Query 046285
Match_columns 198
No_of_seqs 117 out of 1312
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 3.4E-44 7.4E-49 314.5 25.1 196 1-198 23-221 (413)
2 TIGR03520 GldE gliding motilit 100.0 6.1E-43 1.3E-47 306.4 25.0 194 1-198 26-225 (408)
3 COG4536 CorB Putative Mg2+ and 100.0 3.5E-44 7.5E-49 301.6 16.4 198 1-198 34-234 (423)
4 COG1253 TlyC Hemolysins and re 100.0 1E-37 2.2E-42 275.2 21.9 196 2-198 36-240 (429)
5 PF01595 DUF21: Domain of unkn 100.0 1.6E-29 3.6E-34 198.6 19.0 150 2-151 32-183 (183)
6 PRK15094 magnesium/cobalt effl 99.5 3.4E-14 7.4E-19 119.8 9.4 78 116-198 24-101 (292)
7 COG4535 CorC Putative Mg2+ and 99.4 3.3E-13 7.2E-18 108.5 6.4 69 130-198 33-101 (293)
8 KOG2118 Predicted membrane pro 99.4 1.3E-14 2.8E-19 129.9 -4.2 174 12-198 61-239 (498)
9 TIGR00400 mgtE Mg2+ transporte 97.8 5.5E-05 1.2E-09 67.6 6.2 66 127-194 88-159 (449)
10 TIGR01302 IMP_dehydrog inosine 97.1 0.0013 2.8E-08 59.0 6.2 66 126-198 42-112 (450)
11 COG3448 CBS-domain-containing 95.7 0.3 6.5E-06 41.5 11.8 68 128-197 202-276 (382)
12 PF00571 CBS: CBS domain CBS d 95.3 0.012 2.6E-07 36.5 2.1 31 166-198 1-31 (57)
13 PRK05567 inosine 5'-monophosph 94.8 0.096 2.1E-06 47.4 7.0 66 126-198 49-119 (486)
14 COG4109 Predicted transcriptio 92.0 0.12 2.6E-06 44.7 2.6 47 152-198 171-222 (432)
15 cd04597 CBS_pair_DRTGG_assoc2 85.8 1.2 2.7E-05 31.5 3.8 32 164-197 58-89 (113)
16 cd04604 CBS_pair_KpsF_GutQ_ass 85.0 1.2 2.7E-05 30.7 3.4 37 159-197 54-90 (114)
17 cd04801 CBS_pair_M50_like This 83.3 1.5 3.2E-05 30.5 3.2 35 163-197 56-90 (114)
18 COG3620 Predicted transcriptio 83.2 3.1 6.8E-05 32.3 5.1 55 142-198 38-97 (187)
19 COG2239 MgtE Mg/Co/Ni transpor 82.4 4.4 9.5E-05 36.5 6.5 49 146-196 114-162 (451)
20 PRK10892 D-arabinose 5-phospha 82.2 1.2 2.6E-05 37.9 2.8 36 162-197 200-235 (326)
21 PF01036 Bac_rhodopsin: Bacter 81.5 26 0.00056 28.1 12.1 35 74-109 146-181 (222)
22 PRK07107 inosine 5-monophospha 79.8 1.9 4E-05 39.4 3.3 37 161-197 158-194 (502)
23 cd04623 CBS_pair_10 The CBS do 79.1 4 8.6E-05 27.9 4.2 34 162-197 57-90 (113)
24 cd04592 CBS_pair_EriC_assoc_eu 78.4 2.5 5.4E-05 31.1 3.1 40 159-198 64-110 (133)
25 cd07178 terB_like_YebE telluri 77.8 3.6 7.8E-05 28.8 3.6 27 134-160 3-29 (95)
26 cd04625 CBS_pair_12 The CBS do 76.3 5 0.00011 27.5 4.1 33 163-197 57-89 (112)
27 PLN02274 inosine-5'-monophosph 76.3 2.6 5.5E-05 38.6 3.1 36 162-197 161-196 (505)
28 cd04617 CBS_pair_4 The CBS dom 76.0 3.3 7.2E-05 29.0 3.1 37 161-197 55-91 (118)
29 cd04603 CBS_pair_KefB_assoc Th 75.5 3.5 7.6E-05 28.6 3.1 34 163-198 55-88 (111)
30 PTZ00314 inosine-5'-monophosph 75.2 2.7 5.8E-05 38.3 3.0 36 162-197 157-192 (495)
31 TIGR01137 cysta_beta cystathio 75.1 2.8 6.1E-05 37.3 3.1 40 155-198 328-367 (454)
32 PRK10892 D-arabinose 5-phospha 75.1 2.6 5.7E-05 35.8 2.8 35 161-197 266-300 (326)
33 cd04584 CBS_pair_ACT_assoc Thi 74.0 3.2 7E-05 28.9 2.6 36 160-197 63-98 (121)
34 cd04585 CBS_pair_ACT_assoc2 Th 73.5 3.7 8.1E-05 28.4 2.9 36 161-198 64-99 (122)
35 cd04802 CBS_pair_3 The CBS dom 72.8 4.5 9.8E-05 27.7 3.1 34 162-197 56-89 (112)
36 PRK11543 gutQ D-arabinose 5-ph 71.3 2.7 5.8E-05 35.6 1.9 35 163-197 196-230 (321)
37 cd04621 CBS_pair_8 The CBS dom 69.7 5.3 0.00011 29.1 3.0 34 162-197 79-112 (135)
38 cd04589 CBS_pair_CAP-ED_DUF294 68.4 5.5 0.00012 27.3 2.7 34 162-197 55-88 (111)
39 PF04391 DUF533: Protein of un 67.4 7.3 0.00016 30.9 3.5 28 134-161 83-110 (188)
40 cd04613 CBS_pair_SpoIVFB_EriC_ 67.3 7 0.00015 26.6 3.1 33 163-197 57-89 (114)
41 PF09999 DUF2240: Uncharacteri 67.1 3.1 6.8E-05 31.6 1.3 68 127-197 32-100 (144)
42 cd04636 CBS_pair_23 The CBS do 65.3 6.8 0.00015 28.0 2.8 34 162-197 76-109 (132)
43 cd04594 CBS_pair_EriC_assoc_ar 64.5 10 0.00022 25.8 3.4 32 164-197 50-81 (104)
44 cd04599 CBS_pair_GGDEF_assoc2 64.3 7.7 0.00017 26.1 2.8 34 163-198 50-83 (105)
45 cd04610 CBS_pair_ParBc_assoc T 64.2 7.9 0.00017 26.1 2.9 33 163-197 51-83 (107)
46 cd04633 CBS_pair_20 The CBS do 64.2 7.1 0.00015 27.1 2.7 35 161-197 64-98 (121)
47 cd04630 CBS_pair_17 The CBS do 64.1 8 0.00017 26.7 2.9 34 162-197 58-91 (114)
48 cd04615 CBS_pair_2 The CBS dom 63.6 8.7 0.00019 26.3 3.0 35 161-197 55-89 (113)
49 cd04582 CBS_pair_ABC_OpuCA_ass 63.1 13 0.00028 25.0 3.8 32 165-198 52-83 (106)
50 cd04622 CBS_pair_9 The CBS dom 63.1 8.6 0.00019 26.2 2.9 34 162-197 56-89 (113)
51 PF08899 DUF1844: Domain of un 62.8 44 0.00094 22.4 6.0 26 133-159 42-67 (74)
52 cd04640 CBS_pair_27 The CBS do 62.5 5 0.00011 28.5 1.6 36 162-197 62-101 (126)
53 PF03563 Bunya_G2: Bunyavirus 61.7 42 0.0009 28.1 6.9 45 59-117 191-235 (285)
54 cd04586 CBS_pair_BON_assoc Thi 61.4 11 0.00024 26.9 3.3 36 160-197 77-112 (135)
55 PRK01862 putative voltage-gate 61.3 5.7 0.00012 36.7 2.2 35 161-197 444-478 (574)
56 cd04800 CBS_pair_CAP-ED_DUF294 60.2 10 0.00022 25.8 2.9 33 163-197 56-88 (111)
57 cd04607 CBS_pair_NTP_transfera 59.6 11 0.00024 25.8 3.0 33 163-197 57-89 (113)
58 cd04595 CBS_pair_DHH_polyA_Pol 59.5 11 0.00023 25.7 2.9 34 162-197 54-87 (110)
59 cd04803 CBS_pair_15 The CBS do 58.7 11 0.00025 26.1 2.9 35 161-197 64-98 (122)
60 cd04601 CBS_pair_IMPDH This cd 58.0 12 0.00027 25.2 3.0 34 163-198 53-87 (110)
61 PRK11573 hypothetical protein; 58.0 1.4E+02 0.003 26.6 12.5 22 175-196 263-284 (413)
62 COG2524 Predicted transcriptio 57.7 7.5 0.00016 32.5 2.0 32 163-196 233-264 (294)
63 PRK09458 pspB phage shock prot 56.9 57 0.0012 21.9 7.5 61 89-162 5-68 (75)
64 PF14163 SieB: Superinfection 56.7 82 0.0018 23.6 8.6 20 147-166 79-98 (151)
65 cd04587 CBS_pair_CAP-ED_DUF294 56.6 15 0.00032 25.0 3.2 33 163-197 57-89 (113)
66 cd04643 CBS_pair_30 The CBS do 56.5 9.3 0.0002 26.2 2.1 33 162-196 61-93 (116)
67 cd04619 CBS_pair_6 The CBS dom 56.4 12 0.00027 25.8 2.8 34 162-197 57-90 (114)
68 cd04635 CBS_pair_22 The CBS do 56.3 12 0.00027 25.9 2.8 34 162-197 65-98 (122)
69 COG0517 FOG: CBS domain [Gener 56.0 26 0.00057 23.8 4.4 44 152-197 48-94 (117)
70 cd04632 CBS_pair_19 The CBS do 56.0 9.9 0.00021 26.8 2.2 35 161-197 68-102 (128)
71 cd04596 CBS_pair_DRTGG_assoc T 55.9 13 0.00028 25.3 2.8 34 162-197 51-84 (108)
72 COG3462 Predicted membrane pro 55.9 62 0.0014 23.4 6.1 23 135-157 91-113 (117)
73 cd04600 CBS_pair_HPP_assoc Thi 55.6 13 0.00029 25.8 2.9 34 161-196 66-99 (124)
74 PRK14869 putative manganese-de 55.2 12 0.00026 34.3 3.1 36 162-198 244-279 (546)
75 cd04631 CBS_pair_18 The CBS do 55.1 11 0.00024 26.2 2.4 34 162-197 68-101 (125)
76 cd04626 CBS_pair_13 The CBS do 54.7 14 0.00031 25.1 2.9 33 163-197 56-88 (111)
77 cd04639 CBS_pair_26 The CBS do 54.6 13 0.00029 25.2 2.7 33 163-197 55-87 (111)
78 cd04634 CBS_pair_21 The CBS do 54.0 12 0.00026 27.2 2.5 34 162-197 87-120 (143)
79 cd04629 CBS_pair_16 The CBS do 53.6 15 0.00032 25.1 2.8 34 162-197 58-91 (114)
80 cd04602 CBS_pair_IMPDH_2 This 53.4 17 0.00037 25.0 3.1 35 163-197 56-90 (114)
81 TIGR00400 mgtE Mg2+ transporte 53.0 12 0.00027 33.5 2.8 34 162-197 193-226 (449)
82 PF11305 DUF3107: Protein of u 52.6 23 0.0005 23.7 3.4 48 127-184 18-65 (74)
83 cd04611 CBS_pair_PAS_GGDEF_DUF 51.9 17 0.00036 24.6 2.8 34 162-197 54-87 (111)
84 cd04598 CBS_pair_GGDEF_assoc T 51.5 17 0.00036 25.1 2.8 33 162-196 59-91 (119)
85 PF11742 DUF3302: Protein of u 50.3 78 0.0017 21.4 7.8 43 67-109 19-64 (78)
86 PRK11543 gutQ D-arabinose 5-ph 50.2 28 0.00061 29.3 4.4 34 162-197 261-294 (321)
87 cd04593 CBS_pair_EriC_assoc_ba 49.4 21 0.00045 24.5 3.0 33 163-197 57-89 (115)
88 TIGR00393 kpsF KpsF/GutQ famil 49.3 11 0.00023 30.8 1.7 33 164-197 155-187 (268)
89 cd04583 CBS_pair_ABC_OpuCA_ass 48.8 22 0.00047 23.9 3.0 31 164-196 54-84 (109)
90 TIGR00393 kpsF KpsF/GutQ famil 47.6 19 0.00041 29.4 2.9 34 162-197 218-251 (268)
91 PRK01862 putative voltage-gate 46.6 29 0.00062 32.1 4.2 33 163-197 511-543 (574)
92 PRK14869 putative manganese-de 46.4 16 0.00036 33.4 2.6 34 163-198 67-100 (546)
93 TIGR01302 IMP_dehydrog inosine 46.2 19 0.00041 32.4 2.9 35 162-197 141-175 (450)
94 PF11712 Vma12: Endoplasmic re 46.1 1.2E+02 0.0027 22.5 7.1 44 31-74 83-129 (142)
95 PF01595 DUF21: Domain of unkn 45.3 1.3E+02 0.0029 22.7 13.4 41 79-119 103-147 (183)
96 PF06667 PspB: Phage shock pro 45.0 93 0.002 20.8 7.3 64 89-162 5-68 (75)
97 TIGR01303 IMP_DH_rel_1 IMP deh 43.7 22 0.00047 32.3 2.9 33 163-197 145-177 (475)
98 COG2979 Uncharacterized protei 43.1 29 0.00062 28.1 3.1 29 134-162 114-142 (225)
99 PTZ00386 formyl tetrahydrofola 40.8 13 0.00028 34.6 1.0 47 119-171 196-242 (625)
100 cd04637 CBS_pair_24 The CBS do 40.8 25 0.00053 24.4 2.3 33 163-197 66-98 (122)
101 COG2524 Predicted transcriptio 40.5 19 0.00042 30.1 1.8 41 155-197 163-203 (294)
102 PF14044 NETI: NETI protein 40.0 39 0.00084 21.4 2.7 22 177-198 2-23 (57)
103 cd04612 CBS_pair_SpoIVFB_EriC_ 40.0 42 0.00091 22.5 3.4 32 164-197 56-87 (111)
104 PF02637 GatB_Yqey: GatB domai 39.9 89 0.0019 23.3 5.4 67 126-195 37-104 (148)
105 PF05848 CtsR: Firmicute trans 39.8 59 0.0013 24.9 4.3 34 127-160 91-124 (152)
106 PRK07807 inosine 5-monophospha 39.6 28 0.00061 31.6 3.0 33 163-197 147-179 (479)
107 cd04620 CBS_pair_7 The CBS dom 39.5 35 0.00076 23.2 2.9 34 162-197 56-91 (115)
108 cd04605 CBS_pair_MET2_assoc Th 39.4 46 0.001 22.3 3.5 30 165-196 56-85 (110)
109 cd04606 CBS_pair_Mg_transporte 39.3 36 0.00078 23.0 2.9 32 163-196 52-83 (109)
110 smart00116 CBS Domain in cysta 38.5 48 0.001 17.9 3.0 22 176-197 2-23 (49)
111 cd04624 CBS_pair_11 The CBS do 37.9 37 0.00079 23.0 2.8 33 163-197 56-88 (112)
112 PF11151 DUF2929: Protein of u 37.1 1E+02 0.0023 19.3 4.5 21 57-77 35-55 (57)
113 cd07313 terB_like_2 tellurium 35.7 59 0.0013 22.3 3.6 27 134-160 76-102 (104)
114 COG0099 RpsM Ribosomal protein 34.5 62 0.0013 23.8 3.5 52 111-162 29-85 (121)
115 KOG2550 IMP dehydrogenase/GMP 34.5 29 0.00062 31.1 2.1 45 145-195 156-200 (503)
116 cd04638 CBS_pair_25 The CBS do 34.1 45 0.00097 22.3 2.7 32 164-197 52-83 (106)
117 PF12520 DUF3723: Protein of u 33.5 96 0.0021 28.5 5.4 90 73-162 167-258 (511)
118 PRK05567 inosine 5'-monophosph 33.4 42 0.00091 30.4 3.1 34 163-197 146-179 (486)
119 cd07316 terB_like_DjlA N-termi 33.3 70 0.0015 21.9 3.6 27 134-160 77-103 (106)
120 cd07311 terB_like_1 tellurium 33.2 84 0.0018 23.9 4.2 51 134-191 27-80 (150)
121 PF06210 DUF1003: Protein of u 32.9 1.8E+02 0.004 20.8 5.8 55 52-108 2-56 (108)
122 TIGR01565 homeo_ZF_HD homeobox 32.8 1.3E+02 0.0028 19.0 4.7 41 127-167 6-50 (58)
123 COG3448 CBS-domain-containing 32.1 60 0.0013 28.0 3.5 36 160-197 311-346 (382)
124 cd04627 CBS_pair_14 The CBS do 32.0 65 0.0014 22.3 3.3 29 167-197 71-99 (123)
125 PF02673 BacA: Bacitracin resi 31.0 3.1E+02 0.0067 22.8 7.8 88 20-108 76-166 (259)
126 COG5524 Bacteriorhodopsin [Gen 30.8 3.3E+02 0.0072 23.1 9.4 31 79-109 182-214 (285)
127 PRK07807 inosine 5-monophospha 30.0 52 0.0011 29.9 3.1 35 162-198 87-121 (479)
