Query 046285
Match_columns 198
No_of_seqs 117 out of 1312
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oi8_A Uncharacterized protein 99.4 4.5E-13 1.5E-17 101.1 7.6 71 128-198 2-72 (156)
2 3lhh_A CBS domain protein; str 99.2 2.7E-12 9.3E-17 98.3 2.9 72 127-198 5-76 (172)
3 3ocm_A Putative membrane prote 98.9 6.9E-10 2.4E-14 85.3 5.0 62 137-198 9-70 (173)
4 3lv9_A Putative transporter; C 98.8 3.8E-09 1.3E-13 78.2 3.6 56 143-198 2-57 (148)
5 3oco_A Hemolysin-like protein 98.3 6E-08 2E-12 72.2 0.1 52 147-198 3-54 (153)
6 3t4n_C Nuclear protein SNF4; C 98.3 1.2E-07 4.3E-12 78.6 0.8 56 143-198 8-64 (323)
7 2zy9_A Mg2+ transporter MGTE; 97.9 2.4E-05 8.2E-10 69.1 7.6 67 128-196 110-185 (473)
8 3kxr_A Magnesium transporter, 97.9 4.1E-05 1.4E-09 60.0 7.7 59 129-195 25-83 (205)
9 2v8q_E 5'-AMP-activated protei 97.8 3E-06 1E-10 70.4 0.7 60 137-198 10-69 (330)
10 2yvy_A MGTE, Mg2+ transporter 97.7 5.8E-05 2E-09 61.6 5.7 66 129-196 91-165 (278)
11 2oux_A Magnesium transporter; 96.2 0.0068 2.3E-07 49.5 5.9 49 145-195 118-166 (286)
12 4fxs_A Inosine-5'-monophosphat 96.0 0.0032 1.1E-07 55.8 3.1 66 126-198 51-121 (496)
13 3k2v_A Putative D-arabinose 5- 96.0 0.0021 7.2E-08 46.8 1.4 35 164-198 28-62 (149)
14 3org_A CMCLC; transporter, tra 95.8 0.003 1E-07 57.5 2.0 37 162-198 451-488 (632)
15 1zfj_A Inosine monophosphate d 95.8 0.0053 1.8E-07 54.0 3.3 65 127-198 53-122 (491)
16 3kh5_A Protein MJ1225; AMPK, A 95.4 0.0015 5E-08 52.3 -1.5 66 128-198 51-116 (280)
17 3fhm_A Uncharacterized protein 94.7 0.011 3.8E-07 43.7 1.8 40 159-198 19-59 (165)
18 3ddj_A CBS domain-containing p 94.7 0.0052 1.8E-07 49.7 -0.1 62 128-198 64-125 (296)
19 3fv6_A YQZB protein; CBS domai 94.1 0.045 1.5E-06 40.0 3.9 48 151-198 65-115 (159)
20 2cu0_A Inosine-5'-monophosphat 93.7 0.023 8E-07 50.0 2.0 65 127-198 56-125 (486)
21 3l2b_A Probable manganase-depe 93.6 0.024 8.1E-07 44.7 1.6 37 161-198 182-218 (245)
22 4avf_A Inosine-5'-monophosphat 93.0 0.035 1.2E-06 49.0 1.9 66 126-198 50-120 (490)
23 1me8_A Inosine-5'-monophosphat 92.1 0.054 1.9E-06 47.9 1.9 64 127-198 60-129 (503)
24 2rc3_A CBS domain; in SITU pro 91.7 0.16 5.3E-06 35.7 3.7 44 152-197 58-105 (135)
25 1pbj_A Hypothetical protein; s 91.7 0.092 3.2E-06 36.2 2.4 37 160-198 61-97 (125)
26 4fry_A Putative signal-transdu 91.2 0.13 4.4E-06 37.2 2.9 46 151-198 61-110 (157)
27 1vr9_A CBS domain protein/ACT 91.1 0.018 6.2E-07 44.7 -2.0 69 128-198 29-104 (213)
28 3usb_A Inosine-5'-monophosphat 89.8 0.25 8.6E-06 43.8 3.9 65 127-198 76-145 (511)
29 1pvm_A Conserved hypothetical 89.2 0.42 1.4E-05 35.6 4.3 46 151-198 58-107 (184)
30 2yzi_A Hypothetical protein PH 89.0 0.52 1.8E-05 33.0 4.5 45 152-198 57-104 (138)
31 2uv4_A 5'-AMP-activated protei 88.1 0.59 2E-05 33.5 4.4 36 162-197 85-124 (152)
32 2nyc_A Nuclear protein SNF4; b 87.8 0.42 1.4E-05 33.6 3.4 37 161-197 74-114 (144)
33 1o50_A CBS domain-containing p 87.4 0.4 1.4E-05 34.6 3.1 35 160-197 92-126 (157)
34 3fhm_A Uncharacterized protein 87.1 0.6 2.1E-05 34.0 4.0 37 160-198 89-125 (165)
35 3lfr_A Putative metal ION tran 87.0 0.26 8.7E-06 34.9 1.8 34 161-197 67-100 (136)
36 3kpb_A Uncharacterized protein 86.9 0.53 1.8E-05 32.1 3.4 35 162-198 60-94 (122)
37 3lhh_A CBS domain protein; str 86.8 1.1 3.7E-05 33.0 5.3 44 151-197 94-137 (172)
38 2emq_A Hypothetical conserved 86.0 0.77 2.6E-05 32.8 4.0 34 161-196 80-113 (157)
39 2o16_A Acetoin utilization pro 85.9 0.83 2.8E-05 33.1 4.2 35 161-197 75-109 (160)
40 4gqw_A CBS domain-containing p 85.8 0.36 1.2E-05 34.2 2.1 36 161-198 82-117 (152)
41 1yav_A Hypothetical protein BS 85.7 0.44 1.5E-05 34.4 2.5 34 161-196 83-116 (159)
42 3lqn_A CBS domain protein; csg 85.3 0.92 3.1E-05 32.2 4.1 44 151-196 66-117 (150)
43 1y5h_A Hypothetical protein RV 85.1 0.4 1.4E-05 33.4 2.0 35 161-197 71-105 (133)
44 3lv9_A Putative transporter; C 84.8 1.2 4E-05 31.7 4.4 43 152-197 76-118 (148)
45 3oco_A Hemolysin-like protein 84.7 1.4 4.9E-05 31.5 4.9 44 151-197 73-116 (153)
46 3jtf_A Magnesium and cobalt ef 84.2 0.9 3.1E-05 31.6 3.5 33 162-197 67-99 (129)
47 2ef7_A Hypothetical protein ST 84.1 0.62 2.1E-05 32.3 2.6 34 162-197 65-98 (133)
48 3i8n_A Uncharacterized protein 83.5 1.2 4E-05 30.9 3.9 33 162-197 70-102 (130)
49 3pc3_A CG1753, isoform A; CBS, 83.5 0.44 1.5E-05 42.1 1.9 36 161-198 381-417 (527)
50 2j9l_A Chloride channel protei 82.8 1.3 4.6E-05 32.4 4.2 35 161-197 105-139 (185)
51 2rih_A Conserved protein with 82.5 1.9 6.3E-05 30.2 4.7 33 162-197 69-101 (141)
52 3k2v_A Putative D-arabinose 5- 82.4 1.1 3.9E-05 31.8 3.5 37 160-198 91-127 (149)
53 3nqr_A Magnesium and cobalt ef 81.1 0.99 3.4E-05 31.2 2.7 33 162-197 67-99 (127)
54 4esy_A CBS domain containing m 80.9 0.57 2E-05 34.4 1.4 35 161-197 102-136 (170)
55 3oi8_A Uncharacterized protein 80.5 0.88 3E-05 32.8 2.4 33 162-197 101-133 (156)
56 1me8_A Inosine-5'-monophosphat 80.1 0.35 1.2E-05 42.7 0.0 36 162-197 159-194 (503)
57 3t4n_C Nuclear protein SNF4; C 79.5 1.4 4.7E-05 35.6 3.4 37 161-197 253-293 (323)
58 3hf7_A Uncharacterized CBS-dom 78.3 1.5 5.1E-05 30.5 3.0 33 162-197 68-100 (130)
59 2p9m_A Hypothetical protein MJ 77.3 0.94 3.2E-05 31.5 1.6 34 161-196 70-103 (138)
60 4avf_A Inosine-5'-monophosphat 76.6 0.51 1.8E-05 41.5 0.0 36 162-197 145-180 (490)
61 3ctu_A CBS domain protein; str 76.4 1.5 5.2E-05 31.3 2.6 33 162-196 84-116 (156)
62 2yzq_A Putative uncharacterize 75.3 1.5 5.1E-05 34.5 2.4 36 161-198 218-253 (282)
63 3sl7_A CBS domain-containing p 73.7 1.4 4.8E-05 32.0 1.8 37 160-198 94-130 (180)
64 1vrd_A Inosine-5'-monophosphat 73.3 0.7 2.4E-05 40.4 0.0 36 162-197 153-188 (494)
65 3kxr_A Magnesium transporter, 73.2 2.6 8.9E-05 32.2 3.3 35 161-197 113-147 (205)
66 3usb_A Inosine-5'-monophosphat 72.3 1.7 5.7E-05 38.4 2.2 37 160-197 171-207 (511)
67 4fxs_A Inosine-5'-monophosphat 71.8 0.61 2.1E-05 41.1 -0.7 37 161-197 146-182 (496)
68 2uv4_A 5'-AMP-activated protei 69.2 1.7 5.8E-05 31.0 1.3 34 161-198 20-53 (152)
69 2yzq_A Putative uncharacterize 68.2 2.9 9.8E-05 32.7 2.6 35 162-198 58-92 (282)
70 3fio_A A cystathionine beta-sy 67.0 5.7 0.00019 23.9 3.4 23 176-198 2-24 (70)
71 3gby_A Uncharacterized protein 64.5 1.9 6.5E-05 29.7 0.7 32 164-197 68-99 (128)
72 2yvy_A MGTE, Mg2+ transporter 64.1 3.9 0.00013 32.6 2.6 35 161-197 196-230 (278)
73 2pfi_A Chloride channel protei 63.5 3.6 0.00012 29.2 2.2 37 162-198 82-122 (164)
74 3ghd_A A cystathionine beta-sy 63.4 7.3 0.00025 24.3 3.4 24 175-198 1-24 (70)
75 3k6e_A CBS domain protein; str 62.4 2.7 9.4E-05 30.4 1.3 34 161-196 83-116 (156)
76 1m0k_A BR, bacteriorhodopsin; 61.4 60 0.002 25.8 9.7 22 87-108 183-204 (262)
77 1vrd_A Inosine-5'-monophosphat 60.7 3.2 0.00011 36.2 1.6 42 150-198 86-127 (494)
78 2zy9_A Mg2+ transporter MGTE; 60.4 4.8 0.00016 35.0 2.7 41 152-197 210-250 (473)
79 3ddj_A CBS domain-containing p 59.9 4.1 0.00014 32.2 2.1 45 152-198 143-188 (296)
80 2qrd_G Protein C1556.08C; AMPK 59.8 4.7 0.00016 32.5 2.4 36 162-197 249-288 (334)
81 2ei4_A AR 2, archaerhodopsin-2 58.7 65 0.0022 25.4 10.6 22 87-108 175-196 (253)
82 2l6x_A GPR, green-light absorb 58.4 24 0.00083 27.8 6.3 22 88-109 169-190 (243)
83 3ug9_A Archaeal-type opsin 1, 57.4 82 0.0028 26.1 11.3 42 68-109 206-249 (333)
84 3kh5_A Protein MJ1225; AMPK, A 57.2 5.9 0.0002 30.7 2.5 45 152-198 134-180 (280)
85 3pc3_A CG1753, isoform A; CBS, 56.7 9.4 0.00032 33.5 4.0 44 151-196 435-481 (527)
86 2oux_A Magnesium transporter; 55.6 4.9 0.00017 32.2 1.8 35 161-197 198-232 (286)
87 1xio_A Anabaena sensory rhodop 55.3 77 0.0026 25.2 10.5 41 68-109 145-186 (261)
88 2qrd_G Protein C1556.08C; AMPK 54.4 5.3 0.00018 32.2 1.9 32 167-198 110-141 (334)
