Query 046289
Match_columns 243
No_of_seqs 126 out of 538
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2046 MET3 ATP sulfurylase ( 100.0 2.4E-88 5.1E-93 625.7 20.1 225 3-236 105-382 (397)
2 PRK04149 sat sulfate adenylylt 100.0 5.9E-86 1.3E-90 621.8 26.7 225 3-236 108-386 (391)
3 cd00517 ATPS ATP-sulfurylase. 100.0 8.7E-84 1.9E-88 600.7 25.9 220 3-230 78-353 (353)
4 PRK05537 bifunctional sulfate 100.0 4.9E-80 1.1E-84 605.7 26.2 227 3-238 107-392 (568)
5 TIGR00339 sopT ATP sulphurylas 100.0 1.1E-75 2.3E-80 551.5 24.5 220 3-229 105-383 (383)
6 PF01747 ATP-sulfurylase: ATP- 100.0 1E-70 2.2E-75 482.6 17.5 163 62-231 18-215 (215)
7 KOG4238 Bifunctional ATP sulfu 100.0 1E-55 2.2E-60 410.0 18.1 233 4-237 337-627 (627)
8 KOG0636 ATP sulfurylase (sulfa 100.0 5.4E-38 1.2E-42 290.1 -2.0 226 4-238 79-363 (466)
9 KOG0636 ATP sulfurylase (sulfa 100.0 3E-31 6.4E-36 245.5 -5.6 237 3-243 159-458 (466)
10 PF14306 PUA_2: PUA-like domai 99.6 3E-16 6.5E-21 132.5 5.9 54 3-57 107-160 (160)
11 cd02039 cytidylyltransferase_l 98.4 1.4E-06 3.1E-11 69.2 8.5 90 68-165 3-104 (143)
12 cd02168 NMNAT_Nudix Nicotinami 98.2 5.8E-05 1.3E-09 64.9 13.5 137 72-230 7-165 (181)
13 PRK05379 bifunctional nicotina 98.1 4E-05 8.8E-10 71.7 12.4 135 72-230 14-171 (340)
14 cd02169 Citrate_lyase_ligase C 98.1 4.4E-05 9.5E-10 70.5 11.6 139 61-212 110-281 (297)
15 cd02166 NMNAT_Archaea Nicotina 97.9 0.00027 5.9E-09 59.6 12.8 134 72-230 7-156 (163)
16 smart00764 Citrate_ly_lig Citr 97.7 0.00052 1.1E-08 59.2 11.1 130 70-212 5-166 (182)
17 cd02165 NMNAT Nicotinamide/nic 97.6 0.00079 1.7E-08 57.6 11.0 147 71-230 6-189 (192)
18 TIGR01527 arch_NMN_Atrans nico 97.6 0.00095 2.1E-08 56.8 11.2 131 72-230 7-154 (165)
19 cd02064 FAD_synthetase_N FAD s 97.6 0.0006 1.3E-08 58.0 10.0 132 66-212 1-159 (180)
20 PRK13793 nicotinamide-nucleoti 97.5 0.002 4.2E-08 56.5 12.7 135 74-230 14-166 (196)
21 PRK01153 nicotinamide-nucleoti 97.5 0.0014 3E-08 56.1 11.4 132 72-230 8-157 (174)
22 cd02163 PPAT Phosphopantethein 97.3 0.0012 2.6E-08 54.9 7.9 132 71-229 6-153 (153)
23 TIGR01510 coaD_prev_kdtB pante 97.3 0.0015 3.3E-08 54.4 8.4 132 71-229 6-153 (155)
24 TIGR00482 nicotinate (nicotina 97.2 0.0098 2.1E-07 51.1 13.0 145 72-230 5-190 (193)
25 TIGR00083 ribF riboflavin kina 97.2 0.0034 7.5E-08 57.8 10.6 131 68-213 2-158 (288)
26 PRK08887 nicotinic acid mononu 97.2 0.0017 3.6E-08 55.4 7.6 138 71-230 9-167 (174)
27 PRK00168 coaD phosphopantethei 97.2 0.0049 1.1E-07 51.6 10.3 142 68-232 5-158 (159)
28 PRK00071 nadD nicotinic acid m 96.9 0.022 4.7E-07 49.3 12.6 147 71-230 11-198 (203)
29 PRK05627 bifunctional riboflav 96.9 0.0069 1.5E-07 56.2 10.0 132 66-212 15-174 (305)
30 PRK06973 nicotinic acid mononu 96.9 0.022 4.8E-07 51.3 12.7 154 71-230 29-238 (243)
31 COG0196 RibF FAD synthase [Coe 96.5 0.018 4E-07 53.6 9.7 137 65-213 16-175 (304)
32 PLN02945 nicotinamide-nucleoti 96.5 0.1 2.2E-06 46.5 14.0 155 66-229 22-231 (236)
33 cd02167 NMNAT_NadR Nicotinamid 96.3 0.07 1.5E-06 44.8 11.1 119 72-208 7-146 (158)
34 cd02171 G3P_Cytidylyltransfera 96.2 0.02 4.2E-07 45.8 7.1 111 65-210 2-128 (129)
35 PRK07152 nadD putative nicotin 96.0 0.12 2.7E-06 48.3 12.5 143 71-230 8-181 (342)
36 PRK07143 hypothetical protein; 95.6 0.11 2.4E-06 47.8 9.9 126 65-212 16-163 (279)
37 COG1057 NadD Nicotinic acid mo 95.5 0.12 2.7E-06 45.2 9.7 148 71-229 10-191 (197)
38 PRK13670 hypothetical protein; 93.7 0.4 8.6E-06 46.1 9.0 87 66-165 2-106 (388)
39 cd02170 cytidylyltransferase c 93.4 0.36 7.8E-06 38.8 7.1 113 66-209 3-134 (136)
40 PF06574 FAD_syn: FAD syntheta 93.1 0.24 5.2E-06 41.6 5.7 91 65-164 6-117 (157)
41 PRK08099 bifunctional DNA-bind 91.9 2 4.3E-05 41.4 11.0 129 64-208 52-203 (399)
42 COG0669 CoaD Phosphopantethein 91.4 3.8 8.3E-05 34.9 10.9 136 71-230 9-157 (159)
43 PF08218 Citrate_ly_lig: Citra 91.2 1.1 2.5E-05 38.9 7.7 133 70-212 5-166 (182)
44 TIGR00124 cit_ly_ligase [citra 91.2 2.7 5.9E-05 39.5 10.9 158 65-231 139-330 (332)
45 TIGR02199 rfaE_dom_II rfaE bif 90.6 1.9 4.2E-05 35.4 8.4 113 65-209 12-143 (144)
46 TIGR01518 g3p_cytidyltrns glyc 90.4 0.57 1.2E-05 37.3 4.9 46 150-207 79-124 (125)
47 PRK13964 coaD phosphopantethei 89.2 1.2 2.5E-05 37.1 6.0 120 71-212 8-140 (140)
48 COG1323 Predicted nucleotidylt 88.6 2.2 4.8E-05 40.8 8.2 35 196-230 202-237 (358)
49 cd02164 PPAT_CoAS phosphopante 84.2 4.5 9.7E-05 33.5 6.9 22 70-91 5-26 (143)
50 COG1056 NadR Nicotinamide mono 83.5 3.1 6.6E-05 35.9 5.8 32 198-229 128-159 (172)
51 TIGR00125 cyt_tran_rel cytidyl 79.9 2 4.2E-05 29.8 2.8 20 68-87 3-22 (66)
52 cd02174 CCT CTP:phosphocholine 79.5 19 0.00041 30.0 9.1 117 66-211 4-138 (150)
53 PRK00777 phosphopantetheine ad 78.6 8.1 0.00017 32.3 6.6 77 66-162 3-97 (153)
54 PF01467 CTP_transf_2: Cytidyl 78.1 1.3 2.7E-05 34.9 1.5 40 72-116 5-60 (157)
55 PLN02388 phosphopantetheine ad 73.8 13 0.00028 32.1 6.7 127 63-210 18-166 (177)
56 PF06239 ECSIT: Evolutionarily 69.7 6.8 0.00015 35.3 4.2 50 67-126 54-103 (228)
57 cd09286 NMNAT_Eukarya Nicotina 68.7 5.7 0.00012 35.2 3.5 32 198-230 191-222 (225)
58 PF12450 vWF_A: von Willebrand 60.5 14 0.00031 29.1 3.9 34 198-234 37-70 (99)
59 cd02156 nt_trans nucleotidyl t 58.5 6.9 0.00015 29.9 1.9 14 74-87 9-22 (105)
60 PF05636 HIGH_NTase1: HIGH Nuc 58.4 5.8 0.00013 38.2 1.7 85 67-169 3-110 (388)
61 PRK13671 hypothetical protein; 57.5 9 0.00019 35.7 2.7 31 198-229 195-225 (298)
62 COG3053 CitC Citrate lyase syn 53.5 1.6E+02 0.0034 28.0 10.1 139 62-212 142-317 (352)
63 cd09286 NMNAT_Eukarya Nicotina 49.7 14 0.00029 32.8 2.5 64 71-141 7-86 (225)
64 PRK03681 hypA hydrogenase nick 43.7 8.6 0.00019 30.6 0.3 34 172-205 66-107 (114)
65 TIGR01526 nadR_NMN_Atrans nico 40.5 21 0.00045 33.3 2.3 46 70-116 7-62 (325)
66 TIGR00100 hypA hydrogenase nic 38.5 12 0.00025 29.9 0.3 34 172-205 66-106 (115)
67 PTZ00308 ethanolamine-phosphat 37.1 1.3E+02 0.0028 28.7 7.1 79 63-164 10-106 (353)
68 PRK12380 hydrogenase nickel in 35.9 14 0.0003 29.4 0.3 34 172-205 66-106 (113)
69 cd05022 S-100A13 S-100A13: S-1 35.9 48 0.001 25.2 3.3 39 198-242 25-64 (89)
70 cd02172 RfaE_N N-terminal doma 35.3 38 0.00083 27.7 2.9 25 65-89 5-29 (144)
71 COG1099 Predicted metal-depend 35.2 1.9E+02 0.0041 26.5 7.4 75 78-162 137-211 (254)
72 PF14237 DUF4339: Domain of un 33.7 38 0.00082 22.2 2.2 29 195-223 10-38 (45)
73 cd05027 S-100B S-100B: S-100B 33.7 59 0.0013 24.4 3.5 37 198-242 26-68 (88)
74 COG1019 Predicted nucleotidylt 33.6 1.1E+02 0.0024 26.1 5.4 21 71-95 12-32 (158)
75 cd05024 S-100A10 S-100A10: A s 32.1 35 0.00076 26.4 2.0 43 198-242 23-65 (91)
76 PF13499 EF-hand_7: EF-hand do 26.2 64 0.0014 21.9 2.4 42 198-242 16-57 (66)
77 PF01155 HypA: Hydrogenase exp 26.0 22 0.00047 28.2 -0.1 33 172-204 66-105 (113)
78 cd05029 S-100A6 S-100A6: S-100 25.8 92 0.002 23.4 3.4 37 198-242 28-68 (88)
79 COG5216 Uncharacterized conser 25.6 77 0.0017 23.0 2.7 37 172-214 8-44 (67)
80 KOG2668 Flotillins [Intracellu 25.0 17 0.00037 35.0 -1.0 24 4-28 109-132 (428)
81 cd05026 S-100Z S-100Z: S-100Z 24.4 75 0.0016 23.9 2.6 41 198-242 28-70 (93)
82 PF11756 YgbA_NO: Nitrous oxid 24.0 37 0.0008 27.3 0.9 17 133-149 77-93 (112)
83 PRK00564 hypA hydrogenase nick 23.8 18 0.00039 29.0 -1.0 33 172-204 67-107 (117)
84 cd05025 S-100A1 S-100A1: S-100 23.6 98 0.0021 22.9 3.1 41 198-242 27-69 (92)
85 PF04492 Phage_rep_O: Bacterio 22.4 52 0.0011 25.7 1.4 14 142-155 36-49 (100)
86 COG1355 Predicted dioxygenase 22.3 3.3E+02 0.0071 25.4 6.8 38 131-169 53-91 (279)
No 1
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-88 Score=625.71 Aligned_cols=225 Identities=29% Similarity=0.430 Sum_probs=210.7
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEeccccc-c-----------------CCC
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIKM-Q-----------------ANV 64 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~-~-----------------~gw 64 (243)
.++|+|+|+|+|++||+.+|++||+|+|++||||+.++ .+|+++|||+|++++.+.+ + +||
T Consensus 105 ~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~i~l~~~p~~~~~~~~~~~P~~~R~~f~~kgw 183 (397)
T COG2046 105 DPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGKIELINEPIFKPFPKYWLTPAETREVFKEKGW 183 (397)
T ss_pred ceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeeeEEEEecCCCCCchhhccCHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999976 6999999999999995432 1 899
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
++|||||||||+|||||+|||+| ++.. ++|||| ++||++||+|++ +|||+++++|+++|
T Consensus 184 k~vvafQTRNp~HraHEyl~K~A----l~~v---dgllv~plVG~tk~gD~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~ 255 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRA----LEKV---DGLLVHPLVGATKPGDIPDEVRMEYYEALLK-HYYPPDRVFLSVLP 255 (397)
T ss_pred eEEEEEecCCCchHHHHHHHHHH----HHhc---CcEEEEeeeccccCCCchHHHHHHHHHHHHH-hCCCCCcEEEEecH
Confidence 99999999999999999999976 3442 667777 999999999998 89999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCccc--------------------ccceeEEeCCCCeEeee--C
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESE--------------------YVKVAAYDKTQGKMAFF--D 189 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~--------------------~~~~~~Y~~~~~~~~~~--~ 189 (243)
++|||||||||+||||||||||||||||||||||||+||+ +|++++||++|++|+++ |
T Consensus 256 ~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~c 335 (397)
T COG2046 256 AAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTC 335 (397)
T ss_pred HHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCcccccC
Confidence 9999999999999999999999999999999999999987 78999999999999996 9
Q ss_pred CCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCC
Q 046289 190 PSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAP 236 (243)
Q Consensus 190 ~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~ 236 (243)
||+.++++.||||++|+||++|+.||+|||||||++||+++++....