128 cd04588 CBS_pair_CAP-ED_DUF294 29.3 62 0.0013 21.7 2.8 32 164-197 55-86 (110)
129 PTZ00134 40S ribosomal protein 29.0 1.2E+02 0.0027 23.2 4.5 32 111-142 42-74 (154)
130 cd04608 CBS_pair_PALP_assoc Th 28.9 64 0.0014 22.7 2.9 30 162-193 57-86 (124)
131 cd04590 CBS_pair_CorC_HlyC_ass 28.2 52 0.0011 22.1 2.2 31 164-197 57-87 (111)
132 cd04609 CBS_pair_PALP_assoc2 T 27.7 56 0.0012 21.7 2.3 30 163-194 56-85 (110)
133 cd02205 CBS_pair The CBS domai 27.2 1.1E+02 0.0024 19.8 3.8 30 166-197 60-89 (113)
134 PF11744 ALMT: Aluminium activ 27.0 4.6E+02 0.0099 23.4 8.6 27 18-44 5-31 (406)
135 TIGR03629 arch_S13P archaeal r 26.6 1.7E+02 0.0036 22.2 4.8 30 111-140 33-63 (144)
136 smart00845 GatB_Yqey GatB doma 26.5 2.5E+02 0.0054 20.9 5.9 63 127-192 37-100 (147)
137 cd04642 CBS_pair_29 The CBS do 26.4 84 0.0018 21.9 3.1 25 172-196 77-101 (126)
138 PRK00182 tatB sec-independent 26.1 56 0.0012 25.3 2.2 28 51-78 2-30 (160)
139 KOG0474 Cl- channel CLC-7 and 26.0 54 0.0012 31.0 2.4 35 161-197 579-613 (762)
140 PF08672 APC2: Anaphase promot 25.6 74 0.0016 20.2 2.3 32 116-148 21-52 (60)
141 PLN02274 inosine-5'-monophosph 25.4 1.3E+02 0.0029 27.6 4.8 63 127-198 63-132 (505)
142 TIGR03520 GldE gliding motilit 25.0 4.8E+02 0.01 23.0 13.0 31 163-196 254-284 (408)
143 PLN02759 Formate--tetrahydrofo 24.3 18 0.0004 33.8 -0.9 47 119-171 201-247 (637)
144 cd07177 terB_like tellurium re 24.0 1.3E+02 0.0027 20.1 3.6 26 134-159 76-101 (104)
145 PF04545 Sigma70_r4: Sigma-70, 23.9 66 0.0014 19.0 1.8 23 146-169 4-26 (50)
146 PF01350 Flavi_NS4A: Flaviviru 23.4 3.3E+02 0.0073 20.6 6.8 73 6-80 31-103 (144)
147 PF00046 Homeobox: Homeobox do 23.0 1.6E+02 0.0034 17.6 3.5 39 128-166 6-44 (57)
148 PHA03231 glycoprotein BALF4; P 23.0 3.3E+02 0.0071 26.8 7.0 17 127-143 766-782 (829)
149 PRK10128 2-keto-3-deoxy-L-rham 22.8 2.3E+02 0.0051 23.6 5.5 60 127-197 50-114 (267)
150 COG3838 VirB2 Type IV secretor 22.7 3E+02 0.0065 19.8 6.7 10 62-71 63-72 (108)
151 cd07176 terB tellurite resista 21.8 1.4E+02 0.0031 20.4 3.5 27 134-160 81-107 (111)
152 CHL00137 rps13 ribosomal prote 21.3 2.5E+02 0.0053 20.6 4.7 32 111-142 29-61 (122)
153 PF07128 DUF1380: Protein of u 20.5 1.7E+02 0.0038 22.0 3.8 41 128-172 42-90 (139)
154 PTZ00314 inosine-5'-monophosph 20.4 1.6E+02 0.0035 26.9 4.4 63 127-198 59-128 (495)
155 PTZ00370 STEVOR; Provisional 20.3 1E+02 0.0022 26.2 2.8 25 78-102 251-275 (296)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=314.51 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=181.9
Q ss_pred ChhHhhccC-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 046285 1 VRELAEKED-EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIA 79 (198)
Q Consensus 1 ~~~la~~~~-~a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~l~lifgEilPk~la 79 (198)
+++++++|+ +|+.++++++||+++++|+|+|||++|++++++++.++..+|+..++.++++++|+++++|||++||++|
T Consensus 23 l~~l~~~g~~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~~~~ia~~i~t~l~lvfGEiiPK~la 102 (413)
T PRK11573 23 LRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIA 102 (413)
T ss_pred HHHHHHcCChhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 467888887 4778999999999999999999999999999988877777777777888889999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCC--CCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 046285 80 VHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRS--EPYVTEDELKLMLRGAELSGAIEEEEQDMIEN 157 (198)
Q Consensus 80 ~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~--~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~ 157 (198)
.+||++++++.++++++++++++|++|+++++++.++|++|.++.. .+.+|+||++.+++.+++ .++++|++||+|
T Consensus 103 ~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~~~~--~l~~~e~~mi~~ 180 (413)
T PRK11573 103 ALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS--QISRRNQDMLLS 180 (413)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHhh--hcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987642 356899999999998865 599999999999
Q ss_pred hhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 158 VLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 158 v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+|+|+|++|+||||||+||++++.+++++|+++.+.++|||
T Consensus 181 vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~S 221 (413)
T PRK11573 181 VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHG 221 (413)
T ss_pred HhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999998
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=6.1e-43 Score=306.42 Aligned_cols=194 Identities=23% Similarity=0.363 Sum_probs=178.2
Q ss_pred ChhHhhccC-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHhhhh
Q 046285 1 VRELAEKED-EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGE-----AGVSAATGVMTVAILLLTEIT 74 (198)
Q Consensus 1 ~~~la~~~~-~a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~t~l~lifgEil 74 (198)
+++++++|+ ++++++++++||+++++|+|+|||++|++++++++.++..+|+. .++.++++++|+++++|||++
T Consensus 26 l~~l~~~~~~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lvfgEii 105 (408)
T TIGR03520 26 LNDEEEDNSKKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEIL 105 (408)
T ss_pred HHHHHHcCCHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 367888887 47789999999999999999999999999999888877777753 234567778899999999999
Q ss_pred hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHH
Q 046285 75 PKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDM 154 (198)
Q Consensus 75 Pk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E~~~ 154 (198)
||++|.+||++++++.++|++++++++||++|+++++++.+.|++|.++ +.+|+||++.+++.++++| ++++|++|
T Consensus 106 PK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~---~~~t~eEl~~lv~~~~~~g-~~~~E~~~ 181 (408)
T TIGR03520 106 PKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK---SNISVDQLSQALELTDEED-TTKEEQKI 181 (408)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHhHhhcC-CChHHHHH
Confidence 9999999999999999999999999999999999999999999998764 3479999999999999988 68999999
Q ss_pred HHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 155 IENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 155 i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
|+|+|+|+|++|+||||||+|+++++.+++++|+++.+.++|||
T Consensus 182 i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~s 225 (408)
T TIGR03520 182 LQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYS 225 (408)
T ss_pred HHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999998
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=301.57 Aligned_cols=198 Identities=28% Similarity=0.414 Sum_probs=189.9
Q ss_pred ChhHhhccCh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 046285 1 VRELAEKEDE-AGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIA 79 (198)
Q Consensus 1 ~~~la~~~~~-a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~l~lifgEilPk~la 79 (198)
++.||++|++ |+++.|++++|+++++++++|||++|++++++++.++..+||..|+.+|++++|+++++|+|++||++|
T Consensus 34 lr~la~~G~~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~A 113 (423)
T COG4536 34 LRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIA 113 (423)
T ss_pred HHHHHHccchhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHh
Confidence 4678999985 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCC--CCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 046285 80 VHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRS--EPYVTEDELKLMLRGAELSGAIEEEEQDMIEN 157 (198)
Q Consensus 80 ~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~--~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~ 157 (198)
+.|||++++..++++.++.++|+|++|+++++++.++|+||++... ++..|.||++.++++++.+|...+++++|+-|
T Consensus 114 a~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~~~~~rdmL~g 193 (423)
T COG4536 114 ALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSVNKIDRDMLLG 193 (423)
T ss_pred hhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHHhhcccccccccHHHHhc
Confidence 9999999999999999999999999999999999999999998764 56689999999999999999988899999999
Q ss_pred hhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 158 VLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 158 v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++++++.+|+||||||++|.+++.|++++++++.+..+.|+
T Consensus 194 vLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~Ht 234 (423)
T COG4536 194 VLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHT 234 (423)
T ss_pred ccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999985
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=1e-37 Score=275.21 Aligned_cols=196 Identities=30% Similarity=0.462 Sum_probs=174.7
Q ss_pred hhHhhccCh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--H----HHHHHHHHHHHHHHhhhh
Q 046285 2 RELAEKEDE-AGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAG--V----SAATGVMTVAILLLTEIT 74 (198)
Q Consensus 2 ~~la~~~~~-a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~~~--~----~~~~~i~t~l~lifgEil 74 (198)
++++++|++ +..+.++.++|+++++++|+|+|++++..++++...+...+..+. . ...+++.|+++++|||++
T Consensus 36 ~~~~~~g~~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~ 115 (429)
T COG1253 36 EQLAEEGNKRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELV 115 (429)
T ss_pred HHHHHccCHhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechh
Confidence 567777764 678999999999999999999999999999998776654433211 1 222668899999999999
Q ss_pred hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCC--CCCCCHHHHHHHHHHHHhCCCCcHHHH
Q 046285 75 PKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRS--EPYVTEDELKLMLRGAELSGAIEEEEQ 152 (198)
Q Consensus 75 Pk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~--~~~~s~eel~~lv~~~~~~g~l~~~E~ 152 (198)
||++|+++|++++++.++++++++++++|++|+++.+++.++|++|.++.+ +...++++.+ +++.+.++|.++++|+
T Consensus 116 PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~E~ 194 (429)
T COG1253 116 PKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LVSESAEEGVLEEEER 194 (429)
T ss_pred hhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-HHHhHHhcCCcCHHHH
Confidence 999999999999999999999999999999999999999999999988642 3456777777 9999999999999999
Q ss_pred HHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 153 DMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 153 ~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+||+|+|+|++++|+|+||||+||++++.+++.+++.+.+.++|||
T Consensus 195 ~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~S 240 (429)
T COG1253 195 EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHS 240 (429)
T ss_pred HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999998
No 5
