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNK 236 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 236 (618)
..+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34567777777777776654 5778888888777776666677777777777777777776666677777777777777
Q ss_pred cCCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc
Q 046284 237 TAITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 237 n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
|.++.+|. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 77776653 35666666666666665554444445555555555555555554444
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=3.7e-20 Score=192.67 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=15.5
Q ss_pred CceEEEccCCCceecc-----ccccccc-cCcEEeccCC
Q 046284 90 NLVALNLSCSKVEQLW-----EGEKNFK-YLSALSFEGC 122 (618)
Q Consensus 90 ~L~~L~L~~n~i~~l~-----~~~~~l~-~L~~L~Ls~~ 122 (618)
+|++|+|++|.++..+ ..+..++ +|++|+|++|
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC
Confidence 3555555555555433 2333444 4444444444
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=4.9e-18 Score=185.38 Aligned_cols=191 Identities=21% Similarity=0.243 Sum_probs=114.4
Q ss_pred CCcEEeccCCCCCCcCCC-CCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc
Q 046284 136 CPVTINFSYCVNLIEFPL-ISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV 214 (618)
Q Consensus 136 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 214 (618)
+|+.|++++|. +..+|. ...+|+.|++++|.|+.+| ..+++|+.|++++|.+.+ +|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence 67777777764 444554 3456777777777777776 346777777777776554 555 443 67777777766
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchh
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSV 294 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 294 (618)
+.+ +|. .+++|++|++++|.++.+|. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++.+|. +.
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HH
Confidence 555 444 46667777777777776665 45667777777765544 555 44 666666666666666655 21
Q ss_pred hccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCc-cCcccccC
Q 046284 295 AYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFE-SLPASIKQ 356 (618)
Q Consensus 295 ~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~ 356 (618)
. +| ....+.|+.|++++|.+..+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 200 -~--~L-------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 200 -V--RN-------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -H--hh-------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 0 11 01123336666666666666666655666666666666665 34444433
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=4.5e-18 Score=185.70 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=92.4
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~ 147 (618)
+|+.|++++|.++.+|..+ +++|++|+|++|+|+.+| ..+++|++|+|++|. ++.+|.+.. +|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~l~~--~L~~L~Ls~N~- 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPA--SLKHLDVDNNQ- 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCT--TCCEEECCSSC-
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcchhhc--CCCEEECCCCc-
Confidence 4555555555555555433 244555555555555554 234555555555553 333444221 44444444442
Q ss_pred CCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC
Q 046284 148 LIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME 227 (618)
Q Consensus 148 l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 227 (618)
+..+|..+.+|+.|++++|.|+.+|. .+++|+.|++++|.+.+ +|. +. ++|++|++++|.+. .+|. +..
T Consensus 132 l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 132 LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-- 200 (571)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence 22233333344555555555555544 34555555555555433 443 33 55555555555444 3333 222
Q ss_pred CC-------CEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCC
Q 046284 228 HL-------ERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGN 272 (618)
Q Consensus 228 ~L-------~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~ 272 (618)
+| +.|++++|.|+.+|..+..+++|+.|++++|++.+..|..+..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44 6666666666666666666666666666666666655554443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=4.6e-17 Score=160.09 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=115.1
Q ss_pred CCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 156 GKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
.+++.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 367777777777777754 6888999999999999988888888899999999999999988888888999999999999
Q ss_pred cCcCCccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcc
Q 046284 235 NKTAITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSS 292 (618)
Q Consensus 235 ~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 292 (618)
++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99999988765 68899999999999987766666788888888888777777766543
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.9e-18 Score=179.71 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=150.6
Q ss_pred CCCccEEEccCCCCcccC-----ccccCCC-CCcEEecccCcCccchhhhccCC-----CCCcEEecCCccCccccchh-
Q 046284 155 SGKVTSLNLSKSAIEEVP-----SSIECLT-DLKKLNLKYCKRLKRISTRFCKL-----RSLVDLFLNGCVNLERFPEI- 222 (618)
Q Consensus 155 ~~~L~~L~L~~n~i~~l~-----~~i~~l~-~L~~L~L~~~~~~~~l~~~~~~l-----~~L~~L~L~~~~~~~~~~~~- 222 (618)
..+|++|++++|.++..+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+....+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345888888888887665 4566677 78888888887766655555543 78888888888776655553
Q ss_pred ---hhCC-CCCCEEEecCcCCccCCc-----cCCC-CCCCCEEEeccCCCcc----ccCcccCCCc-cceEEEecCcccc
Q 046284 223 ---LEKM-EHLERINLNKTAITELPS-----SFEN-LPGLEELFVEDCSKLD----KLPDNIGNLK-CLFIISAVGSAIS 287 (618)
Q Consensus 223 ---~~~l-~~L~~L~L~~n~i~~lp~-----~l~~-l~~L~~L~L~~~~~~~----~lp~~l~~l~-~L~~L~l~~n~l~ 287 (618)
+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+.+ .++..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3334 778888888888775543 2334 3578888888876664 3333444554 7888888888777
Q ss_pred cCCcchhhccCCCceEecCCCCCC-CCCCeEeccCCCCCc-----CCccccC-CCCCCEEeCCCCCCccCc-----cccc
Q 046284 288 QLPSSSVAYSNRLGVLYFSRCKGL-AYLGHLDMRNCAVME-----IPQEIAC-LSSLTTLNLSGNSFESLP-----ASIK 355 (618)
Q Consensus 288 ~~~~~~~~~~~~L~~L~l~~~~~l-~~L~~L~L~~n~l~~-----~p~~l~~-l~~L~~L~Ls~n~l~~lp-----~~l~ 355 (618)
......+... .... ++|++|++++|.+.. ++..+.. .++|++|+|++|.++..+ ..+.
T Consensus 181 ~~~~~~l~~~----------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 181 SKNCAELAKF----------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp GSCHHHHHHH----------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred hhhHHHHHHH----------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 6554322110 0023 478888888888877 5556655 458999999999887553 3456
Q ss_pred CCcccceeeccccccCC-----------cCCCCCCCccEEeccCCCCC
Q 046284 356 QLSQLRSLHLEGCKMLQ-----------SLPELPLCLESLDLTGCNML 392 (618)
Q Consensus 356 ~l~~L~~L~L~~~~~l~-----------~lp~l~~~L~~L~l~~c~~l 392 (618)
.+++|+.|++++|.... .++ -.++|+.|++++|+.-
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEECTTSCBCC
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEecCCCcCC
Confidence 78889999999887211 122 2346888888888643
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.2e-17 Score=166.15 Aligned_cols=171 Identities=23% Similarity=0.284 Sum_probs=119.1
Q ss_pred cCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEE
Q 046284 176 ECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEEL 255 (618)
Q Consensus 176 ~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 255 (618)
..+++|+.|++++|.+... +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC-hh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3456666666666654332 32 5566677777777666555433 6667777777777777766554 6677777777
Q ss_pred EeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCC
Q 046284 256 FVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLS 335 (618)
Q Consensus 256 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~ 335 (618)
++++|.+.+. ..+..+++|+.|++++|.++.++ .+. .+++|+.|++++|.+..++. +..++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~---------------~l~~L~~L~L~~N~l~~~~~-l~~l~ 178 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT-VLS---------------RLTKLDTLSLEDNQISDIVP-LAGLT 178 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-GGG---------------GCTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch-hhc---------------cCCCCCEEEccCCccccchh-hcCCC
Confidence 7777755442 34667777777777777777652 211 56778888888888888765 78888
Q ss_pred CCCEEeCCCCCCccCcccccCCcccceeeccccccC
Q 046284 336 SLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 336 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
+|+.|++++|.++.+|. +..+++|+.|++++|+..
T Consensus 179 ~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred ccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 99999999998888874 888888888888888754
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.8e-17 Score=164.40 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=90.3
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~ 147 (618)
+|++|++++|.++.++....+++|++|++++|+++.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~- 123 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG- 123 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-
Confidence 566666666666666553356666666666666666654 6666666666666665 4445544455555554444442
Q ss_pred CCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC
Q 046284 148 LIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME 227 (618)
Q Consensus 148 l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 227 (618)
+..+ +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..++
T Consensus 124 --------------------i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 124 --------------------ISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp --------------------CCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred --------------------CCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence 2333 2344555666666666554433 234555555555555555444332 55555
Q ss_pred CCCEEEecCcCCccCCccCCCCCCCCEEEeccCC
Q 046284 228 HLERINLNKTAITELPSSFENLPGLEELFVEDCS 261 (618)
Q Consensus 228 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~ 261 (618)
+|++|++++|.++.++. +..+++|+.|++++|+
T Consensus 179 ~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred ccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 55555555555555543 4555555555555553
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=5e-17 Score=154.97 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=128.9
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA 238 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 238 (618)
+.++.++++++++|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666666677777554 3578888888877766555567778888888888877776666667788888888888888
Q ss_pred CccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeE
Q 046284 239 ITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHL 317 (618)
Q Consensus 239 i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L 317 (618)
++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++...+. .+++|+.|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--------------~l~~L~~L 153 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD--------------RLTSLQYI 153 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--------------TCTTCCEE
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc--------------cCCCccEE
Confidence 8877654 57888888888888877666666678888888888888888877776543 34556666
Q ss_pred eccCCCCCcCCccccCCCCCCEEeCCCCCCc-cCcccccCCcc
Q 046284 318 DMRNCAVMEIPQEIACLSSLTTLNLSGNSFE-SLPASIKQLSQ 359 (618)
Q Consensus 318 ~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 359 (618)
++++|.+. +.+++|+.|+++.|+++ .+|..++.++.