T Consensus 336 ph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~~~~~~~ 382 (397)
T COG2046 336 PHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKSLFPYRL 382 (397)
T ss_pred CCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999987643
No 2
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=5.9e-86 Score=621.83 Aligned_cols=225 Identities=30% Similarity=0.428 Sum_probs=210.7
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEeccc-ccc-----------------CCC
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPI-KMQ-----------------ANV 64 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~-~~~-----------------~gw 64 (243)
+++|+|+|+|+|++||+++|++||||+|++||||++++ ++|+|+|||+|++++++ +.+ +||
T Consensus 108 ~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~i~~l~~~~~~~f~~~r~tP~e~r~~f~~~gw 186 (391)
T PRK04149 108 EPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGPVTLLNRKFHEPFPRFWLTPAETRELFEEKGW 186 (391)
T ss_pred EEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeEEEEeecCCCCCchhhcCCHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999976 57999999999999964 321 899
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
++|+|||||||+|||||+|++.| +|.. ++|||| ++|+|||+++++ ||||+++++|++||
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a----~e~~---d~lll~plvG~~k~~di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp 258 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCA----LEIV---DGLLLNPLVGETKSGDIPAEVRMEAYEALLK-NYYPKDRVLLSVTP 258 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHH----HHhc---CeEEEecCcCCCCCCCCCHHHHHHHHHHHHH-hcCCCCcEEEEecc
Confidence 99999999999999999999865 4442 788886 999999999999 79999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCccc---------------------ccceeEEeCCCCeEee--e
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESE---------------------YVKVAAYDKTQGKMAF--F 188 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~---------------------~~~~~~Y~~~~~~~~~--~ 188 (243)
++||||||||||||||||||||||||||||||||||+||+ +|++++||++|++|+| +
T Consensus 259 ~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g~~Y~~~~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~ 338 (391)
T PRK04149 259 AAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFTEEELGITPLKFEEAFYCPKCGGMASEKT 338 (391)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCccccCCCchHHHHHHhCCcccCCceEEecceeEEecCCCeEEEccc
Confidence 9999999999999999999999999999999999999987 7889999999999999 5
Q ss_pred CCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCC
Q 046289 189 DPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAP 236 (243)
Q Consensus 189 ~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~ 236 (243)
|||+.+++++||||+||+||++|+.||+|||||||+++|+++|+++..
T Consensus 339 cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~~~~~~~ 386 (391)
T PRK04149 339 CPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKGLKKYGY 386 (391)
T ss_pred CCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999999999999999999999998643
No 3
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=8.7e-84 Score=600.67 Aligned_cols=220 Identities=43% Similarity=0.635 Sum_probs=203.6
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEeccccc-c-----------------CCC
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIKM-Q-----------------ANV 64 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~-~-----------------~gw 64 (243)
+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.+ + +||
T Consensus 78 ~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~~f~~~r~tP~e~R~~f~~~gw 156 (353)
T cd00517 78 QPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFPDFDQYRLTPAELRALFKERGW 156 (353)
T ss_pred EEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcCCchhhcCCHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999976 5799999999999995432 1 899
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
++|+|||||||+|||||+|||+|++.+ + +++|||| ++|+|||+++++ +|+|+++++|++||
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~---~--~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~~lp 230 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKL---L--NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLAILP 230 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHc---C--CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEEecc
Confidence 999999999999999999999775432 1 3778887 999999999999 89999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCC---Cccc--------------------ccceeEEeCCCCeEeee
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMG---LESE--------------------YVKVAAYDKTQGKMAFF 188 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g---~~~~--------------------~~~~~~Y~~~~~~~~~~ 188 (243)
++||||||||||||||||||||||||||||||||+| +||+ +|++++||++|++|+|.
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~ 310 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHPGDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKCDGMASE 310 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCccccCCcchhHHHHHhCcccCCceEEecceeEEecCCCeEEec
Confidence 999999999999999999999999999999999999 9986 78999999999999996
Q ss_pred --CCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 189 --DPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 189 --~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
||| ++++++||||+||+||++|+.||+|||||||+++|+++
T Consensus 311 ~~cp~-~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~~ 353 (353)
T cd00517 311 DTCPH-GEDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLREY 353 (353)
T ss_pred ccCCC-CCceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhhC
Confidence 995 45699999999999999999999999999999999875
No 4
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=4.9e-80 Score=605.70 Aligned_cols=227 Identities=30% Similarity=0.446 Sum_probs=209.7
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEecccc-cc-----------------CCC
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIK-MQ-----------------ANV 64 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~-~~-----------------~gw 64 (243)
+++|+|+|+|+|++||++||++||||+|++||||++++.+.|+|+|||+|++++++. ++ +||
T Consensus 107 ~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v~~~~~~~~~~f~~~r~tp~e~r~~f~~~gw 186 (568)
T PRK05537 107 VLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPLTGIQLPVHYDFVQLRLTPAELRARFRKLGW 186 (568)
T ss_pred cEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeEEEEecCCCCCchhhcCCHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999999886559999999999998543 21 799
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
++|+|||||||+|||||+|||+|++.+ +++|||| ++|||||+++++ + ||+++++|++||
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~------d~~lll~p~~G~~k~~d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p 258 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREV------GANLLIHPVVGMTKPGDIDHFTRVRCYEALLD-K-YPPATTLLSLLP 258 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhc------CCeEEEecCCCCCCCCCCCHHHHHHHHHHHHH-h-CCCCcEEEEecc
Confidence 999999999999999999999875432 2467777 999999999999 6 999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCC------CCccc--------------------ccceeEEeCCCCeE
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGM------GLESE--------------------YVKVAAYDKTQGKM 185 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~------g~~~~--------------------~~~~~~Y~~~~~~~ 185 (243)
++|||||||||+||||||||||||||||||||||| |+||+ +|++++||++|++|
T Consensus 259 ~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~~~~~~~~Y~~~~~~~ 338 (568)
T PRK05537 259 LAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYADEIGITMVPFKEMVYVQDKAQY 338 (568)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchHHHHHHHhCccccCceEEecceeEEEcCCCeE
Confidence 99999999999999999999999999999999999 66887 78999999999999
Q ss_pred eee--CCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCCCC
Q 046289 186 AFF--DPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPAD 238 (243)
Q Consensus 186 ~~~--~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~~~ 238 (243)
+|. |||+. ++++||||+||+||++|+.||+|||||||++||+++|++..+++
T Consensus 339 ~~~~~cph~~-~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g 392 (568)
T PRK05537 339 VPVDEVPQGA-TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQG 392 (568)
T ss_pred EecCcCCCCc-ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCC
Confidence 996 99977 59999999999999999999999999999999999999887665
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=1.1e-75 Score=551.47 Aligned_cols=220 Identities=36% Similarity=0.496 Sum_probs=203.8
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEecccc-cc-----------------CCC
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIK-MQ-----------------ANV 64 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~-~~-----------------~gw 64 (243)
+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++++++. .+ +||
T Consensus 105 ~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~l~~~~~~~f~~~r~tP~e~r~~f~~~gw 183 (383)
T TIGR00339 105 QPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEVINLPKFYDFPRFRFTPAELREEFKERGW 183 (383)
T ss_pred CEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEEeecCCCCCchhhcCCHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999987 799999999999999653 21 899
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
++|+|||||||+||||++|++.|+..+ . .|.|||+ ++|++||+++++ ||+|+++++++++|
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l---~--~d~lll~P~~g~~k~~~~~~~~R~~~~~~~~~-~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSL---P--NAGVLVHPLVGLTKPGDIPAEVRMRAYEVLKE-GYPNPERVMLTFLP 257 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCCCceEEEecc
Confidence 999999999999999999998764331 1 3666655 999999999998 89999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCC------Cccc--------------------ccceeEEeCCCCeE
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMG------LESE--------------------YVKVAAYDKTQGKM 185 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g------~~~~--------------------~~~~~~Y~~~~~~~ 185 (243)
++||||||||+|||||+|||||||||||||||||+| +||+ +|++++||++|++|
T Consensus 258 ~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c~~~ 337 (383)
T TIGR00339 258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYCPDEDEY 337 (383)
T ss_pred hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEEcccCcE
Confidence 999999999999999999999999999999999999 8886 78999999999999
Q ss_pred eee--CCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHH
Q 046289 186 AFF--DPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229 (243)
Q Consensus 186 ~~~--~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~ 229 (243)
+|. |||+++++++||||+||+||++|+.||+|||||||++||++
T Consensus 338 ~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 383 (383)
T TIGR00339 338 APADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILRE 383 (383)
T ss_pred eecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhC
Confidence 996 99998999999999999999999999999999999999974
No 6
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=1e-70 Score=482.62 Aligned_cols=163 Identities=34% Similarity=0.524 Sum_probs=134.1
Q ss_pred CCCccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEe
Q 046289 62 ANVDAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVS 128 (243)
Q Consensus 62 ~gw~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~ 128 (243)
+||++|+|||||||+|||||+|++.|++.+ .++|||| ++|++||+++++ +|||+++++|+
T Consensus 18 ~gw~~VvafqtrnPlHraHe~l~~~a~e~~------~~~lll~plvG~~k~~d~~~~~r~~~~~~~~~-~y~p~~~v~l~ 90 (215)
T PF01747_consen 18 KGWRRVVAFQTRNPLHRAHEYLMRRALEKA------GDGLLLHPLVGPTKPGDIPYEVRVRCYEALID-NYFPKNRVLLS 90 (215)
T ss_dssp TT-SSEEEEEESS---HHHHHHHHHHHHHH------TSEEEEEEBESB-STTSCCHHHHHHHHHHHHH-HCSSTTGEEEE
T ss_pred cCCCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCcEEEEeccCCCCcCCCCHHHHHHHHHHHHH-HhCCCCcEEEe
Confidence 899999999999999999999999775543 2678777 999999999999 69999999999
Q ss_pred eCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCccc--------------------ccceeEEeCCCCeEeee
Q 046289 129 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESE--------------------YVKVAAYDKTQGKMAFF 188 (243)
Q Consensus 129 ~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~--------------------~~~~~~Y~~~~~~~~~~ 188 (243)
+||++||||||||||||||||||||||||||||||||+|+||+ +|++++||++|++|+|.
T Consensus 91 ~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g~~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~~~~ 170 (215)
T PF01747_consen 91 PLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDFYDPYEAQEIFDEYAGELGIEPVPFPEMVYCPKCGQYVSA 170 (215)
T ss_dssp BBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SCBSS-TTHHHHHHHHHHHHCTSEEEE---EEEETTTTEEEEC
T ss_pred ccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCccccCCccHHHHHHHcCcccCCceEEecceEEEEcCCCeEeec
Confidence 9999999999999999999999999999999999999999997 78999999999999995
Q ss_pred --CCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHH
Q 046289 189 --DPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYY 231 (243)
Q Consensus 189 --~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~ 231 (243)
|||+.+++++||||+||+||++|+.||+|||||||+++|+++|
T Consensus 171 ~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~~Y 215 (215)
T PF01747_consen 171 KTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRRYY 215 (215)
T ss_dssp GGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHHHC
T ss_pred cccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhC
Confidence 9999988899999999999999999999999999999999998
No 7
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-55 Score=410.01 Aligned_cols=233 Identities=60% Similarity=1.043 Sum_probs=222.9
Q ss_pred eEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEecccccc-------------------CCC
Q 046289 4 LFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIKMQ-------------------ANV 64 (243)
Q Consensus 4 ~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~-------------------~gw 64 (243)
.+|||...|+|+++|+++|.+.|||++++||.|++.+ .+|+|+|||++.+++.+.|+ +++
T Consensus 337 ~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~vm-esg~wl~ggdl~vl~ki~~ndgldqyr~tp~elk~~f~e~na 415 (627)
T KOG4238|consen 337 RVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMVM-ESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQKFKEMNA 415 (627)
T ss_pred EEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHHH-hcCCeeeccchhhheeeeeccchhhhcCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999999999999865 69999999999999987753 789
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFP 131 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp 131 (243)
+.|+|||.|||+|+||..||++|.+.+++.|+++|+|||| .+||+++.++++++.+.|+.+++++||
T Consensus 416 davfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddvpl~~rmkqh~avl~e~vldpe~tvvaifp 495 (627)
T KOG4238|consen 416 DAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPESTVVAIFP 495 (627)
T ss_pred ceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCccchhhhHHHHHHHHhccCCccceEEEEcC
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCc------cc--------------------ccceeEEeCCCCeE
Q 046289 132 SPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLE------SE--------------------YVKVAAYDKTQGKM 185 (243)
Q Consensus 132 ~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~------~~--------------------~~~~~~Y~~~~~~~ 185 (243)
++|.||||.|..|||..|...|++|+|||||.||+... |+ ||+..+|+++.+.|
T Consensus 496 spmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thgakvlsmapgl~~l~i~pfrvaay~k~~k~m 575 (627)
T KOG4238|consen 496 SPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGAKVLSMAPGLTSLEIIPFRVAAYNKAKKAM 575 (627)
T ss_pred CchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCceeeeecCCcceeeeeeeehhhhhhhhhhc
Confidence 99999999999999999999999999999999999875 22 89999999999999
Q ss_pred eeeCCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCCC
Q 046289 186 AFFDPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPA 237 (243)
Q Consensus 186 ~~~~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~~ 237 (243)
.+.++..++++.+||||+||++.|+|+.||+.||.|..|+||.+||++++++
T Consensus 576 ~f~d~~~~edfe~isgtrmr~lar~g~~ppegfmap~aw~vlt~yyksle~~ 627 (627)
T KOG4238|consen 576 DFYDPARHEDFEFISGTRMRKLAREGENPPEGFMAPKAWKVLTDYYKSLEKN 627 (627)
T ss_pred cccChhhhcccccccchhHHHHHhcCCCCCccccCchHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999764
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-38 Score=290.07 Aligned_cols=226 Identities=22% Similarity=0.231 Sum_probs=196.5
Q ss_pred eEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEec-ccccc-----------------CCCc
Q 046289 4 LFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLE-PIKMQ-----------------ANVD 65 (243)
Q Consensus 4 ~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~-~~~~~-----------------~gw~ 65 (243)
++++.+|...|.+.+.++++.+|+. ++.||..-++++=.+.++++|+++-.+ |++++ ..|+
T Consensus 79 ~i~l~~vdl~w~hv~segwasplrG-fmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~d 157 (466)
T KOG0636|consen 79 RIKLNTVDLEWVHVLSEGWASPLRG-FMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQSD 157 (466)
T ss_pred ceeeeeeeeEEeeecchhhhccccC-cccchhHHhheeccceeecCceEEEeeccEEEecCcccccccccceeEEEecCC
Confidence 6899999999999999999999985 678999998887789999999999988 66532 6899
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCCC
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFPS 132 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~ 132 (243)
.+++||+|||+||+|.+++.++ |.+.| +-+++| .+|++.|+.... .||.+...++++|+
T Consensus 158 ~~~i~~lrn~~~~aH~e~t~R~---Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~ 229 (466)
T KOG0636|consen 158 GNPIAILRNPMHRAHRELTVRA---ARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPL 229 (466)
T ss_pred CCeeeeecCHHhhhchHHHHHH---HHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChH
Confidence 9999999999999999995544 45554 445554 889999988777 79999999999999
Q ss_pred CcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCc------cc--------------------ccceeEEeCCCCeEe
Q 046289 133 PMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLE------SE--------------------YVKVAAYDKTQGKMA 186 (243)
Q Consensus 133 ~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~------~~--------------------~~~~~~Y~~~~~~~~ 186 (243)
+||++|+|||+||||+|||||++|||+||||||+|.. |+ +|..+.|...++.|.