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.97 E-value=1.6e-29 Score=198.58 Aligned_cols=150 Identities=35% Similarity=0.517 Sum_probs=139.1
Q ss_pred hhHhhccC-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhhhhHHHH
Q 046285 2 RELAEKED-EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGE-AGVSAATGVMTVAILLLTEITPKSIA 79 (198)
Q Consensus 2 ~~la~~~~-~a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~t~l~lifgEilPk~la 79 (198)
++++++|+ +++++.++++||+++++|+++||+++|++.+++++.++.+.++. .+..++++++++++++|||++||.+|
T Consensus 32 ~~~~~~~~~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~ 111 (183)
T PF01595_consen 32 EELAEEGDKRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIFGEILPKALA 111 (183)
T ss_pred HHHHHcCCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776 57889999999999999999999999999999988888888887 77888899999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHH
Q 046285 80 VHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEE 151 (198)
Q Consensus 80 ~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E 151 (198)
.+||++++++.+|++++++++++|+++++.++++.+.|.+|.+.++++.+|+||+++++++++++|.++++|
T Consensus 112 ~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~~~~e~G~i~~~E 183 (183)
T PF01595_consen 112 RRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEELRSLVEEGEEEGVIEEEE 183 (183)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHhHHHCCCCCCCC
Confidence 999999999999999999999999999999999999999998874467899999999999999999999876
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.53 E-value=3.4e-14 Score=119.84 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=72.1
Q ss_pred HHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhC
Q 046285 116 LKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH 195 (198)
Q Consensus 116 ~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~ 195 (198)
.+++|.++ .|+|||+.+++++.++|.++++|++||+|+|+|++++|+|||+||+++++++.+++++++.+.+.++
T Consensus 24 ~~~~~~~~-----~t~eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~ 98 (292)
T PRK15094 24 SQLFHGEP-----KNRDELLALIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIES 98 (292)
T ss_pred HHHcCCCC-----CCHHHHHHHHHhHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhc
Confidence 33555553 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 046285 196 QYS 198 (198)
Q Consensus 196 ~~S 198 (198)
+||
T Consensus 99 ~~s 101 (292)
T PRK15094 99 AHS 101 (292)
T ss_pred CCc
Confidence 997
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.3e-13 Score=108.47 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 130 TEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 130 s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++|+..+++.++..+.++++.+.|++++++++|.+|||||+||+||+.++.+.++++.++.+.+++||
T Consensus 33 nr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHS 101 (293)
T COG4535 33 NREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHS 101 (293)
T ss_pred CHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999998
No 8
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.38 E-value=1.3e-14 Score=129.95 Aligned_cols=174 Identities=25% Similarity=0.342 Sum_probs=135.5
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHhhchHHHHHHH
Q 046285 12 GVFKMLRTDVTRFLTTILIGTTVVNIG-ATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFV 90 (198)
Q Consensus 12 ~~~~~l~~~~~~~l~tilig~tl~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~t~l~lifgEilPk~la~~~p~~i~~~~ 90 (198)
+.+....++.+.++.+.++||.+++-+ +.... .... .+ +.++.+.+..++.|||++|++++.++...+....
T Consensus 61 a~i~~~~k~~~~lL~tlll~n~~~~e~~L~i~~----~~~~--~~-~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~ 133 (498)
T KOG2118|consen 61 AAIFPVRKNLHDLLVTLLLCNSIATEAVLPFFL----DAES--GE-SGALRISVTEILIFGEIIPQSVCVKYGLAVGANL 133 (498)
T ss_pred hhhcccccccceeeehheehhhhccccccceee----cccc--cc-cceEecceeeeeecccccchHHHhhhcccccccc
Confidence 345556778889999999999887766 22221 1111 12 4567778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHHHHHHHHh---CCCCcHHHHHHHHHhhccCCcccc
Q 046285 91 VRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAEL---SGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 91 a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~lv~~~~~---~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
.++.+++.++++|+.|+++++ ...+|..-. ......++..++..... .|.+..+|..+|.+++++.++.++
T Consensus 134 ~~~~~i~~~l~~PI~~p~~~~----d~~lg~~~~--~~~~~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~ 207 (498)
T KOG2118|consen 134 VPLVRILSFLCLPIAYPFSKL----DTALGLNLG--EFLKRASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVG 207 (498)
T ss_pred eehHHHHHHHhhhhheehhhh----hhhhccccc--cchhhHHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHH
Confidence 999999999999999999876 223343321 12234455555543322 267899999999999999999999
Q ss_pred cccccccceEEEeCCCCHH-HHHHHHHhCCCC
Q 046285 168 EVMTPLVDVVAIDGSATLI-DFHNLWLTHQYS 198 (198)
Q Consensus 168 eiM~PR~~i~~l~~~~~~~-e~~~~~~~~~~S 198 (198)
|||||-.|+++++.+..++ +....+.++|||
T Consensus 208 evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~s 239 (498)
T KOG2118|consen 208 EVMTPIEDVFALDANTKLDRETVGEIVKHGYS 239 (498)
T ss_pred HhccchhhheeeccccccchHHHhhHhhcCcc
Confidence 9999999999999999997 888999999997
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.75 E-value=5.5e-05 Score=67.61 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHhC------CCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHh
Q 046285 127 PYVTEDELKLMLRGAELS------GAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLT 194 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~------g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~ 194 (198)
..++.||+.+++++..++ +.++++|++++++++++++.+|+++|+ +++.+++.+++++++++.+++
T Consensus 88 ~~l~~dd~~~ll~~l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~ 159 (449)
T TIGR00400 88 NEMNLDDVIDLLEEVPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRR 159 (449)
T ss_pred HcCChhHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHh
Confidence 357899999999988777 489999999999999999999999998 589999999999999999975
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.06 E-value=0.0013 Score=58.97 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcH-----HHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 126 EPYVTEDELKLMLRGAELSGAIEE-----EEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 126 ~~~~s~eel~~lv~~~~~~g~l~~-----~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
-..+|++|+..++..+...|.+++ +|.+++++++++++..++ +++.++.+++++++++.+.+++||
T Consensus 42 mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~-------~~vtl~~~~tv~eal~~m~~~~~s 112 (450)
T TIGR01302 42 MDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKRAENGIIS-------DPVTISPETTVADVLELMERKGIS 112 (450)
T ss_pred CCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhccccCceec-------CceEeCCCCCHHHHHHHHHHcCCC
Confidence 457899999999988888999984 899999999988876444 678999999999999999998875
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=95.66 E-value=0.3 Score=41.46 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHH-------hhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIEN-------VLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~-------v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.++.+|+...++.-.|.=+++.++-+-+-+ .=.+.+.+..|||.+ |++.++.+++++++++++.+++.
T Consensus 202 gfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~i 276 (382)
T COG3448 202 GFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRI 276 (382)
T ss_pred CCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCc
Confidence 478889998887766666777766544332 235788999999975 89999999999999999999875
No 12
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=95.34 E-value=0.012 Score=36.51 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=28.5
Q ss_pred cccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 166 VREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 166 v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
|+|+|+| +...++.++++.++.+.+.+++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~ 31 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGIS 31 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSS
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCc
Confidence 5789998 999999999999999999999874
No 13
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.80 E-value=0.096 Score=47.43 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCc-----HHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 126 EPYVTEDELKLMLRGAELSGAIE-----EEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 126 ~~~~s~eel~~lv~~~~~~g~l~-----~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
...+|++|+...+..+..-|.+. ++++++++++.++++ +|+ .++..++.+++++++++.+.+++|+
T Consensus 49 m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk~~~d-----im~--~~~v~i~~~~tv~ea~~~m~~~~~~ 119 (486)
T PRK05567 49 MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRSES-----GVV--TDPVTVTPDTTLAEALALMARYGIS 119 (486)
T ss_pred CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhhhhhh-----ccc--CCCeEeCCCCCHHHHHHHHHHhCCC
Confidence 35789999999998877778887 588999999988665 554 6788899999999999999998875
No 14
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=91.97 E-value=0.12 Score=44.71 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=39.6
Q ss_pred HHHHHHhhc-----cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 152 QDMIENVLE-----IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 152 ~~~i~~v~~-----~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..||..++. =+=.+|.|||+|.++-..+..+++++++.++..++|||
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s 222 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS 222 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence 455555543 34468999999999999999999999999999999997
No 15
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=85.78 E-value=1.2 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=28.0
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+|+|+|.+ ++..++.++++.++++.+.++++
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~ 89 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNI 89 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCC
Confidence 679999976 67789999999999999988775
No 16
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=84.97 E-value=1.2 Score=30.67 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=29.6
Q ss_pred hccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 159 LEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 159 ~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..+.++.++|.|. +..++.+++++++++.+.+++.
