BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046289
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 160/284 (56%), Gaps = 59/284 (20%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE--------------P 57
E ++ KEER AR W TT + PY+ + + G+WLIGGDL+VL+ P
Sbjct: 123 EFFEHRKEERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTP 181
Query: 58 IKMQA-----NVDAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILLH-------- 104
+++ N DAVFAFQ R PVHNGHA G + P++LLH
Sbjct: 182 TELKQKFKDMNADAVFAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKD 241
Query: 105 -----YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIV 159
WRMKQH VLE+GVL+PETTVV+IFPSPM YAGPTEVQWH +AR+ AGANFYIV
Sbjct: 242 DDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIV 301
Query: 160 GRDRAGM--------------------------GLESEYVKVAAYDKTQGKMAFFDPSRA 193
GRD AGM LE +VAAY+K + +M ++D
Sbjct: 302 GRDPAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHH 361
Query: 194 QEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPA 237
++F FISGT+MR LAR + PP+GFM P W VL EYY SL A
Sbjct: 362 EDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKA 405
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/284 (45%), Positives = 159/284 (55%), Gaps = 59/284 (20%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE--------------P 57
E ++ KEER AR W TT + PY+ + + G+WLIGGDL+VL+ P
Sbjct: 342 EFFEHRKEERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTP 400
Query: 58 IKMQA-----NVDAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILLH-------- 104
+++ N DAV AFQ R PVHNGHA G + P++LLH
Sbjct: 401 TELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKD 460
Query: 105 -----YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIV 159
WRMKQH VLE+GVL+PETTVV+IFPSPM YAGPTEVQWH +AR+ AGANFYIV
Sbjct: 461 DDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIV 520
Query: 160 GRDRAGM--------------------------GLESEYVKVAAYDKTQGKMAFFDPSRA 193
GRD AGM LE +VAAY+K + +M ++D
Sbjct: 521 GRDPAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKRMDYYDSEHH 580
Query: 194 QEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPA 237
++F FISGT+MR LAR + PP+GFM P W VL EYY SL A
Sbjct: 581 EDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKA 624
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 39/211 (18%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-------------PI 58
E+YK E TT P P V + T+ G + I G+L+V++ P
Sbjct: 94 EVYKWNLEYEAKNVLGTTDPRHPLVAEMHTW-GEYYISGELKVIQLPKYYDFPEYRKTPK 152
Query: 59 KMQANV-----DAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILLH-------YW 106
+++ + D + AFQ R P+H H +P++ L Y
Sbjct: 153 QVREEIKSLGLDKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVVGLTKPGDVDVYT 212
Query: 107 RMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGM 166
RM+ + KVL + D + T+++ P M AGP E WH R N GA +IVGRD A
Sbjct: 213 RMRIY-KVLYEKYYDKKKTILAFLPLAMRMAGPREALWHGIIRRNYGATHFIVGRDHASP 271
Query: 167 GLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197
G +S +GK F+DP AQE
Sbjct: 272 GKDS-----------KGK-PFYDPYEAQELF 290
>pdb|1JHD|A Chain A, Crystal Structure Of Bacterial Atp Sulfurylase From The
Riftia Pachyptila Symbiont
Length = 396
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 67 VFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILLHYWRMKQHD----------KVLE 116
V AFQ R P+H H G ++ + ++K+ D + +
Sbjct: 195 VVAFQTRNPMHRAHEELCRMAMESLDADGV---VVHMLLGKLKKGDIPAPVRDAAIRTMA 251
Query: 117 DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMG--------- 167
+ P T +V+ + M YAGP E HA R N GA +I+GRD AG+G
Sbjct: 252 EVYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQ 311
Query: 168 -----------LESEYVKV--AAYDKTQGKMAFFD--PSRAQE-FLFISGTKMRTLARNK 211
+E E + AY K K+ P +E F+ +SGTK+R +
Sbjct: 312 TIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQG 371
Query: 212 ENPPDGFMCPGGWKVLVEYYDSL 234
PP F P K+L++YY S+
Sbjct: 372 IAPPPEFSRPEVAKILMDYYQSI 394
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 38/203 (18%)
Query: 67 VFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILLHYWRMKQHD----------KVLE 116
+ AFQ R P+H H G +I + ++K D + +
Sbjct: 195 IVAFQTRNPMHRAHEELCKMAMEAVEADGV---VIHMLLGQLKPGDIPAPVRDAAIRTMA 251
Query: 117 DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMG--------- 167
+ P T +V+ + M YAGP E HA R N GA +I+GRD AG+G
Sbjct: 252 ELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGPFDAQ 311
Query: 168 -------------LESEYVKVAAYDKTQGKMAFFDPS---RAQEFLFISGTKMRTLARNK 211
+E AY K G++ + +F+ +SGT++R +
Sbjct: 312 TIFDDAVPTDVLAIEIFRADNTAYSKKLGRVVMMRDAPDHTPDDFIQLSGTRVREMLGQG 371
Query: 212 ENPPDGFMCPGGWKVLVEYYDSL 234
E PP F P ++L++YY SL
Sbjct: 372 EAPPPEFSRPEVAQILMDYYRSL 394
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 46/214 (21%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-------------PI 58
++YK K R +R P P + AG++ +GG LE ++ P
Sbjct: 119 DVYKPNKTIEAERVFRGD-PEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPA 177
Query: 59 KMQANV-----DAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------HYW 106
+++ D V AFQ R P+H H +P++ L H+
Sbjct: 178 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHT 237
Query: 107 RMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDR 163
R++ + ++++ +G+ +S+ P M +G E WHA R N GA+ +IVGRD
Sbjct: 238 RVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDH 292
Query: 164 AGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197
AG G S+ V F+ P AQE +
Sbjct: 293 AGPGKNSKGVD------------FYGPYDAQELV 314
>pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
Length = 510