T Consensus 230 amR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~EDv~d 309 (466)
T KOG0636|consen 230 AMRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDEDVYD 309 (466)
T ss_pred HHhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhhhcC
Confidence 9999999999999999999999999999999999863 32 677788888888777
Q ss_pred eeCCC--CCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCCCC
Q 046289 187 FFDPS--RAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPAD 238 (243)
Q Consensus 187 ~~~~h--~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~~~ 238 (243)
|.+.+ -...+.+||||++|++++.|-.||+||++|||.++++..+.+..+.|
T Consensus 310 P~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~ 363 (466)
T KOG0636|consen 310 PEDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQG 363 (466)
T ss_pred ccceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCC
Confidence 76544 25578899999999999999999999999999999999988876655
No 9
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3e-31 Score=245.48 Aligned_cols=237 Identities=37% Similarity=0.452 Sum_probs=216.5
Q ss_pred ceEEEEEeccccCCCHH-HHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEecccccc-------------------C
Q 046289 3 LLFDVYFSIEIYKQPKE-ERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEPIKMQ-------------------A 62 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~-~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~-------------------~ 62 (243)
.++|++...++|++.++ ++|.+.+||+-+-||.|.......++|+++|+++++.+++|+ +
T Consensus 159 ~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~r~ 238 (466)
T KOG0636|consen 159 NPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDIDHLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGDRE 238 (466)
T ss_pred CeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCcceeeeEEEEEEeeecCCchhhhcCChHHHhhhcchh
Confidence 47999999999999999 999999999999999999877778999999999999998874 5
Q ss_pred CCccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEee
Q 046289 63 NVDAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSI 129 (243)
Q Consensus 63 gw~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~ 129 (243)
+...+++||.+||.|.+|-.++..+.+..++.+|.||.+++| ..|++++....++ .|.|.+++.++
T Consensus 239 ~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~si 317 (466)
T KOG0636|consen 239 AAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVVSI 317 (466)
T ss_pred hhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhh-hcCccceeeec
Confidence 667899999999999999999988888888899999998877 6788888888875 88888899999
Q ss_pred CCCCcCCCC-chHHHHHHHHHHhcCCcEeEecCCCCCCCCc------cc----------------------ccceeEEeC
Q 046289 130 FPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDRAGMGLE------SE----------------------YVKVAAYDK 180 (243)
Q Consensus 130 lp~~mryAG-PrEal~hAiirkN~GcTHfIvGrdHAG~g~~------~~----------------------~~~~~~Y~~ 180 (243)
+|.+|.|+| |.|..||+-.|-|-|++..|||||.+|.|.. |+ +|+.++|++
T Consensus 318 ~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~kq~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~~~ 397 (466)
T KOG0636|consen 318 FTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTEKQGFYDADHGATKKVLSMAPLLERLNILGFRVAAYDK 397 (466)
T ss_pred cccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcccCCceecCCccchheeccchhhHHhccCCeeEEEEec
Confidence 999999999 9999999999999999999999999999875 22 789999999
Q ss_pred CCCeEeeeCCCCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcC-CCCCCCCC
Q 046289 181 TQGKMAFFDPSRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLA-PADNGKVP 243 (243)
Q Consensus 181 ~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~-~~~~~~~~ 243 (243)
..+.|..++ ..++++.||||+||...+ +++||+.||.|.+|.++..||++++ +.+|++++
T Consensus 398 ~~~kmaffd--~aQdfl~i~gtkm~~~a~-~edp~dg~~~p~~w~vlv~~~~dl~~e~~~~~ls 458 (466)
T KOG0636|consen 398 TQGKMAFFD--RAQDFLFIGGTKMRSLAK-LEDPDDGVMCPSGWKVLVDYYKDLQSEVGNAVLS 458 (466)
T ss_pred cCChhhHHH--HHHHHhhccceeEeechh-ccCCCcccccCcceEEEecchhhhhhhhcccchh
Confidence 999999887 677999999999999777 9999999999999999999999997 78887753
No 10
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=99.63 E-value=3e-16 Score=132.53 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=49.3
Q ss_pred ceEEEEEeccccCCCHHHHHHhhhCCCCCCChhHHHHHHhhCCeEEeeeeEEecc
Q 046289 3 LLFDVYFSIEIYKQPKEERIARTWRTTAPSLPYVDQAITYAGNWLIGGDLEVLEP 57 (243)
Q Consensus 3 ~~lAil~V~ei~~~dk~~~a~~vfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~ 57 (243)
+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|+++++
T Consensus 107 ~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i~~l~~ 160 (160)
T PF14306_consen 107 KPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKIEVLNR 160 (160)
T ss_dssp EEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEEEESS-
T ss_pred CEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEEEEEeC
Confidence 68999999999999999999999999999999999987 8999999999999874
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.41 E-value=1.4e-06 Score=69.23 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=56.0
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHhcC----CCCCe------EEeh-HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCC
Q 046289 68 FAFQRRKPVHNGHALLMTDTRRRLLDMG----CQNPI------ILLH-YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHY 136 (243)
Q Consensus 68 vafQTrnPlHraHe~l~~~~~~~~~e~~----~~~~~------lll~-~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mry 136 (243)
+..=+-||+|+||.+|++.|...+.+.. +.++. .+.. +.|++..+++.+ ..+ .++++++.+
T Consensus 3 ~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~----~~~----~v~~~~~~~ 74 (143)
T cd02039 3 IIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK----DRL----KVVPVDFPE 74 (143)
T ss_pred EEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc----CCc----EEEEEecCh
Confidence 3345789999999999987654430110 00000 0001 668888887664 112 233444444
Q ss_pred CCchHHH-HHHHHHHhcCCcEeEecCCCCC
Q 046289 137 AGPTEVQ-WHAKARINAGANFYIVGRDRAG 165 (243)
Q Consensus 137 AGPrEal-~hAiirkN~GcTHfIvGrdHAG 165 (243)
..+..+. +...+.++++|+++++|.|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~ 104 (143)
T cd02039 75 VKILLAVVFILKILLKVGPDKVVVGEDFAF 104 (143)
T ss_pred hhccCHHHHHHHHHHHcCCcEEEECCcccc
Confidence 4555555 7777888999999999999983
No 12
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.16 E-value=5.8e-05 Score=64.91 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=84.6
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYA 137 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryA 137 (243)
+-||+|.||..+++.+...+ +.. .+++- +.|++-.+..+.+.-++.+++.+.++|...
T Consensus 7 rF~P~H~GHl~~i~~a~~~~-~~v----ii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~--- 78 (181)
T cd02168 7 RFQPFHNGHLAVVLIALEKA-KKV----IILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHL--- 78 (181)
T ss_pred ccCCCCHHHHHHHHHHHHHC-CeE----EEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCC---
Confidence 45799999999988654332 211 11221 789998888877545677888877777732
Q ss_pred CchHHHHHHHHHHhc----CC--cEeEecCCCCCCCCcc-cccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhC
Q 046289 138 GPTEVQWHAKARINA----GA--NFYIVGRDRAGMGLES-EYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARN 210 (243)
Q Consensus 138 GPrEal~hAiirkN~----Gc--THfIvGrdHAG~g~~~-~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~ 210 (243)
..+..|-+-+++.- |- +=.++|.|-.+= .|| ..|+++.|.+ +| ....||+|.||+++.+
T Consensus 79 -~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~-~~~~~lfpe~~~~~--------~p----~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 79 -YSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDAS-SYYLRSFPQWDYLE--------VP----NYPDLNATDIRRAYFE 144 (181)
T ss_pred -CChHHHHHHHHHhChHhhCCCCcEEEeCCccCCC-ccceeecCCcCeec--------Cc----cccccCHHHHHHHHHh
Confidence 35778996665332 22 334556554221 222 1344433321 11 1136999999999999
Q ss_pred C-CCCCCCCcChhHHHHHHHH
Q 046289 211 K-ENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 211 G-~~pP~~f~rpeV~~vl~~~ 230 (243)
| ......+..|.|.+.|.+.
T Consensus 145 ~~g~~~~~lvP~~V~~~I~~~ 165 (181)
T cd02168 145 GKEAMYRAALPAGVYDFLTAF 165 (181)
T ss_pred cCCCChhHhCCHHHHHHHHHh
Confidence 5 2334567889999998876
No 13
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.11 E-value=4e-05 Score=71.68 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=91.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYA 137 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryA 137 (243)
+-||+|.||..+++.+...+ |.. .+++- +.|++-.+..++ -++..++.+.++|...
T Consensus 14 ~F~P~H~GHl~~i~~a~~~~-d~l----~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~--~~~~~r~~~~pi~d~~--- 83 (340)
T PRK05379 14 RFQPFHNGHLAVIREALSRA-KKV----IVLIGSADLARSIKNPFSFEERAQMIRAALA--GIDLARVTIRPLRDSL--- 83 (340)
T ss_pred ccCCCCHHHHHHHHHHHHHC-CEE----EEEEccCCCCCcCCCCCCHHHHHHHHHHHhh--cCCCceEEEEECCCCC---
Confidence 46899999999988764432 221 22331 889999988887 4677788877777742
Q ss_pred CchHHHHHHHHHHh------cCCcEeEecCCCCCCCCcc-cccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhC
Q 046289 138 GPTEVQWHAKARIN------AGANFYIVGRDRAGMGLES-EYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARN 210 (243)
Q Consensus 138 GPrEal~hAiirkN------~GcTHfIvGrdHAG~g~~~-~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~ 210 (243)
.++.+|-+-|++. -..+-.++|.|-.+ ..|| ..|+++-|.+ .+ .+..||||+||+++.+
T Consensus 84 -~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~-~~~~~~~f~~~~~~~--------~~----~~~~~s~T~iR~~~~~ 149 (340)
T PRK05379 84 -YNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA-SSYYLRSFPQWELVD--------VP----NTEDLSATEIRDAYFE 149 (340)
T ss_pred -cChHHHHHHHHHHHHhccCCCCcEEEECCcCCC-ChHHHHhcccccccc--------CC----cccccCccHHHHHHHc
Confidence 3578899887742 34455667766522 2222 2444443331 11 4557999999999999
Q ss_pred CCCCCCC--CcChhHHHHHHHH
Q 046289 211 KENPPDG--FMCPGGWKVLVEY 230 (243)
Q Consensus 211 G~~pP~~--f~rpeV~~vl~~~ 230 (243)
|.....| +..|+|+++|.++
T Consensus 150 ~~~~~~~~~~vP~~v~~~l~~~ 171 (340)
T PRK05379 150 GRISSFYGWAVPAPVYAFLEAF 171 (340)
T ss_pred CCCchhhhhcCCHHHHHHHHHh
Confidence 9986666 8999999999877
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.07 E-value=4.4e-05 Score=70.50 Aligned_cols=139 Identities=14% Similarity=0.027 Sum_probs=84.6
Q ss_pred cCCCccEEE-eecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe-h--------HHHHHHHHHHHHcCCCCCCcEEEeeC
Q 046289 61 QANVDAVFA-FQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILL-H--------YWRMKQHDKVLEDGVLDPETTVVSIF 130 (243)
Q Consensus 61 ~~gw~~Vva-fQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll-~--------~~r~r~y~~~l~~~y~p~~~~~l~~l 130 (243)
+++.++|+| +-|-||+|+||..+.+++.+. .+. +.+++ . +.|++..+..++ -+|. -.+++.-
T Consensus 110 ~~~~~~~~~~~~~FDPiH~GHl~ii~~a~~~-~d~----~~V~i~~~~~~~~~~e~R~~ml~~ai~--~~~~-v~v~~~~ 181 (297)
T cd02169 110 DQPGKKIAAIVMNANPFTLGHRYLVEKAAAE-NDW----VHLFVVSEDKSLFSFADRFKLVKKGTK--HLKN-VTVHSGG 181 (297)
T ss_pred ccCCCceEEEEecCCCCchHHHHHHHHHHhh-CCe----EEEEEEcCCCCCCCHHHHHHHHHHHhC--CCCC-EEEEecC
Confidence 477889999 789999999999998866432 222 22222 2 999999999998 3353 2222322
Q ss_pred CCCcCCC--------------------CchHHHHHHHHHHhcCCcEeEecCCCC-CCCCccc-ccceeEEeCCCCe-Eee
Q 046289 131 PSPMHYA--------------------GPTEVQWHAKARINAGANFYIVGRDRA-GMGLESE-YVKVAAYDKTQGK-MAF 187 (243)
Q Consensus 131 p~~mryA--------------------GPrEal~hAiirkN~GcTHfIvGrdHA-G~g~~~~-~~~~~~Y~~~~~~-~~~ 187 (243)
.+..-++ .|.| -.+ ++.+.+++.+++||-|+. |-+.-.+ .+... +++.+= ..-
T Consensus 182 ~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~-Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~--~~~~gf~v~~ 257 (297)
T cd02169 182 DYIISSATFPSYFIKEQDVVIKAQTALDARI-FRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE--LLSPAIEVIE 257 (297)
T ss_pred CeeeccccChhhhcCChhHHHHHHhcCCHHH-HHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh--cccCCCEEEE
Confidence 2222222 3433 346 888899999999999985 3221111 12111 333221 111
Q ss_pred eCCCCCccccccCHHHHHHHHhCCC
Q 046289 188 FDPSRAQEFLFISGTKMRTLARNKE 212 (243)
Q Consensus 188 ~~~h~~~~~~~iSgt~iR~~L~~G~ 212 (243)
..|... +-..||+|.||++|++|.