89 1jcn_A Inosine monophosphate d 52.6 2.1 7.3E-05 37.6 -0.9 36 162-197 171-206 (514)
90 2jaf_A Halorhodopsin, HR; chro 52.0 90 0.0031 25.0 12.2 39 68-108 178-216 (274)
91 1zfj_A Inosine monophosphate d 51.8 11 0.00036 32.7 3.5 35 162-197 150-184 (491)
92 4h33_A LMO2059 protein; bilaye 50.7 17 0.00058 25.9 3.9 22 58-79 48-69 (137)
93 4af0_A Inosine-5'-monophosphat 49.3 3.6 0.00012 36.7 0.0 33 162-196 198-230 (556)
94 3ocm_A Putative membrane prote 47.5 18 0.00063 26.3 3.8 42 152-197 89-130 (173)
95 3org_A CMCLC; transporter, tra 46.8 13 0.00043 33.6 3.2 31 165-197 569-599 (632)
96 2v8q_E 5'-AMP-activated protei 44.5 12 0.0004 30.1 2.4 35 163-197 258-296 (330)
97 2cu0_A Inosine-5'-monophosphat 44.3 4.7 0.00016 35.1 0.0 34 162-197 148-181 (486)
98 1jcn_A Inosine monophosphate d 41.8 9.7 0.00033 33.3 1.6 33 164-198 108-140 (514)
99 3qbg_A Halorhodopsin; membrane 41.6 1.4E+02 0.0047 24.1 11.4 24 85-108 208-231 (291)
100 2ecc_A Homeobox and leucine zi 40.3 68 0.0023 20.5 5.2 41 127-167 8-48 (76)
101 3h0d_A CTSR; protein DNA compl 40.2 48 0.0017 24.4 4.9 33 127-159 90-122 (155)
102 3ddl_A Xanthorhodopsin; carote 39.7 88 0.003 25.0 7.0 34 75-109 175-210 (273)
103 2eo2_A Adult MALE hypothalamus 30.9 52 0.0018 20.9 3.3 23 118-140 39-61 (71)
104 3u5c_S 40S ribosomal protein S 28.9 58 0.002 23.7 3.8 31 111-141 42-73 (146)
105 3a03_A T-cell leukemia homeobo 27.7 90 0.0031 18.0 4.0 39 129-167 4-42 (56)
106 2lky_A Uncharacterized protein 26.8 39 0.0013 23.5 2.4 31 128-158 40-71 (112)
107 2h1k_A IPF-1, pancreatic and d 25.5 1.1E+02 0.0038 18.1 4.7 41 127-167 8-48 (63)
108 2vi6_A Homeobox protein nanog; 25.3 1.1E+02 0.0038 18.0 4.3 41 127-167 8-48 (62)
109 2ou3_A Tellurite resistance pr 24.9 77 0.0026 22.8 3.9 37 134-170 33-72 (161)
110 2xzm_M RPS18E; ribosome, trans 24.3 75 0.0026 23.3 3.7 30 111-140 42-72 (155)
111 3qap_A Sensory rhodopsin-2; ph 23.6 2.6E+02 0.0088 21.6 9.0 40 67-108 139-180 (239)
112 1akh_A Protein (mating-type pr 23.5 1.2E+02 0.004 17.7 4.0 41 127-167 10-50 (61)
113 1wwp_A Hypothetical protein TT 23.4 44 0.0015 23.0 2.2 34 135-168 57-90 (119)
114 1ig7_A Homeotic protein MSX-1; 23.0 1.2E+02 0.004 17.5 4.3 40 128-167 6-45 (58)
115 3a02_A Homeobox protein arista 22.5 1.2E+02 0.0043 17.6 4.0 40 128-167 5-44 (60)
116 3r8n_M 30S ribosomal protein S 21.6 1E+02 0.0035 21.3 3.8 31 111-141 28-59 (114)
117 3am6_A Rhodopsin-2, AR2; seven 20.7 2.9E+02 0.0099 21.2 6.8 18 91-108 170-187 (229)
118 2kvc_A Putative uncharacterize 20.5 40 0.0014 23.1 1.4 22 128-149 38-59 (103)
119 1jgg_A Segmentation protein EV 20.5 1.4E+02 0.0047 17.4 4.3 40 128-167 7-46 (60)
120 2ecb_A Zinc fingers and homeob 20.4 1.9E+02 0.0064 18.8 4.9 41 127-167 16-56 (89)
No 1
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.41 E-value=4.5e-13 Score=101.07 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+|+|||+.+++.++++|.++++|+++++++++|++.+|+|+|+||+++++++.++++.++++.+.+++|+
T Consensus 2 ~~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~ 72 (156)
T 3oi8_A 2 NASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHS 72 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999875
No 2
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.23 E-value=2.7e-12 Score=98.34 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.+|+||++.+++.++++|.++++|++++++++++++.+|+|+|+|+.++++++.++++.++++.+.+++|+
T Consensus 5 ~~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~ 76 (172)
T 3lhh_A 5 DNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHS 76 (172)
T ss_dssp --------------------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999885
No 3
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.94 E-value=6.9e-10 Score=85.26 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 137 MLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 137 lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+...++++|.++++|+++++++++|++.+|+++|+|++++++++.+++++++++.+.+++||
T Consensus 9 ~~~~~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~ 70 (173)
T 3ocm_A 9 LPSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHS 70 (173)
T ss_dssp ---------CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCS
T ss_pred HHHhHHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCC
Confidence 44567888999999999999999999999999999999999999999999999999999986
No 4
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.76 E-value=3.8e-09 Score=78.24 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=38.9
Q ss_pred hCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 143 LSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 143 ~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++|.++++|++++++++++++.+|+|+|+||+++++++.+++++++++.+.+++++
T Consensus 2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~ 57 (148)
T 3lv9_A 2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVT 57 (148)
T ss_dssp ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCS
T ss_pred CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCC
Confidence 56889999999999999999999999999999999999999999999999999885
No 5
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.34 E-value=6e-08 Score=72.24 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 147 IEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 147 l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++++|++++++++++++.+|+++|+||+++++++.++++.++++.+.+++++
T Consensus 3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~ 54 (153)
T 3oco_A 3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYS 54 (153)
T ss_dssp -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCS
T ss_pred cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCC
Confidence 6788999999999999999999999999999999999999999999999875
No 6
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=98.28 E-value=1.2e-07 Score=78.57 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=52.0
Q ss_pred hCCCCcHHHHHHHHHhhcc-CCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 143 LSGAIEEEEQDMIENVLEI-KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 143 ~~g~l~~~E~~~i~~v~~~-~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.|.++++|+++++++++| ++++|+|+|+||.++++++.++|+.++++.+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~ 64 (323)
T 3t4n_C 8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCS
T ss_pred CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCc
Confidence 3445788999999999999 9999999999999999999999999999999999975
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.90 E-value=2.4e-05 Score=69.06 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHhC---------CCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 128 YVTEDELKLMLRGAELS---------GAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~---------g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.+++||..+++++..++ +.++++|++++++++++.+.+|+++|+| ++++++.+++++++++.+++++
T Consensus 110 ~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~ 185 (473)
T 2zy9_A 110 ELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAA 185 (473)
T ss_dssp HSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhcc
Confidence 46889999999998888 8999999999999999999999999997 8999999999999999999864
No 8
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.87 E-value=4.1e-05 Score=60.03 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhC
Q 046285 129 VTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH 195 (198)
Q Consensus 129 ~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~ 195 (198)
+.+++...++.. ++++|++++++++++.+.+|+++|+| ++++++.++|++++++.+++.