T Consensus 54 ~~~~~~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 90 (114)
T cd04604 54 LDILTLPVADVMTRN--PKTIDPDALAAEALELMEENKI 90 (114)
T ss_pred CccccCCHHHhhccC--CeEECCCCcHHHHHHHHHHcCC
Confidence 344556799999764 5679999999999999988764
No 17
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=83.26 E-value=1.5 Score=30.50 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.6
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++.++|.|-.....++.+++++++++.+.+++.
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~ 90 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGL 90 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCC
Confidence 56799999887677789999999999999999875
No 18
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=83.24 E-value=3.1 Score=32.27 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=39.9
Q ss_pred HhCCCCcHHH---HHHHHHhhccC--CcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 142 ELSGAIEEEE---QDMIENVLEIK--DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 142 ~~~g~l~~~E---~~~i~~v~~~~--~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
-|.|.+++.= ++|++-..+-+ ..+++.||+ ..++.+..++++.++.+++.+.|||
T Consensus 38 lE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~S 97 (187)
T COG3620 38 LEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGIS 97 (187)
T ss_pred HhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCc
Confidence 3567776632 34444444433 356778995 5788899999999999999999998
No 19
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=82.35 E-value=4.4 Score=36.54 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 146 AIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 146 ~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.++++|++-++..+...+-++..+|++ +.++++.+.|++++++.+++.+
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~ 162 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERA 162 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhc
Confidence 378999999999999999999999984 7899999999999999999765
No 20
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=82.21 E-value=1.2 Score=37.88 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...+|+|+|++..++..++.++++.++.+.+.++++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~ 235 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNL 235 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCC
Confidence 677899999987799999999999999999988764
No 21
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=81.46 E-value=26 Score=28.14 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=21.8
Q ss_pred hhHHHHhhchHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 74 TPKSIAVHHATD-VVRFVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 74 lPk~la~~~p~~-i~~~~a~~l~~~~~l~~P~~~~~~ 109 (198)
..|... +.|++ -+......+..+.+.+||++|.+.
T Consensus 146 ~~~~a~-~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~ 181 (222)
T PF01036_consen 146 LRRAAS-AVSPSVGLYNKLRNLTVVLWILYPIVWLLS 181 (222)
T ss_dssp HHHHHT-TSTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355544 44555 444445556666688999999764
No 22
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.77 E-value=1.9 Score=39.43 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=33.3
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+|+|+|..++..++.++++.++++.+.+++.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i 194 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKL 194 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCC
Confidence 4567899999998889999999999999999998874
No 23
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=79.13 E-value=4 Score=27.88 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=29.1
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+ ++..++.+++++++++.+.++++
T Consensus 57 ~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~ 90 (113)
T cd04623 57 LDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRF 90 (113)
T ss_pred cccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCC
Confidence 35688999965 68889999999999999998875
No 24
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=78.41 E-value=2.5 Score=31.08 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=31.0
Q ss_pred hccCCccccccccc-------ccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 159 LEIKDTHVREVMTP-------LVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 159 ~~~~~~~v~eiM~P-------R~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.-....+.++|+| +.++..++.++++.++++.+.+++.+
T Consensus 64 ~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~ 110 (133)
T cd04592 64 KQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVK 110 (133)
T ss_pred cccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCC
Confidence 33444556678875 56788999999999999999998753
No 25
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.79 E-value=3.6 Score=28.79 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLE 160 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~ 160 (198)
++.|+..+...|.++++|++.|...++
T Consensus 3 lrami~aAkADG~id~~E~~~I~~~~~ 29 (95)
T cd07178 3 LRAMIAAAKADGHIDEAERARILGELG 29 (95)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 355566666666666666666666554
No 26
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=76.33 E-value=5 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=27.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+++++|. .+...++.+++++++++.+.+++.
T Consensus 57 ~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~ 89 (112)
T cd04625 57 DTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHL 89 (112)
T ss_pred cCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCC
Confidence 567999994 457789999999999999988764
No 27
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=76.33 E-value=2.6 Score=38.57 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=32.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+|+++|+|...+..++.+++++|+++.+.+++.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~ 196 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKK 196 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCC
Confidence 467899999998889999999999999999998865
No 28
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=75.99 E-value=3.3 Score=28.98 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=30.8
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.++.++|+.-.++..++.++++.++++.+.++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~ 91 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQV 91 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCC
Confidence 4567788999743468899999999999999999875
No 29
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=75.45 E-value=3.5 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.++.++|. .+...++.++++.++++.+.+++.+
T Consensus 55 ~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~ 88 (111)
T cd04603 55 TLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPP 88 (111)
T ss_pred ccChhheee--cCCcEECCCCcHHHHHHHHHHcCCC
Confidence 457999995 4567899999999999999998753
No 30
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=75.20 E-value=2.7 Score=38.30 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+|+|+|+|+.++..++.+++++|+.+.+.+++.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i 192 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRK 192 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCC
Confidence 467899999999999999999999999999998764
No 31
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=75.14 E-value=2.8 Score=37.31 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 155 IENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 155 i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..++ ++..+|+++|.| ++..++.++++.++++.+.+++++
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~ 367 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFD 367 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCC
Confidence 4455 888999999975 588899999999999999887753
No 32
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=75.12 E-value=2.6 Score=35.78 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=30.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|++ ++..++.++++.++++.+.+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 300 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHI 300 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCC
Confidence 456789999976 67889999999999999998874
No 33
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=74.03 E-value=3.2 Score=28.87 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...+.+++++|.+ ++.+++.+++++++++.+.++++
T Consensus 63 ~~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~ 98 (121)
T cd04584 63 LLLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRI 98 (121)
T ss_pred hhcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCC
Confidence 3567789999976 67889999999999999998875
No 34
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=73.52 E-value=3.7 Score=28.39 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.++.++.++|.+ +...++.+++++++++.+.+.+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~ 99 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKIS 99 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCC
Confidence 456789999965 688899999999999999888753
No 35
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=72.76 E-value=4.5 Score=27.72 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=28.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+ ++..++.+++++++++.+.+++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 89 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGI 89 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCC
Confidence 45678999965 68889999999999999988764
No 36
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=71.30 E-value=2.7 Score=35.57 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=30.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+|+|+|.+..++..++.++++.++.+.+.+++.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~ 230 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGL 230 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCC
Confidence 58899999887678899999999999999987764
No 37
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=69.74 E-value=5.3 Score=29.06 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|++ +...++.+++++++++.+.+.++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 112 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANI 112 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCC
Confidence 36689999975 56689999999999999988775
No 38
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=68.37 E-value=5.5 Score=27.29 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+ +...++.++++.++++.+.++++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 88 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRI 88 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCc
Confidence 45678899965 78889999999999999999875
No 39
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=67.44 E-value=7.3 Score=30.92 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhcc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLEI 161 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~~ 161 (198)
++.|+..+...|.|+++|++.|.+.++=
T Consensus 83 lrAMIaAAkADG~ID~~Er~~I~~~l~~ 110 (188)
T PF04391_consen 83 LRAMIAAAKADGHIDEEERQRIEGALQE 110 (188)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5678888899999999999999877654
No 40
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=67.29 E-value=7 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=28.3
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++.++|.+. ...++.++++.++++.+.++++
T Consensus 57 ~~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 89 (114)
T cd04613 57 LVVASDIMTKP--PVVVYPEDSLEDALKKFEDSDY 89 (114)
T ss_pred cEEHHHhccCC--CcEEcCCCCHHHHHHHHhhCCc
Confidence 57899999764 7789999999999999988775
No 41
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=67.09 E-value=3.1 Score=31.56 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHh-CCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLT-HQY 197 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~-~~~ 197 (198)
..+|.|+-+.+++.+.++|.+.. +-..+.=-|+.++.++=+=-.|-.++. ...++++++++.+.+ .|.
T Consensus 32 ~WmspdqAk~li~~A~~eGLl~~-~~~~l~~~Fd~~~v~iP~~FkP~~~~l--~e~~~fe~ild~ia~~~g~ 100 (144)
T PF09999_consen 32 KWMSPDQAKRLIDEAIEEGLLEE-EGGYLVPNFDPSEVEIPLGFKPDEEIL--QERDPFERILDYIAAKTGI 100 (144)
T ss_pred CCCCHHHHHHHHHHHHHCCCeee-cCCEEEEecCccccccCCCCCCcHHHH--hcccHHHHHHHHHHHhcCC
Confidence 46889999999999999998876 455566667777776666666665555 778889999999887 554
No 42
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=65.31 E-value=6.8 Score=27.96 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...++.++|.+ ++..++.++++.++++.+.+.++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 109 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNI 109 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCC
Confidence 34578899964 67889999999999999998875
No 43
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=64.52 E-value=10 Score=25.79 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=26.7
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.++.++|.+. ..+++.++++.++++.+.+++.
T Consensus 50 ~~~~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~ 81 (104)
T cd04594 50 GDVVDYIVRG--IPYVRLTSTAEEAWEVMMKNKT 81 (104)
T ss_pred cchhhhhhcC--CcEEcCCCCHHHHHHHHHHcCc
Confidence 4588888654 6789999999999999998765
No 44
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=64.30 E-value=7.7 Score=26.09 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=28.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+..++++|.+ +...++.++++.++++.+.+++++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~ 83 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIE 83 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCC
Confidence 4578899955 678899999999999999998753
No 45
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=64.23 E-value=7.9 Score=26.14 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|.++ ...++.+++++++++.+.+++.
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~ 83 (107)
T cd04610 51 DETVEEIMSKD--LVVAVPEMDIMDAARVMFRTGI 83 (107)
T ss_pred cccHHHhCCCC--CeEECCCCCHHHHHHHHHHhCC
Confidence 45689999654 6778899999999999988764
No 46
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=64.18 E-value=7.1 Score=27.12 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=29.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+.++.++|.+ +...++.++++.++++.+.+.++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 98 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNI 98 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCC
Confidence 456788899954 68889999999999999998875
No 47
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=64.11 E-value=8 Score=26.69 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|. .++..++.++++.++++.+.+++.
T Consensus 58 ~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~ 91 (114)
T cd04630 58 DRVNVYEIMT--KPLISVSPDMDIKYCARLMERTNI 91 (114)
T ss_pred CccCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCC
Confidence 4567889994 368899999999999999988653
No 48
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=63.58 E-value=8.7 Score=26.27 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=28.4
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+..+.++|.+ +...++.++++.++++.+.+++.