T Consensus 258 v~~~~~-~g~~ISST~IR~~l~~G~ 281 (297)
T cd02169 258 IERKKY-DGQPISASTVRQLLKEGN 281 (297)
T ss_pred eccccc-CCcEEcHHHHHHHHHcCC
Confidence 233311 223699999999999997
No 15
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=97.92 E-value=0.00027 Score=59.58 Aligned_cols=134 Identities=20% Similarity=0.130 Sum_probs=84.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYA 137 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryA 137 (243)
+-||+|.||..+++.|...+ |.. .+++- +-|++-.+..+++.-++.+++.+..++.. +
T Consensus 7 ~FdP~H~GHl~~i~~a~~~~-d~l----~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~--~- 78 (163)
T cd02166 7 RFQPFHLGHLKVIKWILEEV-DEL----IIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI--E- 78 (163)
T ss_pred ccCCCCHHHHHHHHHHHHHC-CEE----EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC--C-
Confidence 45899999999988664432 221 11221 67999999777733366778877666543 2
Q ss_pred CchHHHHHHHHHHhcC-CcEeEecCCCCCCCCccc-ccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhCCCCCC
Q 046289 138 GPTEVQWHAKARINAG-ANFYIVGRDRAGMGLESE-YVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKENPP 215 (243)
Q Consensus 138 GPrEal~hAiirkN~G-cTHfIvGrdHAG~g~~~~-~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~pP 215 (243)
.+..|-+-+++... ++-+++|++ |+. .|+++ +-.+...|.. ++..||+|+||+++.+|+..-
T Consensus 79 --~~~~w~~~v~~~vp~~div~~g~~------~~~~~f~~~------g~~v~~~p~~--~~~~~s~t~iR~~~~~~~~~~ 142 (163)
T cd02166 79 --RNSLWVSYVESLTPPFDVVYSGNP------LVARLFKEA------GYEVRRPPMF--NREEYSGTEIRRLMLGGEDWE 142 (163)
T ss_pred --chHHHHHHHHHHCCCCCEEEECch------HHHHhhhhc------CCeEecCCcc--cCCCCCHHHHHHHHHcCCchh
Confidence 35679998887666 565666753 332 22222 1111122321 234699999999998876654
Q ss_pred CCCcChhHHHHHHHH
Q 046289 216 DGFMCPGGWKVLVEY 230 (243)
Q Consensus 216 ~~f~rpeV~~vl~~~ 230 (243)
. +..|+|++.|.+.
T Consensus 143 ~-~vp~~v~~~l~~~ 156 (163)
T cd02166 143 E-LVPKSVAEVIKEI 156 (163)
T ss_pred h-cCCHHHHHHHHHc
Confidence 4 3788898888765
No 16
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=97.69 E-value=0.00052 Score=59.15 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=77.1
Q ss_pred eecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe-h--------HHHHHHHHHHHHcCCCCC------CcEEEeeCCCCc
Q 046289 70 FQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILL-H--------YWRMKQHDKVLEDGVLDP------ETTVVSIFPSPM 134 (243)
Q Consensus 70 fQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll-~--------~~r~r~y~~~l~~~y~p~------~~~~l~~lp~~m 134 (243)
.-+.||+|+||..+.+.+... .+. ..+++ . +.|++-.+.++++ +|+ +...+..+-.+-
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~-~d~----~~V~v~p~~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~~v~~~~~~~ 77 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAE-CDW----VHLFVVSEDASLFSFDERFALVKKGTKD--LDNVTVHSGSDYIISRATFPS 77 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHH-CCc----eEEEEEeCCCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCceeccccChh
Confidence 468899999999998865433 222 23322 1 9999999998872 342 222233333444
Q ss_pred CC-----------C--CchHHHHHHHHHHhcCCcEeEecCCCC-C---CCCcccccceeEEeCCCCeEeeeCCCCCcccc
Q 046289 135 HY-----------A--GPTEVQWHAKARINAGANFYIVGRDRA-G---MGLESEYVKVAAYDKTQGKMAFFDPSRAQEFL 197 (243)
Q Consensus 135 ry-----------A--GPrEal~hAiirkN~GcTHfIvGrdHA-G---~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~ 197 (243)
.| | .|.+= .+ ++.+.+++.+++||.|.. | .|+. +.++++ . +..=+.....+.+. +-.
T Consensus 78 ~~~~~~~~~~~~~a~lsa~~F-i~-~L~~~l~~~~ivvG~df~FG~~~~G~~-~~L~~~-~-~~g~~v~~I~r~~~-~g~ 151 (182)
T smart00764 78 YFLKEQDVVIKSQTTLDLRIF-RK-YIAPALGITHRYVGEEPFSPVTAIYNQ-TMKQTL-L-SPAIEVVEIERKKA-NGQ 151 (182)
T ss_pred hhcCchhHHHHHHhcCCHHHH-HH-HHHHHcCceEEEEcCCCCCCCCCccCH-HHHHHH-h-hCCCEEEEEecccC-CCc
Confidence 44 1 45333 35 578889999999999875 3 3331 133333 1 11111222222211 233
Q ss_pred ccCHHHHHHHHhCCC
Q 046289 198 FISGTKMRTLARNKE 212 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~ 212 (243)
.+|+|.||++|.+|.
T Consensus 152 ~iSST~IR~~L~~G~ 166 (182)
T smart00764 152 PISASTVRKLLKEGN 166 (182)
T ss_pred EECHHHHHHHHHcCC
Confidence 699999999999997
No 17
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=97.61 E-value=0.00079 Score=57.61 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=85.5
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeE-Eeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcC
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPII-LLH--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMH 135 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~l-ll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mr 135 (243)
=|-||+|.||..+++.+...+ . .+-+ ++- +.|++-.+.+++ .. ..+ .+-+...+
T Consensus 6 GsFdP~H~GH~~~~~~a~~~~-~----~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~--~~--~~i--~v~~~e~~ 74 (192)
T cd02165 6 GSFDPPHLGHLAIAEEALEEL-G----LDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIE--DN--PKF--EVSDIEIK 74 (192)
T ss_pred eCCCCCCHHHHHHHHHHHHHc-C----CCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHc--CC--CCE--EEeHHHHh
Confidence 468999999999988654332 1 1222 211 889999998887 22 233 34455555
Q ss_pred CCCchHHH--HHHHHHHhcC-Cc-EeEecCCCC-CCCCccc------ccceeEEeCCCCeEeee-CC-------C---CC
Q 046289 136 YAGPTEVQ--WHAKARINAG-AN-FYIVGRDRA-GMGLESE------YVKVAAYDKTQGKMAFF-DP-------S---RA 193 (243)
Q Consensus 136 yAGPrEal--~hAiirkN~G-cT-HfIvGrdHA-G~g~~~~------~~~~~~Y~~~~~~~~~~-~~-------h---~~ 193 (243)
-.||.-.+ +-.+ ++.|+ ++ .||+|-|-- ....+++ .+.-.++.......... .+ + -.
T Consensus 75 ~~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
T cd02165 75 RDGPSYTIDTLEEL-RERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLD 153 (192)
T ss_pred CCCCCCHHHHHHHH-HHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEec
Confidence 66665543 3333 44454 55 688899863 3444433 12223333321111000 00 0 11
Q ss_pred ccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 194 QEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 194 ~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
.....||+|+||+.+++|..+. .+..|+|.+.|.+.
T Consensus 154 ~~~~~iSST~IR~~~~~g~~~~-~lvp~~V~~yI~~~ 189 (192)
T cd02165 154 NPLLNISSTEIRERLKNGKSIR-YLLPPAVADYIKEH 189 (192)
T ss_pred CCccccCHHHHHHHHHcCCChh-HhCCHHHHHHHHHc
Confidence 2335799999999999997654 77899888888753
No 18
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=97.60 E-value=0.00095 Score=56.77 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=77.3
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe--h--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIILL--H--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMH 135 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~lll--~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mr 135 (243)
+-||+|.||..+++.|... . +-|.+ - +-|++-.+..++ ..+..++.+.+++..
T Consensus 7 ~FdP~H~GHl~ii~~a~~~-~------D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~~~~~~~vP~~d~-- 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKKIAEE-V------DELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVGDLTYYIIPIEDI-- 75 (165)
T ss_pred ccCCCCHHHHHHHHHHHHH-C------CEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCCCceEEEEecCCc--
Confidence 4579999999999866433 2 33322 1 678888877776 344334444444432
Q ss_pred CCCchHHHHHHHHHHhcC-CcEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhCCCCC
Q 046289 136 YAGPTEVQWHAKARINAG-ANFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKENP 214 (243)
Q Consensus 136 yAGPrEal~hAiirkN~G-cTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~p 214 (243)
.....|-+.++.-.. .+.+..| +.- . ...|++.-| . +-.-| -.++..+|||+||+++.+|++
T Consensus 76 ---~~~~~w~~~v~~~~p~~D~vf~~-~~~---~-~~~f~e~g~----~--v~~~p--~~~r~~~S~T~IR~~i~~~~~- 138 (165)
T TIGR01527 76 ---ERNSIWVSYVESMTPPFDVVYSN-NPL---V-RRLFKEAGY----E--VKRPP--MFNRKEYSGTEIRRRMLNGED- 138 (165)
T ss_pred ---cHHHHHHHHHHHhCCCCCEEEEC-CHH---H-HHHHHHcCC----E--EEECC--CcCCCcccHHHHHHHHHcCCC-
Confidence 357789998885443 2222223 100 0 002222211 1 11112 112337999999999999977
Q ss_pred CCCCcChhHHHHHHHH
Q 046289 215 PDGFMCPGGWKVLVEY 230 (243)
Q Consensus 215 P~~f~rpeV~~vl~~~ 230 (243)
=+.+..|.|+++|.|.
T Consensus 139 W~~lVP~~v~~~i~~i 154 (165)
T TIGR01527 139 WEHLVPKAVADVIKEI 154 (165)
T ss_pred hhhhCCHHHHHHHHHc
Confidence 6679999999999874
No 19
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=97.59 E-value=0.0006 Score=58.05 Aligned_cols=132 Identities=19% Similarity=0.192 Sum_probs=74.4
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh---------------------HHHHHHHHHHHHcCCCCCCc
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH---------------------YWRMKQHDKVLEDGVLDPET 124 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~---------------------~~r~r~y~~~l~~~y~p~~~ 124 (243)
.|+++=+-+|+|+||..|++.|.+.+.+.++ ..+++. +-|++-.+.+ -=+.
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~--~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l------~vd~ 72 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGL--PSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL------GVDY 72 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCC--CeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc------CCCE
Confidence 3677788999999999999988666543321 112111 4444443321 1233
Q ss_pred EEEeeCCCCcCCC--CchHHHHHHHHHHhcCCcEeEecCCCC----CCCCcccccceeEEeCCCCeEeeeCCCCCccccc
Q 046289 125 TVVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDRA----GMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLF 198 (243)
Q Consensus 125 ~~l~~lp~~mryA--GPrEal~hAiirkN~GcTHfIvGrdHA----G~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~ 198 (243)
++ ++|....++ -| |....-++-+. ++.+++||.|+. +.|+.. .++ -||++.+--+..-|.-......
T Consensus 73 v~--~~~f~~~~~~~s~-~~Fi~~il~~~-~~~~ivvG~Df~FG~~~~g~~~-~L~--~~~~~~g~~v~~v~~~~~~~~~ 145 (180)
T cd02064 73 LL--VLPFDKEFASLSA-EEFVEDLLVKL-NAKHVVVGFDFRFGKGRSGDAE-LLK--ELGKKYGFEVTVVPPVTLDGER 145 (180)
T ss_pred EE--EeCCCHHHHcCCH-HHHHHHHHhhc-CCeEEEEccCCCCCCCCCCCHH-HHH--HhhhhcCcEEEEeCcEecCCcE
Confidence 33 345443333 34 45555555444 999999999986 333321 222 2444433222222211112336
Q ss_pred cCHHHHHHHHhCCC
Q 046289 199 ISGTKMRTLARNKE 212 (243)
Q Consensus 199 iSgt~iR~~L~~G~ 212 (243)
||+|.||++|++|.