T Consensus 25 l~~~~~~~~l~~------l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~ 83 (205)
T 3kxr_A 25 LPESFTDRALAQ------MGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRI 83 (205)
T ss_dssp SCHHHHHHHHHH------SCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHC
T ss_pred CCHHHHHHHHHc------CCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHHHHHHHHHhh
Confidence 455555555543 79999999999999999999999988 899999999999999999984
No 9
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=97.83 E-value=3e-06 Score=70.40 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 137 MLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 137 lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+...++++|.+++.+++.+++. |++++|+|+|+|+.++++++.++++.++++.+.+++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~ 69 (330)
T 2v8q_E 10 PAPENEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVR 69 (330)
T ss_dssp -------------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCS
T ss_pred CCCCChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCc
Confidence 3445667777877888888888 67899999999999999999999999999999999985
No 10
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.65 E-value=5.8e-05 Score=61.63 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhC---------CCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 129 VTEDELKLMLRGAELS---------GAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 129 ~s~eel~~lv~~~~~~---------g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
++.++...+++...++ |.++.++++++.+++.+.+.+|+++|+| ++++++.+++++++++.+++++
T Consensus 91 l~~d~~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~ 165 (278)
T 2yvy_A 91 LSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAA 165 (278)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHHHHHHHHHHcc
Confidence 5678888888877776 7899999999999999999999999998 8999999999999999999874
No 11
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=96.24 E-value=0.0068 Score=49.54 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhC
Q 046285 145 GAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH 195 (198)
Q Consensus 145 g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~ 195 (198)
+.++.+|+..+.+++.+.+.+|+++|+| ++++++.+++++++++.++++
T Consensus 118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~ 166 (286)
T 2oux_A 118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQ 166 (286)
T ss_dssp HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHc
Confidence 3588899999999999999999999987 799999999999999999987
No 12
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.04 E-value=0.0032 Score=55.78 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-----cHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 126 EPYVTEDELKLMLRGAELSGAI-----EEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 126 ~~~~s~eel~~lv~~~~~~g~l-----~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
...+|++++...+.....-|.+ .+++.++++++ ++++++|+ +++++++.+++++|+++.+.+++||
T Consensus 51 MdtVTe~~ma~a~a~~GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s 121 (496)
T 4fxs_A 51 MDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIADVMELTHYHGFA 121 (496)
T ss_dssp CTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCC
T ss_pred cchhhHHHHHHHHHHcCCcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHHHHHHHHHHcCCc
Confidence 4568999998777665444455 67889999999 67789998 6889999999999999999999986
No 13
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=95.97 E-value=0.0021 Score=46.82 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=32.8
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++|+|+|+|+.++..++.++++.++++.+.+++++
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~ 62 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLG 62 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCc
Confidence 59999999999999999999999999999998864
No 14
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=95.82 E-value=0.003 Score=57.53 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=34.9
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHH-hCCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWL-THQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~-~~~~S 198 (198)
++.+|+|+|+||+++..++.+++++|+.+.+. +++|+
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~ 488 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRL 488 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCC
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcc
Confidence 78999999999999999999999999999999 78875
No 15
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=95.76 E-value=0.0053 Score=53.99 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCc-----HHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIE-----EEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~-----~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+|++|+...+..+...|.+. +++++++++++++ +++|+| ++++++.+++++++++.+.+++++
T Consensus 53 ~~vt~~eLa~av~~~Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~ 122 (491)
T 1zfj_A 53 DTVTGSKMAIAIARAGGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVSEAEELMQRYRIS 122 (491)
T ss_dssp TTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHHHHHHHHHHTTCS
T ss_pred hhccHHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHHHHHHHHHHcCCC
Confidence 3678899998887765555565 7889999998875 679997 888999999999999999998875
No 16
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=95.42 E-value=0.0015 Score=52.25 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+|.+|+...+..+...+.++ .....++++..+.+|+++|+| ++.+++.++++.++++.+.+++++
T Consensus 51 ivt~~di~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~ 116 (280)
T 3kh5_A 51 IITSMDIVDFMGGGSKYNLIR---EKHERNFLAAINEPVREIMEE--NVITLKENADIDEAIETFLTKNVG 116 (280)
T ss_dssp EEEHHHHHHHTTTSGGGHHHH---TTSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCS
T ss_pred EEEHHHHHHHhcccchhhhhh---hccccchhHHhhhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCC
Confidence 367888877664433322221 112334455568999999997 889999999999999999999875
No 17
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=94.74 E-value=0.011 Score=43.70 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=36.1
Q ss_pred hccCCcccccccccc-cceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 159 LEIKDTHVREVMTPL-VDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 159 ~~~~~~~v~eiM~PR-~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+...+|+|+|+|+ .++..++.++++.++++.+.+++++
T Consensus 19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~ 59 (165)
T 3fhm_A 19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIG 59 (165)
T ss_dssp CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCS
T ss_pred HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCC
Confidence 458889999999997 8899999999999999999998764
No 18
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=94.70 E-value=0.0052 Score=49.71 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+|.+|+...+..+... .+...+.+++.+.+|+++|+| ++..++.++++.++++.+.+++++
T Consensus 64 ivT~~Di~~~~~~~~~~-------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~ 125 (296)
T 3ddj_A 64 LLTTRDLLSTVESYCKD-------SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFG 125 (296)
T ss_dssp EEEHHHHHGGGTTCC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCS
T ss_pred EEeHHHHHHHhcccccc-------cccchhhHHHhcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCC
Confidence 35777776554322111 345667777889999999997 788999999999999999998875
No 19
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=94.08 E-value=0.045 Score=40.03 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=39.4
Q ss_pred HHHHHHHhh---ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 151 EQDMIENVL---EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 151 E~~~i~~v~---~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++++...+ ...+.+|+++|+|+.++..++.++++.++++.+.+++++
T Consensus 65 ~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~ 115 (159)
T 3fv6_A 65 RKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQID 115 (159)
T ss_dssp HHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCc
Confidence 345555442 457889999999999999999999999999999988763
No 20
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=93.72 E-value=0.023 Score=49.98 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCc-----HHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIE-----EEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~-----~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+|++|+...+......|.+. +++++++++++++++ +|+ .++++++.+++++++++.+.+++||
T Consensus 56 ~~vt~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~ea~~~~~~~~~~ 125 (486)
T 2cu0_A 56 DTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAER-----LIV--EDVITIAPDETVDFALFLMEKHGID 125 (486)
T ss_dssp TTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred eeecHHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhh-----ccc--cCceEECCCCCHHHHHHHHHHcCCc
Confidence 3578888887776544334453 678999999998755 677 5899999999999999999998875
No 21
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=93.60 E-value=0.024 Score=44.72 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=33.6
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+.+|+|+|+| +++..++.+++++++++.+.+++|+
T Consensus 182 ~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~ 218 (245)
T 3l2b_A 182 VQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYS 218 (245)
T ss_dssp GGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCS
T ss_pred hcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCc
Confidence 346789999999 8999999999999999999999875
No 22
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=93.00 E-value=0.035 Score=48.98 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCc-----HHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 126 EPYVTEDELKLMLRGAELSGAIE-----EEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 126 ~~~~s~eel~~lv~~~~~~g~l~-----~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
...+|++++...+.....-|.+. +++.++++++ ++++++|+ ++.++++.+++++|+++.+.+++||
T Consensus 50 M~tVTe~~lA~ala~~GGiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s 120 (490)
T 4avf_A 50 MDTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKV-----KKHETAIV--RDPVTVTPSTKIIELLQMAREYGFS 120 (490)
T ss_dssp CTTTCSHHHHHHHHHHTSEEEECCSSCHHHHHHHHHHH-----HHCCC------------------------------
T ss_pred hhhhCHHHHHHHHHHcCCCccccCCCCHHHHHHHhhhh-----cccccCcc--cCceEeCCCCcHHHHHHHHHHhCCC
Confidence 34689999987776654444444 6778888888 55788898 4788999999999999999999886
No 23
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=92.11 E-value=0.054 Score=47.89 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-----cHHHHHHHHHhhccCCcccccc-cccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAI-----EEEEQDMIENVLEIKDTHVREV-MTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l-----~~~E~~~i~~v~~~~~~~v~ei-M~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+|++++...+......|.+ .+++.++++++.. .|+ |+| ++++++.+++++|+++.+.+++||