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 46/214 (21%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-------------PI 58
++YK K + +R P P + AG++ +GG LE ++ P
Sbjct: 118 DVYKPNKTIEAEKVFRGD-PEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPA 176
Query: 59 KMQANV-----DAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------HYW 106
+++ D V AFQ R P+H H +P++ L H+
Sbjct: 177 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHT 236
Query: 107 RMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDR 163
R++ + ++++ +G+ +S+ P M +G E WHA R N GA+ +IVGRD
Sbjct: 237 RVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDH 291
Query: 164 AGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197
AG G S+ V F+ P AQE +
Sbjct: 292 AGPGKNSKGVD------------FYGPYDAQELV 313
>pdb|1J70|A Chain A, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|B Chain B, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|C Chain C, Crystal Structure Of Yeast Atp Sulfurylase
Length = 514
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 46/214 (21%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-------------PI 58
++YK K + +R P P + AG++ +GG LE ++ P
Sbjct: 122 DVYKPNKTIEAEKVFRGD-PEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPA 180
Query: 59 KMQANV-----DAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------HYW 106
+++ D V AFQ R P+H H +P++ L H+
Sbjct: 181 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHT 240
Query: 107 RMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDR 163
R++ + ++++ +G+ +S+ P M +G E WHA R N GA+ +IVGRD
Sbjct: 241 RVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDH 295
Query: 164 AGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197
AG G S+ V F+ P AQE +
Sbjct: 296 AGPGKNSKGVD------------FYGPYDAQELV 317
>pdb|1R6X|A Chain A, The Crystal Structure Of A Truncated Form Of Yeast Atp
Sulfurylase, Lacking The C-Terminal Aps Kinase-Like
Domain, In Complex With Sulfate
Length = 395
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 46/214 (21%)
Query: 12 EIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-------------PI 58
++YK K + +R P P + AG++ +GG LE ++ P
Sbjct: 118 DVYKPNKTIEAEKVFRGD-PEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPA 176
Query: 59 KMQANV-----DAVFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------HYW 106
+++ D V AFQ R P+H H +P++ L H+
Sbjct: 177 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHT 236
Query: 107 RMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDR 163
R++ + ++++ +G+ +S+ P M +G E WHA R N GA+ +IVGRD
Sbjct: 237 RVRVYQEIIKRYPNGI-----AFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDH 291
Query: 164 AGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197
AG G S+ V F+ P AQE +
Sbjct: 292 AGPGKNSKGVD------------FYGPYDAQELV 313
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 65/275 (23%)
Query: 12 EIYK--QPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE------------- 56
+IY+ + KE ++ P++ Y++ + + IGG +E +
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYVALRYT 177
Query: 57 PIKMQANVDA-----VFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------H 104
P +++ + D V AFQ R P+H H +P++ L H
Sbjct: 178 PAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGLTKPGDIDH 237
Query: 105 YWRMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGR 161
+ R++ + +L +G+ V+ + M GP E WHA R N GA +IVGR
Sbjct: 238 FTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGR 292
Query: 162 DRAGMGLES----------------EYVKVAAYDKTQGKMAFFDPSRAQ----------- 194
D AG G S +Y + + +M + P +
Sbjct: 293 DHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPAGV 352
Query: 195 EFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229
+ L ISGT++R R+ + P+ F P K+L E
Sbjct: 353 KTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 65/275 (23%)
Query: 12 EIYK--QPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE------------- 56
+IY+ + KE ++ P++ Y++ + + IGG +E +
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYVALRYT 177
Query: 57 PIKMQANVDA-----VFAFQRRKPVHNGHAXXXXXXXXXXXXXGCQNPIILL-------H 104
P +++ + D V AFQ R P+H H +P++ L H
Sbjct: 178 PAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGLTKPGDIDH 237
Query: 105 YWRMKQHDKVLE---DGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGR 161
+ R++ + +L +G+ V+ + M GP E WHA R N GA +IVGR
Sbjct: 238 FTRVRAYQALLPRYPNGM-----AVLGLLGLAMRMGGPREAIWHAIIRKNHGATHFIVGR 292
Query: 162 DRAGMGLES----------------EYVKVAAYDKTQGKMAFFDPSRAQ----------- 194
D AG G S +Y + + +M + P +
Sbjct: 293 DHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPAGV 352
Query: 195 EFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229
+ L ISGT++R R+ + P+ F P K+L E
Sbjct: 353 KTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387
>pdb|1V47|A Chain A, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
pdb|1V47|B Chain B, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
Length = 349
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMG-----------------LESEYVK 174
+PM YAGP E +HA R N GA ++VGRD AG+G L E VK
Sbjct: 228 TPMRYAGPKEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVK 287
Query: 175 VAA--YDKTQGKMA---FFDPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVL 227
V A + G +A ++ IS TK+R L R + PP + P +L
Sbjct: 288 VGAVFHCPLCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPIL 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,519,290
Number of Sequences: 62578
Number of extensions: 294949
Number of successful extensions: 541
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 21
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)