T Consensus 146 iSST~IR~~i~~G~ 159 (180)
T cd02064 146 VSSTRIREALAEGD 159 (180)
T ss_pred EcHHHHHHHHHhCC
Confidence 99999999999996
No 20
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.54 E-value=0.002 Score=56.51 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCeEEeh----------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCC
Q 046289 74 KPVHNGHALLMTDTRRRLLDMGCQNPIILLH----------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYA 137 (243)
Q Consensus 74 nPlHraHe~l~~~~~~~~~e~~~~~~~lll~----------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryA 137 (243)
+|+|.||.++++.++..+ +-|.|- .-|+.-....+++. ...++.+.+++..
T Consensus 14 QPfH~GHl~~I~~al~~~-------devII~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~rv~~ipi~D~---- 80 (196)
T PRK13793 14 QPFHLAHMQTIEIALQQS-------RYVILALGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKRIRFVHVVDV---- 80 (196)
T ss_pred CCCcHHHHHHHHHHHHhC-------CEEEEEEccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcceEEEEecCCc----
Confidence 489999999988654332 333322 45555555444321 3457666656522
Q ss_pred CchHHHHHHHHHHhcCCcEeEecCCC-CCC-CCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhCCCCCC
Q 046289 138 GPTEVQWHAKARINAGANFYIVGRDR-AGM-GLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKENPP 215 (243)
Q Consensus 138 GPrEal~hAiirkN~GcTHfIvGrdH-AG~-g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~pP 215 (243)
.++++|-+-+++--- -++..+. .+. |.|.+ ..-+|.....+|-.. +.+.. +..||||+||+++.+|.+ =
T Consensus 81 -~~~~~Wv~~V~~~v~---~v~~~n~~V~~~g~~k~--e~s~~l~~fpew~~v-~~~~~-r~~~SaT~IR~~~~~g~~-w 151 (196)
T PRK13793 81 -YNDEKWVKQVKSLVN---GVIEPNSKVGLIGHFKD--ESSYYLRLFPEWVMV-ELDSL-KDSISATPMREAYYQGKI-K 151 (196)
T ss_pred -cchhHHHHHHHHhch---hhccCCCcceeeccccc--CceEEEEeCCCCcee-ecccc-cCccchHHHHHHHHcCCC-h
Confidence 478999999998662 1222211 111 11111 111222222222111 00111 457999999999999886 2
Q ss_pred CCCcChhHHHHHHHH
Q 046289 216 DGFMCPGGWKVLVEY 230 (243)
Q Consensus 216 ~~f~rpeV~~vl~~~ 230 (243)
+.+..|.|+++|.++
T Consensus 152 ~~lVP~~V~~~l~~~ 166 (196)
T PRK13793 152 TDAFPKGTIQFLEEF 166 (196)
T ss_pred hhhCCHHHHHHHHHh
Confidence 235899999999876
No 21
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.53 E-value=0.0014 Score=56.08 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=80.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEE--e-h-------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIIL--L-H-------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMH 135 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~ll--l-~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mr 135 (243)
+-||+|.||..+++.+... . +-|. + . +.|++-.+..+.+.-.+.+++.+.++|..
T Consensus 8 ~F~P~H~GHl~~i~~a~~~-~------d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~-- 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKWILEE-V------DELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDI-- 78 (174)
T ss_pred ccCCCCHHHHHHHHHHHHh-C------CEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCc--
Confidence 4579999999998865432 2 3332 2 0 67998888887633445567666655543
Q ss_pred CCCchHHHHHHHHHHhcCCcE-eEecCCCCCCCCccc-ccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhCCCC
Q 046289 136 YAGPTEVQWHAKARINAGANF-YIVGRDRAGMGLESE-YVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKEN 213 (243)
Q Consensus 136 yAGPrEal~hAiirkN~GcTH-fIvGrdHAG~g~~~~-~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~ 213 (243)
..+..|-+-+++--..-. .++| + .|+. .|+++-|- +...| --++..||+|+||+++.+|..
T Consensus 79 ---~~~~~w~~~v~~~~~~~d~v~~~-~-----~y~~~~f~~~g~~------v~~~p--~~~~~~iSsT~IR~~i~~g~~ 141 (174)
T PRK01153 79 ---EFNSIWVSHVESYTPPFDVVYTG-N-----PLVARLFREAGYE------VRQPP--MFNREEYSGTEIRRRMIEGDP 141 (174)
T ss_pred ---chHHHHHHHHHHhCCCCCEEEEC-C-----hHHHHhchhhCCe------EecCC--ccccCCCCHHHHHHHHHcCCc
Confidence 257789998876554333 3333 2 2222 33333221 11111 012447999999999999985
Q ss_pred CCCCCcChhHHHHHHHH
Q 046289 214 PPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 214 pP~~f~rpeV~~vl~~~ 230 (243)
... +..|+|++.|.++
T Consensus 142 w~~-~VPp~V~~~i~~~ 157 (174)
T PRK01153 142 WEE-LVPKSVAEVIKEI 157 (174)
T ss_pred hhh-hCCHHHHHHHHHh
Confidence 332 4788898888776
No 22
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=97.28 E-value=0.0012 Score=54.93 Aligned_cols=132 Identities=22% Similarity=0.214 Sum_probs=73.8
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-----------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCc
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-----------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGP 139 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-----------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGP 139 (243)
=|-||+|.||..+.+.|...+ |.. .+++. +-|++-.+.+++ ..| .+.+..+.
T Consensus 6 GsFdP~H~GHl~l~~~a~~~~-d~v----~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~--~~~v~~~e-------- 68 (153)
T cd02163 6 GSFDPITNGHLDIIERASKLF-DEV----IVAVAVNPSKKPLFSLEERVELIREATK--HLP--NVEVDGFD-------- 68 (153)
T ss_pred eccCCCCHHHHHHHHHHHHHC-CEE----EEEEcCCCCCCCCCCHHHHHHHHHHHHc--CCC--CEEecCCc--------
Confidence 367999999999988664432 321 11111 789998888787 233 33333321
Q ss_pred hHHHHHHHHHHhcCCcEeEecCCCCCCCCcccccceeEEeC-----CCCeEeeeCCCCCccccccCHHHHHHHHhCCCCC
Q 046289 140 TEVQWHAKARINAGANFYIVGRDRAGMGLESEYVKVAAYDK-----TQGKMAFFDPSRAQEFLFISGTKMRTLARNKENP 214 (243)
Q Consensus 140 rEal~hAiirkN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~-----~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~p 214 (243)
. +-.-.-+-+++++||+|-|-- -+ ++....++... ++..+.... ......||+|.||+++++|..
T Consensus 69 --s-~t~~~l~~l~~~~~i~G~d~~--~~-~e~~~~~~~~~r~~~~~~~~i~~~~---~~~~~~iSST~IR~~~~~g~~- 138 (153)
T cd02163 69 --G-LLVDFARKHGANVIVRGLRAV--SD-FEYEFQMAGMNRKLAPEIETVFLMA---SPEYSFISSSLVKEIARFGGD- 138 (153)
T ss_pred --c-hHHHHHHHcCCCEEEECCcch--hh-HHHHHHHHHhCCCCCCCCcEEEEeC---CCccceecHHHHHHHHHcCCC-
Confidence 1 111223677999999996521 01 11000111111 111121111 112234999999999999965
Q ss_pred CCCCcChhHHHHHHH
Q 046289 215 PDGFMCPGGWKVLVE 229 (243)
Q Consensus 215 P~~f~rpeV~~vl~~ 229 (243)
...+..+.|.+-|.|
T Consensus 139 i~~lvP~~V~~yI~~ 153 (153)
T cd02163 139 VSGFVPPVVAKALKE 153 (153)
T ss_pred hhHhCCHHHHHHHhC
Confidence 477888888776653
No 23
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=97.27 E-value=0.0015 Score=54.38 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=74.4
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-----------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCc
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-----------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGP 139 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-----------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGP 139 (243)
=|-||+|.||..+.+.|... .|.. .+++. +-|++-.+..++ .+| .+.+..+. +.
T Consensus 6 GsFdP~H~GHl~l~~~a~~~-~d~v----~~~~~~~p~k~~~~~~~~R~~m~~~a~~--~~~--~~~v~~~e------~y 70 (155)
T TIGR01510 6 GSFDPVTNGHLDIIKRAAAL-FDEV----IVAVAKNPSKKPLFSLEERVELIKDATK--HLP--NVRVDVFD------GL 70 (155)
T ss_pred eecCCCcHHHHHHHHHHHHh-CCEE----EEEEcCCCCCCCCcCHHHHHHHHHHHHh--hCC--CeEEcCcc------ch
Confidence 46899999999998765433 2321 11111 788888888886 233 34455444 11
Q ss_pred hHHHHHHHHHHhcCCcEeEecCCCCCCCCccc-ccceeEEeC----CCCeEeeeCCCCCccccccCHHHHHHHHhCCCCC
Q 046289 140 TEVQWHAKARINAGANFYIVGRDRAGMGLESE-YVKVAAYDK----TQGKMAFFDPSRAQEFLFISGTKMRTLARNKENP 214 (243)
Q Consensus 140 rEal~hAiirkN~GcTHfIvGrdHAG~g~~~~-~~~~~~Y~~----~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~p 214 (243)
-.=.-+-+..++||.|-|.-. + ++ .+....+.. .+..+... .......||+|.||++++.|+.
T Consensus 71 -----t~dt~~~l~~~~~i~G~~~~~--~-~~~~~~~~~~~r~~~~~~~~i~~~---~~~~~~~iSST~IR~~i~~g~~- 138 (155)
T TIGR01510 71 -----LVDYAKELGATFIVRGLRAAT--D-FEYELQMALMNKHLAPEIETVFLM---ASPEYAFVSSSLVKEIASFGGD- 138 (155)
T ss_pred -----HHHHHHHcCCCEEEecCcchh--h-HHHHHHHHhhCcccccCCcEEEEe---CCcchhhccHHHHHHHHHcCCC-
Confidence 112234556788998865430 0 11 000000000 11111111 1112236999999999999975
Q ss_pred CCCCcChhHHHHHHH
Q 046289 215 PDGFMCPGGWKVLVE 229 (243)
Q Consensus 215 P~~f~rpeV~~vl~~ 229 (243)
...++.|+|++-|.+
T Consensus 139 ~~~lvP~~V~~YI~~ 153 (155)
T TIGR01510 139 VSNLVPPAVARRLKA 153 (155)
T ss_pred hhHHCCHHHHHHHHH
Confidence 567999998888765
No 24
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=97.21 E-value=0.0098 Score=51.09 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=82.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeE-Eeh---------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcC
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPII-LLH---------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMH 135 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~l-ll~---------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mr 135 (243)
|-||+|.||..+.+.|.+.+ +. +-+ ++- +.|++-.+.++++ .| ...++ ....+
T Consensus 5 sFdP~H~GHl~l~~~a~~~~-~~----d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~--~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEEALDHL-DL----DKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NP--KFEVD--DFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHHHHHHc-CC----CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC--CEEEe--HHHHh
Confidence 67999999999977553321 11 223 211 7899999988872 23 33333 45556
Q ss_pred CCCchH--HHHHHHHHHhcC-Cc-EeEecCCCC-CCCCccc------ccceeEEeCCCCeEe--------------eeCC
Q 046289 136 YAGPTE--VQWHAKARINAG-AN-FYIVGRDRA-GMGLESE------YVKVAAYDKTQGKMA--------------FFDP 190 (243)
Q Consensus 136 yAGPrE--al~hAiirkN~G-cT-HfIvGrdHA-G~g~~~~------~~~~~~Y~~~~~~~~--------------~~~~ 190 (243)
-.||.= -.+. -+++.|. +. .||+|-|-. .....++ ...-.++-....... ....
T Consensus 74 ~~~~syT~~tl~-~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~ 152 (193)
T TIGR00482 74 RGGPSYTIDTLK-HLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTL 152 (193)
T ss_pred CCCCCCHHHHHH-HHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEE
Confidence 666622 2233 3455564 33 589999874 2333332 112223322110000 0000
Q ss_pred CCCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 191 SRAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 191 h~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
-......||+|+||+++++|+.+. .+..|+|.+-|.+.
