Query 046287
Match_columns 105
No_of_seqs 110 out of 1276
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 8.1E-30 2.8E-34 189.5 10.6 104 2-105 1-105 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 2.5E-29 8.7E-34 170.2 9.8 98 2-105 1-130 (240)
3 1ao0_A Glutamine phosphoribosy 99.9 8.7E-28 3E-32 175.3 8.9 100 2-105 1-134 (459)
4 1ecf_A Glutamine phosphoribosy 99.9 6.8E-27 2.3E-31 172.2 10.3 100 2-105 1-134 (504)
5 2bpl_A Glucosamine--fructose-6 99.9 4.6E-27 1.6E-31 176.2 9.1 98 2-105 1-130 (608)
6 1te5_A Conserved hypothetical 99.8 5.6E-23 1.9E-27 140.4 -4.1 96 1-105 1-135 (257)
7 3mdn_A Glutamine aminotransfer 99.8 4.9E-21 1.7E-25 131.9 2.9 103 1-105 3-151 (274)
8 1jgt_A Beta-lactam synthetase; 99.4 1.2E-13 4.1E-18 102.0 2.2 45 60-105 57-105 (513)
9 1q15_A CARA; CMPR, (2S,5S)-5-c 99.3 6.7E-13 2.3E-17 97.8 2.8 60 42-105 26-88 (503)
10 1ea0_A Glutamate synthase [NAD 98.8 2.1E-09 7.1E-14 86.6 4.5 80 18-103 145-278 (1479)
11 1ofd_A Ferredoxin-dependent gl 98.8 4.3E-09 1.5E-13 85.1 5.9 81 18-104 145-276 (1520)
12 1ofd_A Ferredoxin-dependent gl 76.6 3.4 0.00012 34.6 4.7 31 2-32 1-32 (1520)
13 1ea0_A Glutamate synthase [NAD 69.5 4.9 0.00017 33.6 4.0 32 2-33 1-33 (1479)
14 2loj_A Putative cytoplasmic pr 57.5 6.6 0.00023 20.7 1.9 14 67-80 37-50 (63)
15 2jra_A Protein RPA2121; domain 52.0 8.1 0.00028 20.6 1.7 14 67-80 41-54 (67)
16 3noh_A Putative peptide bindin 43.7 15 0.0005 22.1 2.1 35 67-101 20-60 (139)
17 1abz_A Alpha-T-alpha, ATA; de 43.1 24 0.00084 16.1 2.4 18 19-36 6-23 (40)
18 4gmk_A Ribose-5-phosphate isom 33.1 28 0.00094 23.0 2.3 30 60-89 166-196 (228)
19 2pjm_A Ribose-5-phosphate isom 31.4 47 0.0016 21.8 3.3 31 59-89 166-196 (226)
20 2ibj_A Cytochrome B5, CYTB5; F 25.5 31 0.0011 18.9 1.4 17 68-84 21-37 (88)
21 1cyo_A Cytochrome B5; electron 24.8 32 0.0011 19.1 1.4 17 68-84 19-35 (93)
22 3ixq_A Ribose-5-phosphate isom 24.8 76 0.0026 20.9 3.4 31 59-89 166-196 (226)
23 1x3x_A Cytochrome B5; hemoprot 24.6 33 0.0011 18.5 1.4 18 68-85 18-35 (82)
24 3j0f_E E1 envelope glycoprotei 24.4 29 0.00098 24.9 1.3 15 68-82 174-188 (439)
25 1i9w_A Fusion protein E1; enve 23.8 29 0.00099 24.5 1.2 15 68-82 174-188 (390)
26 1cxy_A Cytochrome B5; helix, b 23.6 35 0.0012 18.8 1.4 19 68-86 22-40 (90)
27 1hko_A Cytochrome B5; electron 23.4 28 0.00097 19.9 1.0 17 68-84 23-39 (104)
28 3ner_A Cytochrome B5 type B; h 23.3 36 0.0012 18.9 1.4 18 67-84 23-40 (92)
29 3lf5_A Cytochrome B5 reductase 23.2 36 0.0012 18.7 1.4 18 68-85 20-37 (88)
30 3j0c_A E1 envelope glycoprotei 23.2 30 0.001 24.9 1.2 15 68-82 174-188 (442)
31 3n40_F E1 envelope glycoprotei 22.3 26 0.0009 24.7 0.8 15 68-82 176-190 (393)
32 3id1_A Regulator of sigma E pr 21.3 1E+02 0.0034 16.7 3.0 23 67-89 22-45 (95)
33 2keo_A Probable E3 ubiquitin-p 20.5 55 0.0019 19.0 1.8 20 68-87 38-57 (112)
34 3n44_F E1 envelope glycoprotei 20.2 31 0.0011 24.9 0.8 15 68-82 196-210 (473)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=99.96 E-value=8.1e-30 Score=189.47 Aligned_cols=104 Identities=53% Similarity=0.893 Sum_probs=91.9
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeCCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecCh
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N~ 81 (105)
|||+|+++.+.........+.+|+.+|+|||||++|+|..++++|||+||++.|...+.||+.+.+++++++|||||||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998653222234668899999999999999999999999999999999987889999988789999999999999
Q ss_pred HHHHHHhc-CCCcccCChhhhhhcC
Q 046287 82 KQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~eL~~~l~-g~~~~~~sD~evll~~ 105 (105)
.+||++|. .+.|++.||+|||+++
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l 105 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILAL 105 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHH
T ss_pred HHHHHHHhccCccCCCCcHHHHHHH
Confidence 99999997 5779999999999864
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.96 E-value=2.5e-29 Score=170.24 Aligned_cols=98 Identities=40% Similarity=0.550 Sum_probs=85.9