T Consensus 60 ~~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s 129 (503)
T 1me8_A 60 QSVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFADVLAISQRTTHN 129 (503)
T ss_dssp TTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHT------TTC------------------------------
T ss_pred hhhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHHHHHHHHHHcCce
Confidence 457888987766543222222 3577888887765 355 988 899999999999999999999875
No 24
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=91.73 E-value=0.16 Score=35.71 Aligned_cols=44 Identities=30% Similarity=0.337 Sum_probs=35.4
Q ss_pred HHHHHHhh----ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 152 QDMIENVL----EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 152 ~~~i~~v~----~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+++++.+. ...+.+++++|+| +...++.++++.++++.+.++++
T Consensus 58 ~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~ 105 (135)
T 2rc3_A 58 RDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRV 105 (135)
T ss_dssp HHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCC
Confidence 34554443 3568899999987 67889999999999999998875
No 25
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=91.70 E-value=0.092 Score=36.22 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=32.4
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+.+.+++++|.| ++..++.++++.++++.+.+++++
T Consensus 61 ~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~ 97 (125)
T 1pbj_A 61 DLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVW 97 (125)
T ss_dssp CTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCS
T ss_pred cccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCc
Confidence 4568899999987 688999999999999999988763
No 26
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=91.20 E-value=0.13 Score=37.23 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=36.5
Q ss_pred HHHHHHHhhc----cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 151 EQDMIENVLE----IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 151 E~~~i~~v~~----~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++++++.+.. ..+.+|+++|+| ++..++.++++.++++.+.+++++
T Consensus 61 ~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~ 110 (157)
T 4fry_A 61 ERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMR 110 (157)
T ss_dssp HHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCC
Confidence 3455554433 468999999997 688899999999999999998764
No 27
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=91.10 E-value=0.018 Score=44.74 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCc-------ccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDT-------HVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~-------~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..|-+|...++......+..--++...+.|++..+|. +|+++|+| ++..++.+++++++.+.+.+++++
T Consensus 29 ~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~ 104 (213)
T 1vr9_A 29 SATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEP 104 (213)
T ss_dssp TCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCS
T ss_pred CCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCC
Confidence 3466777766665433332111112335566655555 59999998 788899999999999999998864
No 28
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=89.76 E-value=0.25 Score=43.76 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCc-----HHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 127 PYVTEDELKLMLRGAELSGAIE-----EEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~-----~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+|++++...+.....-|.+. +++.+++++++. ++++|+ ++.++++.+++++|+++.+.+++||
T Consensus 76 dtvTe~~lAia~a~~GgiGvIh~~~~~~~q~~~V~~V~~-----~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s 145 (511)
T 3usb_A 76 DTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKR-----SESGVI--SDPFFLTPEHQVYDAEHLMGKYRIS 145 (511)
T ss_dssp TTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHHT-----SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCS
T ss_pred hhhcHHHHHHHHHhcCCceeecccCCHHHHHHHHHHhhc-----cccccc--cCCEEECCCCCHHHHHHHHHHcCCc
Confidence 4688999876665443334443 344556666654 335554 4788999999999999999999986
No 29
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=89.23 E-value=0.42 Score=35.62 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHHHHHHhh----ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 151 EQDMIENVL----EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 151 E~~~i~~v~----~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++++.... ...+.+++++|.| +...++.++++.++++.+.+++++
T Consensus 58 ~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~ 107 (184)
T 1pvm_A 58 ERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLE 107 (184)
T ss_dssp HHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCc
Confidence 345666554 3567899999986 678899999999999999988753
No 30
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=89.03 E-value=0.52 Score=32.98 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHHHHhhc---cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 152 QDMIENVLE---IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 152 ~~~i~~v~~---~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++++..+. ..+.+++++|.+ +...++.++++.++++.+.+++++
T Consensus 57 ~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~ 104 (138)
T 2yzi_A 57 SDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIK 104 (138)
T ss_dssp HHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCC
Confidence 345444432 457899999986 678899999999999999988753
No 31
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=88.12 E-value=0.59 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=31.9
Q ss_pred CCcccccccccc----cceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPL----VDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR----~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.|+ .++..++.++++.++++.+.++++
T Consensus 85 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 124 (152)
T 2uv4_A 85 LDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEV 124 (152)
T ss_dssp TTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTC
T ss_pred hcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCC
Confidence 467899999987 688999999999999999998875
No 32
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=87.85 E-value=0.42 Score=33.55 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=30.4
Q ss_pred cCCccccccccccc----ceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLV----DVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~----~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+++++|+++. ++..++.++++.++++.+.++++
T Consensus 74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~ 114 (144)
T 2nyc_A 74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV 114 (144)
T ss_dssp -CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTC
T ss_pred cCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCC
Confidence 45789999999874 78999999999999999998875
No 33
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=87.36 E-value=0.4 Score=34.64 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.0
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
...+.+++++|.| +..++.++++.++++.+.++++
T Consensus 92 ~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~ 126 (157)
T 1o50_A 92 RLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNI 126 (157)
T ss_dssp CCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTC
T ss_pred HHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCC
Confidence 3567899999998 7889999999999999998875
No 34
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=87.11 E-value=0.6 Score=33.99 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=32.0
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
...+.+|+++|.+ ++..++.++++.++++.+.+++++
T Consensus 89 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~ 125 (165)
T 3fhm_A 89 ASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFR 125 (165)
T ss_dssp GGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCS
T ss_pred ccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCC
Confidence 4568999999984 678899999999999999998763
No 35
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=87.01 E-value=0.26 Score=34.88 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=29.7
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+++++|.| ...++.++++.++++.+.+++.
T Consensus 67 ~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~ 100 (136)
T 3lfr_A 67 GDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHN 100 (136)
T ss_dssp GGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTC
T ss_pred CCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCC
Confidence 457789999976 7889999999999999998875
No 36
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=86.87 E-value=0.53 Score=32.10 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+..+++++|.| +...++.++++.++++.+.+++++
T Consensus 60 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~ 94 (122)
T 3kpb_A 60 NKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNIS 94 (122)
T ss_dssp TCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCS
T ss_pred cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCC
Confidence 45589999986 678899999999999999988753
No 37
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=86.80 E-value=1.1 Score=32.97 Aligned_cols=44 Identities=5% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 151 EQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 151 E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.++++....+-.+.+|+++| .+...++.++++.++++.+.+++.
T Consensus 94 ~~dl~~~~~~~~~~~v~~im---~~~~~v~~~~~l~~a~~~m~~~~~ 137 (172)
T 3lhh_A 94 AKQLLSESIAGERLELVDLV---KNCNFVPNSLSGMELLEHFRTTGS 137 (172)
T ss_dssp HHHHHHHHHTTCCCCGGGGC---BCCEEEETTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcCcccHHHHh---cCCeEeCCCCCHHHHHHHHHHcCC
Confidence 34555555544578999999 467889999999999999998874
No 38
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=86.04 E-value=0.77 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=30.3
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
..+.+++++|.| ++..++.++++.++++.+.+++
T Consensus 80 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~ 113 (157)
T 2emq_A 80 LETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHP 113 (157)
T ss_dssp GGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSS
T ss_pred hcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCC
Confidence 467899999987 7788999999999999999876
No 39
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=85.90 E-value=0.83 Score=33.09 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=30.7
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|.| ++..++.++++.++++.+.+++.