T Consensus 153 -~~~~~~~iSST~IR~~l~~g~~~~-~lvP~~V~~YI~~~ 190 (193)
T TIGR00482 153 -LHNPRVPISSTEIRQRIRQGKSIE-YLLPDPVIKYIKQH 190 (193)
T ss_pred -EcCCccccCHHHHHHHHHcCCCch-hhCCHHHHHHHHHh
Confidence 011235799999999999998754 57889898888764
No 25
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.20 E-value=0.0034 Score=57.81 Aligned_cols=131 Identities=17% Similarity=0.173 Sum_probs=76.1
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe----h----------------HHHHHHHHHHHHcCCCCCCcEEE
Q 046289 68 FAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILL----H----------------YWRMKQHDKVLEDGVLDPETTVV 127 (243)
Q Consensus 68 vafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll----~----------------~~r~r~y~~~l~~~y~p~~~~~l 127 (243)
+++=.-+.+|+||..|++.+...|.+.+. +.+++ | +-|.+ +++ -+--+.++
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~--~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~----~l~--~~Gvd~~~- 72 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGL--PPAVLLFEPHPSEQFNWLTAPALTPLEDKAR----QLQ--IKGVEQLL- 72 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCC--CEEEEEeCCChHHHhCccCCCCCCCHHHHHH----HHH--HcCCCEEE-
Confidence 44455688999999999988777766543 22222 1 22222 222 12234443
Q ss_pred eeCCCC--cCCCCchHHHHHHHHHHhcCCcEeEecCCCC----CCCCcccccceeEEeCCCCeEeeeCCCCCccccccCH
Q 046289 128 SIFPSP--MHYAGPTEVQWHAKARINAGANFYIVGRDRA----GMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISG 201 (243)
Q Consensus 128 ~~lp~~--mryAGPrEal~hAiirkN~GcTHfIvGrdHA----G~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSg 201 (243)
++|.. +.--.| |.-..-++.+.+++.+++||-|+. +-|+.. .++. ||++.+--+..-|--..+ ..||+
T Consensus 73 -~~~F~~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~-~L~~--~~~~~g~~v~~~~~~~~~-~~ISS 146 (288)
T TIGR00083 73 -VVVFDEEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFL-LLQL--FGNTTIFCVIVKQLFCQD-IRISS 146 (288)
T ss_pred -EeCCCHHHHcCCH-HHHHHHHHHhccCCcEEEECCCccCCCCCCCCHH-HHHH--hccccCcEEEEeccccCC-CeECH
Confidence 34544 333345 555566777889999999999986 334422 2222 344433222221211223 57999
Q ss_pred HHHHHHHhCCCC
Q 046289 202 TKMRTLARNKEN 213 (243)
Q Consensus 202 t~iR~~L~~G~~ 213 (243)
|.||++|++|..
T Consensus 147 T~IR~~l~~G~i 158 (288)
T TIGR00083 147 SAIRQALKNGDL 158 (288)
T ss_pred HHHHHHHHcCCH
Confidence 999999999963
No 26
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=97.16 E-value=0.0017 Score=55.39 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=75.5
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe----h---------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCC-
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILL----H---------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHY- 136 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll----~---------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mry- 136 (243)
=|-||+|.||..+.+.+ ..+| -++++ + +-|++-.+.+++ + +....+.++.+. .+-
T Consensus 9 GSFDP~H~GHl~ia~~~--~~~d-----~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~-~-~~~~~~~v~~~E--~~~~ 77 (174)
T PRK08887 9 SAFNPPSLGHKSVIESL--SHFD-----LVLLVPSIAHAWGKTMLDYETRCQLVDAFIQ-D-LGLSNVQRSDIE--QELY 77 (174)
T ss_pred CCCCCCCHHHHHHHHHh--hcCC-----EEEEEECCCCcccCCCCCHHHHHHHHHHHHh-c-cCCCceEEehHH--hhhc
Confidence 36899999999996641 1122 12222 1 779999998888 2 322234444333 332
Q ss_pred --CCchH--HHHHHHHHHhcCC-c-EeEecCCCCC-CCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHh
Q 046289 137 --AGPTE--VQWHAKARINAGA-N-FYIVGRDRAG-MGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLAR 209 (243)
Q Consensus 137 --AGPrE--al~hAiirkN~Gc-T-HfIvGrdHAG-~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~ 209 (243)
.||.= ..+-.+ ++.|.- . .||+|-|-.- ....++ .++. ++.|. ++ .+| ....||+|+||++++
T Consensus 78 ~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~~l~~W~~-~~~i--~~~~~-l~-~~~----~~~~ISST~IR~~l~ 147 (174)
T PRK08887 78 APDESVTTYALLTRL-QELYPEADLTFVIGPDNFLKFAKFYK-ADEI--TQRWT-VM-ACP----EKVPIRSTDIRNALQ 147 (174)
T ss_pred cCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHHHHHHhCC-HHHH--HhhCe-EE-EeC----CCCCcCHHHHHHHHH
Confidence 33321 122233 333432 2 2788998541 111111 0000 01111 11 122 135799999999999
Q ss_pred CCCCCCCCCcChhHHHHHHHH
Q 046289 210 NKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 210 ~G~~pP~~f~rpeV~~vl~~~ 230 (243)
.|..+. .+..++|.+-|.+.
T Consensus 148 ~g~~i~-~lvp~~V~~yI~~~ 167 (174)
T PRK08887 148 NGKDIS-HLTTPGVARLLKEH 167 (174)
T ss_pred cCCChh-HhCCHHHHHHHHHc
Confidence 999866 77899888888763
No 27
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=97.16 E-value=0.0049 Score=51.61 Aligned_cols=142 Identities=20% Similarity=0.180 Sum_probs=81.1
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHhcCC----CCCe--EEeh-HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCch
Q 046289 68 FAFQRRKPVHNGHALLMTDTRRRLLDMGC----QNPI--ILLH-YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPT 140 (243)
Q Consensus 68 vafQTrnPlHraHe~l~~~~~~~~~e~~~----~~~~--lll~-~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGPr 140 (243)
+-.=|-||+|.||..+.+.|.... |... .++. -++. +-|++-.+..++ .+| .+.+..+. -| ..
T Consensus 5 i~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~--~v~v~~~e---~~--t~ 74 (159)
T PRK00168 5 IYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINPSKKPLFSLEERVELIREATA--HLP--NVEVVSFD---GL--LV 74 (159)
T ss_pred EEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCC--CEEEecCC---cc--HH
Confidence 334678999999999987654332 3210 0110 0011 789998888777 343 34444332 01 11
Q ss_pred HHHHHHHHHHhcCCcEeEecCCCCCCCCcccccceeEEeC-----CCCeEeeeCCCCCccccccCHHHHHHHHhCCCCCC
Q 046289 141 EVQWHAKARINAGANFYIVGRDRAGMGLESEYVKVAAYDK-----TQGKMAFFDPSRAQEFLFISGTKMRTLARNKENPP 215 (243)
Q Consensus 141 Eal~hAiirkN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~-----~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~pP 215 (243)
+ ..+.+++++|+.|=|--. ++...+ .++... .+...... .......||+|.||++++.|. +.
T Consensus 75 ~------~~~~~~~~~~~~gl~~w~--d~e~~~-~~~~~~r~~~~~~~~i~~~---~~~~~~~ISST~IR~~i~~g~-~i 141 (159)
T PRK00168 75 D------FAREVGATVIVRGLRAVS--DFEYEF-QMAGMNRKLAPEIETVFLM---PSPEYSFISSSLVKEVARLGG-DV 141 (159)
T ss_pred H------HHHHcCCCEEEecCcchh--hHHHHH-HHHHhCCCCCCCCcEEEEe---CCCCcceecHHHHHHHHHcCC-Ch
Confidence 1 235678999998854221 111010 011011 12222222 112224699999999999997 57
Q ss_pred CCCcChhHHHHHHHHHh
Q 046289 216 DGFMCPGGWKVLVEYYD 232 (243)
Q Consensus 216 ~~f~rpeV~~vl~~~~~ 232 (243)
..|..++|.+.|.+.++
T Consensus 142 ~~lVP~~V~~yI~~~~~ 158 (159)
T PRK00168 142 SGFVPPAVAKALKEKFA 158 (159)
T ss_pred hHHCCHHHHHHHHHHhc
Confidence 89999999999988765
No 28
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=96.94 E-value=0.022 Score=49.29 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=80.4
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeE-Ee-h--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCc
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPII-LL-H--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPM 134 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~l-ll-~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~m 134 (243)
=+-||+|.||..|.+.+... . +. +.+ ++ . +.|++-.+.++++ .| .+.++ +...
T Consensus 11 GsFdP~H~GH~~l~~~a~~~-~--~~--d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~--~~E~ 79 (203)
T PRK00071 11 GTFDPPHYGHLAIAEEAAER-L--GL--DEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NP--RFSVS--DIEL 79 (203)
T ss_pred eCCCccCHHHHHHHHHHHHH-c--CC--CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CC--ceEEe--HHHH
Confidence 56899999999998765322 1 11 222 21 1 7799999888872 33 23343 3333
Q ss_pred CCCCchHHH--HHHHHHHhcCCc--EeEecCCCC-CCCCccc------ccceeEEeCCCCeEeee-----------CCC-
Q 046289 135 HYAGPTEVQ--WHAKARINAGAN--FYIVGRDRA-GMGLESE------YVKVAAYDKTQGKMAFF-----------DPS- 191 (243)
Q Consensus 135 ryAGPrEal--~hAiirkN~GcT--HfIvGrdHA-G~g~~~~------~~~~~~Y~~~~~~~~~~-----------~~h- 191 (243)
.-.||.=.+ +. .+++.|.-+ .||+|.|-- .+...++ .+.-.++-......... +..
T Consensus 80 ~~~~~syT~~tl~-~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i 158 (203)
T PRK00071 80 ERPGPSYTIDTLR-ELRARYPDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAI 158 (203)
T ss_pred hCCCCCCHHHHHH-HHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCE
Confidence 334444222 22 234556433 589999842 2222222 11122222211000000 000
Q ss_pred --CCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 192 --RAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 192 --~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
-......||+|+||++|++|..+ ..+..|+|.+-|.+.
T Consensus 159 ~~~~~~~~~ISST~IR~~l~~g~~~-~~lvp~~V~~YI~~~ 198 (203)
T PRK00071 159 TLLDVPLLAISSTAIRERIKEGRPI-RYLLPEAVLDYIEKH 198 (203)
T ss_pred EEEeCCCCccCHHHHHHHHHcCCCh-hHhCCHHHHHHHHHh
Confidence 01123579999999999999864 678899999988774
No 29
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.92 E-value=0.0069 Score=56.19 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh---------------------HHHHHHHHHHHHcCCCCCCc
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH---------------------YWRMKQHDKVLEDGVLDPET 124 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~---------------------~~r~r~y~~~l~~~y~p~~~ 124 (243)
.|+++=+-+-+|+||..|++.|...+.+.+. ..+++. +-|.+..+++ | =|.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~--~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~---g---VD~ 86 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGL--PSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL---G---VDY 86 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCC--CEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc---C---CCE
Confidence 7888889999999999999987665544321 121111 4444433321 1 244
Q ss_pred EEEeeCCCCc--CCCCchHHHHHHHHHHhcCCcEeEecCCCC-C---CCCcccccceeEEeCCCCeEeee-CCCCCcccc
Q 046289 125 TVVSIFPSPM--HYAGPTEVQWHAKARINAGANFYIVGRDRA-G---MGLESEYVKVAAYDKTQGKMAFF-DPSRAQEFL 197 (243)
Q Consensus 125 ~~l~~lp~~m--ryAGPrEal~hAiirkN~GcTHfIvGrdHA-G---~g~~~~~~~~~~Y~~~~~~~~~~-~~h~~~~~~ 197 (243)
+++ +|..- .--.| |..++-++.+.+++.+++||.|+. | .|++ +.++. ||++.+--+.. .+. ..+..
T Consensus 87 ~~~--~~F~~~~~~ls~-e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~-~~L~~--~~~~~g~~v~~v~~~-~~~~~ 159 (305)
T PRK05627 87 VLV--LPFDEEFAKLSA-EEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDF-ELLKE--AGKEFGFEVTIVPEV-KEDGE 159 (305)
T ss_pred EEE--ecCCHHHhcCCH-HHHHHHHHHhccCCCEEEECCCCCCCCCCCCCH-HHHHH--HHHHcCcEEEEeccE-ecCCC
Confidence 443 44432 22234 566777888999999999999995 2 2332 12222 33433322222 222 11223
Q ss_pred ccCHHHHHHHHhCCC
Q 046289 198 FISGTKMRTLARNKE 212 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~ 212 (243)
.+|+|.||++|++|.
T Consensus 160 ~ISST~IR~~I~~G~ 174 (305)
T PRK05627 160 RVSSTAIRQALAEGD 174 (305)
T ss_pred cCchHHHHHHHHcCC
Confidence 699999999999995
No 30
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=96.89 E-value=0.022 Score=51.27 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=84.8
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCC
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYA 137 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryA 137 (243)
=|-||+|.||..+.+.+.+. .+. .-++++- +-|++-.+..+++.-.+... +.+......-.
T Consensus 29 GSFdPiH~GHl~ia~~~~~~---l~l-d~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~--~~v~~~Ei~~~ 102 (243)
T PRK06973 29 GTFDPIHDGHLALARRFADV---LDL-TELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVT--VRVATDEIEHA 102 (243)
T ss_pred CCCCCCcHHHHHHHHHHHHH---cCC-CEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCce--EEEeHhhhhCC
Confidence 56999999999996644322 111 1223321 67999888888721112223 34445555557
Q ss_pred CchHHHH-HHHHHHhcC--Cc-EeEecCCCC-CCCCccc------ccceeEEeCCC---CeEee----------------
Q 046289 138 GPTEVQW-HAKARINAG--AN-FYIVGRDRA-GMGLESE------YVKVAAYDKTQ---GKMAF---------------- 187 (243)
Q Consensus 138 GPrEal~-hAiirkN~G--cT-HfIvGrdHA-G~g~~~~------~~~~~~Y~~~~---~~~~~---------------- 187 (243)
||.=.+- =..+++.|| +. .||+|-|-. .+...++ ...-.++-... .+...
T Consensus 103 g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~~R~g~~~~~~~~~~~~~l~~~~~~~~~l 182 (243)
T PRK06973 103 GPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAATRPGFDLGAASPAVAAEIAARQADADVL 182 (243)
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEEECCCCCcccchhHHHHHHhhhhhhhhhh
Confidence 7765441 134566683 43 699999864 3333222 11122222110 00000
Q ss_pred -eCCC-----CCccccccCHHHHHHHHhCCC-------CCCCCCcChhHHHHHHHH
Q 046289 188 -FDPS-----RAQEFLFISGTKMRTLARNKE-------NPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 188 -~~~h-----~~~~~~~iSgt~iR~~L~~G~-------~pP~~f~rpeV~~vl~~~ 230 (243)
..+. .....+.||+|+||++|++|. .....+..++|.+-|.+.
