Query 046287
Match_columns 105
No_of_seqs 110 out of 1276
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09431 asnB asparagine synth 100.0 1.3E-31 2.8E-36 200.0 11.3 105 1-105 1-106 (554)
2 PTZ00077 asparagine synthetase 100.0 1.2E-31 2.7E-36 201.0 10.9 105 1-105 1-112 (586)
3 PLN02549 asparagine synthase ( 100.0 4E-31 8.6E-36 198.0 10.8 105 1-105 1-105 (578)
4 TIGR03104 trio_amidotrans aspa 100.0 9.2E-31 2E-35 196.7 11.3 104 1-105 1-107 (589)
5 COG0367 AsnB Asparagine syntha 100.0 4.4E-31 9.6E-36 196.6 9.3 104 1-105 1-106 (542)
6 TIGR03108 eps_aminotran_1 exos 100.0 1.3E-30 2.8E-35 197.1 10.6 105 1-105 1-107 (628)
7 PRK08525 amidophosphoribosyltr 100.0 1.7E-30 3.7E-35 189.8 9.8 101 1-105 1-134 (445)
8 cd00714 GFAT Glutamine amidotr 100.0 5.3E-30 1.1E-34 172.3 9.4 100 2-105 1-131 (215)
9 PRK07272 amidophosphoribosyltr 100.0 1.7E-29 3.7E-34 185.6 10.3 101 1-105 11-145 (484)
10 PRK06388 amidophosphoribosyltr 100.0 2.9E-29 6.4E-34 184.1 10.2 101 1-105 19-151 (474)
11 PRK07349 amidophosphoribosyltr 100.0 3.7E-29 7.9E-34 184.4 10.3 102 1-105 33-167 (500)
12 PRK08341 amidophosphoribosyltr 100.0 3.7E-29 7.9E-34 182.4 10.1 100 1-105 4-133 (442)
13 PRK07631 amidophosphoribosyltr 100.0 5.5E-29 1.2E-33 182.6 9.7 101 1-105 11-144 (475)
14 PRK09123 amidophosphoribosyltr 100.0 7.4E-29 1.6E-33 182.3 9.8 101 1-105 21-155 (479)
15 PRK09246 amidophosphoribosyltr 100.0 1.6E-28 3.4E-33 181.7 9.5 101 1-105 1-134 (501)
16 PRK06781 amidophosphoribosyltr 100.0 2.4E-28 5.2E-33 179.3 10.2 101 1-105 11-144 (471)
17 PRK00331 glucosamine--fructose 100.0 1.9E-28 4.1E-33 184.6 9.4 101 1-105 1-132 (604)
18 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.7E-28 3.7E-33 161.2 8.0 97 1-105 1-101 (181)
19 cd00712 AsnB Glutamine amidotr 100.0 1.1E-27 2.5E-32 161.2 11.5 103 2-105 1-105 (220)
20 PLN02440 amidophosphoribosyltr 100.0 4.9E-28 1.1E-32 178.2 10.0 101 1-105 1-134 (479)
21 PTZ00295 glucosamine-fructose- 100.0 3.4E-28 7.3E-33 184.3 9.2 101 1-105 24-162 (640)
22 TIGR01536 asn_synth_AEB aspara 99.9 1.2E-27 2.7E-32 175.7 10.8 102 4-105 1-105 (467)
23 PRK05793 amidophosphoribosyltr 99.9 9.9E-28 2.1E-32 176.2 9.9 103 1-105 14-149 (469)
24 PRK07847 amidophosphoribosyltr 99.9 1.6E-27 3.4E-32 176.1 10.0 102 1-105 23-163 (510)
25 cd01907 GlxB Glutamine amidotr 99.9 2.4E-27 5.2E-32 162.5 9.5 101 2-105 1-142 (249)
26 TIGR01135 glmS glucosamine--fr 99.9 2.2E-27 4.7E-32 179.0 8.8 100 2-105 1-131 (607)
27 PTZ00394 glucosamine-fructose- 99.9 2.7E-27 5.8E-32 180.0 9.3 105 1-105 1-164 (670)
28 PLN02981 glucosamine:fructose- 99.9 6.3E-27 1.4E-31 178.2 10.0 105 1-105 1-154 (680)
29 COG0034 PurF Glutamine phospho 99.9 2.7E-26 5.9E-31 165.2 9.5 103 1-105 4-140 (470)
30 cd00715 GPATase_N Glutamine am 99.9 9.9E-26 2.2E-30 154.6 9.7 100 2-105 1-133 (252)
31 TIGR01134 purF amidophosphorib 99.9 1.6E-25 3.5E-30 163.7 10.3 101 2-105 1-133 (442)
32 COG0449 GlmS Glucosamine 6-pho 99.9 1.4E-25 3E-30 166.8 8.2 100 1-105 1-131 (597)
33 KOG0572 Glutamine phosphoribos 99.9 1.1E-24 2.4E-29 154.0 7.8 103 1-105 1-137 (474)
34 KOG0571 Asparagine synthase (g 99.9 2.1E-24 4.6E-29 154.5 6.8 104 1-105 1-104 (543)
35 cd00352 Gn_AT_II Glutamine ami 99.9 2.6E-23 5.6E-28 138.9 10.7 101 2-104 1-134 (220)
36 KOG1268 Glucosamine 6-phosphat 99.8 4.6E-21 1E-25 140.1 9.0 105 1-105 1-147 (670)
37 PF13522 GATase_6: Glutamine a 99.8 1.3E-19 2.7E-24 113.9 5.1 73 33-105 1-79 (133)
38 TIGR03442 conserved hypothetic 99.7 8.9E-17 1.9E-21 110.4 4.5 100 1-105 1-154 (251)
39 PF13537 GATase_7: Glutamine a 99.6 3.7E-16 8.1E-21 97.1 2.3 57 48-104 1-60 (125)
40 cd01908 YafJ Glutamine amidotr 99.5 5.1E-15 1.1E-19 101.9 3.5 60 44-105 82-146 (257)
41 PF00310 GATase_2: Glutamine a 99.5 3.2E-13 7E-18 96.9 9.2 55 44-104 197-271 (361)
42 COG0067 GltB Glutamate synthas 99.2 5.5E-11 1.2E-15 85.2 7.4 55 44-104 204-262 (371)
43 cd01909 betaLS_CarA_N Glutamin 99.2 1.3E-11 2.7E-16 82.3 3.9 44 60-105 44-89 (199)
44 PF13230 GATase_4: Glutamine a 99.2 2.2E-11 4.8E-16 84.6 3.4 96 1-104 1-135 (271)
45 KOG0573 Asparagine synthase [A 98.9 3.8E-09 8.3E-14 77.0 7.0 78 1-81 1-82 (520)
46 cd01910 Wali7 This domain is p 98.7 3.5E-08 7.6E-13 66.7 4.6 41 63-105 66-106 (224)
47 cd00713 GltS Glutamine amidotr 98.6 3.3E-08 7.2E-13 72.2 3.8 55 44-104 203-278 (413)
48 COG0121 Predicted glutamine am 98.4 7.9E-07 1.7E-11 61.4 5.6 80 1-83 1-115 (252)
49 PRK11750 gltB glutamate syntha 95.2 0.019 4.2E-07 48.2 3.3 38 44-87 214-253 (1485)
50 TIGR03823 FliZ flagellar regul 86.4 0.59 1.3E-05 30.2 2.0 19 68-86 33-51 (168)
51 PRK11582 flagella biosynthesis 86.2 0.61 1.3E-05 30.2 2.0 19 68-86 33-51 (169)
52 PF09147 DUF1933: Domain of un 82.0 1.5 3.2E-05 29.1 2.5 45 58-104 39-85 (201)
53 KOG0399 Glutamate synthase [Am 73.2 1.8 3.9E-05 36.8 1.1 30 44-79 286-317 (2142)
54 cd00713 GltS Glutamine amidotr 73.2 7.4 0.00016 29.1 4.2 34 2-35 1-35 (413)
55 PF04641 Rtf2: Rtf2 RING-finge 72.1 2.6 5.7E-05 29.3 1.6 35 45-89 33-67 (260)
56 COG4892 Predicted heme/steroid 67.6 4.6 0.0001 22.7 1.7 16 66-81 15-30 (81)
57 COG4256 HemP Hemin uptake prot 60.6 6.4 0.00014 21.3 1.4 18 63-80 33-50 (63)
58 PF10636 hemP: Hemin uptake pr 59.0 10 0.00022 18.6 1.8 14 67-80 12-25 (38)
59 KOG0898 40S ribosomal protein 57.3 4.5 9.8E-05 25.6 0.5 24 67-90 97-120 (152)
60 PRK10183 hypothetical protein; 54.2 11 0.00024 20.1 1.6 14 67-80 30-43 (56)
61 PF10777 YlaC: Inner membrane 41.3 9.6 0.00021 24.5 0.2 20 69-88 95-114 (155)
62 PHA02104 hypothetical protein 39.5 11 0.00024 21.2 0.2 13 69-81 51-63 (89)
63 PF00173 Cyt-b5: Cytochrome b5 37.4 24 0.00051 19.1 1.4 18 67-84 13-30 (76)
64 PRK06764 hypothetical protein; 37.3 36 0.00079 19.9 2.1 17 65-81 81-97 (105)
65 PF02960 K1: K1 glycoprotein; 36.2 3.5 7.7E-05 25.2 -2.2 8 1-8 83-90 (130)
66 PRK05863 sulfur carrier protei 33.0 54 0.0012 17.5 2.3 23 67-89 29-51 (65)
67 COG1763 MobB Molybdopterin-gua 29.5 98 0.0021 20.1 3.4 31 1-33 1-31 (161)
68 PF02839 CBM_5_12: Carbohydrat 27.6 43 0.00094 16.0 1.2 11 71-81 15-25 (41)
69 PF09894 DUF2121: Uncharacteri 27.5 54 0.0012 22.1 2.0 17 72-88 22-38 (194)
70 KOG1110 Putative steroid membr 26.7 48 0.001 22.1 1.6 23 67-89 72-94 (183)
71 PF12481 DUF3700: Aluminium in 26.3 2.3E+02 0.0049 19.7 5.8 22 67-88 74-95 (228)
72 COG0120 RpiA Ribose 5-phosphat 26.0 91 0.002 21.5 2.9 28 62-89 167-195 (227)
73 PRK07440 hypothetical protein; 25.5 93 0.002 17.0 2.5 18 67-84 33-50 (70)
74 COG1671 Uncharacterized protei 24.8 51 0.0011 21.3 1.4 24 66-89 83-106 (150)
75 KOG0537 Cytochrome b5 [Energy 24.6 60 0.0013 20.1 1.7 20 67-86 18-37 (124)
76 KOG3039 Uncharacterized conser 24.5 44 0.00096 23.6 1.2 25 60-88 50-74 (303)
77 PF01589 Alpha_E1_glycop: Alph 24.3 44 0.00096 25.5 1.3 15 68-82 238-252 (502)
78 PRK00124 hypothetical protein; 23.4 62 0.0013 20.9 1.6 23 67-89 85-107 (151)
79 COG4815 Uncharacterized protei 23.3 1.5E+02 0.0033 18.7 3.3 30 51-80 58-90 (145)
80 PF04500 FLYWCH: FLYWCH zinc f 23.2 1E+02 0.0022 15.6 2.3 18 66-83 5-22 (62)
81 PRK06083 sulfur carrier protei 22.7 1.1E+02 0.0024 17.5 2.5 19 67-85 47-65 (84)
82 cd04906 ACT_ThrD-I_1 First of 22.5 89 0.0019 17.5 2.1 22 81-102 55-78 (85)
83 PF09466 Yqai: Hypothetical pr 20.8 43 0.00094 18.8 0.5 29 67-95 37-68 (71)
84 PF02457 DisA_N: DisA bacteria 20.6 1.1E+02 0.0023 18.8 2.3 13 67-79 110-122 (122)
85 PF10411 DsbC_N: Disulfide bon 20.4 83 0.0018 16.4 1.5 19 61-81 34-53 (57)
86 PF10845 DUF2576: Protein of u 20.1 80 0.0017 16.1 1.3 14 76-89 8-21 (48)
No 1
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.97 E-value=1.3e-31 Score=199.98 Aligned_cols=105 Identities=52% Similarity=0.947 Sum_probs=93.5
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N 80 (105)
||||+|+++.........+.+.+|+.+|+|||||++|+|..++++|||+||++++...+.||+.+.++.++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999754322112467889999999999999999999999999999999999889999988888999999999999
Q ss_pred hHHHHHHhc-CCCcccCChhhhhhcC
Q 046287 81 HKQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~eL~~~l~-g~~~~~~sD~evll~~ 105 (105)
+.||+++|. .+.|+|.||+|||+++
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~l 106 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILAL 106 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHH
Confidence 999999997 6789999999999874
No 2
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=200.98 Aligned_cols=105 Identities=52% Similarity=0.926 Sum_probs=91.9
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe-----CCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEc
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH-----GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVN 75 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~-----~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~N 75 (105)
||||+|+++...........+.+|+.+|.|||||++|+|.. ++++|||+||++++...+.||+.+.+++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999754322222355778999999999999999985 5689999999999988899999988889999999
Q ss_pred eeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 76 GEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 76 GeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|||||+.+||++|. |+.|+|.||+|||+++
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~l 112 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHL 112 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 99999999999997 7999999999999874
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=4e-31 Score=197.95 Aligned_cols=105 Identities=83% Similarity=1.368 Sum_probs=93.1
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N 80 (105)
||||+|+++.+.......+.+.+|+.+|+|||||++|+|..++.+|||+||++++...+.||+.+.+++++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999754322223466889999999999999999999999999999999998889999998888999999999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhhcC
Q 046287 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
+.+||++|..+.|+|.||+|||+++
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~l 105 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHL 105 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999965789999999999874
No 4
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.97 E-value=9.2e-31 Score=196.70 Aligned_cols=104 Identities=32% Similarity=0.572 Sum_probs=92.8
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCC-CCCCceEcCCCcEEEEEceeec
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~-~~~QP~~~~~~~~~lv~NGeI~ 79 (105)
||||+|++...... ...+.+.+|+.+|+|||||+.|+|..+++++||+||++++.. .+.||+.+.+++++++||||||
T Consensus 1 McGI~G~~~~~~~~-~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQA-PDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCc-chHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 99999999653222 234678999999999999999999999999999999999975 7899999888899999999999
Q ss_pred ChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 80 NHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 80 N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|+.||+++|. |+.|.|.||+||++++
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~ 107 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKA 107 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9999999997 8899999999999864
No 5
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.97 E-value=4.4e-31 Score=196.65 Aligned_cols=104 Identities=43% Similarity=0.684 Sum_probs=94.4
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N 80 (105)
||||+|++..++ .......+.+|..+|.|||||.+|+|...+..+||+||++++...+.||+...+++++++|||||||
T Consensus 1 MCGI~g~~~~~~-~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKN-LIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeecccc-cccchHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999998752 2122577999999999999999999999999999999999999999999988777899999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.|||++|. |+.|.|.||+|||+++
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~ 106 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTL 106 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHH
Confidence 999999998 8999999999999864
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.97 E-value=1.3e-30 Score=197.08 Aligned_cols=105 Identities=45% Similarity=0.754 Sum_probs=92.9
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N 80 (105)
||||+|+++.+.......+.+.+|+.+|.|||||++|+|..++++|||+|+++++...+.||+.+.+++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999644221123356889999999999999999999999999999999998789999998888999999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.||+++|. |+.|.|.||+|+|+++
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~ 107 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHA 107 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHH
Confidence 999999997 8899999999999863
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.7e-30 Score=189.83 Aligned_cols=101 Identities=24% Similarity=0.438 Sum_probs=88.0
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|++..+ ++++||+||++
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998643 23556789999999999999998843 36899999999
Q ss_pred eCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|||+.+||++|. |+.|+|+||+|+|+|+
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l 134 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHL 134 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9964 68999986 568899999999999999999997 8999999999999874
No 8
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.96 E-value=5.3e-30 Score=172.30 Aligned_cols=100 Identities=33% Similarity=0.486 Sum_probs=87.2
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~~ 54 (105)
|||+|+++... ....+..|+.+|+|||||++|++.. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999997532 2366889999999999999999976 3468999999999
Q ss_pred CCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.. .+.|||...+++++++|||+|||+.+||++|. |+.+++.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l 131 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHL 131 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 964 68999987667899999999999999999997 8899999999999864
No 9
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.7e-29 Score=185.63 Aligned_cols=101 Identities=27% Similarity=0.454 Sum_probs=87.9
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC----------------------------Cceeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~----------------------------~~~lg~~rl~ 52 (105)
||||||+++..+ ....+..++.+|+|||||++||++.+ ++++||+||+
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999998642 23567899999999999999998842 2589999999
Q ss_pred eeCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.|.. .+.||+.. .+++++++|||+|||+.+||++|. |+.|+|.||+|||+|+
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~L 145 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHL 145 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 99964 68999975 467899999999999999999998 8999999999999874
No 10
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.9e-29 Score=184.10 Aligned_cols=101 Identities=29% Similarity=0.425 Sum_probs=87.5
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC--------------------------Cceeeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~--------------------------~~~lg~~rl~~~ 54 (105)
||||+|+++..+ ....+..+|.+|+|||||++|+++.+ ++++||+||++.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998543 23668899999999999999999743 258999999999
Q ss_pred CCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|.. .+.||+.. ..++++++|||+|||+.+||++|. |+.|+|.||+||++|+
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~l 151 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAE 151 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 964 68999963 357899999999999999999998 8999999999999874
No 11
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=3.7e-29 Score=184.38 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=87.1
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||||+++.+.. ....+..+|.+|+|||||++||+..+ ++++||+||+|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985321 23566789999999999999997732 24899999999
Q ss_pred eCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||.. ..++++++|||+|||+.+||++|. |+.|++.||+|||+|+
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~l 167 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFA 167 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9974 58999975 347899999999999999999997 8999999999999874
No 12
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=3.7e-29 Score=182.41 Aligned_cols=100 Identities=25% Similarity=0.385 Sum_probs=87.0
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC--------------------------Cceeeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~--------------------------~~~lg~~rl~~~ 54 (105)
||||+|+++. +. ...+..+|.+|+|||||++|++..+ ++++||+||++.