T Consensus 154 ~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 154 WLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 66666433 34567788888888777 67777766554
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=7.3e-17 Score=152.47 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred CCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCC
Q 046284 87 KPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKS 166 (618)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n 166 (618)
.+++|++|++++|.++.++ ++..+++|++|++++|. +..++.+..+++|++|++++|...
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~------------------ 101 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVT------------------ 101 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCB------------------
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccC------------------
Confidence 3455666666666666655 56666666666666663 444445555555555555554321
Q ss_pred CCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccC
Q 046284 167 AIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSF 246 (618)
Q Consensus 167 ~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l 246 (618)
...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.++.++ .+
T Consensus 102 --~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l 177 (197)
T 4ezg_A 102 --SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GI 177 (197)
T ss_dssp --GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TG
T ss_pred --cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hh
Confidence 2245556667777777777777666666667777777777777776444444 4666777777777777776665 45
Q ss_pred CCCCCCCEEEeccCC
Q 046284 247 ENLPGLEELFVEDCS 261 (618)
Q Consensus 247 ~~l~~L~~L~L~~~~ 261 (618)
..+++|++|++++|+
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 666666666666664
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=176.70 Aligned_cols=185 Identities=23% Similarity=0.310 Sum_probs=132.7
Q ss_pred EccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCcc
Q 046284 162 NLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITE 241 (618)
Q Consensus 162 ~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 241 (618)
.+..+.+..+.. +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.++.
T Consensus 27 ~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAVT-QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hccCCCcccccc-hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 334444443322 4556777777777776433 33 36677777777777777665444 7777888888888888877
Q ss_pred CCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccC
Q 046284 242 LPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRN 321 (618)
Q Consensus 242 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~ 321 (618)
+| .+..+++|+.|+|++|.+.+ + ..+..+++|+.|++++|.++.++ .+. .+++|+.|+|++
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~---------------~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDIT-VLS---------------RLTKLDTLSLED 162 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG-GGG---------------SCTTCSEEECCS
T ss_pred Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCch-hhc---------------ccCCCCEEECcC
Confidence 66 57778888888888886654 2 34777888888888888777662 221 567888888888
Q ss_pred CCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccCC
Q 046284 322 CAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKMLQ 372 (618)
Q Consensus 322 n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~ 372 (618)
|.+..++. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|+...
T Consensus 163 N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 88888665 788888999999998888876 57888888888888887644
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.9e-16 Score=173.29 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=104.4
Q ss_pred cCceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCC
Q 046284 67 KKLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 146 (618)
Q Consensus 67 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~ 146 (618)
.+|+.|++++|.+..+|....+++|+.|+|++|.++.++. +..+++|+.|+|++|. +..+|.+..+++|+.|++++|.
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC
Confidence 3777778887777777754477788888888888877765 7777888888888875 5566666666666666666653
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKM 226 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 226 (618)
. ..+ +.+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+..| +..+
T Consensus 121 l---------------------~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 174 (605)
T 1m9s_A 121 I---------------------SDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 174 (605)
T ss_dssp C---------------------CCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred C---------------------CCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccC
Confidence 2 332 2345556666666666554443 335555666666666655544433 5555
Q ss_pred CCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCc
Q 046284 227 EHLERINLNKTAITELPSSFENLPGLEELFVEDCSKL 263 (618)
Q Consensus 227 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~ 263 (618)
++|+.|+|++|.++.+| .+..+++|+.|+|++|.+.
T Consensus 175 ~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 56666666666555553 3555555555555555443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.9e-16 Score=149.68 Aligned_cols=177 Identities=20% Similarity=0.212 Sum_probs=106.2
Q ss_pred eEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccc-cccccccCcEEeccCCCCCcccCC--CCCCCCCcEEeccCCC
Q 046284 70 RYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWE-GEKNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCV 146 (618)
Q Consensus 70 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~l~~~~ 146 (618)
+.++.+++.++.+|..+ .++|++|++++|+++.++. .+..+++|++|++++|. ++.++. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-
Confidence 34556666666666544 3467777777777776653 35666777777777665 334432 334444444444443
Q ss_pred CCCcCCCCCCCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhC
Q 046284 147 NLIEFPLISGKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEK 225 (618)
Q Consensus 147 ~l~~~~~~~~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 225 (618)
.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 87 --------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 87 --------------------QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp --------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------------------cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 3344443 2456666666666666655554545666677777777776666555555666
Q ss_pred CCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCcc
Q 046284 226 MEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKC 275 (618)
Q Consensus 226 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 275 (618)
+++|++|++++|.+. +.+++|+.|+++.|...+.+|..++.++.
T Consensus 147 l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 777777777776543 34556777777777777777766665543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=2.4e-16 Score=163.74 Aligned_cols=133 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhcc-CCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFC-KLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
+.+++++++++.+|..+. ..++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466777777777776553 4577788888776666555565 6778888888877777666677777788888888888
Q ss_pred CCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcch
Q 046284 238 AITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSS 293 (618)
Q Consensus 238 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 293 (618)
.++.++. .|..+++|++|++++|.+....|..+..+++|+.|++++|.++.++...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 8776654 4677777777777777766666666766666666666666666665543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=7.2e-16 Score=148.30 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=95.6
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA 238 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 238 (618)
+.+++++++++++|..+. ++|+.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 466777777788877654 678888888887776666677788888888888888777777888888888888888888
Q ss_pred CccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc
Q 046284 239 ITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 239 i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
++.+|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 8877654 5677777777777777666666666666666666655555555443
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.6e-18 Score=190.07 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCc-------------CccchhhhccCCCCCcEEe-cCCccCccccch
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCK-------------RLKRISTRFCKLRSLVDLF-LNGCVNLERFPE 221 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~-------------~~~~l~~~~~~l~~L~~L~-L~~~~~~~~~~~ 221 (618)
.+|+.|+|++|.++.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.+... .++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhh
Confidence 46677778888888888888888888888886654 3445556666677777776 4433211 1100
Q ss_pred ------hhhC--CCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcch
Q 046284 222 ------ILEK--MEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSS 293 (618)
Q Consensus 222 ------~~~~--l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 293 (618)
.+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.++.+| .+
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 0000 1135555555555555554 555555555555555443 44555555555555555555555443 21
Q ss_pred hhccCCCceEecCCCCCCCCCCeEeccCCCCCcC--CccccCCCCCCEEeCCCCCCccCc
Q 046284 294 VAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI--PQEIACLSSLTTLNLSGNSFESLP 351 (618)
Q Consensus 294 ~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~--p~~l~~l~~L~~L~Ls~n~l~~lp 351 (618)
. .+++|+.|++++|.+..+ |..++.+++|+.|+|++|.++.+|
T Consensus 505 ~---------------~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 505 A---------------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp T---------------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred C---------------CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 1 344444444444444443 444444555555555555444443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.6e-16 Score=146.92 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=117.8
Q ss_pred ccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecc
Q 046284 108 EKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLK 187 (618)
Q Consensus 108 ~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~ 187 (618)
...+++|+.|++++|. ++.+|.+..+++|++|++++|. + +.+ ..+..+++|++|+++
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n~-~--------------------~~~-~~l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIH-A--------------------TNY-NPISGLSNLERLRIM 96 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESCC-C--------------------SCC-GGGTTCTTCCEEEEE
T ss_pred hhhcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCCC-C--------------------Ccc-hhhhcCCCCCEEEeE
Confidence 3678888899998886 5677777777777777777762 2 333 357778899999999
Q ss_pred cCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC-CccCCccCCCCCCCCEEEeccCCCcccc
Q 046284 188 YCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA-ITELPSSFENLPGLEELFVEDCSKLDKL 266 (618)
Q Consensus 188 ~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~~~~~~~l 266 (618)
+|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|++|++++|. ++.+| .+..+++|++|++++|.+.+ +
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-C
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-h
Confidence 988877777778888999999999988888778888888888999888887 77776 57788888888888886554 3
Q ss_pred CcccCCCccceEEEecCcccc
Q 046284 267 PDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 267 p~~l~~l~~L~~L~l~~n~l~ 287 (618)
+ .+..+++|+.|++++|.+.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGCSSCCEEEECBC---
T ss_pred H-HhccCCCCCEEEeeCcccC
Confidence 3 5667777777777777654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.5e-16 Score=155.87 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=92.8
Q ss_pred ccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 158 VTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
+..++++++.++.++ .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 444455555555555 4555666666666665533 233 35555566666666555444332 555555555555555
Q ss_pred CCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeE
Q 046284 238 AITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHL 317 (618)
Q Consensus 238 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L 317 (618)
.++.+|.... ++|++|++++| .++.++. + ..+++|+.|
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N------------------------~l~~~~~-l---------------~~l~~L~~L 133 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNN------------------------ELRDTDS-L---------------IHLKNLEIL 133 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSS------------------------CCSBSGG-G---------------TTCTTCCEE
T ss_pred ccCCcCcccc--CcccEEEccCC------------------------ccCCChh-h---------------cCcccccEE
Confidence 5555543222 44555555544 4444321 1 145556666
Q ss_pred eccCCCCCcCCccccCCCCCCEEeCCCCCCccCcccccCCcccceeeccccccC
Q 046284 318 DMRNCAVMEIPQEIACLSSLTTLNLSGNSFESLPASIKQLSQLRSLHLEGCKML 371 (618)
Q Consensus 318 ~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 371 (618)
++++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+..