T Consensus 75 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 109 (160)
T 2o16_A 75 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKI 109 (160)
T ss_dssp -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTC
T ss_pred hcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCC
Confidence 457899999986 78999999999999999998875
No 40
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=85.79 E-value=0.36 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=30.2
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+.+|+++|.| +...++.++++.++++.+.+++++
T Consensus 82 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~ 117 (152)
T 4gqw_A 82 TNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYR 117 (152)
T ss_dssp --CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCC
T ss_pred hccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCC
Confidence 456899999997 567899999999999999998863
No 41
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=85.71 E-value=0.44 Score=34.41 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.1
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
..+.+|+++|.| ++..++.++++.++++.+.+++
T Consensus 83 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~ 116 (159)
T 1yav_A 83 LDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNG 116 (159)
T ss_dssp TTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCS
T ss_pred hccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCC
Confidence 568899999987 7788999999999999998765
No 42
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=85.34 E-value=0.92 Score=32.19 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHHHHHhh--------ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 151 EQDMIENVL--------EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 151 E~~~i~~v~--------~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
++++++... ...+.+|+++|.+ +...++.++++.++++.+.+++
T Consensus 66 ~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~ 117 (150)
T 3lqn_A 66 TAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHP 117 (150)
T ss_dssp HHHHHHHTBCSSSBCGGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhcccchhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCC
Confidence 456666554 2467899999984 6788999999999999998876
No 43
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=85.08 E-value=0.4 Score=33.36 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=30.9
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+++++|.| ++..++.++++.++++.+.++++
T Consensus 71 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~ 105 (133)
T 1y5h_A 71 PNTATAGELARD--SIYYVDANASIQEMLNVMEEHQV 105 (133)
T ss_dssp TTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTC
T ss_pred ccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCC
Confidence 357899999987 78889999999999999998875
No 44
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=84.76 E-value=1.2 Score=31.67 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 152 QDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 152 ~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++++....+-.+.+++++| .+...++.++++.++++.+.+++.
T Consensus 76 ~dl~~~~~~~~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~ 118 (148)
T 3lv9_A 76 RDLYNQKINENKIELEEIL---RDIIYISENLTIDKALERIRKEKL 118 (148)
T ss_dssp HHHHHHHHHHSCCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCccHHHhc---CCCeEECCCCCHHHHHHHHHhcCC
Confidence 4555544443488999999 357889999999999999998764
No 45
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=84.66 E-value=1.4 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 151 EQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 151 E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.++++.....-.+.+|+++| .++..++.++++.++++.+.+++.
T Consensus 73 ~~dl~~~~~~~~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~ 116 (153)
T 3oco_A 73 NYDIVRQARIDDKAKISTIM---RDIVSVPENMKVPDVMEEMSAHRV 116 (153)
T ss_dssp HHHHHHHHHHHTTSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTC
T ss_pred HHHHHhHHhcCCCCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCC
Confidence 34555544444588999999 367889999999999999998874
No 46
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=84.21 E-value=0.9 Score=31.55 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=29.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.| ...++.++++.++++.+.+++.
T Consensus 67 ~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~ 99 (129)
T 3jtf_A 67 PALDIRSLVRP---AVFIPEVKRLNVLLREFRASRN 99 (129)
T ss_dssp TTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSC
T ss_pred CCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCC
Confidence 57789999965 7789999999999999998875
No 47
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=84.10 E-value=0.62 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.| +...++.++++.++++.+.++++
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 98 (133)
T 2ef7_A 65 LETKAEEFMTA--SLITIREDSPITGALALMRQFNI 98 (133)
T ss_dssp TTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTC
T ss_pred cccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence 36889999986 78889999999999999998875
No 48
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=83.54 E-value=1.2 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.| ...++.++++.++++.+.+++.
T Consensus 70 ~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~ 102 (130)
T 3i8n_A 70 GQKQLGAVMRP---IQVVLNNTALPKVFDQMMTHRL 102 (130)
T ss_dssp TTSBHHHHSEE---CCEEETTSCHHHHHHHHHHHTC
T ss_pred CcCCHHHHhcC---CcCcCCCCcHHHHHHHHHHcCC
Confidence 46789999954 6789999999999999998764
No 49
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=83.54 E-value=0.44 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=32.0
Q ss_pred cCCcccccccccccceEEEeCC-CCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGS-ATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~-~~~~e~~~~~~~~~~S 198 (198)
|.+.+|+|+|++ +++.++.+ +++.|+++.+.+++++
T Consensus 381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~ 417 (527)
T 3pc3_A 381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVD 417 (527)
T ss_dssp TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCS
T ss_pred ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCC
Confidence 667999999984 78889999 9999999999998875
No 50
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=82.79 E-value=1.3 Score=32.39 Aligned_cols=35 Identities=3% Similarity=0.062 Sum_probs=30.7
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|.+ +...++.++++.++++.+.++++
T Consensus 105 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 139 (185)
T 2j9l_A 105 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGL 139 (185)
T ss_dssp CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTC
T ss_pred ccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCC
Confidence 467899999976 68889999999999999998875
No 51
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=82.46 E-value=1.9 Score=30.21 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=29.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.+ +...++.+ ++.++++.+.+++.
T Consensus 69 ~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~ 101 (141)
T 2rih_A 69 LDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNI 101 (141)
T ss_dssp TTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTC
T ss_pred CCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCC
Confidence 36899999986 78889999 99999999998875
No 52
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=82.45 E-value=1.1 Score=31.81 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.3
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+..+.+|+++|.+. ...++.++++.++++.+.+++++
T Consensus 91 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~ 127 (149)
T 3k2v_A 91 DMRDASIADVMTRG--GIRIRPGTLAVDALNLMQSRHIT 127 (149)
T ss_dssp CCTTCBHHHHSEES--CCEECTTCBHHHHHHHHHHHTCS
T ss_pred CcccCcHHHHcCCC--CeEECCCCCHHHHHHHHHHcCCC
Confidence 34678999999864 57899999999999999998763
No 53
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=81.07 E-value=0.99 Score=31.18 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.| ...++.++++.++++.+.+++.
T Consensus 67 ~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~ 99 (127)
T 3nqr_A 67 EAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRY 99 (127)
T ss_dssp CCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCC
Confidence 56789999965 5689999999999999998875
No 54
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=80.88 E-value=0.57 Score=34.36 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=30.8
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|++ ++..++.++++.++.+.+.+++.
T Consensus 102 ~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~ 136 (170)
T 4esy_A 102 GRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGI 136 (170)
T ss_dssp HTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTC
T ss_pred ccccchhhhccc--CcccCCcchhHHHHHHHHHHcCC
Confidence 456789999986 67889999999999999999885
No 55
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=80.49 E-value=0.88 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.| ...++.++++.++++.+.+++.
T Consensus 101 ~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~ 133 (156)
T 3oi8_A 101 EQFHLKSILRP---AVFVPEGKSLTALLKEFREQRN 133 (156)
T ss_dssp GGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTC
T ss_pred CcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCC
Confidence 56789999976 7889999999999999998875
No 56
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=80.07 E-value=0.35 Score=42.66 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+|+|+|+|..+...++.+++++++++.+.+++.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i 194 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKL 194 (503)
T ss_dssp ------------------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCC
Confidence 567899999999999999999999999999998764
No 57
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=79.46 E-value=1.4 Score=35.58 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=33.2
Q ss_pred cCCccccccccccc----ceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLV----DVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~----~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|+++. ++..++.++++.++++.+.+++.
T Consensus 253 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~ 293 (323)
T 3t4n_C 253 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV 293 (323)
T ss_dssp HTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCC
T ss_pred hccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCC
Confidence 44779999999987 89999999999999999999875
No 58
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=78.34 E-value=1.5 Score=30.50 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=27.8
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++.+++++|. +...++.++++.++++.+.+++.
T Consensus 68 ~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~ 100 (130)
T 3hf7_A 68 TKEIMLRAAD---EIYFVPEGTPLSTQLVKFQRNKK 100 (130)
T ss_dssp CHHHHHHHSB---CCCEEETTCBHHHHHHHHHHHCC
T ss_pred chhhHHHhcc---CCeEeCCCCcHHHHHHHHHhcCC
Confidence 4568999993 46789999999999999998764
No 59
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=77.27 E-value=0.94 Score=31.52 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
..+.+++++|.| +...++.++++.++++.+.+++
T Consensus 70 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~ 103 (138)
T 2p9m_A 70 TLETTIGDVMTK--DVITIHEDASILEAIKKMDISG 103 (138)
T ss_dssp CSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-
T ss_pred cCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcC
Confidence 457899999986 6788999999999999999887
No 60
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=76.55 E-value=0.51 Score=41.50 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+|+|+|+|+.+.+.++.+++++|+++.+.+++.