T Consensus 4 ~CGI~G~~~~-~~----~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-NA----PKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-Cc----HHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 8999999983 22 3568899999999999999997732 468999999999
Q ss_pred CCCCCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPTSGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|...+.||+.. ..++++++|||+|||+.+||++|+ |+.|+|.||+|||+|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~l 133 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGIS 133 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHH
Confidence 98789999965 357899999999999999999997 8999999999999763
No 13
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=5.5e-29 Score=182.61 Aligned_cols=101 Identities=30% Similarity=0.480 Sum_probs=86.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||||+++..+ ....+..++.+|+|||||++|++..+ +.++||+|+++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998542 23567789999999999999998632 35789999999
Q ss_pred eCCC--CCCCceE--cCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLY--NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~--~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.||+. +.+++++++|||+|||+.+||++|. |+.|++.||+|||+|+
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~L 144 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHL 144 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9965 5899995 4567899999999999999999997 8999999999999874
No 14
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=7.4e-29 Score=182.33 Aligned_cols=101 Identities=30% Similarity=0.463 Sum_probs=87.1
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC----------------------------Cceeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~----------------------------~~~lg~~rl~ 52 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 23567789999999999999998732 2478999999
Q ss_pred eeCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.|.. .+.|||.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||+++
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~L 155 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHL 155 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 99964 68999976 367899999999999999999997 8899999999999874
No 15
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.6e-28 Score=181.66 Aligned_cols=101 Identities=30% Similarity=0.526 Sum_probs=86.0
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~ 53 (105)
||||||+++..+ ....+..|+.+|+|||||++|+++. +++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997532 2356788999999999999999983 356899999999
Q ss_pred eCCC--CCCCceE-cCCCcEEEEEceeecChHHHHHHhc---CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK---NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~-~~~~~~~lv~NGeI~N~~eL~~~l~---g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||. ....+++++|||+|+|+++||++|. +..|++.||+|+|+++
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~l 134 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNV 134 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHH
Confidence 9974 6899997 3445699999999999999999997 3588999999999874
No 16
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=2.4e-28 Score=179.29 Aligned_cols=101 Identities=30% Similarity=0.501 Sum_probs=86.4
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||||+++..+ ....+..++.+|+|||||++|+++.+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998643 23567789999999999999998632 24789999999
Q ss_pred eCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|+|+++||++|. |+.|++.||+|||+++
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~L 144 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHL 144 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9965 68899953 467899999999999999999997 8899999999999874
No 17
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.95 E-value=1.9e-28 Score=184.65 Aligned_cols=101 Identities=34% Similarity=0.500 Sum_probs=88.2
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+|+++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 2366889999999999999999872 346899999999
Q ss_pred eCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||.+..++++++|||+|||+++||++|. |+.|.+.||+|+++++
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l 132 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHL 132 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence 9964 68999987678999999999999999999997 8899999999999864
No 18
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.95 E-value=1.7e-28 Score=161.22 Aligned_cols=97 Identities=29% Similarity=0.385 Sum_probs=81.5
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe----CCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEce
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH----GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~----~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NG 76 (105)
||||+|+++...........+.+|+.+|+|||||+.+++.. .++.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999754322112356789999999999999999987 34789999999999877899998877789999999
Q ss_pred eecChHHHHHHhcCCCcccCChhhhhhcC
Q 046287 77 EIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 77 eI~N~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
||||+.+|++ +.||+|+|+++
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l 101 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFEL 101 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHH
Confidence 9999998864 78999999864
No 19
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.95 E-value=1.1e-27 Score=161.24 Aligned_cols=103 Identities=45% Similarity=0.752 Sum_probs=91.2
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecCh
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N~ 81 (105)
|||+|+++.+... ...+.+..|+.+|+|||||+.+++..++++++|+|+++.+...+.||+...+++++++|||+|||+
T Consensus 1 cGI~g~~~~~~~~-~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGAS-VDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCc-chHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 9999999754321 234678999999999999999999999999999999999877889999887789999999999999
Q ss_pred HHHHHHhc--CCCcccCChhhhhhcC
Q 046287 82 KQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.+|+++|. ++.+++.||+|+++++
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~ 105 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHL 105 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHH
Confidence 99999997 7788999999999863
No 20
>PLN02440 amidophosphoribosyltransferase
Probab=99.95 E-value=4.9e-28 Score=178.22 Aligned_cols=101 Identities=30% Similarity=0.477 Sum_probs=86.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997532 2366889999999999999999872 236899999999
Q ss_pred eCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||.. ..++++++|||+|+|+.+||++|. |+.|++.||+|+|+++
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~l 134 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHL 134 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9964 68999975 347799999999999999999997 7889999999999874
No 21
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=3.4e-28 Score=184.33 Aligned_cols=101 Identities=31% Similarity=0.445 Sum_probs=87.8
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC----------------------------------Ccee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG----------------------------------DCYL 46 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~----------------------------------~~~l 46 (105)
||||+|+++..+ ....+..++.+|+|||||++|++..+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999998543 23668899999999999999998832 1379
Q ss_pred eeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 47 AHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 47 g~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
||+||++.|.. .+.||+....++++++|||+|||+.+||++|. |+.|++.||+|+|+++
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~l 162 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANL 162 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHH
Confidence 99999999964 68999987668999999999999999999997 8999999999999874
No 22
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.95 E-value=1.2e-27 Score=175.73 Aligned_cols=102 Identities=47% Similarity=0.761 Sum_probs=89.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCce-EeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecChH
Q 046287 4 ILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-CHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHK 82 (105)
Q Consensus 4 I~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~-~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N~~ 82 (105)
|+|+++.++......+.+.+|+.+|+|||||++|+| ..++++|||+||++++...+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 678887654332234578999999999999999999 8889999999999999877799999988899999999999999
Q ss_pred HHHHHhc--CCCcccCChhhhhhcC
Q 046287 83 QLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 83 eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
||+++|. |+.|++.||+|+++++
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~ 105 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHL 105 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHH
Confidence 9999997 8999999999999864
No 23
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=9.9e-28 Score=176.24 Aligned_cols=103 Identities=27% Similarity=0.430 Sum_probs=86.9
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||+|+++.++.. ....+..++.+|+|||||++||+..+ ++++||+|+++
T Consensus 14 mCGI~Gi~~~~~~~--~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNID--VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCcc--HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 99999999864211 23557789999999999999998642 25789999999