T Consensus 134 ~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 134 SIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 66666666654 456667777777777777766 45667777777777777644
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=3.1e-15 Score=144.84 Aligned_cols=150 Identities=27% Similarity=0.360 Sum_probs=88.3
Q ss_pred ccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 158 VTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
.+.++.+++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.+....+..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4556666666777776543 66666666666666655555666666666666666554444444555555555555555
Q ss_pred CCccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCe
Q 046284 238 AITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGH 316 (618)
Q Consensus 238 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 316 (618)
.++.++.. +..+++|++|++++ |.++.+|..+. .+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~------------------------N~l~~lp~~~~---------------~l~~L~~ 139 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCC------------------------NKLTELPRGIE---------------RLTHLTH 139 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS------------------------SCCCSCCTTGG---------------GCTTCSE
T ss_pred cCCccChhHhCcchhhCeEeccC------------------------CcccccCcccc---------------cCCCCCE
Confidence 55555432 34444455444444 44444443332 4555556
Q ss_pred EeccCCCCCcCCc-cccCCCCCCEEeCCCCCCc
Q 046284 317 LDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 317 L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l~ 348 (618)
|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666666666543 4666788888888888776
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=4.5e-15 Score=142.71 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=89.4
Q ss_pred CccEEEccCCCCcccCc--cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 157 KVTSLNLSKSAIEEVPS--SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~--~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
.++.|++++|.|+.++. .+..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45666666666666632 3567777777777777766665556777777777777777776666666777777777777
Q ss_pred cCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc
Q 046284 235 NKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 235 ~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
++|.++.+ |..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77777755 455667777777777777666666666666666666666666555
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=7.4e-16 Score=152.48 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=86.6
Q ss_pred CceEEEeCCCCCCccCCCCCCCCceEEEccCCCceeccccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCC
Q 046284 68 KLRYLHWDTYPLRTLPSNFKPKNLVALNLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVN 147 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~ 147 (618)
++..++++++.++.++....+++|++|++++|.++.++ .+..+++|++|+|++|. ++.++.+..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~- 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR- 96 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-
Confidence 34445555555555552224555555555555555554 45555556666665554 4444444445555555544442
Q ss_pred CCcCCCCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCC
Q 046284 148 LIEFPLISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKME 227 (618)
Q Consensus 148 l~~~~~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 227 (618)
++.++.... ++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+. + .++.++
T Consensus 97 --------------------l~~l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~ 150 (263)
T 1xeu_A 97 --------------------LKNLNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS 150 (263)
T ss_dssp --------------------CSCCTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred --------------------cCCcCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence 222222111 445555555544333 22 245555555555555554432 2 455566
Q ss_pred CCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCcc
Q 046284 228 HLERINLNKTAITELPSSFENLPGLEELFVEDCSKLD 264 (618)
Q Consensus 228 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 264 (618)
+|++|++++|.++.+ ..+..+++|+.|++++|....
T Consensus 151 ~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 666666666666655 446666666666666665443
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.4e-17 Score=180.80 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=151.5
Q ss_pred cCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc-------------CccccchhhhCCCCCCEEE-ecCcCCcc
Q 046284 176 ECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV-------------NLERFPEILEKMEHLERIN-LNKTAITE 241 (618)
Q Consensus 176 ~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~-------------~~~~~~~~~~~l~~L~~L~-L~~n~i~~ 241 (618)
..+++|+.|+|++|++ +.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 5689999999999875 5889999999999999998765 4566778888888888888 55554332
Q ss_pred CCc------cCCC--CCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCC
Q 046284 242 LPS------SFEN--LPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAY 313 (618)
Q Consensus 242 lp~------~l~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 313 (618)
++. .+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..+. .+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~---------------~l~~ 487 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALA---------------ALRC 487 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGG---------------GCTT
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhh---------------cCCC
Confidence 221 0000 1258999999996655 676 8999999999999999998887665 6788
Q ss_pred CCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCccC--cccccCCcccceeeccccccCCcCCCC------CCCccEEe
Q 046284 314 LGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFESL--PASIKQLSQLRSLHLEGCKMLQSLPEL------PLCLESLD 385 (618)
Q Consensus 314 L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~~~~l~~lp~l------~~~L~~L~ 385 (618)
|+.|+|++|.+..+| .++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+..+..|.. .++|+.|+
T Consensus 488 L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 488 LEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 899999999999988 889999999999999999987 888999999999999999865544422 45677765
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=143.19 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=97.4
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchh-hhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRIS-TRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
+.+++++|.++++|..+. ..++.|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 477888888888887653 456788888877665533 33566777777777777666655556666666677666666
Q ss_pred CCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCe
Q 046284 238 AITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGH 316 (618)
Q Consensus 238 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 316 (618)
.++.++. .+..+++|++|++++|.+.+..|..+..+ ++|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------------~~L~~ 133 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--------------------------------------SSVRL 133 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC--------------------------------------TTCSE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC--------------------------------------ccCCE
Confidence 6665544 35566666666666665555545545444 44555
Q ss_pred EeccCCCCCcC-CccccCCCCCCEEeCCCCCCc
Q 046284 317 LDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 317 L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~ 348 (618)
|++++|.+..+ |..+..+++|+.|++++|.+.
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555554 455667788888888888776
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=4e-15 Score=154.44 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=119.0
Q ss_pred cEEeccCCCCCCcCCCCC-CCccEEEccCCCCcccCcc-cc-CCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc
Q 046284 138 VTINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEVPSS-IE-CLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV 214 (618)
Q Consensus 138 ~~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l~~~-i~-~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 214 (618)
+.++++++ .+..+|..+ ..++.|+|++|.|+.++.. +. .+++|+.|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34555543 345555433 3578888888888888765 44 89999999999998887777789999999999999999
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCccc---CCCccceEEEecCcccccCC
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNI---GNLKCLFIISAVGSAISQLP 290 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l---~~l~~L~~L~l~~n~l~~~~ 290 (618)
+....+..+..+++|++|+|++|.++.+ |..|..+++|+.|++++|.+....+..+ ..+++|+.|++++|.++.++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 8877777899999999999999999976 5678999999999999997665433334 45677777777777776666
Q ss_pred cchh
Q 046284 291 SSSV 294 (618)
Q Consensus 291 ~~~~ 294 (618)
...+
T Consensus 180 ~~~~ 183 (361)
T 2xot_A 180 LTDL 183 (361)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5433
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=8.1e-15 Score=140.92 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=125.0
Q ss_pred EEeccCCCCCCcCCCCC-CCccEEEccCCCCcccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCc
Q 046284 139 TINFSYCVNLIEFPLIS-GKVTSLNLSKSAIEEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNL 216 (618)
Q Consensus 139 ~L~l~~~~~l~~~~~~~-~~L~~L~L~~n~i~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 216 (618)
.++++++ .+..+|..+ .+++.|++++|.|+.++. .+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.
T Consensus 15 ~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4444443 344455432 478888888888888876 6888999999999999988888889999999999999999988
Q ss_pred cccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccccc
Q 046284 217 ERFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQ 288 (618)
Q Consensus 217 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~ 288 (618)
...+..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777789999999999999999977 5678999999999999998888777789999999999999987763
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=7.6e-15 Score=142.04 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=109.5
Q ss_pred CCccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEe
Q 046284 156 GKVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINL 234 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 234 (618)
.+|+.|+|++|.|..+ |..+..+++|+.|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4677777777777776 556788899999999998876655566788999999999999888777777889999999999
Q ss_pred cCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccccc
Q 046284 235 NKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQ 288 (618)
Q Consensus 235 ~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~ 288 (618)
++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999999999888889999999999987776666677888888888888887664
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.6e-15 Score=134.69 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=99.8
Q ss_pred CCccEEEccCCCCc--ccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEE
Q 046284 156 GKVTSLNLSKSAIE--EVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERIN 233 (618)
Q Consensus 156 ~~L~~L~L~~n~i~--~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 233 (618)
.+|+.|++++|.+. .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46777777777777 7787778888888888888886554 5677888888888888888777777777788888888
Q ss_pred ecCcCCccCC--ccCCCCCCCCEEEeccCCCccccC---cccCCCccceEEEecCcccccCCc
Q 046284 234 LNKTAITELP--SSFENLPGLEELFVEDCSKLDKLP---DNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 234 L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~~~~lp---~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
+++|.++.+| ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8888888776 567777777777777776554433 356666666666666666665554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.3e-15 Score=172.26 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred cchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccC
Q 046284 219 FPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSN 298 (618)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 298 (618)
.+..+..+++|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~---- 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG---- 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG----
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc----
Confidence 345555566666666666666666655556666666666666544 556666666666666666666666665544
Q ss_pred CCceEecCCCCCCCCCCeEeccCCCCCcCCccccCCCCCCEEeCCCCCCcc-CcccccCCc-ccceeeccccccCCcCCC
Q 046284 299 RLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQEIACLSSLTTLNLSGNSFES-LPASIKQLS-QLRSLHLEGCKMLQSLPE 376 (618)
Q Consensus 299 ~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~L~~~~~l~~lp~ 376 (618)
.+++|++|+|++|.+..+|..++.+++|+.|+|++|.++. +|..+..+. .+..|++++|.....+
T Consensus 291 -----------~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-- 357 (727)
T 4b8c_D 291 -----------SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-- 357 (727)
T ss_dssp -----------GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_pred -----------CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC--
Confidence 5667777777777777788888888889999999998884 455554332 2234678888765544
Q ss_pred CCCCccEEeccCC
Q 046284 377 LPLCLESLDLTGC 389 (618)
Q Consensus 377 l~~~L~~L~l~~c 389 (618)
|..|+.|+++.|
T Consensus 358 -p~~l~~l~l~~n 369 (727)
T 4b8c_D 358 -PHERRFIEINTD 369 (727)
T ss_dssp -CCC---------
T ss_pred -ccccceeEeecc
Confidence 456778888776
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.1e-15 Score=134.16 Aligned_cols=128 Identities=21% Similarity=0.303 Sum_probs=68.9
Q ss_pred CCCcEEecCCccCc-cccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEe
Q 046284 203 RSLVDLFLNGCVNL-ERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISA 281 (618)
Q Consensus 203 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 281 (618)
++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK--------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH---------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh---------
Confidence 44455555544443 33444444445555555555555444 34444445555555544443333333333
Q ss_pred cCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCC--ccccCCCCCCEEeCCCCCCccCcc----ccc
Q 046284 282 VGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIP--QEIACLSSLTTLNLSGNSFESLPA----SIK 355 (618)
Q Consensus 282 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~ 355 (618)
+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+|. .+.