T Consensus 183 ~~~~~g~~~~~~~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~ 238 (243)
T PRK06973 183 QATPAGHLLIDTTLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQH 238 (243)
T ss_pred hcCCCceEEEcCCCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHc
Confidence 0000 111235799999999999992 345567888888888764
No 31
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=96.53 E-value=0.018 Score=53.59 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=78.2
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh-------------------HHHHHHHHHHHHcCCCCCCcE
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH-------------------YWRMKQHDKVLEDGVLDPETT 125 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~-------------------~~r~r~y~~~l~~~y~p~~~~ 125 (243)
..|++.=.-+=+|+||..|++.+.+.|.+.+. +.+.+. ..+-|.. .+. -+.=|.+
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~--~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~--~l~--~~gvd~~ 89 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGL--PVVVITFEPHPRELLKPDKPPTRLTPLREKIR--LLA--GYGVDAL 89 (304)
T ss_pred CcEEEEEcCCccchhHHHHHHHHHHHHHHhCC--ceEEEEecCCCHHHcCCCCCccccCCHHHHHH--HHH--hcCCcEE
Confidence 45666666677999999999988877766542 333322 1222221 233 2344554
Q ss_pred EEeeCCCCcCCC--CchHHHHHHHHHHhcCCcEeEecCCCC-CCCCcccccceeEEeCCCCe-EeeeCCCCCccccccCH
Q 046289 126 VVSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDRA-GMGLESEYVKVAAYDKTQGK-MAFFDPSRAQEFLFISG 201 (243)
Q Consensus 126 ~l~~lp~~mryA--GPrEal~hAiirkN~GcTHfIvGrdHA-G~g~~~~~~~~~~Y~~~~~~-~~~~~~h~~~~~~~iSg 201 (243)
++ ++..-.+| .|. .-.+ ++-+++.|.|++||-|.- |=+...++..--.+|.+ +- .....+. ..+...||+
T Consensus 90 ~v--~~F~~~fa~ls~~-~Fv~-~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~-~~~~~~iSS 163 (304)
T COG0196 90 VV--LDFDLEFANLSAE-EFVE-LLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKI-NEEGIRISS 163 (304)
T ss_pred EE--EeCCHhHhhCCHH-HHHH-HHHhccCCcEEEEecccccCCCCCCCHHHHHHhccC-CceEEEeccE-ecCCcEEch
Confidence 44 44444444 564 4455 999999999999999864 22221211111123333 11 1112222 222367999
Q ss_pred HHHHHHHhCCCC
Q 046289 202 TKMRTLARNKEN 213 (243)
Q Consensus 202 t~iR~~L~~G~~ 213 (243)
|.||+.|++|..
T Consensus 164 t~IR~~L~~gdl 175 (304)
T COG0196 164 TAIRQALREGDL 175 (304)
T ss_pred HHHHHHHhcCCH
Confidence 999999999963
No 32
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=96.51 E-value=0.1 Score=46.50 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=87.1
Q ss_pred cEEE-ee-cCCCCcchHHHHHHHHHHHHHhcCCCCCeE---Ee------h-------HHHHHHHHHHHHcCCCCCCcEEE
Q 046289 66 AVFA-FQ-RRKPVHNGHALLMTDTRRRLLDMGCQNPII---LL------H-------YWRMKQHDKVLEDGVLDPETTVV 127 (243)
Q Consensus 66 ~Vva-fQ-TrnPlHraHe~l~~~~~~~~~e~~~~~~~l---ll------~-------~~r~r~y~~~l~~~y~p~~~~~l 127 (243)
+|++ |- |-||+|.||..+.+.|.+. ++..- -..+ ++ + +.|++-.+..+++ .|. +
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~-l~~d~-~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~~----~ 93 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARDA-LMSEG-YHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SDF----I 93 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHH-HhhcC-cEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CCC----e
Confidence 5666 44 7999999999998755433 33210 0111 11 1 6788888877762 222 4
Q ss_pred eeCCCCcCCCCchHHHHH-HHHHHhcC---------Cc-EeEecCCC-CCCC---Cccc--------ccceeEEeCCCCe
Q 046289 128 SIFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDR-AGMG---LESE--------YVKVAAYDKTQGK 184 (243)
Q Consensus 128 ~~lp~~mryAGPrEal~h-AiirkN~G---------cT-HfIvGrdH-AG~g---~~~~--------~~~~~~Y~~~~~~ 184 (243)
.+-++...-.||.-.+-. ..+++-|+ +. -||+|-|- .... ..+. .+...++......
T Consensus 94 ~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~~~~~vV~~R~g~~ 173 (236)
T PLN02945 94 MVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRDYGVVCIRREGQD 173 (236)
T ss_pred EecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCC
Confidence 455666677777644332 23566563 22 58999985 2222 2221 1222344332111
Q ss_pred Ee---eeCC-------C----CCccccccCHHHHHHHHhCCCCCCCCCcChhHHHHHHH
Q 046289 185 MA---FFDP-------S----RAQEFLFISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229 (243)
Q Consensus 185 ~~---~~~~-------h----~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~ 229 (243)
.. +.++ . .......||+|+||+++++|..+. .+..|+|.+-|.+
T Consensus 174 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~-~lvP~~V~~YI~~ 231 (236)
T PLN02945 174 VEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVK-YLTPDGVIDYIKE 231 (236)
T ss_pred HHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCch-hhCCHHHHHHHHH
Confidence 10 0000 0 010125699999999999998754 7788888888875
No 33
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=96.29 E-value=0.07 Score=44.78 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=65.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCC-
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH--------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHY- 136 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mry- 136 (243)
+-||+|.||..+++.|...+ |.. .+++- +-|++-.+..+++ + ..+.+..++.+-..
T Consensus 7 ~F~P~H~GHl~li~~a~~~~-d~v----~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~--~~~~v~~~~~~d~~~ 77 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQV-DEL----LIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--Q--ENIVVHTLNEPDIPE 77 (158)
T ss_pred ccCCCCHHHHHHHHHHHHHC-CEE----EEEECCCCcccccCCCCCHHHHHHHHHHHhcC--C--CCEEEEeCCCCCCCC
Confidence 56899999999988764432 221 11211 7899888887762 2 34556667765543
Q ss_pred CCchHHHHHHHHHHhcCC------cEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHH
Q 046289 137 AGPTEVQWHAKARINAGA------NFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLA 208 (243)
Q Consensus 137 AGPrEal~hAiirkN~Gc------THfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L 208 (243)
--..-..|-+.|+...+- +..++|-+. |-..++ .+|-.. -++...+|. ..+..||||+||+-.
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~-~~~~~~-----~~~~~~-~~~~~v~~~--r~~~~iSaT~IR~~p 146 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEY-EAAFEL-----VLAYLG-AQVVLVDPD--RTDISVSATQIRENP 146 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEccCc-chhhhh-----HhhcCC-CeEEEeccc--cccCCcCHHHHHhCH
Confidence 212344457777766652 334444332 111100 012122 255554442 224689999999743
No 34
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=96.22 E-value=0.02 Score=45.77 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=61.9
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh----------------HHHHHHHHHHHHcCCCCCCcEEEe
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH----------------YWRMKQHDKVLEDGVLDPETTVVS 128 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~----------------~~r~r~y~~~l~~~y~p~~~~~l~ 128 (243)
+.|++.=+-+++|+||..+++.|...+.+. .+.+. +-|++..+.+ ++. +.+ +
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l-----~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d~v-~- 69 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKL-----IVAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--DLV-I- 69 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEE-----EEEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--CEE-e-
Confidence 356777788999999999998764332111 11111 5566555432 111 222 1
Q ss_pred eCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHH
Q 046289 129 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLA 208 (243)
Q Consensus 129 ~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L 208 (243)
| +..|.+-+-. + +.+.++++++|.|+.| . ++.++++ | +... .|- ...+|+|.||++|
T Consensus 70 --~----~~~~~~f~~~--~-~~l~~~~vv~G~d~~g--~-~~~l~~~--~----~v~~-~~~----~~~iSSt~Ir~~i 126 (129)
T cd02171 70 --P----ETNWEQKIED--I-KKYNVDVFVMGDDWEG--K-FDFLKEY--C----EVVY-LPR----TKGISSTQLKEML 126 (129)
T ss_pred --c----CCCccChHHH--H-HHhCCCEEEECCCCcc--h-HHHHHhC--c----EEEE-eCC----CCCcChHHHHHHH
Confidence 2 2333332222 3 6789999999999964 3 2233332 1 2222 221 2369999999998
Q ss_pred hC
Q 046289 209 RN 210 (243)
Q Consensus 209 ~~ 210 (243)
+.
T Consensus 127 ~~ 128 (129)
T cd02171 127 KK 128 (129)
T ss_pred hh
Confidence 63
No 35
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.05 E-value=0.12 Score=48.25 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeE-Eeh---------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCc
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPII-LLH---------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPM 134 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~l-ll~---------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~m 134 (243)
=|-||+|.||..|.+.+.+. .++ +-+ ++- +-|++-.+.++++ .| .+.++ +...
T Consensus 8 GsFdP~H~GHl~la~~a~~~---~~~--d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~--~~--~~~v~--~~E~ 76 (342)
T PRK07152 8 GSFDPIHKGHINIAKKAIKK---LKL--DKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN--LP--KMEVS--DFEI 76 (342)
T ss_pred eCCCCcCHHHHHHHHHHHHH---hCC--CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh--CC--CeEEe--HHHH
Confidence 57899999999997654322 121 222 211 5688888888873 23 33333 4444
Q ss_pred CCCCchHHH-HHHHHHHhcCCc--EeEecCCCC-CCCCccc------ccceeEEeCCCCeEeee---CCC--CCcccccc
Q 046289 135 HYAGPTEVQ-WHAKARINAGAN--FYIVGRDRA-GMGLESE------YVKVAAYDKTQGKMAFF---DPS--RAQEFLFI 199 (243)
Q Consensus 135 ryAGPrEal-~hAiirkN~GcT--HfIvGrdHA-G~g~~~~------~~~~~~Y~~~~~~~~~~---~~h--~~~~~~~i 199 (243)
+-.||.=.+ --..+++.|.=+ .||+|.|-. .+...++ -..-.++-......... .+. -......|
T Consensus 77 ~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i 156 (342)
T PRK07152 77 KRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI 156 (342)
T ss_pred hCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence 445654121 113345556433 679999864 2222221 11223332211000000 000 01123579
Q ss_pred CHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 200 SGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 200 Sgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
|+|+||+++++|. ..|+|++.|.+.
T Consensus 157 SST~IR~~~~~~~------vP~~V~~YI~~~ 181 (342)
T PRK07152 157 SSTKIRKGNLLGK------LDPKVNDYINEN 181 (342)
T ss_pred CHHHHHHHHHcCC------CCHHHHHHHHHc
Confidence 9999999999998 557888888765
No 36
>PRK07143 hypothetical protein; Provisional
Probab=95.55 E-value=0.11 Score=47.79 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=72.6
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh------------------HHHHHHHHHHHHcCCCCCCcEE
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH------------------YWRMKQHDKVLEDGVLDPETTV 126 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~------------------~~r~r~y~~~l~~~y~p~~~~~ 126 (243)
..|+++=.-+-+|+||..|++.|. +.+. +.+++- +-|++..+ . +--+.++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~----~~~~--~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~---~---~Gvd~~~ 83 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAK----ESND--EIVIVIFKNPENLPKNTNKKFSDLNSRLQTLA---N---LGFKNII 83 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHH----HCCC--cEEEEEeCChHHhcccCcccCCCHHHHHHHHH---H---CCCCEEE
Confidence 468888899999999999998653 3321 111111 33333322 1 2224544
Q ss_pred EeeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCC-C---CCCcccccceeEEeCCCCeEeeeCCCCCccccccCHH
Q 046289 127 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRA-G---MGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGT 202 (243)
Q Consensus 127 l~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHA-G---~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt 202 (243)
+-.|...+.--.|.|=+ .-++ + +++.+++||.|+. | -|+.. .++.+ |. +.....+.. .+-..||+|
T Consensus 84 ~~~F~~~~a~ls~e~Fi-~~ll-~-l~~~~iVvG~Df~FG~~r~G~~~-~L~~~--~~---~v~~v~~~~-~~g~~ISST 153 (279)
T PRK07143 84 LLDFNEELQNLSGNDFI-EKLT-K-NQVSFFVVGKDFRFGKNASWNAD-DLKEY--FP---NVHIVEILK-INQQKISTS 153 (279)
T ss_pred EeCCCHHHhCCCHHHHH-HHHH-h-cCCCEEEECCCcccCCCCCCCHH-HHHHh--CC---cEEEeCCEE-cCCcEEcHH
Confidence 43344445555775544 3354 4 9999999999987 3 33322 33332 32 222222221 122369999
Q ss_pred HHHHHHhCCC
Q 046289 203 KMRTLARNKE 212 (243)
Q Consensus 203 ~iR~~L~~G~ 212 (243)
.||++|++|.
T Consensus 154 ~IR~~l~~G~ 163 (279)
T PRK07143 154 LLKEFIEFGD 163 (279)
T ss_pred HHHHHHHcCC
Confidence 9999999995
No 37
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=95.54 E-value=0.12 Score=45.18 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=84.4
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh---------------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcC
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH---------------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMH 135 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~---------------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mr 135 (243)
=|-||+|-||..+.+.+++. ++. ..++++- +-|++-.+.++++ .|+ +.+-...+.