T Consensus 55 ~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 89 (113)
T cd04615 55 LKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNI 89 (113)
T ss_pred hcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCC
Confidence 345678899964 67889999999999999988763
No 49
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=63.06 E-value=13 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.1
Q ss_pred ccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 165 HVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 165 ~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++.++|.|. ...++.++++.++++.+.+++++
T Consensus 52 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 83 (106)
T cd04582 52 CCGDHAEPF--KVTVSVDDDLRIVLSRMFAHDMS 83 (106)
T ss_pred chhhhcccC--CEEECCCCCHHHHHHHHHHCCCC
Confidence 478888664 56689999999999999998753
No 50
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=63.06 E-value=8.6 Score=26.25 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=27.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...+++++|.+ +...++.+++++++++.+.++++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 89 (113)
T cd04622 56 DTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQV 89 (113)
T ss_pred ccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCC
Confidence 34458999965 57778999999999999988764
No 51
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=62.79 E-value=44 Score=22.39 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHhh
Q 046285 133 ELKLMLRGAELSGAIEEEEQDMIENVL 159 (198)
Q Consensus 133 el~~lv~~~~~~g~l~~~E~~~i~~v~ 159 (198)
++..++++-. .|-++++|.+++++++
T Consensus 42 D~L~mL~eKT-kGNL~~~E~~lL~~~L 67 (74)
T PF08899_consen 42 DLLAMLQEKT-KGNLDEEEERLLESAL 67 (74)
T ss_pred HHHHHHHHHH-ccCCCHHHHHHHHHHH
Confidence 3345665544 5679999999999986
No 52
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=62.49 E-value=5 Score=28.47 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCcccccccccccceEEEe----CCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAID----GSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~----~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+...+..++ .++++.++++.+.+++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~ 101 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGR 101 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCC
Confidence 4677999997655555554 68899999999998875
No 53
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=61.66 E-value=42 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 046285 59 ATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLK 117 (198)
Q Consensus 59 ~~~i~t~l~lifgEilPk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r 117 (198)
....++++.++|.-++-|+ ++.|++.-+|+|++++..|+-|.-.|
T Consensus 191 il~~~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~ck 235 (285)
T PF03563_consen 191 ILTCLTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSCK 235 (285)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666665 56678888999999999998776544
No 54
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=61.39 E-value=11 Score=26.95 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.4
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...+.+++++|.+ +...++.++++.++++.+.+.+.
T Consensus 77 ~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 112 (135)
T cd04586 77 RSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRI 112 (135)
T ss_pred HhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCC
Confidence 3466789999954 67889999999999999998875
No 55
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=61.32 E-value=5.7 Score=36.67 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=29.4
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++..+|+|+|+|. ...++.+++++|+.+.+.++++
T Consensus 444 L~~~~V~dim~~~--~~~v~~~~tl~ea~~~l~~~~~ 478 (574)
T PRK01862 444 LRTTQMRELIQPA--QTVVPPTASVADMTRVFLEYPV 478 (574)
T ss_pred HhhCcHHHHhcCC--CceeCCCCCHHHHHHHHHhCCC
Confidence 6778999999864 4568999999999999988765
No 56
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=60.21 E-value=10 Score=25.78 Aligned_cols=33 Identities=36% Similarity=0.361 Sum_probs=27.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++.++|. .++..++.+++++++++.+.+++.
T Consensus 56 ~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~ 88 (111)
T cd04800 56 DTPVSEVMT--APPITIPPDATVFEALLLMLERGI 88 (111)
T ss_pred cCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCC
Confidence 467888884 468889999999999999998864
No 57
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=59.58 E-value=11 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++.++|.+ .+..++.++++.++++.+.+++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 89 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSI 89 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCC
Confidence 4568899954 56789999999999999998864
No 58
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=59.51 E-value=11 Score=25.72 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=28.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+ +...++.++++.++++.+.+++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 87 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDI 87 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCC
Confidence 46778899965 67789999999999999988764
No 59
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=58.75 E-value=11 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=28.7
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.++.++| +.+...++.+++++++++.+.+.+.
T Consensus 64 ~~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (122)
T cd04803 64 ERDVPVAEVM--KTDVLTVTPDTPLREAAEIMVENKI 98 (122)
T ss_pred ccCcCHHHhh--CCCCeEeCCCCcHHHHHHHHHHcCC
Confidence 3567788888 4567789999999999999988764
No 60
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=58.04 E-value=12 Score=25.21 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=25.8
Q ss_pred CcccccccccccceEEEeC-CCCHHHHHHHHHhCCCC
Q 046285 163 DTHVREVMTPLVDVVAIDG-SATLIDFHNLWLTHQYS 198 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~-~~~~~e~~~~~~~~~~S 198 (198)
+.++.++|.++.. .+.. ++++.++++.+.+++++
T Consensus 53 ~~~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 87 (110)
T cd04601 53 DKPVSEVMTPENL--LTTVEGTSLEEALELLHEHKIE 87 (110)
T ss_pred CCCHHHhcccCce--EEecCCCCHHHHHHHHHHhCCC
Confidence 4678899965433 3444 99999999999998763
No 61
>PRK11573 hypothetical protein; Provisional
Probab=58.00 E-value=1.4e+02 Score=26.58 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=19.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhCC
Q 046285 175 DVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 175 ~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
+...++.+.++.++++.+++++
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~ 284 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNK 284 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcC
Confidence 4778999999999999999876
No 62
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=57.70 E-value=7.5 Score=32.53 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.8
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
+.+|+|+| |.+++.++.|..+-|+++++.+++
T Consensus 233 ~~kV~~~M--~k~vitI~eDe~i~dAir~M~~~n 264 (294)
T COG2524 233 DAKVSDYM--RKNVITINEDEDIYDAIRLMNKNN 264 (294)
T ss_pred cccHHHHh--ccCCceEcCchhHHHHHHHHHhcC
Confidence 56899999 668999999999999999999876
No 63
>PRK09458 pspB phage shock protein B; Provisional
Probab=56.86 E-value=57 Score=21.89 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHHHhhccC
Q 046285 89 FVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKL---MLRGAELSGAIEEEEQDMIENVLEIK 162 (198)
Q Consensus 89 ~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~---lv~~~~~~g~l~~~E~~~i~~v~~~~ 162 (198)
.++.|+.+|..+..|+=.++...+ +.+....+|++|.+. +.+.++. + ++--+-++++++-+
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~s---------k~~~~~~Ls~~d~~~L~~L~~~A~r---m-~~RI~tLE~ILDae 68 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRS---------KRQGSQGLSQEEQQRLAQLTEKAER---M-RERIQALEAILDAE 68 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcc---------cccCCCCCCHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHccc
Confidence 456677777777777655554432 223345688887544 3333322 2 12234466666543
No 64
>PF14163 SieB: Superinfection exclusion protein B
Probab=56.73 E-value=82 Score=23.61 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=12.9
Q ss_pred CcHHHHHHHHHhhccCCccc
Q 046285 147 IEEEEQDMIENVLEIKDTHV 166 (198)
Q Consensus 147 l~~~E~~~i~~v~~~~~~~v 166 (198)
++++|+..+.-.+.=++.++
T Consensus 79 Lt~~EkavL~~~~~~~~~~~ 98 (151)
T PF14163_consen 79 LTPEEKAVLREFYIQGNNTL 98 (151)
T ss_pred CCHHHHHHHHHHHHCCCCeE
Confidence 67777777766666554443
No 65
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=56.55 E-value=15 Score=24.99 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=27.1
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++++.++|.+ ....++.++++.++++.+.+++.
T Consensus 57 ~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~ 89 (113)
T cd04587 57 STLVERVMTP--NPVCATSDTPVLEALHLMVQGKF 89 (113)
T ss_pred cCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCC
Confidence 3678899954 56689999999999999988763
No 66
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=56.51 E-value=9.3 Score=26.22 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.++++.++|.| +...++.++++.++++.+.+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~ 93 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP 93 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC
Confidence 57789999976 4777999999999999998765
No 67
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=56.41 E-value=12 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.. +...++.+++++++++.+.+++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~ 90 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGL 90 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCC
Confidence 34678899954 67789999999999999999875
No 68
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=56.26 E-value=12 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.++.++|. .+...++.++++.++.+.+.+++.
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~ 98 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDI 98 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCC
Confidence 4667888884 467889999999999999998774
No 69
>COG0517 FOG: CBS domain [General function prediction only]
Probab=55.98 E-value=26 Score=23.83 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=32.1
Q ss_pred HHHHHHhhccCCc--ccccccccccceEEEeCCCCHHHHHHHHHh-CCC
Q 046285 152 QDMIENVLEIKDT--HVREVMTPLVDVVAIDGSATLIDFHNLWLT-HQY 197 (198)
Q Consensus 152 ~~~i~~v~~~~~~--~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~-~~~ 197 (198)
++++.....-... .+.++|++ .+..++.++++.++.+.+.+ +++
T Consensus 48 ~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~ 94 (117)
T COG0517 48 RDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKI 94 (117)
T ss_pred HHHHHHHhccCCccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCc
Confidence 3444444433333 69999987 88899999999999999988 454
No 70
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=55.98 E-value=9.9 Score=26.82 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+..++++|.+ ++.+++.++++.++++.+.++++
T Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~ 102 (128)
T cd04632 68 MLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDD 102 (128)
T ss_pred hccCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCC
Confidence 345679999964 68889999999999999998764
No 71
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=55.88 E-value=13 Score=25.30 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..++++|.+ +..+++.+++++++.+.+.+++.
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 84 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGI 84 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCC
Confidence 35679999964 57789999999999999988764
No 72
>COG3462 Predicted membrane protein [Function unknown]
Probab=55.86 E-value=62 Score=23.37 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHH
Q 046285 135 KLMLRGAELSGAIEEEEQDMIEN 157 (198)
Q Consensus 135 ~~lv~~~~~~g~l~~~E~~~i~~ 157 (198)
.+++++--..|++++||-+-+.+
T Consensus 91 ~eIlkER~AkGEItEEEY~r~~~ 113 (117)
T COG3462 91 EEILKERYAKGEITEEEYRRIIR 113 (117)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 34667777899999999665544
No 73
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=55.61 E-value=13 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
..+.++.++|.+ +...++.++++.++++.+.+.+
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 99 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIAELVPLLADGG 99 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcC
Confidence 356678999954 6788999999999999998875
No 74
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=55.24 E-value=12 Score=34.29 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+..|+++|+ +.+...++.+++++++.+.+.+++++
T Consensus 244 ~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~ 279 (546)
T PRK14869 244 QSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYR 279 (546)
T ss_pred cCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCC
Confidence 3688999998 46899999999999999999988763
No 75
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=55.14 E-value=11 Score=26.22 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..++++|.+ ++..++.++++.++++.+.+.+.
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 101 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIKDAAELMLEKRV 101 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCC
Confidence 45678898854 68899999999999999998764
No 76
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=54.74 E-value=14 Score=25.08 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=27.9
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++.++|. +++..++.++++.++++.+.+++.
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~ 88 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQI 88 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCC
Confidence 457888885 567789999999999999998864
No 77
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=54.56 E-value=13 Score=25.20 Aligned_cols=33 Identities=33% Similarity=0.253 Sum_probs=27.6
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..+.++|. .++..++.+++++++.+.+.+++.
T Consensus 55 ~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 87 (111)
T cd04639 55 DAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGA 87 (111)
T ss_pred CCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCC
Confidence 457889985 478889999999999999998764
No 78
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=54.00 E-value=12 Score=27.24 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..+.++|.+ +...++.+++++++++.+.++++
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~ 120 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIEDAAELMVRHKI 120 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence 56778899965 67899999999999999998875
No 79
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=53.64 E-value=15 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..+.++|.+ +...++.++++.++++.+.+++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 91 (114)
T cd04629 58 GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKP 91 (114)
T ss_pred CCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCC
Confidence 35678899965 57789999999999999988753
No 80
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=53.39 E-value=17 Score=25.02 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.0
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|.+....+..+.++++.++++.+.+++.
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 90 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLEEANEILRESKK 90 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCC
Confidence 35588999777666666669999999999998864
No 81
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=53.00 E-value=12 Score=33.46 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|+| +...++.+++.+++.+.+.++++
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~ 226 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDF 226 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCC
Confidence 56789999976 57789999999999999998875
No 82
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=52.61 E-value=23 Score=23.71 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSAT 184 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~ 184 (198)
...|.||+...+..+-..|. +++.|.|..=+.+.+|...+-.++....