Q ss_pred eCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||.. ..++++++|||+|+|+.+||++|. |+.|++.||+|+|+++
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~l 149 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNL 149 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9975 58999976 367899999999999999999997 7899999999999874
No 24
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.6e-27 Score=176.09 Aligned_cols=102 Identities=19% Similarity=0.335 Sum_probs=85.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||+|+++..+. ....+..++.+|+|||||++|+++.+ ++++||+|+++
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999985421 23566789999999999999998743 24899999999
Q ss_pred eCCC--CCCCceEcC---CCcEEEEEceeecChHHHHHHhc--CC-----CcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNE---DKTVVVTVNGEIYNHKQLREQLK--NH-----QFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~---~~~~~lv~NGeI~N~~eL~~~l~--g~-----~~~~~sD~evll~~ 105 (105)
.|.. .+.|||... .++++++|||+|||+.+||++|. |+ .|++.||+|+|+|+
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~L 163 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTAL 163 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHH
Confidence 9965 589999752 57899999999999999999997 55 48999999999874
No 25
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.95 E-value=2.4e-27 Score=162.47 Aligned_cols=101 Identities=31% Similarity=0.469 Sum_probs=85.3
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCC-CCCCceEe------------------------------------CCc
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGP-DWSGLHCH------------------------------------GDC 44 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGp-d~~g~~~~------------------------------------~~~ 44 (105)
|||+|+++..... .....+..|+.+|+|||| |++|++.. +.+
T Consensus 1 CGI~G~~~~~~~~-~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEP-FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCcc-ccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 9999999863211 124678899999999999 99999985 236
Q ss_pred eeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 45 YLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 45 ~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
++||+|+++.+.. .+.|||.. ++++++|||+|||+.+||++|. |+.|.+.||+|+++++
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~l 142 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYY 142 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 8999999998854 58999976 3899999999999999999997 8899999999999763
No 26
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.94 E-value=2.2e-27 Score=179.00 Aligned_cols=100 Identities=36% Similarity=0.526 Sum_probs=87.2
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 2367889999999999999999973 2458999999999
Q ss_pred CCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|.. .+.|||....++++++|||+|||+++||++|. |+.|++.||+|+|+++
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l 131 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHL 131 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHH
Confidence 964 68999987778899999999999999999997 7899999999999874
No 27
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.94 E-value=2.7e-27 Score=179.97 Aligned_cols=105 Identities=26% Similarity=0.344 Sum_probs=88.4
Q ss_pred CeEEEEEecCCC--CchhHHHHHHHHHHHhhhcCCCCCCceEe-----------------C-------------------
Q 046287 1 MCGILAVFGCID--NSQAKRSRIIELSRRLRHRGPDWSGLHCH-----------------G------------------- 42 (105)
Q Consensus 1 McGI~g~~~~~~--~~~~~~~~~~~ml~~l~~RGpd~~g~~~~-----------------~------------------- 42 (105)
||||||+++... ........+...|.+|+|||+|++||+.. +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998530 00013467889999999999999999875 1
Q ss_pred -----------------CceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhh
Q 046287 43 -----------------DCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEV 101 (105)
Q Consensus 43 -----------------~~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~ev 101 (105)
++++||+||++.|.. .+.||+.+.++++++||||+|||+.+||++|. |+.|+|+||+||
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 136899999999974 68899988778999999999999999999997 899999999999
Q ss_pred hhcC
Q 046287 102 IAHL 105 (105)
Q Consensus 102 ll~~ 105 (105)
|+||
T Consensus 161 i~~l 164 (670)
T PTZ00394 161 ISVL 164 (670)
T ss_pred HHHH
Confidence 9864
No 28
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.94 E-value=6.3e-27 Score=178.25 Aligned_cols=105 Identities=30% Similarity=0.416 Sum_probs=87.6
Q ss_pred CeEEEEEecCCCC--chhHHHHHHHHHHHhhhcCCCCCCceEeC------------------------------------
Q 046287 1 MCGILAVFGCIDN--SQAKRSRIIELSRRLRHRGPDWSGLHCHG------------------------------------ 42 (105)
Q Consensus 1 McGI~g~~~~~~~--~~~~~~~~~~ml~~l~~RGpd~~g~~~~~------------------------------------ 42 (105)
||||||+++.... .......+...|.+|+|||+|++||+..+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999984310 11234678899999999999999998731
Q ss_pred ------CceeeeeeeeeeCCC--CCCCceEcC-CCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 43 ------DCYLAHQRLAIVDPT--SGDQPLYNE-DKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 43 ------~~~lg~~rl~~~~~~--~~~QP~~~~-~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
++++||+||++.|.. .+.||+... .+.+++||||+|||+.+||++|. |+.|+|+||+|||+|+
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~l 154 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKL 154 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHH
Confidence 257899999999964 688999763 36899999999999999999997 8999999999999874
No 29
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.7e-26 Score=165.15 Aligned_cols=103 Identities=28% Similarity=0.503 Sum_probs=88.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCC----------------------------ceeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~----------------------------~~lg~~rl~ 52 (105)
||||||+++.++ . .....++.+|.+||||||++.||++.++ .++||+|++
T Consensus 4 ~CGV~Gi~~~~~-~-~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKD-N-NAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCc-c-chHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 899999998764 2 2346788999999999999999988654 277999999
Q ss_pred eeCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.|.. .+.|||.. ..+.++|+|||+|.|..+||++|. |..|+|.||+|+|+|+
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l 140 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHL 140 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHH
Confidence 99966 68899965 345699999999999999999998 8889999999999874
No 30
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.93 E-value=9.9e-26 Score=154.62 Aligned_cols=100 Identities=30% Similarity=0.507 Sum_probs=85.0
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+..|+|||||++|++..+ .++|||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998532 23567899999999999999998643 247999999999
Q ss_pred CCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.. .+.|||.. .+++++++|||+|+|+.+|+++|. ++.+.+.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l 133 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHL 133 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 875 58999975 357899999999999999999997 6788899999999863
No 31
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.93 E-value=1.6e-25 Score=163.65 Aligned_cols=101 Identities=28% Similarity=0.484 Sum_probs=85.2
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~~ 54 (105)
|||||+++..+. ....+..++.+|+|||||++|++..+ ++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999985421 23567789999999999999998632 468999999999
Q ss_pred CCC--CCCCceEc-CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~-~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|.. .+.|||.. ..++++++|||+|+|+.+|+++|. |+.|++.||+|+++++
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~l 133 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHL 133 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 974 68999974 345699999999999999999997 7889999999999864
No 32
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.4e-25 Score=166.81 Aligned_cols=100 Identities=34% Similarity=0.521 Sum_probs=88.1
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~~ 53 (105)
||||+|+++.+.. ..+.+.+.|++|.+||.|++|++..+ .+++||+||++
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999975432 34778999999999999999999863 15789999999
Q ss_pred eCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.+|..+ +++++||||-|-|+.+||++|. |+.|+|++|+|||.||
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hL 131 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHL 131 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHH
Confidence 9865 68899865 8999999999999999999998 9999999999999885
No 33
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=153.96 Aligned_cols=103 Identities=27% Similarity=0.435 Sum_probs=86.4
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCC----------------------------ceeeeeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~----------------------------~~lg~~rl~ 52 (105)
||||+|++...+.+ .-..+.....+|||||+|+.||.+.++ +++||.|++
T Consensus 1 eCGv~Gi~~a~~~~--~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEAS--RLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCccc--cCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 99999999865442 123455555799999999999998762 589999999
Q ss_pred eeCCC--CCCCceEc--CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
+.|.. .+.|||+. ..+.++++|||++.|+++||++|. |+.+.|.||+|+|+++
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~ 137 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQL 137 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHH
Confidence 99876 68999964 456799999999999999999998 8889999999999874
No 34
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.91 E-value=2.1e-24 Score=154.49 Aligned_cols=104 Identities=69% Similarity=1.118 Sum_probs=91.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N 80 (105)
||||+++++..+ +.............+.|||||-+|.+..+...|+|.||+++++..+.||++..++.+++..||||||
T Consensus 1 MCGI~Av~~~~~-~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHED-SEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeecccc-hhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 999999998432 2223345667778999999999999998888999999999999989999999889999999999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhhcC
Q 046287 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
+.+||+.+..+.|+|.||+|+|++|
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~l 104 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHL 104 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeeh
Confidence 9999999987899999999999985
No 35
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.90 E-value=2.6e-23 Score=138.92 Aligned_cols=101 Identities=37% Similarity=0.582 Sum_probs=85.1
Q ss_pred eEEEEEecCCCCchhHHHHH--HHHHHHhhhcCCCCCCceEeC---------------------------Cceeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRI--IELSRRLRHRGPDWSGLHCHG---------------------------DCYLAHQRLA 52 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~--~~ml~~l~~RGpd~~g~~~~~---------------------------~~~lg~~rl~ 52 (105)
|||+|+++...... ...+ ..|+..++|||||++|+++.+ .++++|.|++
T Consensus 1 Cgi~g~~~~~~~~~--~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~a 78 (220)
T cd00352 1 CGIFGIVGADGAAS--LLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLA 78 (220)
T ss_pred CEEEEEECCCCcch--hhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEee
Confidence 99999998653321 1222 479999999999999999875 5789999999
Q ss_pred eeCC--CCCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhc
Q 046287 53 IVDP--TSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 53 ~~~~--~~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~ 104 (105)
+.+. ..+.|||....++++++|||+|+|+.+|+++|. ++.+.+.+|+|++++
T Consensus 79 t~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~ 134 (220)
T cd00352 79 TNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILH 134 (220)
T ss_pred ecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHH
Confidence 9986 378999987657899999999999999999997 678899999999875
No 36
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=4.6e-21 Score=140.05 Aligned_cols=105 Identities=32% Similarity=0.464 Sum_probs=88.6
Q ss_pred CeEEEEEecCCCC--chhHHHHHHHHHHHhhhcCCCCCCceEeCC-----------------------------------
Q 046287 1 MCGILAVFGCIDN--SQAKRSRIIELSRRLRHRGPDWSGLHCHGD----------------------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~--~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~----------------------------------- 43 (105)
||||||+.++--. ...+.+.+...++.|.+||.|++|++.++.
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 9999999986322 223456788889999999999999987652
Q ss_pred ceeeeeeeeeeCCC--CCCCceEc-CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~-~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
++++|+||++.|.. .+-+|+.+ +.+.++++|||-|.|+++|+..|. |+.|.+++|+|.+..|
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL 147 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKL 147 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHH
Confidence 68999999999865 67899975 467799999999999999999998 9999999999998754
No 37
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.79 E-value=1.3e-19 Score=113.92 Aligned_cols=73 Identities=40% Similarity=0.685 Sum_probs=63.6
Q ss_pred CCCCCc--eEeCCceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 33 PDWSGL--HCHGDCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 33 pd~~g~--~~~~~~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
||..++ +..+.++++|+|+++.|.. .+.|||....++++++|||+|+|+.+|+++|. ++.|++.+|+|+|+++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~l 79 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAAL 79 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 666777 6677899999999999976 45599966778899999999999999999998 7889999999999864
No 38
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.66 E-value=8.9e-17 Score=110.42 Aligned_cols=100 Identities=25% Similarity=0.288 Sum_probs=74.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCC------------CCCCceEeC--------------------------
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGP------------DWSGLHCHG-------------------------- 42 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGp------------d~~g~~~~~-------------------------- 42 (105)
||+|+|+++.. .. ..+.+..-...|.+|+- |++|+.+..
T Consensus 1 MCr~~gy~g~~-~~--l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAP-VS--LADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCC-ee--HHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 99999999853 11 23455555556655553 899987742
Q ss_pred -----CceeeeeeeeeeCC-C--CCCCceEcCCCcEEEEEceeecChH-----HHHHHhc--CC-CcccCChhhhhhcC
Q 046287 43 -----DCYLAHQRLAIVDP-T--SGDQPLYNEDKTVVVTVNGEIYNHK-----QLREQLK--NH-QFRTGSDCEVIAHL 105 (105)
Q Consensus 43 -----~~~lg~~rl~~~~~-~--~~~QP~~~~~~~~~lv~NGeI~N~~-----eL~~~l~--g~-~~~~~sD~evll~~ 105 (105)
..+++|.|+++.|. . .+.|||.. ++++++|||.|.|++ +|+.+|. ++ .+.+.+|+|+++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~l 154 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFAL 154 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHH
Confidence 14789999999984 3 58999974 689999999999997 5666765 43 78899999988753
No 39
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.60 E-value=3.7e-16 Score=97.11 Aligned_cols=57 Identities=47% Similarity=0.798 Sum_probs=26.5
Q ss_pred eeeeeeeCCCCCCCceE-cCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhc
Q 046287 48 HQRLAIVDPTSGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 48 ~~rl~~~~~~~~~QP~~-~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~ 104 (105)
|+||++.+...+.||++ +.+++++++|||+|||++||+++|. |+.+.+.+|+|++++
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~ 60 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILH 60 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHH
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHH
Confidence 89999977778999998 5778899999999999999999997 678899999999865
No 40
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.53 E-value=5.1e-15 Score=101.95 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=52.1
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--C-CCcccCChhhhhhcC
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--N-HQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g-~~~~~~sD~evll~~ 105 (105)
.+++|.|+++.|.. .+.|||.. ++++++|||+|+|+++|+++|. + +.+.+.+|+|+++++
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~l 146 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFAL 146 (257)
T ss_pred EEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHH
Confidence 57899999999954 68899976 4899999999999999999997 4 578999999998763
No 41
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.48 E-value=3.2e-13 Score=96.94 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=46.0
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCccc----------------CChhhhhh
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRT----------------GSDCEVIA 103 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~----------------~sD~evll 103 (105)
++++|.|++|.+.. ...|||. +++|||||-|...++.++. +..+.+ .||+|++.
T Consensus 197 ~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~ 270 (361)
T PF00310_consen 197 FAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLD 270 (361)
T ss_dssp EEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHH
T ss_pred EEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHH
Confidence 58999999998766 5899996 7999999999999999997 777666 99999986
Q ss_pred c
Q 046287 104 H 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 271 ~ 271 (361)
T PF00310_consen 271 N 271 (361)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.21 E-value=5.5e-11 Score=85.21 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=43.4
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhc
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~ 104 (105)
++++|+|++|.... ..+|||.. +||||||-+..-.+++++ ++.+++..|+|++.+
T Consensus 204 ~~l~HsRFSTNT~p~W~~AHPfr~------lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~ 262 (371)
T COG0067 204 IALVHTRFSTNTFPSWPLAHPFRL------LVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAK 262 (371)
T ss_pred EEEEEeccCCCCCCCCCccCccee------eeecceecccccHHHHHHHhhcccccCccHHHHHH
Confidence 46777777765433 46788733 599999999999999998 899999999998754
No 43
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.21 E-value=1.3e-11 Score=82.35 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 60 ~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|++.. +++++++||||||+.||+++|. ++.|++.||+|||+++
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~ 89 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLL 89 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHH
Confidence 466633 5799999999999999999997 7889999999999874
No 44
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=99.16 E-value=2.2e-11 Score=84.61 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=38.8
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhc------CCCCCCceEeCC-----------------------------ce
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHR------GPDWSGLHCHGD-----------------------------CY 45 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~R------Gpd~~g~~~~~~-----------------------------~~ 45 (105)
||-++|+-...... +...+..++.| =||++|+.+..+ ..