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCce-Ee---------------------------CCceeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-CH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~-~~---------------------------~~~~lg~~rl~~ 53 (105)
|||+|+++.++. ...+..|+.+|+|||||++|++ .. +++++||+|+++
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 2668899999999999999999 53 457899999999
Q ss_pred eCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||.. ++++++|||+|||+.+||++|. |+.|.+.||+|+|+++
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l 130 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHL 130 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHH
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 9863 68999987 6899999999999999999997 8999999999999863
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.95 E-value=8.7e-28 Score=175.30 Aligned_cols=100 Identities=31% Similarity=0.517 Sum_probs=83.8
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe---------------------------CCceeeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~---------------------------~~~~lg~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+.+|+|||||++|++.. ++.++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHEE----APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCTB----HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 99999998642 2355779999999999999999986 3468999999999
Q ss_pred CCC--CCCCceEc---CCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 55 DPT--SGDQPLYN---EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~---~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
|.. .+.|||.. .+++++++|||+|||+.+||++|. |+.|++.||+|+|+++
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l 134 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHL 134 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHH
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 975 58999986 467899999999999999999997 8899999999999864
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.94 E-value=6.8e-27 Score=172.23 Aligned_cols=100 Identities=27% Similarity=0.489 Sum_probs=85.4
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEeC----------------------------Cceeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCHG----------------------------DCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~~----------------------------~~~lg~~rl~~ 53 (105)
|||+|+++..+. ...+..|+.+|+|||||++|++..+ ++++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999986432 2468899999999999999999864 46899999999
Q ss_pred eCCC--CCCCceEcC-CCcEEEEEceeecChHHHHHHhc---CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNE-DKTVVVTVNGEIYNHKQLREQLK---NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~-~~~~~lv~NGeI~N~~eL~~~l~---g~~~~~~sD~evll~~ 105 (105)
.|.. .+.|||... +++++++|||+|||+.+||++|. ++.|.+.||+|+|+++
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l 134 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNI 134 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHH
Confidence 9975 689999753 35699999999999999999997 3779999999999864
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.94 E-value=4.6e-27 Score=176.20 Aligned_cols=98 Identities=40% Similarity=0.542 Sum_probs=86.4
Q ss_pred eEEEEEecCCCCchhHHHHHHHHHHHhhhcCCCCCCceEe----------------------------CCceeeeeeeee
Q 046287 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCH----------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RGpd~~g~~~~----------------------------~~~~lg~~rl~~ 53 (105)
|||+|+++.++. ...+..|+..|+|||||++|++.. +++++||+|+++
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999986532 366889999999999999999976 346899999999
Q ss_pred eCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--CCCcccCChhhhhhcC
Q 046287 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g~~~~~~sD~evll~~ 105 (105)
.|.. .+.||+.+ ++++++|||+|||+.+||++|. |+.|.+.||+|+|+++