T Consensus 18 s~~s~dev~~~v~~Al~~~~----------~~l~LtD~kGr~~lVp~~~iaYVeiG~~ 65 (74)
T PF11305_consen 18 SDQSADEVEAAVTDALADGS----------GVLTLTDEKGRRVLVPAASIAYVEIGSE 65 (74)
T ss_pred cCCCHHHHHHHHHHHHhCCC----------ceEEEEeCCCCEEEEECCcEEEEEEcCC
Confidence 45688999999988866552 5678999999999999999999987654
No 83
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=51.89 E-value=17 Score=24.58 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..+.++|.+ ++..++.++++.++++.+.+++.
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~ 87 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGI 87 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCC
Confidence 46778899864 67889999999999999988764
No 84
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=51.45 E-value=17 Score=25.08 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=28.1
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.+.+++++|.+ +...++.+++++++.+.+.+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 91 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRD 91 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCC
Confidence 56789999965 6888999999999999998775
No 85
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=50.25 E-value=78 Score=21.43 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHhhhhhHHHHhh--chHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 046285 67 ILLLTEITPKSIAVH--HATDVVRFVVRPVAWLS-LILYPVGRVCT 109 (198)
Q Consensus 67 ~lifgEilPk~la~~--~p~~i~~~~a~~l~~~~-~l~~P~~~~~~ 109 (198)
.++.--.+|-.+|.+ ||..=+-..++.+.++. ..++|+.++--
T Consensus 19 ~~~~lh~lP~~iA~kr~Hpq~eaI~v~gwisLft~~~lWp~a~IwA 64 (78)
T PF11742_consen 19 GFWKLHDLPGKIAHKRNHPQAEAIHVLGWISLFTLHVLWPFAWIWA 64 (78)
T ss_pred HHHHHHhhHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556789999977 78888888888888654 57899988654
No 86
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=50.22 E-value=28 Score=29.32 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+..|+|+|++ +...++.++++.++++.+.+++.
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 294 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKI 294 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence 35679999975 67789999999999999998764
No 87
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=49.37 E-value=21 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|.+ +...++.++++.++++.+.+++.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~ 89 (115)
T cd04593 57 PSAVDEVATP--PLLTVHPDEPLAHALDRMASRGL 89 (115)
T ss_pred cccHHHhccC--CceEECCCCCHHHHHHHHHHcCC
Confidence 3447888853 67889999999999999998764
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=49.35 E-value=11 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.3
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+|+|+|.+. ++..++.++++.++++.+.+.++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~ 187 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRL 187 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCC
Confidence 7899999865 37789999999999999987764
No 89
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=48.82 E-value=22 Score=23.90 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=25.9
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
..+.++|.+ ++..++.++++.++.+.+.+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 84 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRG 84 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcC
Confidence 467888864 5778999999999999998865
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=47.58 E-value=19 Score=29.36 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++|+|.+ +...++.++++.++++.+.+++.
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 251 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKI 251 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence 35779999954 47789999999999999999874
No 91
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=46.59 E-value=29 Score=32.09 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=28.2
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+++|+|.+ +...++.|++++|+++.+.+++.
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~ 543 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQG 543 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHHHHHHHHHhcCC
Confidence 4679999964 56789999999999999999875
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=46.44 E-value=16 Score=33.40 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.+|+|+|.+ ++..++.++++.++++.+.+++++
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~ 100 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVK 100 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCC
Confidence 4689999975 788899999999999999988753
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=46.15 E-value=19 Score=32.36 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|+| .++..++.+++++++++.+.+++.
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~ 175 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRI 175 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCC
Confidence 46789999986 588899999999999999998864
No 94
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=46.06 E-value=1.2e+02 Score=22.51 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhh--HHHHHHHHHHHHHHHHHhhhh
Q 046285 31 GTTVVNIGATALVTEAATA-IFGE--AGVSAATGVMTVAILLLTEIT 74 (198)
Q Consensus 31 g~tl~~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~t~l~lifgEil 74 (198)
-|.+++++++.+++..... .++. .+.-+.+.++..+++.++|+.
T Consensus 83 ~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 83 FNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554443322 2311 222333444445556666754
No 95
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=45.35 E-value=1.3e+02 Score=22.68 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=21.2
Q ss_pred HhhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHc
Q 046285 79 AVHHATDVVR----FVVRPVAWLSLILYPVGRVCTFISMGMLKAL 119 (198)
Q Consensus 79 a~~~p~~i~~----~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~ 119 (198)
+---|..++. ..+.....+..++.-+.+|+.+..+.+.+.+
T Consensus 103 ~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~ 147 (183)
T PF01595_consen 103 GEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKI 147 (183)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555554 3344444444555556666666666555543
No 96
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.03 E-value=93 Score=20.85 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccC
Q 046285 89 FVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIK 162 (198)
Q Consensus 89 ~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~ 162 (198)
.+++|+-+|..+..|+-.++...++ .+....+|++|.+.+-+..+....+ ++--+-++++++-+
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk---------~~~~~gLs~~d~~~L~~L~~~a~rm-~eRI~tLE~ILdae 68 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSK---------WKSSQGLSEEDEQRLQELYEQAERM-EERIETLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------cccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 4566777776777776655555432 2234457777765443333222112 12233466666543
No 97
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=43.71 E-value=22 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=29.0
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|++ ++..++.++++.|+++.+.+++.
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i 177 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPR 177 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCC
Confidence 4679999985 68889999999999999999875
No 98
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.11 E-value=29 Score=28.08 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhccC
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLEIK 162 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~~~ 162 (198)
++.|+..+...|.||+.||.+|..-++-+
T Consensus 114 l~AmIaAAkaDGhIDe~ERa~I~~~l~es 142 (225)
T COG2979 114 LRAMIAAAKADGHIDEKERARIMQKLQES 142 (225)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHHHHHHc
Confidence 67899999999999999999999655443
No 99
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=40.85 E-value=13 Score=34.64 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=35.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccc
Q 046285 119 LGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMT 171 (198)
Q Consensus 119 ~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~ 171 (198)
+|++..+-..+|+||++.+.+.. +|+ .+-..+++++++|+..|+|-+
T Consensus 196 lgi~~~~p~~lt~ee~~~~~~L~-----IDp-~~I~w~Rv~D~NDR~LR~I~v 242 (625)
T PTZ00386 196 LGISKTDPKQLTEEERVRFARLD-----IDP-DTISWRRVTDVNDRMLREITI 242 (625)
T ss_pred hccCcCCccccCHHHhhhhhhcC-----cCc-ceeEEEeeccccchhhhceee
Confidence 47775444579999999887765 554 345688999999999999965
No 100
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=40.79 E-value=25 Score=24.35 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=27.0
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|. .+...++.+++++++++.+.+++.
T Consensus 66 ~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~ 98 (122)
T cd04637 66 NRRAHQIMT--RDPITVSPDTPVDEASKLLLENSI 98 (122)
T ss_pred HhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCC
Confidence 346888884 468889999999999999988764
No 101
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=40.49 E-value=19 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=35.7
Q ss_pred HHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 155 IENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 155 i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..+....+.+|.++|++ +...++.|+|+.|+.+.|.++|.
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i 203 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGI 203 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCc
Confidence 456777889999999986 67889999999999999999885
No 102
>PF14044 NETI: NETI protein
Probab=40.03 E-value=39 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred EEEeCCCCHHHHHHHHHhCCCC
Q 046285 177 VAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 177 ~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+-+..|.|+++-++++.+.||.
T Consensus 2 FeV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCC
Confidence 3477899999999999999995
No 103
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=40.00 E-value=42 Score=22.50 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=25.7
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.++|. .++..++.++++.++++.+.+++.
T Consensus 56 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 87 (111)
T cd04612 56 VLVGDVMT--RDPVTASPDETLRDALKRMAERDI 87 (111)
T ss_pred cCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCC
Confidence 45667775 467889999999999999988763
No 104
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=39.94 E-value=89 Score=23.27 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcHH-HHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhC
Q 046285 126 EPYVTEDELKLMLRGAELSGAIEEE-EQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH 195 (198)
Q Consensus 126 ~~~~s~eel~~lv~~~~~~g~l~~~-E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~ 195 (198)
+..++.+++..+++.- ++|.++.. -++++..+++- +.++.+++--. +...++..+.++++++.+.+.
T Consensus 37 ~~~i~~~~l~~li~l~-~~~~Is~~~ak~ll~~~~~~-~~~~~~ii~~~-~l~~i~d~~el~~~v~~vi~~ 104 (148)
T PF02637_consen 37 DSPISPEHLAELINLL-EDGKISKKSAKELLRELLEN-GKSPEEIIEEN-GLWQISDEEELEALVEEVIAE 104 (148)
T ss_dssp TSSSTHHHHHHHHHHH-HTTSSGHHHHHHHHHHHHHH-TS-HHHHHHHT-T---B--CCHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHc-CCCHHHHHHHc-CCCcCCCHHHHHHHHHHHHHH
Confidence 3468899999999774 55677664 48888888866 88888888555 777777667788877776653
No 105
>PF05848 CtsR: Firmicute transcriptional repressor of class III stress genes (CtsR); InterPro: IPR008463 This family consists of several Firmicute transcriptional repressor of class III stress gene (CtsR) proteins. CtsR of Listeria monocytogenes negatively regulates the clpC, clpP and clpE genes belonging to the CtsR regulon [].; PDB: 3H0D_A.
Probab=39.75 E-value=59 Score=24.90 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLE 160 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~ 160 (198)
+..|+++-..+++.-.++|.+++.|..|+..+++
T Consensus 91 ~~is~~~a~~ii~~L~e~~~it~REa~l~~~~i~ 124 (152)
T PF05848_consen 91 DSISQQDAEDIIQRLLEEGLITEREANLMKAAIS 124 (152)
T ss_dssp S---HHHHHHHHHHHHHTTSS-HHHHHHHHHHT-
T ss_pred CcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhh
Confidence 3578889999999999999999999999999976
No 106
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.57 E-value=28 Score=31.64 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++|+|++ ++..++.+++++|+++.+.+++.
T Consensus 147 ~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i 179 (479)
T PRK07807 147 FTQVRDVMST--DLVTLPAGTDPREAFDLLEAARV 179 (479)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHhcCC
Confidence 4679999984 78889999999999999998864
No 107
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=39.53 E-value=35 Score=23.25 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=25.8
Q ss_pred CCcccccccccccceEEEeCC--CCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGS--ATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~--~~~~e~~~~~~~~~~ 197 (198)
++.+++++|.+ ++..++.+ +++.++++.+.+++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~ 91 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQI 91 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCC
Confidence 35678899954 56667666 789999999998764
No 108
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=39.37 E-value=46 Score=22.33 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=24.9
Q ss_pred ccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 165 HVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 165 ~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.++++|.+ ++..++.+++++++++.+.+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~ 85 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPIDVAARKMERHN 85 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHHHHHHHHHHhC
Confidence 47788854 5778999999999999998876
No 109
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=39.30 E-value=36 Score=23.03 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.8
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
+.+++++|.| +...++.++++.++.+.+.+++
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ 83 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYD 83 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcC
Confidence 4678899855 5888999999999999998765
No 110
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=38.55 E-value=48 Score=17.86 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=16.9
Q ss_pred eEEEeCCCCHHHHHHHHHhCCC
Q 046285 176 VVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 176 i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++.++++.++.+.+.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGI 23 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCC
Confidence 4567888888888888877664
No 111
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=37.94 E-value=37 Score=22.96 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=26.7
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+..++++|.+ +...++.++++.++++.+.+++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 88 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNI 88 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCc
Confidence 4568888854 68889999999999999987653
No 112
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.09 E-value=1e+02 Score=19.34 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHH
Q 046285 57 SAATGVMTVAILLLTEITPKS 77 (198)
Q Consensus 57 ~~~~~i~t~l~lifgEilPk~ 77 (198)
.+..++.+++..++++.+||.