T Consensus 1 MC~Llg~s~~~p~~------~~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~ 74 (271)
T PF13230_consen 1 MCRLLGMSSNRPTD------INFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLF 74 (271)
T ss_dssp -----------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEE
T ss_pred Cccccccccccccc------cccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEE
Confidence 99999997643211 22222333333 389999987542 47
Q ss_pred eeeeeeeeeCCC--CCCCceEcC--CCcEEEEEceeecChHHHHHHhcCCCcccCChhhhhhc
Q 046287 46 LAHQRLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAH 104 (105)
Q Consensus 46 lg~~rl~~~~~~--~~~QP~~~~--~~~~~lv~NGeI~N~~eL~~~l~g~~~~~~sD~evll~ 104 (105)
++|.|.++.|.. .+.|||... .++++++|||.|.+++.++... +.....+|||.+..
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~ 135 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFC 135 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHH
Confidence 899999998855 578999753 3679999999999988776332 34678999998764
No 45
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=98.93 E-value=3.8e-09 Score=77.04 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=55.0
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCC----ceeeeeeeeeeCCCCCCCceEcCCCcEEEEEce
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGD----CYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~----~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NG 76 (105)
||||+.-+.++.+. ........|...+..||||.+.-...+. +.+...-|+..| ....||.+.. +++++.|||
T Consensus 1 MCGI~~s~~~~~~l-~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLAL-NSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCccc-cccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 99999988765432 1234456788889999999877655443 233445566666 2468998764 559999999
Q ss_pred eecCh
Q 046287 77 EIYNH 81 (105)
Q Consensus 77 eI~N~ 81 (105)
||||.
T Consensus 78 eIyn~ 82 (520)
T KOG0573|consen 78 EIYNG 82 (520)
T ss_pred eeccC
Confidence 99983
No 46
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.67 E-value=3.5e-08 Score=66.72 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=34.1
Q ss_pred eEcCCCcEEEEEceeecChHHHHHHhcCCCcccCChhhhhhcC
Q 046287 63 LYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 63 ~~~~~~~~~lv~NGeI~N~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
+...++++++++||||||+.+|+++| +. .++.||+|+|+++
T Consensus 66 l~~~~~~~~~vfnGeIyN~~eLr~~l-g~-~~t~sD~evIl~l 106 (224)
T cd01910 66 LFAVKDDIFCLFQGHLDNLGSLKQQY-GL-SKTANEAMLVIEA 106 (224)
T ss_pred EECCCCCEEEEEEeEEcCHHHHHHHh-CC-CCCCcHHHHHHHH
Confidence 45566889999999999999999998 34 3688999998763
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.62 E-value=3.3e-08 Score=72.18 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=43.5
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CC-----------------CcccCChhhhh
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NH-----------------QFRTGSDCEVI 102 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~-----------------~~~~~sD~evl 102 (105)
.+++|+|++|.... ..+|||. +++|||||.|...+++++. .. ...+.||||++
T Consensus 203 ~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~l 276 (413)
T cd00713 203 FALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASL 276 (413)
T ss_pred EEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHH
Confidence 58999999997754 5789994 4899999999999999884 11 12358999987
Q ss_pred hc
Q 046287 103 AH 104 (105)
Q Consensus 103 l~ 104 (105)
.+
T Consensus 277 d~ 278 (413)
T cd00713 277 DN 278 (413)
T ss_pred HH
Confidence 54
No 48
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=98.39 E-value=7.9e-07 Score=61.36 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=53.3
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhh---hcCCCCCCceEeCC----------------------------ceeeee
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLR---HRGPDWSGLHCHGD----------------------------CYLAHQ 49 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~---~RGpd~~g~~~~~~----------------------------~~lg~~ 49 (105)
||-++|+.+..... .....+...... -.=+|++|+....+ ..++|.
T Consensus 1 MCrlLg~~g~~p~~---~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHv 77 (252)
T COG0121 1 MCRLLGMHGNPPTD---SLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHV 77 (252)
T ss_pred CceeeeecCCCcch---hhhhhccchhhccCCCCCCCcceEEEEcCCccEEEeCCCccccchhhhhcccccCccEEEEEE
Confidence 99999998854211 111111111111 12268899877542 478999
Q ss_pred eeeeeCCC--CCCCceEcC--CCcEEEEEceeecChHH
Q 046287 50 RLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQ 83 (105)
Q Consensus 50 rl~~~~~~--~~~QP~~~~--~~~~~lv~NGeI~N~~e 83 (105)
|.++.|.. .+.|||..+ ...+.++|||.|.+++.
T Consensus 78 R~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~ 115 (252)
T COG0121 78 RKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKL 115 (252)
T ss_pred eccCCCcccccCCCCccccCCccceEEEecCcccCccc
Confidence 99999954 588999764 34579999999999887
No 49
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.23 E-value=0.019 Score=48.15 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=26.7
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHH
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQ 87 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~ 87 (105)
+++.|.|+||.-.. ..+|||. .++|||||=-..--+.+
T Consensus 214 ~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nw 253 (1485)
T PRK11750 214 ICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQW 253 (1485)
T ss_pred EEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHH
Confidence 57899999985443 5688883 37999999744444443
No 50
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=86.39 E-value=0.59 Score=30.21 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.3
Q ss_pred CcEEEEEceeecChHHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4789999999999887765
No 51
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=86.24 E-value=0.61 Score=30.16 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.3
Q ss_pred CcEEEEEceeecChHHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4789999999999887765
No 52
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=81.98 E-value=1.5 Score=29.13 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhc
Q 046287 58 SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 58 ~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~ 104 (105)
...|.+....+...+. |.|||..-|+.-.. .-....-+|+|+++.
T Consensus 39 ~~~qk~~~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~ 85 (201)
T PF09147_consen 39 TPFQKMRFERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYT 85 (201)
T ss_dssp --EEEEEETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHH
T ss_pred CceeEEEecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHH
Confidence 3446665554444444 99999998887664 222345789999853
No 53
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=73.22 E-value=1.8 Score=36.80 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=22.4
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeec
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~ 79 (105)
.+|.|+|+++.-.. .-+||+. ++.|||||-
T Consensus 286 ~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEIN 317 (2142)
T KOG0399|consen 286 FALVHSRFSTNTFPSWDRAQPMR------FLAHNGEIN 317 (2142)
T ss_pred ceeeeeccccCCCCCccccccch------hhhccCcee
Confidence 68899999875432 5678872 479999995
No 54
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=73.15 E-value=7.4 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCc-hhHHHHHHHHHHHhhhcCCCC
Q 046287 2 CGILAVFGCIDNS-QAKRSRIIELSRRLRHRGPDW 35 (105)
Q Consensus 2 cGI~g~~~~~~~~-~~~~~~~~~ml~~l~~RGpd~ 35 (105)
|||-.+...+... ....+.-..+|..|.|||--+
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~ 35 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVG 35 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCccc
Confidence 9996555554433 223345667888999999643
No 55
>PF04641 Rtf2: Rtf2 RING-finger
Probab=72.06 E-value=2.6 Score=29.28 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=26.4
Q ss_pred eeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecChHHHHHHhc
Q 046287 45 YLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 45 ~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
-|-||.|+ .||+.. ++|....|.|||.+.|-..|.