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l 130 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHL 130 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHH
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 9863 68899987 7899999999999999999998 8999999999999874
No 6
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.83 E-value=5.6e-23 Score=140.45 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=75.5
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhcC------CCCCCceEeC-----------------------------Cce
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRG------PDWSGLHCHG-----------------------------DCY 45 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG------pd~~g~~~~~-----------------------------~~~ 45 (105)
||||+|+++..+ . . +.-.+.+|+||| +|++||++.+ .++
T Consensus 1 MCgi~G~~~~~~-~----~-~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-T----D-IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-E----E-CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-c----c-HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997432 1 1 222678899999 7999998753 147
Q ss_pred eeeeeeeeeCCC--CCCCceEcC--CCcEEEEEceeecChHHHHHHhcCCCcccCChhhhhhcC
Q 046287 46 LAHQRLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 46 lg~~rl~~~~~~--~~~QP~~~~--~~~~~lv~NGeI~N~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
+||+|+++.|.. .+.|||... .++++++|||.|.|+++ |+++ +.|.+.||+|+|+++
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~--~~~~s~TDSEvi~~l 135 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGF--YRPVGETDSEAAFCD 135 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCS--SCCSSCCHHHHHHHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhcc--CCcccCCHHHHHHHH
Confidence 899999999865 589999763 46899999999999999 6553 569999999999864
No 7
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.81 E-value=4.9e-21 Score=131.88 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=58.7
Q ss_pred CeEEEEEecCCCCchhHHHHHHHHHHHhhhc--------CCCCCCceEeCC-----------------------------
Q 046287 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHR--------GPDWSGLHCHGD----------------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~R--------Gpd~~g~~~~~~----------------------------- 43 (105)
||+++|+.+...............+..+.++ .+|++||.+.++
T Consensus 3 MCR~~~y~g~~~~l~~ll~~p~~sL~~qs~~~~~~~~~~~~Dg~GIa~~~~~~~~~~~r~~~p~~~~~~l~~l~~~~~g~ 82 (274)
T 3mdn_A 3 LCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNLRAVAHHVRSG 82 (274)
T ss_dssp -CCEEEEEEEEEEGGGTC------------------------CEEEEEESSSSSCEEEEESSCGGGCHHHHHHHHHCEEE
T ss_pred ccceeeecCCCccHHHHHhCccccHHHHhhhhhhcCCCCCCCeeEEEEEcCCCcEEEEecCCcccCcHHHHHHhhcCCCC
Confidence 9999999983211110011122223333444 889999977531
Q ss_pred ceeeeeeeeeeCCC--CCCCceEcCCCcEEEEEceeecChHHHHHHhc--C--CCc---ccCChhhhhhcC
Q 046287 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--N--HQF---RTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~lg~~rl~~~~~~--~~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~--g--~~~---~~~sD~evll~~ 105 (105)
+++||+|+++.|.. .+.|||.. ++++++|||+|+|+.+||++|. | +.| .+.||+|+|+++
T Consensus 83 ~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l 151 (274)
T 3mdn_A 83 LFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLL 151 (274)
T ss_dssp EEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHH
T ss_pred EEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHH
Confidence 47899999998854 68999986 6899999999999999999997 4 334 689999999863
No 8
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.37 E-value=1.2e-13 Score=102.03 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=39.5
Q ss_pred CCceEcC----CCcEEEEEceeecChHHHHHHhcCCCcccCChhhhhhcC
Q 046287 60 DQPLYNE----DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 60 ~QP~~~~----~~~~~lv~NGeI~N~~eL~~~l~g~~~~~~sD~evll~~ 105 (105)
.||+... .++++++|||||||+.|||++|. +.|+|.||+|+|+++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l 105 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRL 105 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHH
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHH
Confidence 6888653 37899999999999999999995 889999999999864
No 9
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.30 E-value=6.7e-13 Score=97.81 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCceeeeeeeeeeCCCCCCCceEcCCCcEEEEEceeecChH---HHHHHhcCCCcccCChhhhhhcC
Q 046287 42 GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHK---QLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 42 ~~~~lg~~rl~~~~~~~~~QP~~~~~~~~~lv~NGeI~N~~---eL~~~l~g~~~~~~sD~evll~~ 105 (105)
+.+++||+||++.+ ..+.||+.+.+++++++ |+|||+. |||++|.| .|.+.||+|+|+++
T Consensus 26 ~~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l 88 (503)
T 1q15_A 26 KGEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALL 88 (503)
T ss_dssp EEEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHH
T ss_pred CceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHH
Confidence 45799999999975 47899999877788888 9999999 99999987 89999999999874
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=98.84 E-value=2.1e-09 Score=86.65 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhcCCC----CCCceEeC-----------------------------CceeeeeeeeeeCCC--CCCCc
Q 046287 18 RSRIIELSRRLRHRGPD----WSGLHCHG-----------------------------DCYLAHQRLAIVDPT--SGDQP 62 (105)
Q Consensus 18 ~~~~~~ml~~l~~RGpd----~~g~~~~~-----------------------------~~~lg~~rl~~~~~~--~~~QP 62 (105)
...+.-.+.+++||+++ +.+++..+ .++++|+|+||.+.. ...||
T Consensus 145 ~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQP 224 (1479)
T 1ea0_A 145 ELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQP 224 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSSC
T ss_pred HHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCCc
Confidence 34577788899999964 45665543 158999999998765 67899
Q ss_pred eEcCCCcEEEEEceeecChHHHHHHhc------------------C-CCcccCChhhhhh
Q 046287 63 LYNEDKTVVVTVNGEIYNHKQLREQLK------------------N-HQFRTGSDCEVIA 103 (105)
Q Consensus 63 ~~~~~~~~~lv~NGeI~N~~eL~~~l~------------------g-~~~~~~sD~evll 103 (105)
|.. |+|||||.|...+|+++. + .-+++.||||++.
T Consensus 225 f~~------laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld 278 (1479)
T 1ea0_A 225 FRM------LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLD 278 (1479)
T ss_dssp CSS------EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHH
T ss_pred cEE------EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHH
Confidence 943 899999999999998752 1 2378999999984
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=98.82 E-value=4.3e-09 Score=85.06 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEeCC-----------------------------ceeeeeeeeeeCCC--CCCCceEcC
Q 046287 18 RSRIIELSRRLRHRGPDWSGLHCHGD-----------------------------CYLAHQRLAIVDPT--SGDQPLYNE 66 (105)
Q Consensus 18 ~~~~~~ml~~l~~RGpd~~g~~~~~~-----------------------------~~lg~~rl~~~~~~--~~~QP~~~~ 66 (105)
...+.-.+.+++||++++.+++..+. ++++|+|+||.+.. ...|||..
T Consensus 145 ~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~~- 223 (1520)
T 1ofd_A 145 DRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRL- 223 (1520)
T ss_dssp HHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCSS-
T ss_pred HHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchhe-
Confidence 35677888999999987777766542 58999999998765 58899943
Q ss_pred CCcEEEEEceeecChHHHH------HH-----------hc--C-CCcccCChhhhhhc
Q 046287 67 DKTVVVTVNGEIYNHKQLR------EQ-----------LK--N-HQFRTGSDCEVIAH 104 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL~------~~-----------l~--g-~~~~~~sD~evll~ 104 (105)
|+|||||.|...+| ++ |+ + .-+++.||||+|.+
T Consensus 224 -----LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~ 276 (1520)
T 1ofd_A 224 -----LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDS 276 (1520)
T ss_dssp -----EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHH
T ss_pred -----eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHH
Confidence 89999999888998 32 22 2 34789999999853
