Query 046286
Match_columns 188
No_of_seqs 141 out of 677
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.9E-36 1E-40 220.4 7.1 75 96-170 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.4E-36 1.2E-40 221.1 5.6 74 96-169 4-77 (78)
3 2rpr_A Flywch-type zinc finger 66.5 3.3 0.00011 29.1 2.3 49 108-169 23-74 (87)
4 1cz6_A Protein (androctonin); 42.9 7.2 0.00025 22.7 0.6 8 131-138 16-23 (26)
5 1xiw_B T-cell surface glycopro 19.5 23 0.00079 24.7 0.0 26 110-135 17-52 (79)
6 3kgb_A Thymidylate synthase 1/ 10.4 43 0.0015 29.3 -0.8 11 111-121 114-124 (294)
7 3ed7_A Tsase, TS, thymidylate 10.2 43 0.0015 29.3 -0.9 11 111-121 117-127 (295)
8 1xiw_A T-cell surface glycopro 9.5 81 0.0028 23.7 0.5 29 110-138 33-80 (105)
9 3kp1_A D-ornithine aminomutase 9.0 76 0.0026 31.3 0.2 48 109-159 28-80 (763)
10 1ter_A Tertiapin; toxin; NMR { 8.1 62 0.0021 18.7 -0.5 12 112-123 12-23 (26)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-36 Score=220.41 Aligned_cols=75 Identities=56% Similarity=1.008 Sum_probs=71.7
Q ss_pred CeeEEEecCCCCCCCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCCCcc
Q 046286 96 PRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEK 170 (188)
Q Consensus 96 pr~~~~t~s~~~~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~~ 170 (188)
.|++|+|.+..++++|||+|||||||.|||+++||+||||++.||+|+|+|||+++|+.+++|||+|.|||+.+.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999998763
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3.4e-36 Score=221.07 Aligned_cols=74 Identities=58% Similarity=0.979 Sum_probs=68.3
Q ss_pred CeeEEEecCCCCCCCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCCCc
Q 046286 96 PRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCE 169 (188)
Q Consensus 96 pr~~~~t~s~~~~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~ 169 (188)
.+++|+|.++.++++|||+|||||||.|||+++||+||||++.+|+|+|+|||+++|+.+++|||+|.|||+.+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999865
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=66.49 E-value=3.3 Score=29.08 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCCCCcchhccCcccccCCCCCccceeccC---CCcccccceeeecCCCCEEEEEEecccCCCCc
Q 046286 108 ILDDGYRWRKYGQKAVKNSLYPRSYYRCTH---HTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCE 169 (188)
Q Consensus 108 ~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~---~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~ 169 (188)
++-|||.-.+--+ ...+.|.+|+. .+|.|+=.... +. + .-.+.|||+..
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~--~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR--I--MVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE--E--EECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC--E--ECCCCcCCCCc
Confidence 5568987765221 12368999997 48999744332 22 2 34688999654
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=42.93 E-value=7.2 Score=22.67 Aligned_cols=8 Identities=50% Similarity=1.422 Sum_probs=6.7
Q ss_pred cceeccCC
Q 046286 131 SYYRCTHH 138 (188)
Q Consensus 131 sYYRCt~~ 138 (188)
.||+|+++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999975
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=19.47 E-value=23 Score=24.68 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=17.9
Q ss_pred CCCcchhccCccc--------cc--CCCCCccceec
Q 046286 110 DDGYRWRKYGQKA--------VK--NSLYPRSYYRC 135 (188)
Q Consensus 110 ~DGy~WRKYGQK~--------Ik--gs~~PRsYYRC 135 (188)
.+++.|.|-|... +. ...-||++|.|
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C 52 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEE
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEe
Confidence 5668899887642 22 33448999998
No 6
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=10.38 E-value=43 Score=29.26 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=8.5
Q ss_pred CCcchhccCcc
Q 046286 111 DGYRWRKYGQK 121 (188)
Q Consensus 111 DGy~WRKYGQK 121 (188)
=|++||.+|-+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 7
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=10.21 E-value=43 Score=29.32 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=8.7
Q ss_pred CCcchhccCcc
Q 046286 111 DGYRWRKYGQK 121 (188)
Q Consensus 111 DGy~WRKYGQK 121 (188)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 36899999865
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=9.52 E-value=81 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=19.0
Q ss_pred CCCcchhccCccc----------------ccCCCC---CccceeccCC
Q 046286 110 DDGYRWRKYGQKA----------------VKNSLY---PRSYYRCTHH 138 (188)
Q Consensus 110 ~DGy~WRKYGQK~----------------Ikgs~~---PRsYYRCt~~ 138 (188)
++...|.|-|+.. +.++-. ||+||.|...
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~~ 80 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEET
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEccC
Confidence 3457888877552 335533 8999999643
No 9
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=8.98 E-value=76 Score=31.30 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=28.8
Q ss_pred CCCCcchhccCcccccCCCCCccceeccCC-----CcccccceeeecCCCCEEEEE
Q 046286 109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHH-----TCNVKKQVQRLSKDTSIVVTT 159 (188)
Q Consensus 109 ~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~-----gC~akKqVqr~~~D~~~~~tt 159 (188)
---||.||| |.-.+..-+=.|+.|+.. .-++-|.+...+.-+.-++++
T Consensus 28 ~r~gw~wr~---~~~~~~~~~~~y~~~s~~l~~~~~lp~~~~~~~~~~~p~~~i~~ 80 (763)
T 3kp1_A 28 KRRGWTWRQ---PAENLQMGPFIYKDASTPLENSVALPSAKYFGDIDPQPLPVITT 80 (763)
T ss_dssp SCCSCCCCC---BCTTEEETTEEESSEECCCSSCCCCGGGGGGTTCCCEESSEEEE
T ss_pred ccCCccccc---cCCCCCcCCcchhhhchhhhcCCCCchHHHHhhcCCCCCCEEEE
Confidence 347999997 333333444568888863 456778887654333444444
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=8.13 E-value=62 Score=18.68 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=8.0
Q ss_pred CcchhccCcccc
Q 046286 112 GYRWRKYGQKAV 123 (188)
Q Consensus 112 Gy~WRKYGQK~I 123 (188)
...|+|.|.|..
T Consensus 12 hmcwkkcgkk~~ 23 (26)
T 1ter_A 12 HMCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHHCC--
T ss_pred hHHHHHhCcccc
Confidence 357999998864
Done!