T Consensus 33 ~w~~CaLS-------~~pL~~---PiV~d~~G~LynKeaile~Ll 67 (260)
T PF04641_consen 33 RWTHCALS-------QQPLED---PIVSDRLGRLYNKEAILEFLL 67 (260)
T ss_pred CcCcccCc-------CCccCC---CeeeCCCCeeEcHHHHHHHHH
Confidence 35566655 478744 566677899999999999986
No 56
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=67.62 E-value=4.6 Score=22.71 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=13.2
Q ss_pred CCCcEEEEEceeecCh
Q 046287 66 EDKTVVVTVNGEIYNH 81 (105)
Q Consensus 66 ~~~~~~lv~NGeI~N~ 81 (105)
+++...+++||++|+-
T Consensus 15 ~nGpaYiA~~G~VYDv 30 (81)
T COG4892 15 ENGPAYIAVNGTVYDV 30 (81)
T ss_pred CCCCeEEEECCEEEee
Confidence 4677889999999973
No 57
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=60.59 E-value=6.4 Score=21.29 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=14.3
Q ss_pred eEcCCCcEEEEEceeecC
Q 046287 63 LYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 63 ~~~~~~~~~lv~NGeI~N 80 (105)
+...++.+.|-|||.+|-
T Consensus 33 Lfgg~~~i~I~H~Ga~Y~ 50 (63)
T COG4256 33 LFGGDGKIIIDHDGAEYL 50 (63)
T ss_pred cccCCCeEEEecCCceEE
Confidence 334568899999999986
No 58
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=58.97 E-value=10 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.8
Q ss_pred CCcEEEEEceeecC
Q 046287 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~lv~NGeI~N 80 (105)
.+.+.|.|+|+.|-
T Consensus 12 ~~ev~I~H~g~~Y~ 25 (38)
T PF10636_consen 12 GREVRIEHGGQIYR 25 (38)
T ss_dssp TSEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 46789999999985
No 59
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=57.35 E-value=4.5 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=20.4
Q ss_pred CCcEEEEEceeecChHHHHHHhcC
Q 046287 67 DKTVVVTVNGEIYNHKQLREQLKN 90 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l~g 90 (105)
-|.++-+|||.-||..|++-|..|
T Consensus 97 vGs~VGVyNGK~FnqvEiKPEMIG 120 (152)
T KOG0898|consen 97 VGSMVGVYNGKTFNQVEIKPEMIG 120 (152)
T ss_pred hcceEEEecCcccceeeccHHHHh
Confidence 367899999999999998887753
No 60
>PRK10183 hypothetical protein; Provisional
Probab=54.16 E-value=11 Score=20.12 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=12.1
Q ss_pred CCcEEEEEceeecC
Q 046287 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~lv~NGeI~N 80 (105)
.+.+.|.|||+.|-
T Consensus 30 ~~~v~I~H~G~~Y~ 43 (56)
T PRK10183 30 DGKVIIDHDGQEYL 43 (56)
T ss_pred CCEEEEEECCcEEE
Confidence 56789999999985
No 61
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=41.28 E-value=9.6 Score=24.54 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=15.8
Q ss_pred cEEEEEceeecChHHHHHHh
Q 046287 69 TVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 69 ~~~lv~NGeI~N~~eL~~~l 88 (105)
.+-+++|||-||.+.+-.++
T Consensus 95 DLRVCYNGEWy~tr~vs~~a 114 (155)
T PF10777_consen 95 DLRVCYNGEWYNTRFVSDQA 114 (155)
T ss_pred EEeEEEcceeeeeccCCHHH
Confidence 46789999999987766554
No 62
>PHA02104 hypothetical protein
Probab=39.53 E-value=11 Score=21.18 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.2
Q ss_pred cEEEEEceeecCh
Q 046287 69 TVVVTVNGEIYNH 81 (105)
Q Consensus 69 ~~~lv~NGeI~N~ 81 (105)
.-.+++||.|||.
T Consensus 51 s~yfa~~gkiyna 63 (89)
T PHA02104 51 STYFAQNGKIYNA 63 (89)
T ss_pred eeeehhCCeEEee
Confidence 3468899999984
No 63
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=37.42 E-value=24 Score=19.11 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=14.6
Q ss_pred CCcEEEEEceeecChHHH
Q 046287 67 DKTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL 84 (105)
+++.+++.+|.+|+-.+.
T Consensus 13 ~~~~~v~i~g~VYDvt~~ 30 (76)
T PF00173_consen 13 KGDCWVIIDGKVYDVTDF 30 (76)
T ss_dssp TTEEEEEETTEEEECTTT
T ss_pred CCCEEEEECCEEcccccc
Confidence 467889999999996664
No 64
>PRK06764 hypothetical protein; Provisional
Probab=37.28 E-value=36 Score=19.87 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.3
Q ss_pred cCCCcEEEEEceeecCh
Q 046287 65 NEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 65 ~~~~~~~lv~NGeI~N~ 81 (105)
+.++.+++--||-|||.
T Consensus 81 ~kpg~yvirvngciy~d 97 (105)
T PRK06764 81 SKPGKYVIRVNGCIYND 97 (105)
T ss_pred cCCccEEEEEccEEeee
Confidence 35688999999999993
No 65
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=36.23 E-value=3.5 Score=25.22 Aligned_cols=8 Identities=63% Similarity=1.327 Sum_probs=6.3
Q ss_pred CeEEEEEe
Q 046287 1 MCGILAVF 8 (105)
Q Consensus 1 McGI~g~~ 8 (105)
||||.|-+
T Consensus 83 MCgILgTi 90 (130)
T PF02960_consen 83 MCGILGTI 90 (130)
T ss_pred HHHHHHHH
Confidence 89998854
No 66
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=33.00 E-value=54 Score=17.52 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.0
Q ss_pred CCcEEEEEceeecChHHHHHHhc
Q 046287 67 DKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
...+++++|++|..+.+....|.
T Consensus 29 ~~~vav~~N~~iv~r~~~~~~L~ 51 (65)
T PRK05863 29 EKGIAVAVDWSVLPRSDWATKLR 51 (65)
T ss_pred CCcEEEEECCcCcChhHhhhhcC
Confidence 35789999999999887766543
No 67
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=29.53 E-value=98 Score=20.06 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcCC
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGP 33 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGp 33 (105)
|--|+||+++++ +. +--.+++++..|..||-
T Consensus 1 m~~Il~ivG~k~-SG-KTTLie~lv~~L~~~G~ 31 (161)
T COG1763 1 MMKILGIVGYKN-SG-KTTLIEKLVRKLKARGY 31 (161)
T ss_pred CCcEEEEEecCC-CC-hhhHHHHHHHHHHhCCc
Confidence 445788888764 21 23568899999999994
No 68
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=27.60 E-value=43 Score=15.95 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.7
Q ss_pred EEEEceeecCh
Q 046287 71 VVTVNGEIYNH 81 (105)
Q Consensus 71 ~lv~NGeI~N~ 81 (105)
.+.|||.+|-.
T Consensus 15 ~V~~~g~~y~a 25 (41)
T PF02839_consen 15 RVSYNGKLYQA 25 (41)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCCEEEE
Confidence 57899999853
No 69
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=27.46 E-value=54 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=8.9
Q ss_pred EEEceeecChHHHHHHh
Q 046287 72 VTVNGEIYNHKQLREQL 88 (105)
Q Consensus 72 lv~NGeI~N~~eL~~~l 88 (105)
|+|.|+--+++.|-++|
T Consensus 22 I~F~G~~~~re~LEeeL 38 (194)
T PF09894_consen 22 IAFRGDEEKREKLEEEL 38 (194)
T ss_pred eeecCCHHHHHHHHHHH
Confidence 45555555555555544
No 70
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=26.66 E-value=48 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.8
Q ss_pred CCcEEEEEceeecChHHHHHHhc
Q 046287 67 DKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
+.++.++-||.||+...=|+.+.
T Consensus 72 d~~Il~AI~G~VYDVT~Gr~FYG 94 (183)
T KOG1110|consen 72 DKPILLAINGKVYDVTRGREFYG 94 (183)
T ss_pred CCceEEEecceEEEecCCccccC
Confidence 56799999999999766555553
No 71
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=26.32 E-value=2.3e+02 Score=19.67 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCcEEEEEceeecChHHHHHHh
Q 046287 67 DKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l 88 (105)
-+.+..+|-|.|.|-..|++++
T Consensus 74 ~DdIfCiF~G~L~Nl~~L~qqY 95 (228)
T PF12481_consen 74 VDDIFCIFLGSLENLCSLRQQY 95 (228)
T ss_pred cCCEEEEEecchhhHHHHHHHh
Confidence 3578899999999999999998
No 72
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.97 E-value=91 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=23.4
Q ss_pred ceEcCCCcEEE-EEceeecChHHHHHHhc
Q 046287 62 PLYNEDKTVVV-TVNGEIYNHKQLREQLK 89 (105)
Q Consensus 62 P~~~~~~~~~l-v~NGeI~N~~eL~~~l~ 89 (105)
|+...++++++ ++.+.|.|..+|.++|.