T Consensus 94 -----------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 94 -----------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp -----------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred -----------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 444555555555555544 456666777777777777776664 566
Q ss_pred CCcccceeeccccc
Q 046284 356 QLSQLRSLHLEGCK 369 (618)
Q Consensus 356 ~l~~L~~L~L~~~~ 369 (618)
.+++|++|++++|.
T Consensus 145 ~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 145 LLPQLTYLDGYDRE 158 (168)
T ss_dssp TCSSCCEETTEETT
T ss_pred hCccCcEecCCCCC
Confidence 67777777777765
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.6e-14 Score=143.82 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred CCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEec
Q 046284 88 PKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINF 142 (618)
Q Consensus 88 l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l 142 (618)
+++|+.|++++ .++.++ ..|..+++|+.|++++|. +..++ .|..+.++..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecC
Confidence 67777777777 677765 456777777777777765 33444 3444444444443
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=4.6e-15 Score=167.65 Aligned_cols=130 Identities=20% Similarity=0.113 Sum_probs=89.5
Q ss_pred CCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEec
Q 046284 156 GKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLN 235 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 235 (618)
.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 3455566666666677776777777777777777655 66777777777777777777766 567777777777777777
Q ss_pred CcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCcc-ceEEEecCcccc
Q 046284 236 KTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKC-LFIISAVGSAIS 287 (618)
Q Consensus 236 ~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~-L~~L~l~~n~l~ 287 (618)
+|.++.+|..|+.+++|+.|+|++|.+.+.+|..+..+.. +..+++++|.++
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 7777777777777777777777777777666665544322 123556666554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=1.2e-13 Score=129.59 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=90.6
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhh-hccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRIST-RFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
+.+++++++++++|..+.. +|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5667777777777765543 777777777766554443 3667777777777777777777777777777777777777
Q ss_pred CCccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc
Q 046284 238 AITELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 238 ~i~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7776644 3677777777777777777777777777777777777777665
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=4.3e-14 Score=126.84 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=69.7
Q ss_pred CCCEEEecCcCCc--cCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEec
Q 046284 228 HLERINLNKTAIT--ELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYF 305 (618)
Q Consensus 228 ~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 305 (618)
+|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.++...+..+.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---------- 85 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE---------- 85 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH----------
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh----------
Confidence 3444444444444 3444444444444444444433322 3344445555555555555442222210
Q ss_pred CCCCCCCCCCeEeccCCCCCcCC--ccccCCCCCCEEeCCCCCCccCcc----cccCCcccceeeccc
Q 046284 306 SRCKGLAYLGHLDMRNCAVMEIP--QEIACLSSLTTLNLSGNSFESLPA----SIKQLSQLRSLHLEG 367 (618)
Q Consensus 306 ~~~~~l~~L~~L~L~~n~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 367 (618)
.+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 86 ----~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 ----KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ----HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ----hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 3555666666666666643 667778888888888888887765 577788888888763
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=3.4e-14 Score=127.54 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=66.6
Q ss_pred CCccEEEccCCCCc--ccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEE
Q 046284 156 GKVTSLNLSKSAIE--EVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERIN 233 (618)
Q Consensus 156 ~~L~~L~L~~n~i~--~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 233 (618)
.+++.|++++|.+. .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 6666667777777777777765544 4466677777777777766665666666666677777
Q ss_pred ecCcCCccCC--ccCCCCCCCCEEEeccCCC
Q 046284 234 LNKTAITELP--SSFENLPGLEELFVEDCSK 262 (618)
Q Consensus 234 L~~n~i~~lp--~~l~~l~~L~~L~L~~~~~ 262 (618)
+++|.++.++ ..+..+++|++|++++|.+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 6666666543 4455555555555555543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=9.1e-14 Score=128.53 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=83.2
Q ss_pred CCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEe
Q 046284 225 KMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLY 304 (618)
Q Consensus 225 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 304 (618)
.+.+|++|++++|.++.+|......++|++|++++|.+.+. ..++.+++|++|++++|.++.++...+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--------- 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ--------- 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH---------
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh---------
Confidence 34445555555555554443222223555555555544432 3455666666666666666666554431
Q ss_pred cCCCCCCCCCCeEeccCCCCCcCCc--cccCCCCCCEEeCCCCCCccCccc----ccCCcccceeecccccc
Q 046284 305 FSRCKGLAYLGHLDMRNCAVMEIPQ--EIACLSSLTTLNLSGNSFESLPAS----IKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 305 l~~~~~l~~L~~L~L~~n~l~~~p~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~~~~ 370 (618)
.+++|++|++++|.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 86 -----~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 -----ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -----HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -----cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 45667777777777777766 677888888888888888888864 78888888888888764
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=7.8e-14 Score=142.76 Aligned_cols=90 Identities=12% Similarity=0.143 Sum_probs=42.5
Q ss_pred CccceEEEecCcccccCCcchhhccCCCceEecCCC---------CCCCCCC-eEeccCCCCCcCC-ccccCCCCCCEEe
Q 046284 273 LKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC---------KGLAYLG-HLDMRNCAVMEIP-QEIACLSSLTTLN 341 (618)
Q Consensus 273 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~-~L~L~~n~l~~~p-~~l~~l~~L~~L~ 341 (618)
+++|+.+++++|.++.++...|..+.+|+.+++..+ .++++|+ .+++.+ .+..++ ..|.+|++|+.|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 566777777777777777666644444444433321 1333333 333333 333322 3344444444444
Q ss_pred CCCCCCccCc-ccccCCccccee
Q 046284 342 LSGNSFESLP-ASIKQLSQLRSL 363 (618)
Q Consensus 342 Ls~n~l~~lp-~~l~~l~~L~~L 363 (618)
+++|+++.++ ..+.++++|+.+
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEE
T ss_pred eCCCccCccchhhhcCCcchhhh
Confidence 4444444443 234444444444
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=9.1e-13 Score=123.69 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=53.5
Q ss_pred EEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCC
Q 046284 160 SLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAI 239 (618)
Q Consensus 160 ~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i 239 (618)
.+++++++++++|..+. ++|+.|++++|.+. .+|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444444332 34444444444432 3333444444444444444444444444444444444444444444
Q ss_pred ccCCc-cCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCccc
Q 046284 240 TELPS-SFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAI 286 (618)
Q Consensus 240 ~~lp~-~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l 286 (618)
+.++. .|..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 44332 344444444444444433333233344444444444444433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=122.60 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=106.8
Q ss_pred EEeccCCCCCCcCCCC-CCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc
Q 046284 139 TINFSYCVNLIEFPLI-SGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE 217 (618)
Q Consensus 139 ~L~l~~~~~l~~~~~~-~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 217 (618)
.++++++ .+..+|.. ..+++.|++++|.|+.+|..+..+++|+.|++++|.+.+..+..|.++++|++|+|++|.+..
T Consensus 14 ~l~~~~~-~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTS-CCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCC-CCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 4455443 34444442 347888999999999999999999999999999999988888889999999999999999998
Q ss_pred ccchhhhCCCCCCEEEecCcCCccCCc-cCCCCCCCCEEEeccCCCc
Q 046284 218 RFPEILEKMEHLERINLNKTAITELPS-SFENLPGLEELFVEDCSKL 263 (618)
Q Consensus 218 ~~~~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~ 263 (618)
..+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888899999999999999999999887 4889999999999999764
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.3e-11 Score=129.42 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=28.8
Q ss_pred CceEEEeCCCCCCccCCC-CCCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC
Q 046284 68 KLRYLHWDTYPLRTLPSN-FKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP 129 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp 129 (618)
+|+.+.+..+ ++.++.. |.-.+|+.+.+.. .++.+. ..|..+++|+.+++.+|. ++.++
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~ 196 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLP 196 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEec
Confidence 4555555443 4444433 2223455555554 444443 345555555555555543 44443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=1.3e-12 Score=122.56 Aligned_cols=128 Identities=23% Similarity=0.212 Sum_probs=106.5
Q ss_pred cEEeccCCCCCCcCCCC-CCCccEEEccCCCCcccCcc--ccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCcc
Q 046284 138 VTINFSYCVNLIEFPLI-SGKVTSLNLSKSAIEEVPSS--IECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCV 214 (618)
Q Consensus 138 ~~L~l~~~~~l~~~~~~-~~~L~~L~L~~n~i~~l~~~--i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 214 (618)
++++++++ .+..+|.. ..+++.|++++|.|..++.. ++.+++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 34444443 23444442 23778888888888888763 8899999999999999988889999999999999999999
Q ss_pred CccccchhhhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCcccc
Q 046284 215 NLERFPEILEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKL 266 (618)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l 266 (618)
+.+..+..+.++++|++|++++|.++.+ |..+..+++|++|++++|+.....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9988888899999999999999999965 778999999999999999876543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=2e-12 Score=119.48 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=77.0
Q ss_pred ccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 158 VTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
.+.+++++++++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3456666666666665442 56777777776655544445566666666666666665555555666666666666666
Q ss_pred CCccCCcc-CCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccc
Q 046284 238 AITELPSS-FENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 238 ~i~~lp~~-l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
.++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66665543 456666666666666554433334455566666666665554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=3.4e-12 Score=117.98 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=80.3
Q ss_pred CCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCC
Q 046284 229 LERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC 308 (618)
Q Consensus 229 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 308 (618)
.+.+++++++++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++.++...+
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF-------------- 72 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--------------
Confidence 345666666666666433 2566777777666555444555666677777777766666655433
Q ss_pred CCCCCCCeEeccCCCCCcCCcc-ccCCCCCCEEeCCCCCCccCccc-ccCCcccceeeccccccCC
Q 046284 309 KGLAYLGHLDMRNCAVMEIPQE-IACLSSLTTLNLSGNSFESLPAS-IKQLSQLRSLHLEGCKMLQ 372 (618)
Q Consensus 309 ~~l~~L~~L~L~~n~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~~l~ 372 (618)
..+++|++|++++|.+..+|.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|+...