No 12
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=76.64 E-value=3.4 Score=34.58 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=23.4
Q ss_pred eEEEEEecCCCCch-hHHHHHHHHHHHhhhcC
Q 046287 2 CGILAVFGCIDNSQ-AKRSRIIELSRRLRHRG 32 (105)
Q Consensus 2 cGI~g~~~~~~~~~-~~~~~~~~ml~~l~~RG 32 (105)
|||.++.+.+...+ ...+....+|..|.|||
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG 32 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRG 32 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGS
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccC
Confidence 99988887654332 24566778899999999
No 13
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=69.55 E-value=4.9 Score=33.59 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred eEEEEEecCCCCc-hhHHHHHHHHHHHhhhcCC
Q 046287 2 CGILAVFGCIDNS-QAKRSRIIELSRRLRHRGP 33 (105)
Q Consensus 2 cGI~g~~~~~~~~-~~~~~~~~~ml~~l~~RGp 33 (105)
|||.++.+.+... ....+...++|..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~ 33 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGA 33 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 9998888765433 2334567788899999996
No 14
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=57.49 E-value=6.6 Score=20.74 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=12.1
Q ss_pred CCcEEEEEceeecC
Q 046287 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~lv~NGeI~N 80 (105)
.+.+.|.|+|++|-
T Consensus 37 ~~~v~I~H~G~~Y~ 50 (63)
T 2loj_A 37 DGKVIIDHNGQEYL 50 (63)
T ss_dssp TCEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 56799999999985
No 15
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=51.99 E-value=8.1 Score=20.63 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=12.1
Q ss_pred CCcEEEEEceeecC
Q 046287 67 DKTVVVTVNGEIYN 80 (105)
Q Consensus 67 ~~~~~lv~NGeI~N 80 (105)
.+.+.|.|||++|-
T Consensus 41 ~~ev~I~H~G~~Y~ 54 (67)
T 2jra_A 41 DREIVIAHGDDRYR 54 (67)
T ss_dssp SSEEEEEETTEEEE
T ss_pred CCEEEEEeCCeEEE
Confidence 56799999999986
No 16
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=43.74 E-value=15 Score=22.15 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCcEEEEEceeecCh--HHHHHHhc----CCCcccCChhhh
Q 046287 67 DKTVVVTVNGEIYNH--KQLREQLK----NHQFRTGSDCEV 101 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~--~eL~~~l~----g~~~~~~sD~ev 101 (105)
+|.++++.|=.+.-. +++|++|. |..-.-.+|.|+
T Consensus 20 eG~Yl~~iNp~ld~~~~~~~R~~Lka~~~g~t~~~~tdtel 60 (139)
T 3noh_A 20 EGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTEL 60 (139)
T ss_dssp CSEEEEEECTTSGGGCCHHHHHHHHHHHTTSCSCCCCSSCC
T ss_pred ccceEEEeccccCccccHHHHHHHHHHhcCchhhcccccce
Confidence 578999999888877 88999886 433233445554
No 17
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=43.13 E-value=24 Score=16.09 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhcCCCCC
Q 046287 19 SRIIELSRRLRHRGPDWS 36 (105)
Q Consensus 19 ~~~~~ml~~l~~RGpd~~ 36 (105)
..++.-+++|..||.|+-
T Consensus 6 arveqelqaleargtdsn 23 (40)
T 1abz_A 6 ARVEQELQALEARGTDSN 23 (40)
T ss_dssp HHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 345666789999999874
No 18
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=33.08 E-value=28 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCceEcCCCcEEE-EEceeecChHHHHHHhc
Q 046287 60 DQPLYNEDKTVVV-TVNGEIYNHKQLREQLK 89 (105)
Q Consensus 60 ~QP~~~~~~~~~l-v~NGeI~N~~eL~~~l~ 89 (105)
..|+...++++++ ++.++|.|..+|.++|.
T Consensus 166 g~~~vTDnGN~IlD~~~~~i~dp~~l~~~L~ 196 (228)
T 4gmk_A 166 GSLLHTDSDNYIIDLHLGKIENPKELGDYLI 196 (228)
T ss_dssp SSBCCCTTSCEEEEECCSCCSCHHHHHHHHH
T ss_pred CCeEEecCCCEEEEecCCCCCCHHHHHHHHh
Confidence 3578666677655 77789999999999996
No 19
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=31.40 E-value=47 Score=21.80 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=25.9
Q ss_pred CCCceEcCCCcEEEEEceeecChHHHHHHhc
Q 046287 59 GDQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 59 ~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
...|++..++++++=..+.|.|..+|.++|.