T Consensus 167 pviTDnGN~IlDv~~~~i~dp~~le~~l~ 195 (227)
T COG0120 167 PVITDNGNYILDVHFGRIEDPEELEKELN 195 (227)
T ss_pred CEEeeCCCEEEEecCCCcCCHHHHHHHHh
Confidence 88776677655 58899999999999996
No 73
>PRK07440 hypothetical protein; Provisional
Probab=25.48 E-value=93 Score=16.99 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.5
Q ss_pred CCcEEEEEceeecChHHH
Q 046287 67 DKTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL 84 (105)
...++++.||+|..+.+.
T Consensus 33 ~~~vav~~N~~iv~r~~w 50 (70)
T PRK07440 33 PRLVAVEYNGEILHRQFW 50 (70)
T ss_pred CCeEEEEECCEEeCHHHc
Confidence 357999999999986554
No 74
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=51 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.1
Q ss_pred CCCcEEEEEceeecChHHHHHHhc
Q 046287 66 EDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 66 ~~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
..+-.++--+|++|+.+.++..|.
T Consensus 83 ~kg~~v~~prGr~y~~~nI~~~L~ 106 (150)
T COG1671 83 DKGAAVLNPRGRLYTEENIGERLA 106 (150)
T ss_pred hcCCEEECCCCcccCHhHHHHHHH
Confidence 356788999999999999988774
No 75
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=24.58 E-value=60 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=14.9
Q ss_pred CCcEEEEEceeecChHHHHH
Q 046287 67 DKTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~ 86 (105)
.+..+|+.+|.+||-.....
T Consensus 18 ~~d~Wvii~gkVYDvT~Fl~ 37 (124)
T KOG0537|consen 18 KDDCWVIIHGKVYDVTSFLD 37 (124)
T ss_pred CCCeEEEECCEEEeccchhh
Confidence 45678899999999665544
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=44 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCceEcCCCcEEEEEceeecChHHHHHHh
Q 046287 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 60 ~QP~~~~~~~~~lv~NGeI~N~~eL~~~l 88 (105)
.||+.++ ++..+|-||.++.|.+..
T Consensus 50 LqPc~dP----vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 50 LQPCRDP----VITPDGYLFDREAILEYI 74 (303)
T ss_pred cccccCC----ccCCCCeeeeHHHHHHHH
Confidence 5888553 789999999988776543
No 77
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=24.34 E-value=44 Score=25.48 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=11.4
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-||+||++
T Consensus 238 D~KiVvy~~eVYNyD 252 (502)
T PF01589_consen 238 DNKIVVYKGEVYNYD 252 (502)
T ss_dssp SSEEEEESSEEEE--
T ss_pred CceEEEEcceeeccc
Confidence 466899999999976
No 78
>PRK00124 hypothetical protein; Validated
Probab=23.37 E-value=62 Score=20.86 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCcEEEEEceeecChHHHHHHhc
Q 046287 67 DKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
.+-.+|-.+|++|+.+.+...|.
T Consensus 85 Kga~vl~prG~~yt~~nI~~~L~ 107 (151)
T PRK00124 85 KGAIVLNPRGYIYTNDNIDQLLA 107 (151)
T ss_pred CCCEEECCCCcCCCHHHHHHHHH
Confidence 56789999999999988887773
No 79
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.26 E-value=1.5e+02 Score=18.71 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=19.9
Q ss_pred eeeeCCCCCCCceEcC---CCcEEEEEceeecC
Q 046287 51 LAIVDPTSGDQPLYNE---DKTVVVTVNGEIYN 80 (105)
Q Consensus 51 l~~~~~~~~~QP~~~~---~~~~~lv~NGeI~N 80 (105)
.+..+..+..|||.+. ++=+++|-|+.+..
T Consensus 58 fW~rde~g~n~Pfs~~~~a~~LlI~V~de~~~G 90 (145)
T COG4815 58 FWQRDEGGQNQPFSDDGMAAGLLIFVIDEVLRG 90 (145)
T ss_pred EEEeCCCCCcCCCCcccccCeeEEEEEccccce
Confidence 3555666788999652 34467888887654
No 80
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=23.19 E-value=1e+02 Score=15.56 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=13.5
Q ss_pred CCCcEEEEEceeecChHH
Q 046287 66 EDKTVVVTVNGEIYNHKQ 83 (105)
Q Consensus 66 ~~~~~~lv~NGeI~N~~e 83 (105)
..++..|+++|-.|....
T Consensus 5 ~~g~~~L~~~Gy~y~~~~ 22 (62)
T PF04500_consen 5 RRGRPKLVYDGYRYYFNK 22 (62)
T ss_dssp TTTEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCeEEECcC
Confidence 456778999999887544
No 81
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.67 E-value=1.1e+02 Score=17.51 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCcEEEEEceeecChHHHH
Q 046287 67 DKTVVVTVNGEIYNHKQLR 85 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~ 85 (105)
...++++.||+|....+..
T Consensus 47 ~~~vAVevNg~iVpr~~w~ 65 (84)
T PRK06083 47 ELGCVFAINNQVVPRSEWQ 65 (84)
T ss_pred CceEEEEECCEEeCHHHcC
Confidence 4678999999999866543
No 82
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.52 E-value=89 Score=17.49 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=17.0
Q ss_pred hHHHHHHhc--CCCcccCChhhhh
Q 046287 81 HKQLREQLK--NHQFRTGSDCEVI 102 (105)
Q Consensus 81 ~~eL~~~l~--g~~~~~~sD~evl 102 (105)
..++.+.|. |+.+.-.+|.|+.
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~~~~ 78 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDDELA 78 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCCHHH
Confidence 667777777 8888878888875
No 83
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=20.83 E-value=43 Score=18.77 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=18.8
Q ss_pred CCcEEEEEceeecChHHHHHHhc---CCCccc
Q 046287 67 DKTVVVTVNGEIYNHKQLREQLK---NHQFRT 95 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~~~l~---g~~~~~ 95 (105)
++.+++.+||+|-=.+-|.+.|. |..+++
T Consensus 37 ~D~y~i~~~geIvL~eNl~~YLie~lg~e~k~ 68 (71)
T PF09466_consen 37 GDDYFISPDGEIVLEENLKRYLIEQLGFEFKT 68 (71)
T ss_dssp TS-EEE-ETTEEEECCCHHHHHHHTTTEEEE-
T ss_pred CCeEEEeCCCcEEehhhHHHHHHHHcCeEEee
Confidence 45677779999987777888876 444443
No 84
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=20.60 E-value=1.1e+02 Score=18.84 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=9.9
Q ss_pred CCcEEEEEceeec
Q 046287 67 DKTVVVTVNGEIY 79 (105)
Q Consensus 67 ~~~~~lv~NGeI~ 79 (105)
.+.+.+..||++|
T Consensus 110 ~G~Is~~~~G~~y 122 (122)
T PF02457_consen 110 TGTISLAYGGKLY 122 (122)
T ss_dssp TS-EEEEETTEE-
T ss_pred CCcEEEEECCEEC
Confidence 4889999999998
No 85
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=20.42 E-value=83 Score=16.41 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=11.6
Q ss_pred CceE-cCCCcEEEEEceeecCh
Q 046287 61 QPLY-NEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 61 QP~~-~~~~~~~lv~NGeI~N~ 81 (105)
+.++ +.++++.+. |+||+-
T Consensus 34 ~i~Y~~~dg~yli~--G~l~d~ 53 (57)
T PF10411_consen 34 GILYVDEDGRYLIQ--GQLYDL 53 (57)
T ss_dssp EEEEEETTSSEEEE--S-EEE-
T ss_pred eEEEEcCCCCEEEE--eEEEec
Confidence 4543 567887666 999874
No 86
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.11 E-value=80 Score=16.07 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=11.0
Q ss_pred eeecChHHHHHHhc
Q 046287 76 GEIYNHKQLREQLK 89 (105)
Q Consensus 76 GeI~N~~eL~~~l~ 89 (105)
+-=|++++||++|.
T Consensus 8 ~~dydreqlrreln 21 (48)
T PF10845_consen 8 QHDYDREQLRRELN 21 (48)
T ss_pred ccccCHHHHHHHHH
Confidence 44588999999885
Done!