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 1455666666666666665543 46677777777777777766644 3567777777777775443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=4.9e-13 Score=123.59 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=63.7
Q ss_pred CccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecC
Q 046284 157 KVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNK 236 (618)
Q Consensus 157 ~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 236 (618)
+|+.|++++|.++.++......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 34444444444455433222223666666666654443 3455566666666666655544334445566666666666
Q ss_pred cCCccCCc--cCCCCCCCCEEEeccCCCccccCcc----cCCCccceEEEecCcc
Q 046284 237 TAITELPS--SFENLPGLEELFVEDCSKLDKLPDN----IGNLKCLFIISAVGSA 285 (618)
Q Consensus 237 n~i~~lp~--~l~~l~~L~~L~L~~~~~~~~lp~~----l~~l~~L~~L~l~~n~ 285 (618)
|.++.+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 66655554 4555555555555555443 22332 4444444444444443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=9.4e-15 Score=138.00 Aligned_cols=145 Identities=20% Similarity=0.191 Sum_probs=91.0
Q ss_pred CCCCcEEecCCccCccccc------hhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCcc
Q 046284 202 LRSLVDLFLNGCVNLERFP------EILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKC 275 (618)
Q Consensus 202 l~~L~~L~L~~~~~~~~~~------~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 275 (618)
...++.++++++.+.+..| ..+..+++|++|++++|.++.+| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3344444444444433333 36667777777777777777766 6666777777777777544 55665666677
Q ss_pred ceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCc--cccCCCCCCEEeCCCCCCccCc-c
Q 046284 276 LFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQ--EIACLSSLTTLNLSGNSFESLP-A 352 (618)
Q Consensus 276 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~--~l~~l~~L~~L~Ls~n~l~~lp-~ 352 (618)
|+.|++++|.++.++ .+. .+++|++|++++|.+..++. .+..+++|+.|++++|.+...+ .
T Consensus 95 L~~L~L~~N~l~~l~-~~~---------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 95 LEELWISYNQIASLS-GIE---------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSEEEEEEEECCCHH-HHH---------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCEEECcCCcCCcCC-ccc---------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 777777777776654 221 34556666666677766543 5677788888888888776432 2
Q ss_pred ----------cccCCcccceee
Q 046284 353 ----------SIKQLSQLRSLH 364 (618)
Q Consensus 353 ----------~l~~l~~L~~L~ 364 (618)
.+..+++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccchHHHHHHHHHhCCCcEEEC
Confidence 256677777776
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=2.9e-10 Score=119.16 Aligned_cols=309 Identities=12% Similarity=0.105 Sum_probs=166.3
Q ss_pred cccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCC-C-CCCCceE
Q 046284 16 KRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVA 93 (618)
Q Consensus 16 ~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~ 93 (618)
.++.|...||.++++|+.+.+..+ + ..+.+..+.-..+|+.+++..+ ++.++.. | .+.+|+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i--------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~ 121 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-V--------------REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKS 121 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-C--------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-c--------------cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchh
Confidence 356688889999999999888652 1 4565555544357888888643 6666544 3 5677777
Q ss_pred EEccCCCceecc-ccccccccCcEEeccCCCCCcccCCCCCCCCCcEEeccCCCCCCcCC----CCCCCccEEEccCCCC
Q 046284 94 LNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVNLIEFP----LISGKVTSLNLSKSAI 168 (618)
Q Consensus 94 L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~~~----~~~~~L~~L~L~~n~i 168 (618)
+.+..+ ++.+. ..+..+..++.........+ .-..+.++.+|+.+.+... +..++ ....+|+.+.+..+ +
T Consensus 122 i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~ 196 (394)
T 4fs7_A 122 ILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVI-GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-L 196 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCCCSEEECCTTCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-C
T ss_pred hcccCc-eeeecceeeecccccccccCcccccc-chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-c
Confidence 666544 33333 33444443333322222111 1124566677777776543 11111 12234444444433 3
Q ss_pred cccCc-cccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCC
Q 046284 169 EEVPS-SIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFE 247 (618)
Q Consensus 169 ~~l~~-~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~ 247 (618)
+.+.. .+.++..|+.+.+..+. ..+........+|+.+.+... ....-...+.++..|+.+.+..+...--...+.
T Consensus 197 ~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~ 273 (394)
T 4fs7_A 197 KIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFY 273 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTT
T ss_pred eEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccc
Confidence 33322 34455555555554422 112222233455555555432 222223345556666666665554333334455
Q ss_pred CCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC
Q 046284 248 NLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI 327 (618)
Q Consensus 248 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~ 327 (618)
.+..++.+...... .....+..+.+|+.+.+..+ ++.++...|. ++.+|+.+++.+ .+..+
T Consensus 274 ~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~--------------~c~~L~~i~lp~-~v~~I 334 (394)
T 4fs7_A 274 NCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFE--------------SCTSLVSIDLPY-LVEEI 334 (394)
T ss_dssp TCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTT--------------TCTTCCEECCCT-TCCEE
T ss_pred cccccceeccCcee---eccccccccccccccccccc-cceechhhhc--------------CCCCCCEEEeCC-cccEE
Confidence 66666666554432 11234556666666666543 5555555554 445555555543 24444
Q ss_pred -CccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeecccc
Q 046284 328 -PQEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHLEGC 368 (618)
Q Consensus 328 -p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~ 368 (618)
...|.+|.+|+.+++..+ ++.++ .++.+|++|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 345777888999888766 66665 56788888998888654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.8e-14 Score=134.75 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=99.2
Q ss_pred CCCCcEEecccCcCccchhh------hccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCCccCCCCCC
Q 046284 178 LTDLKKLNLKYCKRLKRIST------RFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELPSSFENLPG 251 (618)
Q Consensus 178 l~~L~~L~L~~~~~~~~l~~------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~ 251 (618)
...++.++++++.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34444445554444444333 66677777777777776555 45 677777777777777777777776666777
Q ss_pred CCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc-chhhccCCCceEecCCCCCCCCCCeEeccCCCCCcCCc-
Q 046284 252 LEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS-SSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEIPQ- 329 (618)
Q Consensus 252 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~p~- 329 (618)
|++|++++|.+.+ +| .+..+++|+.|++++|.++.++. ..+ ..+++|++|++++|.+...+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l--------------~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKL--------------AALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHH--------------TTTTTCSEEEECSCHHHHHHHT
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHH--------------hcCCCCCEEEecCCcccccccc
Confidence 8888888776554 44 46777788888888887776554 111 156677777777777655322
Q ss_pred ----------cccCCCCCCEEeCCCCCCc
Q 046284 330 ----------EIACLSSLTTLNLSGNSFE 348 (618)
Q Consensus 330 ----------~l~~l~~L~~L~Ls~n~l~ 348 (618)
.+..+++|+.|| ++.++
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 267788888887 55554
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.26 E-value=3.9e-10 Score=118.05 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=140.7
Q ss_pred ccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCCCCccCCC-C-CCCCceEE
Q 046284 17 RINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVAL 94 (618)
Q Consensus 17 ~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 94 (618)
+..+...+|.++ +|+.+.+..+ + ..++...+.-. +|+.+.+.. .++.++.. | .+.+|+.+
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i--------------~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-L--------------KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-C--------------CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCEehHhhcccC-CccEEEeCCC-c--------------cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 677889999996 7999998774 2 56666666553 799999986 78888754 5 78999999
Q ss_pred EccCCCceeccccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCCCCCCccEEEccCCCCcccC
Q 046284 95 NLSCSKVEQLWEGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPLISGKVTSLNLSKSAIEEVP 172 (618)
Q Consensus 95 ~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~L~~n~i~~l~ 172 (618)
++++|+++.++...-...+|+.+.|..+ ++.++ .|.++++|+.+++..+ +..++.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~------------------- 242 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQ------------------- 242 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECT-------------------
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccc-------------------
Confidence 9999999999865555799999999865 66666 6778899999998764 322221
Q ss_pred ccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCc-----cccchhhhCCCCCCEEEecCcCCccCC-ccC
Q 046284 173 SSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNL-----ERFPEILEKMEHLERINLNKTAITELP-SSF 246 (618)
Q Consensus 173 ~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~i~~lp-~~l 246 (618)
..+.+ .+|+.+.+.+ .+...-..+|.++++|+.+++.++... ...+..|.++++|+.+.+. +.++.++ ..|
T Consensus 243 ~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF 319 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL 319 (401)
T ss_dssp TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT
T ss_pred ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh
Confidence 11222 3444444422 222222333444445555544443322 2223445555555555555 2344442 234
Q ss_pred CCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchh
Q 046284 247 ENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSV 294 (618)
Q Consensus 247 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 294 (618)
.++++|+.+.+..+ ....-...|.++ +|+.+++.+|.+..++...+
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 55555555555433 222223445555 56666666555555554444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4.3e-11 Score=109.72 Aligned_cols=104 Identities=22% Similarity=0.293 Sum_probs=79.8
Q ss_pred ccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 158 VTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 158 L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
.+.+++++|.++++|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 78888888888877777777888888888888888777666666777888888888888
Q ss_pred CCccCCc-cCCCCCCCCEEEeccCCCc
Q 046284 238 AITELPS-SFENLPGLEELFVEDCSKL 263 (618)
Q Consensus 238 ~i~~lp~-~l~~l~~L~~L~L~~~~~~ 263 (618)
.++.+|. .+..+++|++|++++|+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8887765 3677777777777777554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=3.9e-11 Score=110.44 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=80.3
Q ss_pred CEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCCC
Q 046284 230 ERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCK 309 (618)
Q Consensus 230 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 309 (618)
+.++++++.++++|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.++.++...+ .