T Consensus 166 ~~gp~vTDnGn~IlD~~~~i~~p~~l~~~l~ 196 (226)
T 2pjm_A 166 KRGPVITDNGNMIIDVFMNIDDAIELEKEIN 196 (226)
T ss_dssp SSSBCBCTTSCEEEEEECCCSCHHHHHHHHH
T ss_pred CCCcEEcCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 4579988888887766678999999999996
No 20
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=25.54 E-value=31 Score=18.89 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=13.9
Q ss_pred CcEEEEEceeecChHHH
Q 046287 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL 84 (105)
+..+++.+|.+|+-.+.
T Consensus 21 ~~~wv~i~g~VYDvT~f 37 (88)
T 2ibj_A 21 DKNWFIIHNNVYDVTAF 37 (88)
T ss_dssp TEEEEEETTEEEECGGG
T ss_pred CCEEEEECCEEEECCcc
Confidence 56889999999996654
No 21
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=24.84 E-value=32 Score=19.13 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.6
Q ss_pred CcEEEEEceeecChHHH
Q 046287 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL 84 (105)
+..+++.+|.+||-...
T Consensus 19 ~~~wv~i~g~VYDvT~f 35 (93)
T 1cyo_A 19 KSTWLILHYKVYDLTKF 35 (93)
T ss_dssp TEEEEEETTEEEECTTT
T ss_pred CCEEEEECCEEEECCCc
Confidence 46889999999986544
No 22
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=24.78 E-value=76 Score=20.87 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCceEcCCCcEEEEEceeecChHHHHHHhc
Q 046287 59 GDQPLYNEDKTVVVTVNGEIYNHKQLREQLK 89 (105)
Q Consensus 59 ~~QP~~~~~~~~~lv~NGeI~N~~eL~~~l~ 89 (105)
..+|+...++++++=.-..|.|..+|.++|.
T Consensus 166 ~~gp~vTDnGN~IlD~~~~i~dp~~l~~~L~ 196 (226)
T 3ixq_A 166 KRGPVITDNGNMIIDVFMNIDDAIELEKEIN 196 (226)
T ss_dssp SSSBCBCTTSCEEEEEECCCSCHHHHHHHHH
T ss_pred CCCceEecCCCEEEEecCCCCCHHHHHHHHh
Confidence 4579988788887766688999999999996
No 23
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=24.58 E-value=33 Score=18.50 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=14.3
Q ss_pred CcEEEEEceeecChHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLR 85 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~ 85 (105)
++.+++.+|.+|+-.+..
T Consensus 18 ~~~wv~i~g~VYDvT~f~ 35 (82)
T 1x3x_A 18 NDLWIIYDGEVHDMTSFY 35 (82)
T ss_dssp TEEEEEETTEEEECGGGG
T ss_pred CCEEEEECCEEEECCcch
Confidence 457899999999976654
No 24
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=24.40 E-value=29 Score=24.92 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.5
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-||+||++
T Consensus 174 D~KiVvyk~eVYNyD 188 (439)
T 3j0f_E 174 DHKVVIHRGLVYNYD 188 (439)
T ss_pred CceEEEecceeeccC
Confidence 456889999999965
No 25
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=23.77 E-value=29 Score=24.48 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.4
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-|++||++
T Consensus 174 D~KiVvyk~eVYNyD 188 (390)
T 1i9w_A 174 DNKIVVYKDEVFNQD 188 (390)
T ss_pred CceeEEEccceeccC
Confidence 456889999999965
No 26
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=23.57 E-value=35 Score=18.78 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=14.7
Q ss_pred CcEEEEEceeecChHHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~~ 86 (105)
+..+++.+|.+|+-.+...
T Consensus 22 ~~~wv~i~g~VYDvT~f~~ 40 (90)
T 1cxy_A 22 DDCWMAIHGKVYDLTPYVP 40 (90)
T ss_dssp TEEEEEETTEEEECTTTGG
T ss_pred CCEEEEECCEEEECccchh
Confidence 4688999999999665433
No 27
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=23.40 E-value=28 Score=19.90 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=13.8
Q ss_pred CcEEEEEceeecChHHH
Q 046287 68 KTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL 84 (105)
+..+++.+|.+||-...
