BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046285
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LV9|A Chain A, Crystal Structure Of Cbs Domain Of A Putative Transporter
From Clostridium Difficile 630
Length = 148
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 144 SGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAI 179
+G I+E EQ +++N+ E ++ +RE+ P D V I
Sbjct: 3 AGLIDESEQRLVDNIFEFEEKKIREIXVPRTDXVCI 38
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 126 EPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATL 185
EP DEL ++R + + I+E+ +D +E V +I D VR++ P + + + TL
Sbjct: 30 EPK-NRDELLALIRDSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTL 88
>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From
Shewanella Oneidensis Mr-1
Length = 172
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 123 GRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 180
G + VT+++++ L+ +G IE E ++NV + + + + P D+V +D
Sbjct: 1 GHLDDNVTQEDIQAXLQEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLD 58
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 17 LRTDVTRFLTTILIGTTVVNIGATALVTEAA--TAIFGEAGVSAA 59
++T++ RF+ +LIG NI A L E + F ++G+ +A
Sbjct: 69 IKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFAKSGIESA 113
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
Length = 168
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 17 LRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAAT 60
L + R L+ I++G + I T++V FG +G+S+ T
Sbjct: 16 LSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSCT 59
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 116 LKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVD 175
+ LG R V D + L+G E A+ E + D ++ IK+ + V PLVD
Sbjct: 461 VTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDADTPSPMIAIKEDQITRV--PLVD 518
Query: 176 VVAI 179
V +
Sbjct: 519 AVEL 522
>pdb|3C6A|A Chain A, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
pdb|3C6H|A Chain A, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
pdb|3C6H|B Chain B, Crystal Structure Of The Rb49 Gp17 Nuclease Domain
Length = 232
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 65 VAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILY 102
+ I+ +TE K +AV+H+ F++ + + L++Y
Sbjct: 78 LQIIDITEFPYKQVAVYHSNTTSHFILPDIVFKYLMMY 115
>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3UDC|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3UDC|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3UDC|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3UDC|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3UDC|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3UDC|G Chain G, Crystal Structure Of A Membrane Protein
Length = 285
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 11 AGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIF 51
A + K+ D+T L IG+ + GA LV + + F
Sbjct: 82 ASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFF 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,098,641
Number of Sequences: 62578
Number of extensions: 174433
Number of successful extensions: 626
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 14
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)