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--------------~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF--------------D 78 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------------T
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--------------C
Confidence 678888888888887664 788888888888777777788888888888888888887776543 2
Q ss_pred CCCCCCeEeccCCCCCcCCcc-ccCCCCCCEEeCCCCCCccCcc
Q 046284 310 GLAYLGHLDMRNCAVMEIPQE-IACLSSLTTLNLSGNSFESLPA 352 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~ 352 (618)
++++|++|+|++|.+..+|.. +..+++|+.|+|++|.+...+.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 466677777777777776654 6667777777777777765554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=4.7e-11 Score=109.91 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=75.5
Q ss_pred cEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcC
Q 046284 159 TSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTA 238 (618)
Q Consensus 159 ~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 238 (618)
+.+++++++++++|..+. ++|+.|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 577888888888887664 778888888887777667777777777777777777666555566777777777777777
Q ss_pred CccCCcc-CCCCCCCCEEEeccCCCc
Q 046284 239 ITELPSS-FENLPGLEELFVEDCSKL 263 (618)
Q Consensus 239 i~~lp~~-l~~l~~L~~L~L~~~~~~ 263 (618)
++.+|.. +..+++|++|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777654 666777777777776543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=7.1e-11 Score=108.29 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCCC
Q 046284 229 LERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRC 308 (618)
Q Consensus 229 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 308 (618)
.+.++++++.++++|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.++.++...+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f-------------- 74 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-------------- 74 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc--------------
Confidence 4678888888888887653 788888888887777777778888888888888888777776554
Q ss_pred CCCCCCCeEeccCCCCCcCCc-cccCCCCCCEEeCCCCCCccC
Q 046284 309 KGLAYLGHLDMRNCAVMEIPQ-EIACLSSLTTLNLSGNSFESL 350 (618)
Q Consensus 309 ~~l~~L~~L~L~~n~l~~~p~-~l~~l~~L~~L~Ls~n~l~~l 350 (618)
.++++|++|+|++|.+..+|. .+..+++|+.|+|++|.++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 245666666677777776655 366677777777777766533
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=1.4e-08 Score=106.28 Aligned_cols=294 Identities=12% Similarity=0.092 Sum_probs=166.8
Q ss_pred CCccCCC-C-CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCC
Q 046284 79 LRTLPSN-F-KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPL 153 (618)
Q Consensus 79 l~~lp~~-~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~ 153 (618)
++++... | ++.+|+.+.+.. .++.+. ..|.++++|+.+++..+ ++.++ .+.++.+|+.+.+... +..+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecc
Confidence 4444433 3 556666666653 356654 45666667777766543 44443 3455555555444332 111110
Q ss_pred -CCC--CccEEEccCCCCccc-CccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCC
Q 046284 154 -ISG--KVTSLNLSKSAIEEV-PSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHL 229 (618)
Q Consensus 154 -~~~--~L~~L~L~~n~i~~l-~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 229 (618)
.+. .+....+.. .+..+ ...+.++++|+.+.+.++ ....-...|.++.+|+.+.+..+ ........+.++..|
T Consensus 134 ~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 134 EAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccccccCc-cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 000 111211111 11222 235667778888887653 23333455777788888877654 333334567777777
Q ss_pred CEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCcchhhccCCCceEecCC--
Q 046284 230 ERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSR-- 307 (618)
Q Consensus 230 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-- 307 (618)
+.+.+..+.. .+........+|+.+.+... ....-...+..+..|+.+.+..+ +..+....+..+..++.+....
T Consensus 211 ~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 211 ENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE
T ss_pred ceeecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee
Confidence 7776655432 22333344566777776543 22222345666777777777654 3345555555666666655433
Q ss_pred -----CCCCCCCCeEeccCCCCCcCC-ccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeeccccccCCcCCC----
Q 046284 308 -----CKGLAYLGHLDMRNCAVMEIP-QEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHLEGCKMLQSLPE---- 376 (618)
Q Consensus 308 -----~~~l~~L~~L~L~~n~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~---- 376 (618)
+.++.+|+.+.+.++ +..+. ..|.++.+|+.++|..+ ++.++ .++.+|.+|+.+++..+ ++.+++
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~ 363 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ 363 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh
Confidence 236778888888654 55554 45788999999999754 77775 57889999999999765 455543
Q ss_pred CCCCccEEecc
Q 046284 377 LPLCLESLDLT 387 (618)
Q Consensus 377 l~~~L~~L~l~ 387 (618)
-..+|+.+++.
T Consensus 364 ~C~~L~~i~lp 374 (394)
T 4fs7_A 364 GCINLKKVELP 374 (394)
T ss_dssp TCTTCCEEEEE
T ss_pred CCCCCCEEEEC
Confidence 12455655553
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=3.1e-11 Score=125.22 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCCcEEecccCcCccchhhhc----c-CCCCCcEEecCCccCccccchh-hhCCCCCCEEEecCcCCc
Q 046284 179 TDLKKLNLKYCKRLKRISTRF----C-KLRSLVDLFLNGCVNLERFPEI-LEKMEHLERINLNKTAIT 240 (618)
Q Consensus 179 ~~L~~L~L~~~~~~~~l~~~~----~-~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~n~i~ 240 (618)
++|+.|++++|.+.......+ . ..++|++|+|++|.+....... ...+++|++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 556666666666544322222 1 1246666666666554322211 222345556666665554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=2.8e-09 Score=109.47 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=84.9
Q ss_pred EEEccCC-CCcccCccccCCCCCcEEeccc-CcCccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCc
Q 046284 160 SLNLSKS-AIEEVPSSIECLTDLKKLNLKY-CKRLKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKT 237 (618)
Q Consensus 160 ~L~L~~n-~i~~l~~~i~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n 237 (618)
.++.+++ +++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566776 7888998 98999999999996 8777777778999999999999999988888888999999999999999
Q ss_pred CCccCCccCCCCCCCCEEEeccCCCc
Q 046284 238 AITELPSSFENLPGLEELFVEDCSKL 263 (618)
Q Consensus 238 ~i~~lp~~l~~l~~L~~L~L~~~~~~ 263 (618)
.++.+|..+.....|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 99988775444334888888887654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=1.1e-10 Score=121.14 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCccEEEccCCCCcccC-----cccc-CCCCCcEEecccCcCccchhhhc-cCCCCCcEEecCCccCccccchhhh----
Q 046284 156 GKVTSLNLSKSAIEEVP-----SSIE-CLTDLKKLNLKYCKRLKRISTRF-CKLRSLVDLFLNGCVNLERFPEILE---- 224 (618)
Q Consensus 156 ~~L~~L~L~~n~i~~l~-----~~i~-~l~~L~~L~L~~~~~~~~l~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~---- 224 (618)
.+|+.|++++|.++... ..+. ..++|+.|+|++|.+.......+ ..+++|++|+|++|.+.......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35566666666654321 1122 22456666666665433222222 2244566666666655433222221
Q ss_pred -CCCCCCEEEecCcCCc
Q 046284 225 -KMEHLERINLNKTAIT 240 (618)
Q Consensus 225 -~l~~L~~L~L~~n~i~ 240 (618)
..++|++|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 2344444444444443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=3.5e-07 Score=94.99 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=62.4
Q ss_pred hhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCccCC-ccCCCCCCCCEEEeccCCCccccCcccCCCcc
Q 046284 197 TRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITELP-SSFENLPGLEELFVEDCSKLDKLPDNIGNLKC 275 (618)
Q Consensus 197 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 275 (618)
..+....+|+.+.+..+ ........+.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ....-...|.++.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33555666666666542 22333445666677777777654 44442 34666777777777543 22222345677777
Q ss_pred ceEEEecCcccccCCcchhhccCCCceEec
Q 046284 276 LFIISAVGSAISQLPSSSVAYSNRLGVLYF 305 (618)
Q Consensus 276 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 305 (618)
|+.+.+.++.++.++...|..+.+|+.+.+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEc
Confidence 777777777777777776655555555544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=2.5e-07 Score=96.70 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=81.1
Q ss_pred ccccCchhhccCc-cceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCCC---CCccCCC-C-CCCC
Q 046284 17 RINLDPGAFTNMS-NMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTYP---LRTLPSN-F-KPKN 90 (618)
Q Consensus 17 ~~~l~~~~f~~l~-~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~---l~~lp~~-~-~l~~ 90 (618)
...|...||.+++ .|+.+.+-.. + ..+.+..+.-..+|+.+.+..+. ++.++.. | .+.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-v--------------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~ 115 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-V--------------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSE 115 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-C--------------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-e--------------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhccc
Confidence 4556777888774 5788777552 1 44555444444577777776542 5566543 3 5667
Q ss_pred ceEEEccCCCceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcEEeccCCCCCCcCCC---CCCCccEEEcc
Q 046284 91 LVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVNLIEFPL---ISGKVTSLNLS 164 (618)
Q Consensus 91 L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~~~~---~~~~L~~L~L~ 164 (618)
|+.+.+..+ ++.+. ..+..+.+|+.+.+... +..++ .+..+.+|+.+.+... +..+.. ...+|+.+.+.
