BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046286
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 49/68 (72%)

Query: 99  AFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVT 158
             QT S  D+LDDGYRWRKYGQK VK + YPRSYY+CT   C V+K V+R + D   VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 159 TYEGIHNH 166
           TYEG HNH
Sbjct: 67  TYEGKHNH 74


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R    T++  DI++DGYRWRKYGQK+VK S YPRSYYRC+   C VKK V+R S DT ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 157 VTTYEGIHNH 166
           +TTYEG H+H
Sbjct: 62  ITTYEGKHDH 71


>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
           (Tbpa) From Neisserial Meningitidis Serogroup B In
           Complex With Full Length Human Transferrin
          Length = 904

 Score = 28.5 bits (62), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 15/17 (88%)

Query: 99  AFQTRSADDILDDGYRW 115
           AFQT++ADD++ +G +W
Sbjct: 161 AFQTKTADDVIGEGRQW 177


>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
           (Tbpa) From Neisseria Meningitidis Serogroup B In
           Complex With The C-Lobe Of Human Transferrin
          Length = 904

 Score = 28.5 bits (62), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 15/17 (88%)

Query: 99  AFQTRSADDILDDGYRW 115
           AFQT++ADD++ +G +W
Sbjct: 161 AFQTKTADDVIGEGRQW 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,903,024
Number of Sequences: 62578
Number of extensions: 221585
Number of successful extensions: 371
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)