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i 180 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRI 180 (490)
T ss_dssp ------------------------------------
T ss_pred cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCC
Confidence 467899999999889999999999999999988764
No 61
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=76.41 E-value=1.5 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=28.9
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.+.+|+++|.+ ++..++.++++.++++.+.+++
T Consensus 84 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~ 116 (156)
T 3ctu_A 84 ADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDES 116 (156)
T ss_dssp TTSBGGGGCBC--SCCCBCSSCCHHHHHHHTTTSS
T ss_pred ccCcHHHhccC--CceeeCCCCcHHHHHHHHHHcC
Confidence 48899999975 6788999999999999998765
No 62
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=75.28 E-value=1.5 Score=34.47 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=30.9
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
..+.+|+++|++ ++..++.++++.++.+.+.+++++
T Consensus 218 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~ 253 (282)
T 2yzq_A 218 LPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIE 253 (282)
T ss_dssp -CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred hccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcc
Confidence 457899999985 778999999999999999988753
No 63
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=73.68 E-value=1.4 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=31.3
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
...+.+|+++|+|. ...++.++++.++++.+.+++++
T Consensus 94 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~ 130 (180)
T 3sl7_A 94 KTYGKVVGDLMTPS--PLVVRDSTNLEDAARLLLETKFR 130 (180)
T ss_dssp TTTTCBHHHHSEES--CCCEETTSBHHHHHHHHTTSTTC
T ss_pred ccccccHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCC
Confidence 45678999999854 57799999999999999998863
No 64
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=73.31 E-value=0.7 Score=40.44 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+|+++|+|+.++..++.+++++++++.+.+++.
T Consensus 153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~ 188 (494)
T 1vrd_A 153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRI 188 (494)
T ss_dssp ------------------------------------
T ss_pred CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCC
Confidence 457899999998899999999999999999988764
No 65
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=73.18 E-value=2.6 Score=32.17 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=30.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
-.+.+|+++|++ ++..++.+++++++.+.+.++++
T Consensus 113 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 147 (205)
T 3kxr_A 113 EPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSRE 147 (205)
T ss_dssp CTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSC
T ss_pred CCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCC
Confidence 457889999975 57889999999999999999875
No 66
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=72.25 E-value=1.7 Score=38.41 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.7
Q ss_pred ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 160 EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 160 ~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.-.+.+|+|+|+| .+++.++.+++++|+++.+.+++.
T Consensus 171 ~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i 207 (511)
T 3usb_A 171 QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKI 207 (511)
T ss_dssp CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTC
T ss_pred ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCC
Confidence 3457889999998 789999999999999999998774
No 67
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=71.82 E-value=0.61 Score=41.11 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
-.+..++|+|+|+.+++.++.+++++++++.+.+++.
T Consensus 146 ~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i 182 (496)
T 4fxs_A 146 DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARV 182 (496)
T ss_dssp CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---C
T ss_pred cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999887764
No 68
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=69.20 E-value=1.7 Score=30.95 Aligned_cols=34 Identities=6% Similarity=0.270 Sum_probs=29.2
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++.+|+++ .++..++.++++.++++.+.+++++
T Consensus 20 l~~~~v~~~----~~~~~v~~~~~~~~a~~~m~~~~~~ 53 (152)
T 2uv4_A 20 LEELQIGTY----ANIAMVRTTTPVYVALGIFVQHRVS 53 (152)
T ss_dssp HHHHTCSBC----SSCCCEETTCBHHHHHHHHHHHCCS
T ss_pred HHHccCCcc----CCceEeCCCCcHHHHHHHHHHcCCc
Confidence 466788888 7888999999999999999988764
No 69
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=68.25 E-value=2.9 Score=32.74 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+.+++++|.| +...++.++++.++++.+.+++++
T Consensus 58 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~ 92 (282)
T 2yzq_A 58 DEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYR 92 (282)
T ss_dssp ------CCCBS--CCCEEETTSBHHHHHHHHHHHTCS
T ss_pred ccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCC
Confidence 46789999987 578899999999999999988753
No 70
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=66.96 E-value=5.7 Score=23.91 Aligned_cols=23 Identities=4% Similarity=0.097 Sum_probs=20.4
Q ss_pred eEEEeCCCCHHHHHHHHHhCCCC
Q 046285 176 VVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 176 i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+..++.++++.++++.+.+++++
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~ 24 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAG 24 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCS
T ss_pred CeEECCCCcHHHHHHHHHHcCCC
Confidence 57799999999999999998874
No 71
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=64.46 E-value=1.9 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=28.0
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+++++|.+ +...++.++++.++++.+.++++
T Consensus 68 ~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~ 99 (128)
T 3gby_A 68 EKLGEELLE--TVRSYRPGEQLFDNLISVAAAKC 99 (128)
T ss_dssp CBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSS
T ss_pred CcHHHHccC--CCcEECCCCCHHHHHHHHHhCCC
Confidence 679999984 67789999999999999999875
No 72
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=64.13 E-value=3.9 Score=32.58 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.6
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
-.+.+|+++|.+ ++..++.++++.++++.+.++++
T Consensus 196 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 230 (278)
T 2yvy_A 196 DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDF 230 (278)
T ss_dssp CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTC
T ss_pred CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCC
Confidence 467899999975 57889999999999999998875
No 73
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=63.50 E-value=3.6 Score=29.22 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCccccccccccc----ceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 162 KDTHVREVMTPLV----DVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 162 ~~~~v~eiM~PR~----~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
.+.+++++|.+.. ....++.++++.++++.+.+++.+
T Consensus 82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~ 122 (164)
T 2pfi_A 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQ 122 (164)
T ss_dssp CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCS
T ss_pred ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCC
Confidence 4678999998652 267899999999999999998753
No 74
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=63.43 E-value=7.3 Score=24.33 Aligned_cols=24 Identities=4% Similarity=0.100 Sum_probs=21.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 175 DVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 175 ~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++.++.++++.|+.+.+.+++++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~ 24 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAG 24 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCS
T ss_pred CCEEECCCCcHHHHHHHHHHcCCC
Confidence 467899999999999999999875
No 75
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=62.36 E-value=2.7 Score=30.42 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=29.0
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
+.+.+|+++|++ ++..++.++++.++++.+.+++
T Consensus 83 ~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~ 116 (156)
T 3k6e_A 83 MADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDES 116 (156)
T ss_dssp HTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSS
T ss_pred ccccCHHHhhcC--CceecccccHHHHHHHHHHHcC
Confidence 467899999974 5778999999999999998765
No 76
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=61.45 E-value=60 Score=25.82 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046285 87 VRFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 87 ~~~~a~~l~~~~~l~~P~~~~~ 108 (198)
+......+..+.+.+||++|.+
T Consensus 183 ~f~~l~~~v~v~W~iYPi~w~l 204 (262)
T 1m0k_A 183 TFKVLRNVTVVLWSAYPVVWLI 204 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566678889999966
No 77
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=60.66 E-value=3.2 Score=36.21 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=7.1
Q ss_pred HHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 150 EEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 150 ~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+.++.+..+.. ++++|++ +++.++.+++++|+++.+.+++++
T Consensus 86 ~~~~~v~~v~~-----~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~ 127 (494)
T 1vrd_A 86 EQARQVSIVKK-----TENGIIY--DPITVTPDMTVKEAIDLMAEYKIG 127 (494)
T ss_dssp HHHHHHHHHHT-----C--------------------------------
T ss_pred HHHHHHHhhhh-----HhhcCcc--CCeEECCCCCHHHHHHHHHHcCce
Confidence 34566777754 5778986 789999999999999999988764
No 78
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=60.37 E-value=4.8 Score=35.01 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=33.6
Q ss_pred HHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 152 QDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 152 ~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++++.. -.+.+++|+|++ ++..++.+++++++.+.+.+++.
T Consensus 210 ~Dll~~---~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~ 250 (473)
T 2zy9_A 210 RDLIVA---DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDF 250 (473)
T ss_dssp HHHHHS---CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTC
T ss_pred HHHhcC---CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCC
Confidence 355542 467899999975 68899999999999999998875
No 79
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=59.91 E-value=4.1 Score=32.20 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHHHHhh-ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 152 QDMIENVL-EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 152 ~~~i~~v~-~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++++.... ...+.+|+++|. .++..++.++++.++++.+.+++++
T Consensus 143 ~dl~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~ 188 (296)
T 3ddj_A 143 REFLLLYKDLDEIFPVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFR 188 (296)
T ss_dssp HHHGGGGGGSCCCCBHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCS
T ss_pred HHHHHhhhcccccccHHHhhc--CCCeEECCCCCHHHHHHHHHHcCCC
Confidence 34444332 345679999997 4688899999999999999998864
No 80
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=59.81 E-value=4.7 Score=32.49 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=31.7
Q ss_pred CCcccccccccc----cceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPL----VDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR----~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|.++ .++..++.++++.++++.+.+++.
T Consensus 249 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~ 288 (334)
T 2qrd_G 249 LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRV 288 (334)
T ss_dssp GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCC
T ss_pred ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCC
Confidence 467899999976 578899999999999999999875
No 81
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=58.68 E-value=65 Score=25.38 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046285 87 VRFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 87 ~~~~a~~l~~~~~l~~P~~~~~ 108 (198)
+......+..+.+.+||+.|.+
T Consensus 175 ~f~~l~~~v~v~W~iYPi~w~l 196 (253)
T 2ei4_A 175 TFNTLTALVAVLWTAYPILWIV 196 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555667778889999966
No 82
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=58.41 E-value=24 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046285 88 RFVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 88 ~~~a~~l~~~~~l~~P~~~~~~ 109 (198)
......+..+.+.+||++|.+.