T Consensus 116 L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 116 LTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred ceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEEC
Confidence 776666544 44554 45667777777777653 33333 4556667777766543 222111 11245555554
Q ss_pred CCCCcccCccccCCCCCcEEec
Q 046284 165 KSAIEEVPSSIECLTDLKKLNL 186 (618)
Q Consensus 165 ~n~i~~l~~~i~~l~~L~~L~L 186 (618)
.+-...-...+..+.++.....
T Consensus 191 ~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 191 AKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEE
T ss_pred Ccccccccchhhhccccceecc
Confidence 4332222233444444444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=8.5e-09 Score=105.90 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=33.0
Q ss_pred cchhhhCCCCCCEEEecC-cCCccCC-ccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEecCcccccCCc
Q 046284 219 FPEILEKMEHLERINLNK-TAITELP-SSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISAVGSAISQLPS 291 (618)
Q Consensus 219 ~~~~~~~l~~L~~L~L~~-n~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 291 (618)
+|. +..+++|++|+|++ |.++.+| ..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|.++.+|.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 444 44444555555543 4554443 234444445554444444444444444444444444444444444433
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.78 E-value=1.1e-06 Score=91.82 Aligned_cols=276 Identities=13% Similarity=0.142 Sum_probs=141.9
Q ss_pred CceEEEeCCCCCCccCCC-C-CCCCceEEEccCCC---ceecc-ccccccccCcEEeccCCCCCcccC--CCCCCCCCcE
Q 046284 68 KLRYLHWDTYPLRTLPSN-F-KPKNLVALNLSCSK---VEQLW-EGEKNFKYLSALSFEGCKSLRSFP--SNLHFVCPVT 139 (618)
Q Consensus 68 ~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~---i~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~ 139 (618)
.|+.+.+.. .++.+... | ++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++ .+..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 477777753 36666544 3 67777777776553 55554 45666777777666554 44444 4566677777
Q ss_pred EeccCCCCCCcCC----CCCCCccEEEccCCCCcccCccccCCCCCcEEecccCcCccchhhhccCCCCCcEEecCCccC
Q 046284 140 INFSYCVNLIEFP----LISGKVTSLNLSKSAIEEVPSSIECLTDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVN 215 (618)
Q Consensus 140 L~l~~~~~l~~~~----~~~~~L~~L~L~~n~i~~l~~~i~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~ 215 (618)
+.+... +..+. ....+|+.+.+..+ ++.+........+|+.+.+... ....-..++..+.+++.........
T Consensus 142 i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceeccccccc
Confidence 777542 22211 12234555555433 3444333223345666555432 1222233345555555554433211
Q ss_pred ccccchh-------------hhCCCCCCEEEecCcCCccC-CccCCCCCCCCEEEeccCCCccccCcccCCCccceEEEe
Q 046284 216 LERFPEI-------------LEKMEHLERINLNKTAITEL-PSSFENLPGLEELFVEDCSKLDKLPDNIGNLKCLFIISA 281 (618)
Q Consensus 216 ~~~~~~~-------------~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 281 (618)
....... +.....+..+.+.. .++.+ ...|.++..|+.+.+.+. ....-...|.+++.|+.+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEF 295 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred ccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccC
Confidence 1100000 00111122222211 11111 123556666666666543 22223345566666666666
Q ss_pred cCcccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCcC-CccccCCCCCCEEeCCCCCCccCc-ccccCCcc
Q 046284 282 VGSAISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVMEI-PQEIACLSSLTTLNLSGNSFESLP-ASIKQLSQ 359 (618)
Q Consensus 282 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~ 359 (618)
. +.++.++...|..+ .+|+.++|.++ +..+ ...|.+|.+|+.+.|..+ ++.+. .++.+|++
T Consensus 296 ~-~~i~~I~~~aF~~c--------------~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 296 S-SRITELPESVFAGC--------------ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp C-TTCCEECTTTTTTC--------------TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred C-CcccccCceeecCC--------------CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 4 34555555555444 44555555432 4444 345777888888888654 66665 56788888
Q ss_pred cceeeccccc
Q 046284 360 LRSLHLEGCK 369 (618)
Q Consensus 360 L~~L~L~~~~ 369 (618)
|+.+++.++.
T Consensus 359 L~~i~~~~~~ 368 (394)
T 4gt6_A 359 LNNIEYSGSR 368 (394)
T ss_dssp CCEEEESSCH
T ss_pred CCEEEECCce
Confidence 9988888764
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=1e-08 Score=105.42 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=90.9
Q ss_pred ccCCCCCcEEecCCccC---------ccccchhhhCCCCCCEEEecCcCCccCCccCCCCCCCCEEEeccCCCccccCcc
Q 046284 199 FCKLRSLVDLFLNGCVN---------LERFPEILEKMEHLERINLNKTAITELPSSFENLPGLEELFVEDCSKLDKLPDN 269 (618)
Q Consensus 199 ~~~l~~L~~L~L~~~~~---------~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~ 269 (618)
+.++++|+.|.+..... .+.+...+..+++|+.|+++++.-..++. + .+++|+.|++..|.+.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34455666666644221 12344566677788888887763224444 3 3678888888877654333223
Q ss_pred cC--CCccceEEEecCc--ccccCCcchhhccCCCceEecCCCCCCCCCCeEeccCCCCCc-CCccc---cCCCCCCEEe
Q 046284 270 IG--NLKCLFIISAVGS--AISQLPSSSVAYSNRLGVLYFSRCKGLAYLGHLDMRNCAVME-IPQEI---ACLSSLTTLN 341 (618)
Q Consensus 270 l~--~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~L~~n~l~~-~p~~l---~~l~~L~~L~ 341 (618)
+. .+++|+.|+|+.+ ....-. . ...+..+ +. -..+++|+.|++++|.+.. .+..+ ..+++|++|+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~-~----~~~l~~~-l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDG-D----MNVFRPL-FS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCS-C----GGGTGGG-SC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred HHHccCCCCcEEEEeccccccccch-h----HHHHHHH-Hh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 32 5778888877532 111000 0 0000000 00 0246788888888877764 11111 2467888888
Q ss_pred CCCCCCcc-----CcccccCCcccceeecccccc
Q 046284 342 LSGNSFES-----LPASIKQLSQLRSLHLEGCKM 370 (618)
Q Consensus 342 Ls~n~l~~-----lp~~l~~l~~L~~L~L~~~~~ 370 (618)
|+.|.+.. ++..+..+++|+.|+|++|..
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 88887763 444556677788888877753
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=8.7e-06 Score=84.35 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCCCeEeccCCCCCcCC-ccccCCCCCCEEeCCCCCCccCc-ccccCCcccceeec
Q 046284 310 GLAYLGHLDMRNCAVMEIP-QEIACLSSLTTLNLSGNSFESLP-ASIKQLSQLRSLHL 365 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 365 (618)
++.+|+.+.+.++.+..++ ..|.+|.+|+.+.|..+ ++.+. .++.+|.+|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4455555555555555543 34555666666666543 44444 34555556655554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.4e-08 Score=102.59 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=103.1
Q ss_pred CccccCCCCCcEEecccCcC---------ccchhhhccCCCCCcEEecCCccCccccchhhhCCCCCCEEEecCcCCcc-
Q 046284 172 PSSIECLTDLKKLNLKYCKR---------LKRISTRFCKLRSLVDLFLNGCVNLERFPEILEKMEHLERINLNKTAITE- 241 (618)
Q Consensus 172 ~~~i~~l~~L~~L~L~~~~~---------~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~- 241 (618)
..++..+++|+.|.+.+... .+.+...+..+++|+.|.+++|.... ++. + .+++|++|++..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChH
Confidence 33455566777776654321 11244445667788888887763222 222 2 26778888887776652
Q ss_pred CCccC--CCCCCCCEEEeccCC--C-----ccccCccc--CCCccceEEEecCcccccCCcchhhccCCCceEecCCCCC
Q 046284 242 LPSSF--ENLPGLEELFVEDCS--K-----LDKLPDNI--GNLKCLFIISAVGSAISQLPSSSVAYSNRLGVLYFSRCKG 310 (618)
Q Consensus 242 lp~~l--~~l~~L~~L~L~~~~--~-----~~~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 310 (618)
....+ ..+++|+.|+|+.+. . ...+...+ ..+++|+.|++.+|.+.......... ...