T Consensus 35 ~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 35 AIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 345556677778888888863
No 113
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=35.70 E-value=59 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLE 160 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~ 160 (198)
++.+.+.+...|.+++.|.++|+++-+
T Consensus 76 l~~L~~vA~ADG~~~~~E~~~l~~ia~ 102 (104)
T cd07313 76 VEALWEVAYADGELDEYEEHLIRRVAD 102 (104)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 345667778899999999999998754
No 114
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=34.54 E-value=62 Score=23.78 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhccC
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRGAE----LSGAIEEEEQDMIENVLEIK 162 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~~~----~~g~l~~~E~~~i~~v~~~~ 162 (198)
.++.+++-.|+++.. -..+|+||+..+-+.-+ -+|++..+-+.-|++..+.+
T Consensus 29 ~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~~~~vegDLr~~v~~dIkRl~~i~ 85 (121)
T COG0099 29 RAKEICKKAGIDPDKRVGELTEEEIERLRDAIQNKYLVEGDLRREVRMDIKRLMKIG 85 (121)
T ss_pred HHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHhcCeehhHHHHHHHHHHHHHHHhh
Confidence 466777777888753 45799999887655444 35666666666677666554
No 115
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=34.46 E-value=29 Score=31.09 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhC
Q 046285 145 GAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH 195 (198)
Q Consensus 145 g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~ 195 (198)
|.+...+-+.+ +=..+.+.|+||||. +..+.+.++++.-+.+.++
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~ 200 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLKEANEILKKI 200 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHHHHHHHHHhh
Confidence 34444444444 556788999999999 7788899998877776665
No 116
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=34.11 E-value=45 Score=22.33 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.++|.+ +...++.+++++++++.+.+++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 83 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNI 83 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCC
Confidence 456777753 57778999999999999998874
No 117
>PF12520 DUF3723: Protein of unknown function (DUF3723) ; InterPro: IPR022198 This family of proteins is found in eukaryotes. Proteins in this family are typically between 374 and 1069 amino acids in length. There is a conserved LGF sequence motif.
Probab=33.51 E-value=96 Score=28.50 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred hhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCcH-HH
Q 046285 73 ITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEE-EE 151 (198)
Q Consensus 73 ilPk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~-~E 151 (198)
.+.|.++.+.+|.++.++..+-.++..++..=-.....+..--.+.+....+.-.....+.++.+++.|+--..+++ +|
T Consensus 167 ~l~k~l~~~c~Eei~~YL~~I~~~w~~i~~~~~~~~~~iD~~tV~~Lq~~aP~~S~~D~~~i~~l~~~g~~F~~~~~~~e 246 (511)
T PF12520_consen 167 NLHKLLALRCDEEILHYLDHIYEFWSSIVGGDPDAMAKIDAHTVEALQLRAPGASRRDRRTIRGLMLSGQLFPAFSDPEE 246 (511)
T ss_pred cHHHHhhcCChHHHHHHHHHHHHHHHHHhCCChhhhhcCCHHHHHHHhccCCCCcHHHHHHHHHHHHCCccccCCCchHH
Confidence 57899999999999999998888888877433222333333333333222111112234456667776665555655 66
Q ss_pred HH-HHHHhhccC
Q 046285 152 QD-MIENVLEIK 162 (198)
Q Consensus 152 ~~-~i~~v~~~~ 162 (198)
|+ +.+++.+++
T Consensus 247 R~~i~~~l~~~~ 258 (511)
T PF12520_consen 247 REAIWERLLQFD 258 (511)
T ss_pred HHHHHHHHHcCC
Confidence 54 456666654
No 118
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=33.41 E-value=42 Score=30.44 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=29.2
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+++++|++ .++..++.+++++++.+.+.++++
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~ 179 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRI 179 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCC
Confidence 4679999984 468889999999999999998875
No 119
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=33.28 E-value=70 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLE 160 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~ 160 (198)
++.+.+.+...|.+++.|.++|+.+-+
T Consensus 77 l~~l~~vA~ADG~~~~~E~~~l~~ia~ 103 (106)
T cd07316 77 LEFLFQIAYADGELSEAERELLRRIAR 103 (106)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455667778899999999999998754
No 120
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=33.16 E-value=84 Score=23.86 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHh---hccCCcccccccccccceEEEeCCCCHHHHHHH
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENV---LEIKDTHVREVMTPLVDVVAIDGSATLIDFHNL 191 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v---~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~ 191 (198)
++.++.-+...|.+++.|.+++.++ +.+++...++++-. ..+.+++.....
T Consensus 27 ~~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~-------~~~~~L~~~~~~ 80 (150)
T cd07311 27 LKALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY-------TADEDLEEVDFR 80 (150)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh-------CccccHHHHHHH
Confidence 3456667777888888888887777 45555555666655 455555554443
No 121
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.94 E-value=1.8e+02 Score=20.76 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 52 GEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 52 ~~~~~~~~~~i~t~l~lifgEilPk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~ 108 (198)
|++++.+..+++..+.++..-..|.. ..=.|+++. .+.-++.+...+..|++...
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~-~~fDpyPFi-lLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPR-PAFDPYPFI-LLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcccc-CCCCCccHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444 112333322 23345666677788888654
No 122
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=32.80 E-value=1.3e+02 Score=19.00 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGA----IEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~----l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-+..+..|- .+.++++-+..-+.+++..|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvK 50 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFK 50 (58)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHee
Confidence 35789999999998888898 899999999888888877664
No 123
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=32.13 E-value=60 Score=27.97 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=30.5
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+...+|+.||+|+ +.++..+++..|++..+.+.|+
T Consensus 311 ~~~~~~vk~imt~~--v~tv~pdtpa~~lvp~lad~g~ 346 (382)
T COG3448 311 FLRPPTVKGIMTTP--VVTVRPDTPAVELVPRLADEGL 346 (382)
T ss_pred ccCCCcccccccCc--ceeecCCCcHHHHHHHhhcCCc
Confidence 45778999999975 5778999999999999988874
No 124
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.98 E-value=65 Score=22.31 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.9
Q ss_pred ccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 167 REVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 167 ~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.++| ..++..++.++++.++++.+.+++.
T Consensus 71 ~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~ 99 (123)
T cd04627 71 LTIG--TSDVISINGDQPLIDALHLMHNEGI 99 (123)
T ss_pred cccC--cCCceEeCCCCCHHHHHHHHHHcCC
Confidence 3456 4568889999999999999999875
No 125
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=30.96 E-value=3.1e+02 Score=22.76 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhchHHHHHHHHHHHHHHH
Q 046285 20 DVTRFLTTILIGTTVVNIGATALVTEAATAIF-GEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLS 98 (198)
Q Consensus 20 ~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~t~l~lifgEilPk~la~~~p~~i~~~~a~~l~~~~ 98 (198)
++++-+....+-.|+.....|........+.+ ++.......++.+.+.++++|..++. ..+..+++..+-+-.+-++.
T Consensus 76 ~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~~~~~~~-~~~~~~~~~~~dal~iGl~Q 154 (259)
T PF02673_consen 76 NPDRRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLADRLKRK-GRKDEEDITFKDALIIGLAQ 154 (259)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHccC-CCCCcccCCHHHHHHHHHHH
Confidence 45555555555556666666665555555555 34444445567777888999988876 44444444444443333333
Q ss_pred HH-HHH-HHHHH
Q 046285 99 LI-LYP-VGRVC 108 (198)
Q Consensus 99 ~l-~~P-~~~~~ 108 (198)
-+ +.| +.+--
T Consensus 155 ~lAl~PGiSRSG 166 (259)
T PF02673_consen 155 GLALIPGISRSG 166 (259)
T ss_pred HcccCCCcChHH
Confidence 22 355 44433
No 126
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=30.78 E-value=3.3e+02 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=17.5
Q ss_pred HhhchHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 046285 79 AVHHATDVVR--FVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 79 a~~~p~~i~~--~~a~~l~~~~~l~~P~~~~~~ 109 (198)
+...+.++.. ....-...+.|+.||++|.+.
T Consensus 182 a~~~~~~v~~~F~~l~~~~vvLWl~YPivW~ig 214 (285)
T COG5524 182 AKTRGTEVRSLFLTLRNYTVVLWLGYPIVWLIG 214 (285)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhccceeEEc
Confidence 4445555543 233334445567799998654
No 127
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.00 E-value=52 Score=29.93 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=28.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+..+++++|+ .+...++.+++++++.+.+.+++++
T Consensus 87 ~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s 121 (479)
T PRK07807 87 AWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHG 121 (479)
T ss_pred hhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCc
Confidence 3566789985 5677899999999999999887764
No 128
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=29.34 E-value=62 Score=21.68 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=26.3
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.++|. .....++.++++.++++.+.+.+.
T Consensus 55 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 86 (110)
T cd04588 55 AKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNV 86 (110)
T ss_pred cCHHHHhc--CCceEECCCCCHHHHHHHHHhcCC
Confidence 56778874 478889999999999999987764
No 129
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=28.95 E-value=1.2e+02 Score=23.20 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=22.0
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRGAE 142 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~~~ 142 (198)
.+..+++.+|+++.. -..+|++|+..+.+.-+
T Consensus 42 ~A~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~ 74 (154)
T PTZ00134 42 FAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIA 74 (154)
T ss_pred HHHHHHHHcCcCcCCCcccCCHHHHHHHHHHHh
Confidence 456777788888653 45688988877655443
No 130
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=28.86 E-value=64 Score=22.74 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=24.5
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHH
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWL 193 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~ 193 (198)
.+.+|.|+|++ ++..++.+++++++.+.+.
T Consensus 57 ~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~ 86 (124)
T cd04608 57 PSDPVSKALYK--QFKRVNKNDTLGKLSRILE 86 (124)
T ss_pred CCCcHHHHhhc--cceecCCCCCHHHHHhhcc
Confidence 45789999965 6778999999999888653
No 131
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=28.22 E-value=52 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=24.6
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..++++|. +...++.++++.++++.+.+++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~ 87 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERS 87 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHHHHHHHHHhcCC
Confidence 45666663 36778999999999999998875
No 132
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=27.74 E-value=56 Score=21.73 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.5
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHh
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLT 194 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~ 194 (198)
+..+.++|.+ +...++.++++.++.+.+.+
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~ 85 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIEELSELLDR 85 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHHHHHHHHHh
Confidence 4678888843 57889999999999988877
No 133
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=27.23 E-value=1.1e+02 Score=19.84 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=24.0
Q ss_pred cccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 166 VREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 166 v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.++|. .+...++.++++.++.+.+.+.+.
T Consensus 60 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (113)
T cd02205 60 VGDVMT--RDVVTVSPDTSLEEAAELMLEHGI 89 (113)
T ss_pred HHHHhc--CCceecCCCcCHHHHHHHHHHcCC
Confidence 566774 467888999999999999988753
No 134
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=27.01 E-value=4.6e+02 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=19.2
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHH
Q 046285 18 RTDVTRFLTTILIGTTVVNIGATALVT 44 (198)
Q Consensus 18 ~~~~~~~l~tilig~tl~~~~~~~~~~ 44 (198)
.+||.|+.-.+.+|..+.-+..-.+..
T Consensus 5 ~~d~rr~~~~lkvglal~lvsl~~~~~ 31 (406)
T PF11744_consen 5 KDDPRRVIHSLKVGLALTLVSLLYFVG 31 (406)
T ss_pred ccCcchhhhhHHHHHHHHHHHHHHHhh
Confidence 468888888888888776665444433
No 135
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=26.56 E-value=1.7e+02 Score=22.17 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=20.8
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRG 140 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~ 140 (198)
.+..+++.+|+++.. -..+|++|+..+.+.