T Consensus 23 ~~~wv~i~g~VYDvT~f 39 (104)
T 1hko_A 23 KSTWLILHYKVYDLTKF 39 (104)
T ss_dssp SSBEEEETTEEEEHHHH
T ss_pred CCEEEEECCEEEECCcc
Confidence 45788999999997654
No 28
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=23.28 E-value=36 Score=18.93 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=14.3
Q ss_pred CCcEEEEEceeecChHHH
Q 046287 67 DKTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 67 ~~~~~lv~NGeI~N~~eL 84 (105)
.+..+++.+|.+||-...
T Consensus 23 ~~~~wv~i~g~VYDvT~f 40 (92)
T 3ner_A 23 LKELWLVIHGRVYDVTRF 40 (92)
T ss_dssp TTEEEEEETTEEEECGGG
T ss_pred CCCEEEEECCEEEEcccc
Confidence 356888999999997654
No 29
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=23.20 E-value=36 Score=18.73 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=14.3
Q ss_pred CcEEEEEceeecChHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLR 85 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~ 85 (105)
+..+++.+|.+||-....
T Consensus 20 ~~~wv~i~g~VYDvT~f~ 37 (88)
T 3lf5_A 20 DDCWICIRGFVYNVSPYM 37 (88)
T ss_dssp TEEEEEETTEEEECGGGT
T ss_pred CCEEEEECCEEEECccch
Confidence 567889999999976543
No 30
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=23.19 E-value=30 Score=24.87 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=12.5
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-||+||++
T Consensus 174 D~KiVvyk~eVYNyD 188 (442)
T 3j0c_A 174 DRKIVQYAGEIYNYD 188 (442)
T ss_dssp CSEEEEETTEEECCC
T ss_pred CceeEEecceeeccC
Confidence 456889999999965
No 31
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=22.32 E-value=26 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.5
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-|++||++
T Consensus 176 D~KiVvyk~eVYNyD 190 (393)
T 3n40_F 176 DNKIVVYKGDVYNMD 190 (393)
T ss_dssp CSEEEEETTEEEECC
T ss_pred CceeEEecceeeccC
Confidence 456889999999965
No 32
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=21.31 E-value=1e+02 Score=16.67 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.9
Q ss_pred CCcEEEEEcee-ecChHHHHHHhc
Q 046287 67 DKTVVVTVNGE-IYNHKQLREQLK 89 (105)
Q Consensus 67 ~~~~~lv~NGe-I~N~~eL~~~l~ 89 (105)
.+..++..||+ +.++.+++..+.
T Consensus 22 ~GD~I~~ing~~v~~~~d~~~~l~ 45 (95)
T 3id1_A 22 PGTELKAVDGIETPDWDAVRLQLV 45 (95)
T ss_dssp TTCEEEEETTEECSSHHHHHHHHH
T ss_pred CCCEEEEECCEECCCHHHHHHHHH
Confidence 46788999996 888999998885
No 33
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=20.47 E-value=55 Score=18.99 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=16.0
Q ss_pred CcEEEEEceeecChHHHHHH
Q 046287 68 KTVVVTVNGEIYNHKQLREQ 87 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~eL~~~ 87 (105)
+..+++.+|.+|+-.....+
T Consensus 38 ~d~wvvi~G~VYDVT~fl~~ 57 (112)
T 2keo_A 38 GGFWTVIDGKVYDIKDFQTQ 57 (112)
T ss_dssp TCCEEEETTEEEEHHHHHHH
T ss_pred CCEEEEECCEEEECCcchhh
Confidence 45788999999998877654
No 34
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=20.22 E-value=31 Score=24.89 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.5
Q ss_pred CcEEEEEceeecChH
Q 046287 68 KTVVVTVNGEIYNHK 82 (105)
Q Consensus 68 ~~~~lv~NGeI~N~~ 82 (105)
++-++++-|++||++
T Consensus 196 D~KIVvyk~eVYNyD 210 (473)
T 3n44_F 196 DNKIVVYKGDVYNMD 210 (473)
T ss_dssp CSEEEEETTEEEECC
T ss_pred CceeEEecceeeccC
Confidence 456889999999965
Done!