T Consensus 169 f~~l~~~~~v~W~iYPi~w~l~ 190 (243)
T 2l6x_A 169 YNTMMYIIIFGWAIYPVGYFTG 190 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555666788899999775
No 83
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=57.37 E-value=82 Score=26.12 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=24.0
Q ss_pred HHHhhhhhHHHHhhch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 68 LLLTEITPKSIAVHHA--TDVVRFVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 68 lifgEilPk~la~~~p--~~i~~~~a~~l~~~~~l~~P~~~~~~ 109 (198)
.+++....|+.....+ .+-+......+..+.+.+||++|.+.
T Consensus 206 ~l~~ge~~kaa~~~~~~~v~~af~~Lr~~vlV~WaIYPIvW~Lg 249 (333)
T 3ug9_A 206 FNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILG 249 (333)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhhHHHeec
Confidence 3444334455443321 23344455666677788999999763
No 84
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=57.22 E-value=5.9 Score=30.74 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=33.6
Q ss_pred HHHHHHhhc--cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 152 QDMIENVLE--IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 152 ~~~i~~v~~--~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++++...+ ..+.+++++|++ ++..++.++++.++++.+.+++++
T Consensus 134 ~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~ 180 (280)
T 3kh5_A 134 RDVIRALLDKIDENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFR 180 (280)
T ss_dssp HHHHHHHGGGSCTTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcCCCCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCC
Confidence 345544332 234589999974 678899999999999999998864
No 85
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=56.72 E-value=9.4 Score=33.47 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHHHhh---ccCCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 151 EQDMIENVL---EIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 151 E~~~i~~v~---~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
++++++.+. ...+.+|+++|++ ++..++.++++.++.+.+.+++
T Consensus 435 ~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~ 481 (527)
T 3pc3_A 435 QETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDP 481 (527)
T ss_dssp HHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCS
T ss_pred HHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCC
Confidence 456665554 3457899999985 7788999999999999997664
No 86
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=55.61 E-value=4.9 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=30.5
Q ss_pred cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
..+.+|+++|.+ ++..++.+++++++.+.+.++++
T Consensus 198 ~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~ 232 (286)
T 2oux_A 198 DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDF 232 (286)
T ss_dssp CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTC
T ss_pred CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCC
Confidence 357889999975 57889999999999999998875
No 87
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=55.34 E-value=77 Score=25.17 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=23.8
Q ss_pred HHHhhhhhHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 68 LLLTEITPKSIAVHHA-TDVVRFVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 68 lifgEilPk~la~~~p-~~i~~~~a~~l~~~~~l~~P~~~~~~ 109 (198)
.++++. .|+...+.| .+-+......+..+.+.+||++|.+.
T Consensus 145 ~l~~~~-~~~a~~~~~~v~~~f~~l~~~v~v~W~iYPI~w~l~ 186 (261)
T 1xio_A 145 GIWNPL-RAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (261)
T ss_dssp HHHTHH-HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445554 664333322 23344445566677788999999763
No 88
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=54.38 E-value=5.3 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=27.9
Q ss_pred ccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 167 REVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 167 ~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
+++|+++.++..++.++++.++++.+.+++++
T Consensus 110 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~ 141 (334)
T 2qrd_G 110 RKIGAIPPETIYVHPMHSLMDACLAMSKSRAR 141 (334)
T ss_dssp HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCS
T ss_pred HhhccCCCceeeeCCCCcHHHHHHHHHHCCce
Confidence 35688888889999999999999999998864
No 89
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=52.57 E-value=2.1 Score=37.57 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|+|+.++..++.+++++++.+.+.+++.
T Consensus 171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~ 206 (514)
T 1jcn_A 171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKK 206 (514)
T ss_dssp ----------CCBCCCCEETTCCSTTTTTHHHHHTC
T ss_pred CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCC
Confidence 467899999998899999999999999999988764
No 90
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=51.96 E-value=90 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHhhhhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 68 LLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 68 lifgEilPk~la~~~p~~i~~~~a~~l~~~~~l~~P~~~~~ 108 (198)
.++++. .|+...+ ..+-+......+..+.+.+||+.|.+
T Consensus 178 ~l~~~~-~~~a~~~-~v~~~f~~l~~~v~v~W~iYPI~w~l 216 (274)
T 2jaf_A 178 ALVTDW-AASASSA-GTAEIFDTLRVLVVVLWLGYPIVWAV 216 (274)
T ss_dssp HHHTHH-HHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 6655444 44445555556667778899999965
No 91
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=51.75 E-value=11 Score=32.71 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|++ .++..++.+++++++++.+.+++.
T Consensus 150 ~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~ 184 (491)
T 1zfj_A 150 YNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRI 184 (491)
T ss_dssp SSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTC
T ss_pred CCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCC
Confidence 67899999986 367889999999999999999864
No 92
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=50.75 E-value=17 Score=25.87 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH
Q 046285 58 AATGVMTVAILLLTEITPKSIA 79 (198)
Q Consensus 58 ~~~~i~t~l~lifgEilPk~la 79 (198)
+-..+.|+.++-+|++.|++..
T Consensus 48 ~y~~~~T~tTvGyGDi~P~t~~ 69 (137)
T 4h33_A 48 LWWAIVTATTVGYGDIVPVTPI 69 (137)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHH
T ss_pred HHHHHHHHHcccCCCCCCCCHh
Confidence 3445667777889999998744
No 93
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=49.26 E-value=3.6 Score=36.72 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQ 196 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~ 196 (198)
.++.|+|+||| +++..+.+.+++|+.+++.+++
T Consensus 198 ~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~k 230 (556)
T 4af0_A 198 AETPIKSVMTT--EVVTGSSPITLEKANSLLRETK 230 (556)
T ss_dssp -----------------------------------
T ss_pred cceEhhhhccc--ceEEecCCCCHHHHHHHHHHcc
Confidence 46789999997 6999999999999999988765
No 94
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=47.48 E-value=18 Score=26.31 Aligned_cols=42 Identities=7% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 152 QDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 152 ~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
++++....+-.+.+++ +| .++..++.++++.++++.+.+++.
T Consensus 89 ~Dl~~~~~~~~~~~v~-~~---~~~~~v~~~~~l~~al~~m~~~~~ 130 (173)
T 3ocm_A 89 KDLVADLITEGRVRRN-RL---RDPIIVHESIGILRLMDTLKRSRG 130 (173)
T ss_dssp HHHHHHHHHHSSCCGG-GS---BCCCEECGGGCHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCCcchhH-hc---CCCeEECCCCcHHHHHHHHHHcCC
Confidence 4555544433577888 55 346789999999999999999874
No 95
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=46.77 E-value=13 Score=33.57 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=25.5
Q ss_pred ccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 165 HVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 165 ~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+++|+|++. ...++.|++++|+.+.+.+++.
T Consensus 569 ~v~~iMt~~--pitV~~~~~l~ea~~~M~~~~i 599 (632)
T 3org_A 569 SLVVPCDVS--PIVVTSYSLVRQLHFLFVMLMP 599 (632)
T ss_dssp --CCSCCCC--CCEEETTCBHHHHHHHHHHTCC
T ss_pred ccchhhcCC--CceecCCCcHHHHHHHHHhcCC
Confidence 388999864 5679999999999999999875
No 96
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=44.52 E-value=12 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred Ccccccccccc----cceEEEeCCCCHHHHHHHHHhCCC
Q 046285 163 DTHVREVMTPL----VDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 163 ~~~v~eiM~PR----~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
+.+++++|.++ .+...++.++++.++++.+.+++.
T Consensus 258 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 296 (330)
T 2v8q_E 258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEV 296 (330)
T ss_dssp SSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTC
T ss_pred cCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCC
Confidence 67899999764 678899999999999999998875
No 97
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=44.25 E-value=4.7 Score=35.11 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred CCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285 162 KDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY 197 (198)
Q Consensus 162 ~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~ 197 (198)
.+.+++++|++ +...++.+++++++++.+.+++.
T Consensus 148 ~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~ 181 (486)
T 2cu0_A 148 EGKLVKELMTK--EVITVPESIEVEEALKIMIENRI 181 (486)
T ss_dssp ------------------------------------
T ss_pred CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCC
Confidence 45789999986 67889999999999999988763
No 98
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=41.78 E-value=9.7 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=12.7
Q ss_pred cccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285 164 THVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198 (198)
Q Consensus 164 ~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S 198 (198)
++++++|++ +.+.++.+++++++++.+.+++++
T Consensus 108 ~~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~ 140 (514)
T 1jcn_A 108 KNFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFS 140 (514)
T ss_dssp HTCCTTSCS--SCCCCCC-----------------
T ss_pred hhhhhcccc--CCEEECCCCCHHHHHHHHHhcCCC
Confidence 368899985 577899999999999999988764
No 99
>3qbg_A Halorhodopsin; membrane protein, ION pump, retinal, membrane; HET: RET BNG 22B; 1.80A {Natronomonas pharaonis} PDB: 3a7k_A* 3abw_A* 3qbi_A* 3qbk_A* 3qbl_A*
Probab=41.55 E-value=1.4e+02 Score=24.13 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046285 85 DVVRFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 85 ~i~~~~a~~l~~~~~l~~P~~~~~ 108 (198)
+-+......+..+.+.+||++|.+
T Consensus 208 ~~~f~~L~~~v~v~W~iYPI~w~l 231 (291)
T 3qbg_A 208 ADIFSTLKLLTVVMWLGYPIVWAL 231 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhh
Confidence 334445556667778899999976
No 100
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.32 E-value=68 Score=20.50 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-+.=...--.+.+|++-|.....|.+..|.