T Consensus 33 ~a~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~ 63 (144)
T TIGR03629 33 FARAIARKLGVDPNAKLGYLDDEEIEKLEEA 63 (144)
T ss_pred HHHHHHHHcCcCCCCCcccCCHHHHHHHHHH
Confidence 456677788888653 456889888766554
No 136
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=26.54 E-value=2.5e+02 Score=20.88 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHH
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEE-QDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLW 192 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E-~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~ 192 (198)
..++.+.+..+++. -++|.++... ++++..+++- +.++.++..-. ....++.++.++++++.+
T Consensus 37 ~~i~~~~l~~li~l-v~~g~It~~~ak~vl~~~~~~-~~~~~~ii~~~-~l~~isd~~el~~~v~~v 100 (147)
T smart00845 37 SPITPEHLAELLKL-IEDGTISGKIAKEVLEELLES-GKSPEEIVEEK-GLKQISDEGELEAIVDEV 100 (147)
T ss_pred CCCCHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHc-CCCHHHHHHHc-CCccCCCHHHHHHHHHHH
Confidence 45788889988866 4557776644 6677777654 45566655433 222333333455555443
No 137
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.36 E-value=84 Score=21.86 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=21.4
Q ss_pred cccceEEEeCCCCHHHHHHHHHhCC
Q 046285 172 PLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 172 PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
...+...++.++++.++++.+.+++
T Consensus 77 ~~~~~~~v~~~~~l~~a~~~~~~~~ 101 (126)
T cd04642 77 KSRPLITCTPSSTLKEVITKLVANK 101 (126)
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhC
Confidence 3456888999999999999998875
No 138
>PRK00182 tatB sec-independent translocase; Provisional
Probab=26.08 E-value=56 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHh-hhhhHHH
Q 046285 51 FGEAGVSAATGVMTVAILLLT-EITPKSI 78 (198)
Q Consensus 51 ~~~~~~~~~~~i~t~l~lifg-EilPk~l 78 (198)
|+..|++-.++++++.+++|| |=+|+..
T Consensus 2 F~~IG~~EllvIlvIaLlVfGPerLP~~~ 30 (160)
T PRK00182 2 FSSVGWGEILLLLIVGLIVIGPERLPRLI 30 (160)
T ss_pred cccccHHHHHHHHHHHHHhcCchHHHHHH
Confidence 333455555667777778888 8888865
No 139
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=25.97 E-value=54 Score=31.04 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=31.8
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+++.+++|+|.+ .+++++.-+.++.+.+..+.+.|
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~H 613 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNH 613 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCc
Confidence 567889999998 99999999999999999998877
No 140
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.55 E-value=74 Score=20.24 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHccCCCCCCCCCCHHHHHHHHHHHHhCCCCc
Q 046285 116 LKALGLKGRSEPYVTEDELKLMLRGAELSGAIE 148 (198)
Q Consensus 116 ~r~~g~~~~~~~~~s~eel~~lv~~~~~~g~l~ 148 (198)
+|.|... ......|.+|++..++.-.++|.++
T Consensus 21 Lkmf~~~-~~~~~~s~~eL~~fL~~lv~e~~L~ 52 (60)
T PF08672_consen 21 LKMFPKD-PGGYDISLEELQEFLDRLVEEGKLE 52 (60)
T ss_dssp HHHH-GG-G--TT--HHHHHHHHHHHHHTTSEE
T ss_pred HHhccCC-CCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4555222 2334578999999999888888764
No 141
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.35 E-value=1.3e+02 Score=27.55 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhCCC------C-cHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGA------I-EEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~------l-~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+|+.++-..+.. ..|. . .++.+..++.+.+.+ ..|+ ++.+.++.+++++++++.+.+++++
T Consensus 63 ~~vt~~~lA~Ama~--aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi--~dpvtV~pd~tV~dA~~lm~~~~~~ 132 (505)
T PLN02274 63 DTVTESDMAIAMAA--LGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFV--SDPVVKSPSSTISSLDELKASRGFS 132 (505)
T ss_pred cccchHHHHHHHHh--CCCeEEEcCCCCHHHHHHHHHHhhccc-----cccc--CCCeeeCCCCcHHHHHHHHHhcCCc
Confidence 46777776544432 2221 2 345577888888652 2265 5778899999999999999888764
No 142
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=25.04 E-value=4.8e+02 Score=23.03 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=25.8
Q ss_pred CcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 163 DTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 163 ~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
+..++++|.| ...++.++++.++++.+++++
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~ 284 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLDDLLRDFQEKK 284 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcC
Confidence 3457788865 678999999999999999875
No 143
>PLN02759 Formate--tetrahydrofolate ligase
Probab=24.28 E-value=18 Score=33.76 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=35.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccc
Q 046285 119 LGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMT 171 (198)
Q Consensus 119 ~g~~~~~~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~ 171 (198)
+|+...+...+|+||++.+.+.. +|+ .+-..+++++++|+..|+|-+
T Consensus 201 l~i~~~~p~~lt~~e~~~~~~L~-----IDp-~~I~w~RvlD~NDR~LR~I~v 247 (637)
T PLN02759 201 LGISKTDPDELTPEERKKFARLD-----IDP-ASITWRRVMDVNDRFLRKITV 247 (637)
T ss_pred hccCcCCccccCHHHhhhhhccC-----cCc-ceeEEEeeccccchhhhceee
Confidence 47764444579999999887664 554 345689999999999999965
No 144
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=24.00 E-value=1.3e+02 Score=20.11 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhh
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVL 159 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~ 159 (198)
++.+++.....|.+++.|++++..+-
T Consensus 76 l~~~~~ia~aDG~~~~~E~~~l~~l~ 101 (104)
T cd07177 76 LAALWEVALADGELDPEERALLRRLA 101 (104)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44566777889999999999998764
No 145
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=23.87 E-value=66 Score=19.00 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=13.2
Q ss_pred CCcHHHHHHHHHhhccCCcccccc
Q 046285 146 AIEEEEQDMIENVLEIKDTHVREV 169 (198)
Q Consensus 146 ~l~~~E~~~i~~v~~~~~~~v~ei 169 (198)
.+++.|+++|.-.+ +.+.+..||
T Consensus 4 ~L~~~er~vi~~~y-~~~~t~~eI 26 (50)
T PF04545_consen 4 QLPPREREVIRLRY-FEGLTLEEI 26 (50)
T ss_dssp TS-HHHHHHHHHHH-TST-SHHHH
T ss_pred hCCHHHHHHHHHHh-cCCCCHHHH
Confidence 36777777777776 555555444
No 146
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=23.44 E-value=3.3e+02 Score=20.63 Aligned_cols=73 Identities=15% Similarity=0.022 Sum_probs=35.6
Q ss_pred hccChHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 046285 6 EKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAV 80 (198)
Q Consensus 6 ~~~~~a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~l~lifgEilPk~la~ 80 (198)
|+|.||-+ ..+.+=|+.+.+..+++...+. ..+.+.-.....-.+..+....+...+...++.|++-|-.+|.
T Consensus 31 e~gsRA~r-~A~~elPEAl~till~~ll~~~-T~G~~~~lm~~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg 103 (144)
T PF01350_consen 31 EPGSRAYR-MALEELPEALETILLVVLLGVM-TLGVFWFLMRRKGIGRMSLGMLVMAVAGYLLWMGGVPPGQIAG 103 (144)
T ss_pred CCCcHHHH-HHHHhCcHHHHHHHHHHHHHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHhcCCcHHHhHH
Confidence 45555533 2245568877777766443322 2222211110000112233444445556668888888777663
No 147
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.02 E-value=1.6e+02 Score=17.65 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCccc
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHV 166 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v 166 (198)
.+|.+++..|-+.-......+.++.+-|..-+.++...|
T Consensus 6 ~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V 44 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQV 44 (57)
T ss_dssp SSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 467787777766666677788888888888887766555
No 148
>PHA03231 glycoprotein BALF4; Provisional
Probab=22.96 E-value=3.3e+02 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHh
Q 046285 127 PYVTEDELKLMLRGAEL 143 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~ 143 (198)
+..+.||.+.|+..-+.
T Consensus 766 ~~~~~eea~~mL~~m~~ 782 (829)
T PHA03231 766 DEYKLEEAREMLLAMHL 782 (829)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35788888888765444
No 149
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=22.84 E-value=2.3e+02 Score=23.60 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhCC-----CCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 127 PYVTEDELKLMLRGAELSG-----AIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g-----~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..++.+++..++...+..| .+...+...|++++|.+ +.-||+|.. .|.+|+.+.+....|
T Consensus 50 g~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~G---A~GIivP~V--------~saeeA~~~V~a~rY 114 (267)
T PRK10128 50 APNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIG---AQTLLIPMV--------DTAEQARQVVSATRY 114 (267)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCC---CCeeEecCc--------CCHHHHHHHHHhcCC
Confidence 4578999999998888777 34556778999999887 567787765 477888887777665
No 150
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=22.74 E-value=3e+02 Score=19.82 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q 046285 62 VMTVAILLLT 71 (198)
Q Consensus 62 i~t~l~lifg 71 (198)
+.+.+.++||
T Consensus 63 i~~Gi~~~fG 72 (108)
T COG3838 63 IAIGIMLIFG 72 (108)
T ss_pred HHHHHHHHHh
Confidence 3444556666
No 151
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=21.76 E-value=1.4e+02 Score=20.36 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLE 160 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~ 160 (198)
++.+++.+...|.+++.|+++++.+-+
T Consensus 81 ~~~~~~ia~aDG~~~~~E~~~L~~l~~ 107 (111)
T cd07176 81 FAVAVDIAAADGEVDPEERAVLEKLYR 107 (111)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 445667778899999999999987643
No 152
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=21.32 E-value=2.5e+02 Score=20.58 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=23.0
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRGAE 142 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~~~ 142 (198)
.+..+++.+|+++.. -..+|++|+..+.+.-.
T Consensus 29 ~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~ 61 (122)
T CHL00137 29 SAKEILEKANIDPDIRTKDLTDEQISALREIIE 61 (122)
T ss_pred HHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHH
Confidence 456777788988753 45789999887766543
No 153
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.45 E-value=1.7e+02 Score=22.01 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHH--------HhCCCCcHHHHHHHHHhhccCCccccccccc
Q 046285 128 YVTEDELKLMLRGA--------ELSGAIEEEEQDMIENVLEIKDTHVREVMTP 172 (198)
Q Consensus 128 ~~s~eel~~lv~~~--------~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~P 172 (198)
.+|++|++.+++.- .+.|.-...-++++.++= ...|+|.||
T Consensus 42 ~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~r----~~~R~VtVP 90 (139)
T PF07128_consen 42 NLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREVR----RAARQVTVP 90 (139)
T ss_pred CCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHHH----hcCCccccc
Confidence 46788887776521 345554555567777744 223666665
No 154
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.44 E-value=1.6e+02 Score=26.88 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHhCC--C----C-cHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSG--A----I-EEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g--~----l-~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.++|+.++-..+. +..| . . -+++.+.++.+-+.++ .|+ .+.+.++.+++++++++.+.+++++
T Consensus 59 ~~vt~~~ma~a~a--~~GglGvi~~~~~~e~~~~~v~kvk~~e~-----g~i--~dpvtv~pd~tv~eA~~lm~~~~~s 128 (495)
T PTZ00314 59 DTVTEHKMAIAMA--LMGGIGVIHNNCSIEEQVEEVRKVKRFEN-----GFI--MDPYVLSPNHTVADVLEIKEKKGFS 128 (495)
T ss_pred cccccHHHHHHHH--HCCCeEEecCCCCHHHHHHHHhhcccccc-----ccc--cCCeecCCCCCHHHHHHHHHHcCCc
Confidence 4677777654332 2222 1 1 2356777887776655 554 3446899999999999999988764
No 155
>PTZ00370 STEVOR; Provisional
Probab=20.30 E-value=1e+02 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=12.7
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHH
Q 046285 78 IAVHHATDVVRFVVRPVAWLSLILY 102 (198)
Q Consensus 78 la~~~p~~i~~~~a~~l~~~~~l~~ 102 (198)
.++-+|.-++....-.+.++.+++|
T Consensus 251 saaF~Pygiaalvllil~vvliilY 275 (296)
T PTZ00370 251 SSAFYPYGIAALVLLILAVVLIILY 275 (296)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHH
Confidence 3444566665555444445444444
Done!