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-----------a~~ 277 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-----------SDI 277 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-----------CSS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-----------Ccc
Confidence 11112 267788888875321 1 11111122 24778888888887765321111100 114
Q ss_pred CCCCCeEeccCCCCCc-----CCccccCCCCCCEEeCCCCCCccC-cccccC-Ccccceeeccccc
Q 046284 311 LAYLGHLDMRNCAVME-----IPQEIACLSSLTTLNLSGNSFESL-PASIKQ-LSQLRSLHLEGCK 369 (618)
Q Consensus 311 l~~L~~L~L~~n~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~-l~~L~~L~L~~~~ 369 (618)
+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.++.- -..+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6788888888888876 344556689999999999987622 112221 1 3456776654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=1.4e-06 Score=80.49 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=72.0
Q ss_pred ccccCCCCCcEEecccC-cCcc----chhhhccCCCCCcEEecCCccCccc----cchhhhCCCCCCEEEecCcCCcc--
Q 046284 173 SSIECLTDLKKLNLKYC-KRLK----RISTRFCKLRSLVDLFLNGCVNLER----FPEILEKMEHLERINLNKTAITE-- 241 (618)
Q Consensus 173 ~~i~~l~~L~~L~L~~~-~~~~----~l~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~n~i~~-- 241 (618)
..+...++|+.|+|++| .+.. .+...+...++|++|+|++|.+... +.+.+...++|++|+|++|.|+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556677888888777 5433 2344456667788888888776542 34445556778888888877772
Q ss_pred ---CCccCCCCCCCCEEEe--ccCCCccc----cCcccCCCccceEEEecCcccc
Q 046284 242 ---LPSSFENLPGLEELFV--EDCSKLDK----LPDNIGNLKCLFIISAVGSAIS 287 (618)
Q Consensus 242 ---lp~~l~~l~~L~~L~L--~~~~~~~~----lp~~l~~l~~L~~L~l~~n~l~ 287 (618)
+...+...++|++|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455666677777777 66655432 2334444566666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=2e-06 Score=79.50 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=63.5
Q ss_pred cCccccCCCCCcEEecccCcCccc----hhhhccCCCCCcEEecCCccCccc----cchhhhCCCCCCEEEe--cCcCCc
Q 046284 171 VPSSIECLTDLKKLNLKYCKRLKR----ISTRFCKLRSLVDLFLNGCVNLER----FPEILEKMEHLERINL--NKTAIT 240 (618)
Q Consensus 171 l~~~i~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L--~~n~i~ 240 (618)
+...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|++ ++|.++
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 445566677888888888876442 334455567788888888877643 3556667778888888 778877
Q ss_pred c-----CCccCCCCCCCCEEEeccCCC
Q 046284 241 E-----LPSSFENLPGLEELFVEDCSK 262 (618)
Q Consensus 241 ~-----lp~~l~~l~~L~~L~L~~~~~ 262 (618)
. +...+...++|++|++++|.+
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 344555667888888888764
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=4.1e-06 Score=75.81 Aligned_cols=47 Identities=13% Similarity=0.296 Sum_probs=30.4
Q ss_pred ccCCCC-CCCCceEEEccCCCceecc-ccccccccCcEEeccCCCCCcc
Q 046284 81 TLPSNF-KPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCKSLRS 127 (618)
Q Consensus 81 ~lp~~~-~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~ 127 (618)
.+|... .-.+|++||++++.|+... ..+..+++|++|+|++|..+++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 445543 3457888888888876532 3456677777777777765543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=1.2e-05 Score=72.81 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred CCCcEEecccCcCccchhhhccCCCCCcEEecCCccCcc-ccchhhhCC----CCCCEEEecCc-CCccC-CccCCCCCC
Q 046284 179 TDLKKLNLKYCKRLKRISTRFCKLRSLVDLFLNGCVNLE-RFPEILEKM----EHLERINLNKT-AITEL-PSSFENLPG 251 (618)
Q Consensus 179 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l----~~L~~L~L~~n-~i~~l-p~~l~~l~~ 251 (618)
.+|+.||+++|.+...--..+.++++|++|+|++|...+ .--..+..+ ++|++|+++++ +|+.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666444333345566666666666665332 222333333 24666666664 35410 112445677
Q ss_pred CCEEEeccCCCcc
Q 046284 252 LEELFVEDCSKLD 264 (618)
Q Consensus 252 L~~L~L~~~~~~~ 264 (618)
|++|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777776544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=3.4e-06 Score=82.24 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCCCCcEEecCCccCcc--ccchhhhCCCCCCEEEecCcCCccCCccCCCCC--CCCEEEeccCCCcccc
Q 046284 201 KLRSLVDLFLNGCVNLE--RFPEILEKMEHLERINLNKTAITELPSSFENLP--GLEELFVEDCSKLDKL 266 (618)
Q Consensus 201 ~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~~~~~~~l 266 (618)
++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.++.+. .+..+. +|++|++++|++.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 34555555555555544 33444555555666666665555441 122222 5555555555544433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=5.4e-05 Score=73.73 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=38.6
Q ss_pred CCCCCCeEeccCCCCCcC---CccccCCCCCCEEeCCCCCCccCcccccCCc--ccceeeccccccCCcCC
Q 046284 310 GLAYLGHLDMRNCAVMEI---PQEIACLSSLTTLNLSGNSFESLPASIKQLS--QLRSLHLEGCKMLQSLP 375 (618)
Q Consensus 310 ~l~~L~~L~L~~n~l~~~---p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~~~~l~~lp 375 (618)
++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|+....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 355666666666666653 344456777777777777776553 233333 66677777766554444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.21 E-value=0.0036 Score=57.57 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=66.7
Q ss_pred cCCCCCcEEecccC-cCcc----chhhhccCCCCCcEEecCCccCcc----ccchhhhCCCCCCEEEecCcCCc-----c
Q 046284 176 ECLTDLKKLNLKYC-KRLK----RISTRFCKLRSLVDLFLNGCVNLE----RFPEILEKMEHLERINLNKTAIT-----E 241 (618)
Q Consensus 176 ~~l~~L~~L~L~~~-~~~~----~l~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~n~i~-----~ 241 (618)
.+-+.|+.|+|+++ .+.. .+...+..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|+.|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567777777765 3322 234455666778888888877653 33445556677888888888877 3
Q ss_pred CCccCCCCCCCCEEEeccCCC--cc-----ccCcccCCCccceEEEecCcc
Q 046284 242 LPSSFENLPGLEELFVEDCSK--LD-----KLPDNIGNLKCLFIISAVGSA 285 (618)
Q Consensus 242 lp~~l~~l~~L~~L~L~~~~~--~~-----~lp~~l~~l~~L~~L~l~~n~ 285 (618)
+-..+..-+.|++|+|++|.. .+ .+...+..-+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344556666788888876522 11 123334445566666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.18 E-value=0.0069 Score=51.84 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=35.8
Q ss_pred eEeccCCCCC--cCCccccCCCCCCEEeCCCCCCccCcc-cccCCcccceeeccccc
Q 046284 316 HLDMRNCAVM--EIPQEIACLSSLTTLNLSGNSFESLPA-SIKQLSQLRSLHLEGCK 369 (618)
Q Consensus 316 ~L~L~~n~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 369 (618)
.++.+++.++ .+|..+ .++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 666543 2468888888888887774 45677777777777775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.88 E-value=0.0043 Score=57.05 Aligned_cols=90 Identities=8% Similarity=-0.014 Sum_probs=50.1
Q ss_pred cCccccCCCCCcEEecccCcCccc----hhhhccCCCCCcEEecCCccCccc----cchhhhCCCCCCEEEecCcC---C
Q 046284 171 VPSSIECLTDLKKLNLKYCKRLKR----ISTRFCKLRSLVDLFLNGCVNLER----FPEILEKMEHLERINLNKTA---I 239 (618)
Q Consensus 171 l~~~i~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~n~---i 239 (618)
+.+.+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+... +.+.+..-+.|++|+|+++. +
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 344455556677777777665432 233344456677777777666532 23344555567777776542 2
Q ss_pred c-----cCCccCCCCCCCCEEEeccC
Q 046284 240 T-----ELPSSFENLPGLEELFVEDC 260 (618)
Q Consensus 240 ~-----~lp~~l~~l~~L~~L~L~~~ 260 (618)
. .+...+..-+.|+.|+++.+
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 12233445566777777655
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.68 E-value=0.015 Score=49.64 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=39.3
Q ss_pred EEEeCCCCCC--ccCCCCCCCCceEEEccCCCceecc-ccccccccCcEEeccCCC
Q 046284 71 YLHWDTYPLR--TLPSNFKPKNLVALNLSCSKVEQLW-EGEKNFKYLSALSFEGCK 123 (618)
Q Consensus 71 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~Ls~~~ 123 (618)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++ ..+..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6777777777 777653 346888888888888887 446778888888888876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.11 E-value=48 Score=26.07 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=33.1
Q ss_pred cccccCchhhccCccceEEEEeCCCCCCCCccccccccceEEcCCCCcCCCcCceEEEeCCC
Q 046284 16 KRINLDPGAFTNMSNMRLLKFYGIEKLPSMSIEEHLSYSKVQLPNGLDYLPKKLRYLHWDTY 77 (618)
Q Consensus 16 ~~~~l~~~~f~~l~~Lr~L~l~~n~~l~~~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~ 77 (618)
....|...+|.+|++|+.+.|-.+- ..+.+..+.-..+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v---------------~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI---------------GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS---------------SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch---------------heEcHHHHhccCCccEEEEcCC
Confidence 4678889999999999999886631 3444444444457777777653
Done!