T Consensus 8 ~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 35788888877776677778899999999999999887764
No 101
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=40.20 E-value=48 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhh
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVL 159 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~ 159 (198)
...|+++-..+++.-.++|.+++.|.+|+..++
T Consensus 90 ~~is~~~a~~ii~~L~e~~~it~REa~l~~~a~ 122 (155)
T 3h0d_A 90 HRISQSSAEDVIKRLMEEKVISEREAKMMLSVM 122 (155)
T ss_dssp SCCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHS
T ss_pred cccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 357899999999999999999999999999998
No 102
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=39.74 E-value=88 Score=24.99 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=20.2
Q ss_pred hHHHHhhchHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 046285 75 PKSIAVHHATDVV--RFVVRPVAWLSLILYPVGRVCT 109 (198)
Q Consensus 75 Pk~la~~~p~~i~--~~~a~~l~~~~~l~~P~~~~~~ 109 (198)
.|+.. +.|..+. ......+..+.+.+||++|.+.
T Consensus 175 ~~~a~-~~~~~v~~~~~~l~~~v~v~W~iYPI~w~l~ 210 (273)
T 3ddl_A 175 GDTIQ-RQSSRVSTLLGNARLLLLATWGFYPIAYMIP 210 (273)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-cCCHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 55443 3333333 3344556667788999999763
No 103
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.91 E-value=52 Score=20.85 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=16.3
Q ss_pred HccCCCCCCCCCCHHHHHHHHHH
Q 046285 118 ALGLKGRSEPYVTEDELKLMLRG 140 (198)
Q Consensus 118 ~~g~~~~~~~~~s~eel~~lv~~ 140 (198)
.+|++..+-..+|+||+...++.
T Consensus 39 kLGI~ktdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 39 KLGIHKTDPSTLTEEEVRKFARL 61 (71)
T ss_dssp HHTCCCCSTTTCCHHHHHHHHHT
T ss_pred HcCCCCCCcccCCHHHHhhceec
Confidence 34777544456899999888765
No 104
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.91 E-value=58 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=22.3
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRGA 141 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~~ 141 (198)
.++.+++-.|+++.. -..+|+||+..+.+.-
T Consensus 42 ~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 42 YSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp HHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 456777778888653 4578999998877654
No 105
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=27.67 E-value=90 Score=18.03 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 129 VTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 129 ~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
+|.+++..+-..-......+..+++-+..-+.+++..|+
T Consensus 4 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 4 FSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 466666655555555666777788878777777766553
No 106
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=26.85 E-value=39 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHH-HHHHHHh
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEE-QDMIENV 158 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E-~~~i~~v 158 (198)
.+|+||+..+++.-.++|.+++.+ +..|..+
T Consensus 40 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~v 71 (112)
T 2lky_A 40 RLTNDEIKAIAEDLEKRAHFDHIDIGVLITQM 71 (112)
T ss_dssp TCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 489999999888777777665543 4445444
No 107
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=25.48 E-value=1.1e+02 Score=18.08 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-..-......+..+++-|..-+.+++..|.
T Consensus 8 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 8 TAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 45788888777666666777888999999988888877653
No 108
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=25.31 E-value=1.1e+02 Score=17.99 Aligned_cols=41 Identities=7% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-..-......+..+++-|..-+.+++..|.
T Consensus 8 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 8 TVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 35778877766665566677888899999888888877653
No 109
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=24.86 E-value=77 Score=22.81 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhc---cCCccccccc
Q 046285 134 LKLMLRGAELSGAIEEEEQDMIENVLE---IKDTHVREVM 170 (198)
Q Consensus 134 l~~lv~~~~~~g~l~~~E~~~i~~v~~---~~~~~v~eiM 170 (198)
+..++..+...|.++++|++.+.+.++ +++...+.++
T Consensus 33 ~~all~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~ 72 (161)
T 2ou3_A 33 MKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLK 72 (161)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 345566777899999999999999876 4444433333
No 110
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=24.26 E-value=75 Score=23.32 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=22.1
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRG 140 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~ 140 (198)
.++.+++.+|+++.. -..+|++|+..+.+.
T Consensus 42 ~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~ 72 (155)
T 2xzm_M 42 FAYIICKVLKIDPNARAGLLTEDQCNKITDL 72 (155)
T ss_dssp HHHHHHHHTTCCSSSCSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccccCCHHHHHHHHHH
Confidence 466777888988753 457899999877654
No 111
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=23.55 E-value=2.6e+02 Score=21.64 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=23.0
Q ss_pred HHHHhhhhhHHHHhhchHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 046285 67 ILLLTEITPKSIAVHHATDVV--RFVVRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 67 ~lifgEilPk~la~~~p~~i~--~~~a~~l~~~~~l~~P~~~~~ 108 (198)
-.++|| ..|. +.+.|.... ......+..+.+..||+.|.+
T Consensus 139 y~l~~~-~~~~-a~~~~~~v~~~~~~l~~~v~v~W~iYPi~w~l 180 (239)
T 3qap_A 139 YYLVGP-MTES-ASQRSSGIKSLYVRLRNLTVILWAIYPFIWLL 180 (239)
T ss_dssp HHHHTH-HHHH-HTTSCHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHH-HHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566 3554 333444433 344455556667899999976
No 112
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=23.54 E-value=1.2e+02 Score=17.74 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-..-......+.+|++.|..-+.+++..|.
T Consensus 10 t~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 35678777766665566677888899999888888776653
No 113
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=23.38 E-value=44 Score=22.98 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHhhccCCccccc
Q 046285 135 KLMLRGAELSGAIEEEEQDMIENVLEIKDTHVRE 168 (198)
Q Consensus 135 ~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~e 168 (198)
++.++.+.+.|.+++++.+....+..+++.+|.+
T Consensus 57 rd~~r~a~~~glI~~~~~~~w~~m~~~RN~~vH~ 90 (119)
T 1wwp_A 57 KGVIRLAREVGLLRDEEARLALGMVDDRSLTVHT 90 (119)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhHhccc
Confidence 3356667788999999888899999998888763
No 114
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=22.96 E-value=1.2e+02 Score=17.49 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
.+|.+++..|-..-......+.++++-|..-+.+++..|.
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 4677777766665566667788888888888888776653
No 115
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=22.46 E-value=1.2e+02 Score=17.59 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
.+|.+++..|-..-......+..+++-|..-+.+++..|.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 3677777666555555666788888888888887776653
No 116
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=21.65 E-value=1e+02 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=22.7
Q ss_pred HHhhHHHHccCCCCC-CCCCCHHHHHHHHHHH
Q 046285 111 ISMGMLKALGLKGRS-EPYVTEDELKLMLRGA 141 (198)
Q Consensus 111 ~~~~l~r~~g~~~~~-~~~~s~eel~~lv~~~ 141 (198)
.++.+++..|+++.. -..+|+||+..+.+.-
T Consensus 28 ~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 28 RSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 456777788888753 4578999998876654
No 117
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=20.69 E-value=2.9e+02 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046285 91 VRPVAWLSLILYPVGRVC 108 (198)
Q Consensus 91 a~~l~~~~~l~~P~~~~~ 108 (198)
...+..+.+.+||++|.+
T Consensus 170 l~~~v~v~W~iYPi~w~l 187 (229)
T 3am6_A 170 LLVFLSILWVFYPVVWAF 187 (229)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555667789999965
No 118
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.50 E-value=40 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCcH
Q 046285 128 YVTEDELKLMLRGAELSGAIEE 149 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~ 149 (198)
.+|+||+..+++.-.++|.+++
T Consensus 38 ~Ltdeev~~Va~~L~~~~~i~~ 59 (103)
T 2kvc_A 38 RLSHDEVKAVANELMRLGDFDQ 59 (103)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCS
T ss_pred cCCHHHHHHHHHHHHHcCCCCH
Confidence 4899999998887777775544
No 119
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=20.49 E-value=1.4e+02 Score=17.37 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
.+|.+++..|-..-......+..+++-|..-+.+++..|.
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4677777766666566667788888888888888776653
No 120
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.35 E-value=1.9e+02 Score=18.85 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccc
Q 046285 127 PYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVR 167 (198)
Q Consensus 127 ~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~ 167 (198)
..+|.+++..|-..=+.....+..+++-|...+.|.++.|+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 35789998888777777788999999999999999888764
Done!