T Consensus 10 GsFdP~H~GHl~ia~~~~~~-l~l---d~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~--~~~----~~v~~~e~~ 79 (197)
T COG1057 10 GSFDPPHYGHLLIAEEALDQ-LGL---DKVIFLPSPVPPHKKKKELASAEHRLAMLELAIED--NPR----FEVSDREIK 79 (197)
T ss_pred cCCCCCCHHHHHHHHHHHHh-cCC---CeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhc--CCC----cceeHHHHH
Confidence 57899999999997655332 222 1234431 7899999988883 233 233345555
Q ss_pred CCCch---HHHHHHHHHHhcCCc-EeEecCCC-CCCCCccc------ccceeEEeCCCCe-EeeeCC----C---CCccc
Q 046289 136 YAGPT---EVQWHAKARINAGAN-FYIVGRDR-AGMGLESE------YVKVAAYDKTQGK-MAFFDP----S---RAQEF 196 (243)
Q Consensus 136 yAGPr---Eal~hAiirkN~GcT-HfIvGrdH-AG~g~~~~------~~~~~~Y~~~~~~-~~~~~~----h---~~~~~ 196 (243)
--|+. +.|-|-.=+.|-... -||+|.|. +.+...++ -++-.++...... ...... . -....
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLPR 159 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCcc
Confidence 56665 666554434444442 38999997 45555443 1222232222220 000011 0 12344
Q ss_pred cccCHHHHHHHHhCCCCCCCCCcChhHHHHHHH
Q 046289 197 LFISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229 (243)
Q Consensus 197 ~~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~ 229 (243)
..||+|.||+++++|+.+ ..+..++|.+-|.+
T Consensus 160 ~~ISSt~IR~~~~~~~~~-~~llP~~V~~YI~~ 191 (197)
T COG1057 160 LDISSTEIRERIRRGASV-DYLLPDSVLSYIEE 191 (197)
T ss_pred ccCchHHHHHHHhCCCCc-hhcCCHHHHHHHHH
Confidence 579999999999999754 34555666655544
No 38
>PRK13670 hypothetical protein; Provisional
Probab=93.67 E-value=0.4 Score=46.08 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=51.4
Q ss_pred cEEEeec-CCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh--------------HHHHHHHHHHHHcCCCCCCcEEEeeC
Q 046289 66 AVFAFQR-RKPVHNGHALLMTDTRRRLLDMGCQNPIILLH--------------YWRMKQHDKVLEDGVLDPETTVVSIF 130 (243)
Q Consensus 66 ~VvafQT-rnPlHraHe~l~~~~~~~~~e~~~~~~~lll~--------------~~r~r~y~~~l~~~y~p~~~~~l~~l 130 (243)
+|+|--+ -||+|+||.++++.+.+.+-+ +. ..+.+. +.|.+.. ++. --|-++ .+
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~--~~~Vmp~~f~qrg~p~i~~~~~R~~~a---~~~---GvD~vi--el 70 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DV--TIAVMSGNFVQRGEPAIVDKWTRAKMA---LEN---GVDLVV--EL 70 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CC--cEEEecHHHhCCCCCCCCCHHHHHHHH---HHc---CCCEEE--Ee
Confidence 3566444 699999999999977655433 21 222222 4454432 332 234443 46
Q ss_pred CCCcCCCCchHHHHHH---HHHHhcCCcEeEecCCCCC
Q 046289 131 PSPMHYAGPTEVQWHA---KARINAGANFYIVGRDRAG 165 (243)
Q Consensus 131 p~~mryAGPrEal~hA---iirkN~GcTHfIvGrdHAG 165 (243)
|..+--..| |.-... ++ +.+||+++++|-|..+
T Consensus 71 pf~~a~~sa-e~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 71 PFLYSVQSA-DFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred CCchHhCCH-HHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 666333344 333333 67 8899999999999444
No 39
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=93.39 E-value=0.36 Score=38.77 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh----------------HHHHHHHHHHHHcCCCCCCcEEEee
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH----------------YWRMKQHDKVLEDGVLDPETTVVSI 129 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~----------------~~r~r~y~~~l~~~y~p~~~~~l~~ 129 (243)
.|++.=+-||+|+||..+++.+...+ +. -.+.++ +-|++..+. ++ +. +.+++.
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~a~~~~-~~----l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~-~~--~v--d~v~~~- 71 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEEAKKLG-DY----LIVGVARDETVAKIKRRPILPEEQRAEVVEA-LK--YV--DEVILG- 71 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHHHHHhC-CE----EEEEECCcHHHHhcCCCCCCCHHHHHHHHHc-CC--Cc--CEEEEC-
Confidence 45666778999999999988664332 11 122232 566666654 21 22 223221
Q ss_pred CCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCC-CCCCc--ccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHH
Q 046289 130 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRA-GMGLE--SEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRT 206 (243)
Q Consensus 130 lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHA-G~g~~--~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~ 206 (243)
-|.+. .+.+ .+ +.++.+++|-|+- |.+.- ++.++.. +..+..-+ .....+|+|.||+
T Consensus 72 --------~~~~~-~~~l-~~-~~~~~vv~G~d~~fg~~~~~~~~~l~~~------g~~~~~~~---~~~~~vSSt~Ir~ 131 (136)
T cd02170 72 --------HPWSY-FKPL-EE-LKPDVIVLGDDQKNGVDEEEVYEELKKR------GKVIEVPR---KKTEGISSSDIIK 131 (136)
T ss_pred --------CCCCH-hHHH-HH-HCCCEEEECCCCCCCCcchhHHHHHHHC------CeEEEECC---CCCCCCcHHHHHH
Confidence 14443 4444 33 5568999999984 33321 1122221 22222222 2334799999999
Q ss_pred HHh
Q 046289 207 LAR 209 (243)
Q Consensus 207 ~L~ 209 (243)
++.
T Consensus 132 ~i~ 134 (136)
T cd02170 132 RIL 134 (136)
T ss_pred HHH
Confidence 885
No 40
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=93.06 E-value=0.24 Score=41.58 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=53.6
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh---------------------HHHHHHHHHHHHcCCCCCC
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH---------------------YWRMKQHDKVLEDGVLDPE 123 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~---------------------~~r~r~y~~~l~~~y~p~~ 123 (243)
+.|++.=.-+=+|+||..|++.+.+.|.+.+. ..+++. +-|.+.++. +--+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~--~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~------~Gvd 77 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGL--KSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLES------LGVD 77 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT---EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHH------TTES
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhccc--ceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHH------cCCC
Confidence 35666777788999999999998887766542 122111 555555443 2234
Q ss_pred cEEEeeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCC
Q 046289 124 TTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRA 164 (243)
Q Consensus 124 ~~~l~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHA 164 (243)
.+++-.|...+.---| |.-+.-++.+++++.+++||-|+.
T Consensus 78 ~~~~~~F~~~~~~ls~-~~Fi~~iL~~~l~~~~ivvG~Dfr 117 (157)
T PF06574_consen 78 YVIVIPFTEEFANLSP-EDFIEKILKEKLNVKHIVVGEDFR 117 (157)
T ss_dssp EEEEE-CCCHHCCS-H-HHHHHHHCCCHCTEEEEEEETT-E
T ss_pred EEEEecchHHHHcCCH-HHHHHHHHHhcCCccEEEEccCcc
Confidence 4443323333333344 677888899999999999999975
No 41
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.88 E-value=2 Score=41.38 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=66.5
Q ss_pred CccEEEeecCCCCcchHHHHHHHHHHHHHhcCC----CCC----eE--------Eeh-HHHHHHHHHHHHcCCCCCCcEE
Q 046289 64 VDAVFAFQRRKPVHNGHALLMTDTRRRLLDMGC----QNP----II--------LLH-YWRMKQHDKVLEDGVLDPETTV 126 (243)
Q Consensus 64 w~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~----~~~----~l--------ll~-~~r~r~y~~~l~~~y~p~~~~~ 126 (243)
-+..+.+=+-+|+|.||..|++.|...+ |... .++ .+ ++. +-|++-.+..++ ..+ ++.
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~-d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~--~~~--~v~ 126 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQV-DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK--YQK--NIK 126 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHC-CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC--CCC--CEE
Confidence 3466778889999999999998775442 3210 000 00 111 678888887776 444 344
Q ss_pred EeeCCC-CcCCCCchHHHHHHHHHHhc-----CCcEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccC
Q 046289 127 VSIFPS-PMHYAGPTEVQWHAKARINA-----GANFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFIS 200 (243)
Q Consensus 127 l~~lp~-~mryAGPrEal~hAiirkN~-----GcTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iS 200 (243)
+..+.. ++.-----+..|-+-+++.. ..+.+++|.+. |...|.. |. .-+.+..++ ......||
T Consensus 127 v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~-d~~~~~~-~~-------~~~~~~vd~--~r~~~~iS 195 (399)
T PRK08099 127 IHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ-DAPQYEE-HL-------GIETVLVDP--KRTFMNIS 195 (399)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHHHHH-hc-------CCceeeecc--ccccCCcC
Confidence 332222 11111123556766666444 45667777553 2222110 11 011222222 12345799
Q ss_pred HHHHHHHH
Q 046289 201 GTKMRTLA 208 (243)
Q Consensus 201 gt~iR~~L 208 (243)
||+||+-.
T Consensus 196 aT~IR~~p 203 (399)
T PRK08099 196 GTQIRENP 203 (399)
T ss_pred HHHHhhCH
Confidence 99999643
No 42
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=91.40 E-value=3.8 Score=34.94 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=82.9
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh---------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCchH
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH---------YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTE 141 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~---------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGPrE 141 (243)
=|-+|++.||.-++++|... .|... -.++.+ +-|++-.+.... -+|.=++.-. +
T Consensus 9 GSFDPiTnGHlDii~RA~~~-Fd~vi--VaV~~np~K~plFsleER~~l~~~~~~--~l~nV~V~~f------------~ 71 (159)
T COG0669 9 GSFDPITNGHLDIIKRASAL-FDEVI--VAVAINPSKKPLFSLEERVELIREATK--HLPNVEVVGF------------S 71 (159)
T ss_pred CCCCCCccchHHHHHHHHHh-ccEEE--EEEEeCCCcCCCcCHHHHHHHHHHHhc--CCCceEEEec------------c
Confidence 36799999999999987543 23211 112333 889999888877 5665544321 2
Q ss_pred HHHHHHHHHhcCCcEeEecCCCCCCCCc-ccccceeEEeCCCC-eEe--eeCCCCCccccccCHHHHHHHHhCCCCCCCC
Q 046289 142 VQWHAKARINAGANFYIVGRDRAGMGLE-SEYVKVAAYDKTQG-KMA--FFDPSRAQEFLFISGTKMRTLARNKENPPDG 217 (243)
Q Consensus 142 al~hAiirkN~GcTHfIvGrdHAG~g~~-~~~~~~~~Y~~~~~-~~~--~~~~h~~~~~~~iSgt~iR~~L~~G~~pP~~ 217 (243)
- |=+=++|..||+.+|=|--- +.+| | .+......++-. ++- +.- ...+...||+|-+|+..+-|-++-+
T Consensus 72 ~-Llvd~ak~~~a~~ivRGLR~--~sDfeY-E~qma~~N~~L~~eveTvFl~--~s~~~~~iSSs~Vreia~~ggdvs~- 144 (159)
T COG0669 72 G-LLVDYAKKLGATVLVRGLRA--VSDFEY-ELQMAHMNRKLAPEVETVFLM--PSPEYSFISSSLVREIAAFGGDVSE- 144 (159)
T ss_pred c-HHHHHHHHcCCCEEEEeccc--cchHHH-HHHHHHHHHhhcccccEEEec--CCcceehhhHHHHHHHHHhCCCchh-
Confidence 2 45667788999998876431 2222 2 111111111110 111 111 2345668999999999999998854
Q ss_pred CcChhHHHHHHHH
Q 046289 218 FMCPGGWKVLVEY 230 (243)
Q Consensus 218 f~rpeV~~vl~~~ 230 (243)
|..|+|.+-|++-
T Consensus 145 ~VP~~V~~~l~~k 157 (159)
T COG0669 145 FVPEAVARALRAK 157 (159)
T ss_pred hCCHHHHHHHHHh
Confidence 7788888877754
No 43
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=91.17 E-value=1.1 Score=38.89 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=70.0
Q ss_pred eecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEe---h--------HHHHHHHHHHHHc--C--CCCCCcEEEee--CCC
Q 046289 70 FQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILL---H--------YWRMKQHDKVLED--G--VLDPETTVVSI--FPS 132 (243)
Q Consensus 70 fQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll---~--------~~r~r~y~~~l~~--~--y~p~~~~~l~~--lp~ 132 (243)
....||...||.+|+..|+++ +|.|.+ . ..|.+-.+.=..+ | +.|.+..+++- ||.
T Consensus 5 VMNaNPFT~GH~yLiE~Aa~~-------~d~l~vFVV~eD~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPs 77 (182)
T PF08218_consen 5 VMNANPFTLGHRYLIEQAAKE-------CDWLHVFVVSEDRSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPS 77 (182)
T ss_pred EEcCCCCccHHHHHHHHHHHh-------CCEEEEEEEccccCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChh
Confidence 578999999999998765322 365532 2 6666644433320 0 13334444432 333
Q ss_pred CcCCCCchHH---------HHHHHHHHhcCCcEeEecCCCCCCC-Cccc-ccceeEEeC-CCCeEeeeCCCCCccccccC
Q 046289 133 PMHYAGPTEV---------QWHAKARINAGANFYIVGRDRAGMG-LESE-YVKVAAYDK-TQGKMAFFDPSRAQEFLFIS 200 (243)
Q Consensus 133 ~mryAGPrEa---------l~hAiirkN~GcTHfIvGrdHAG~g-~~~~-~~~~~~Y~~-~~~~~~~~~~h~~~~~~~iS 200 (243)
--.-..-..+ ||--.|++.+|.|+=-||-+.-..- .-|+ .+.++.=.. -.-...+-... .-.-||
T Consensus 78 YFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~---~g~~IS 154 (182)
T PF08218_consen 78 YFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEI---NGEPIS 154 (182)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccC---CCcEEc
Confidence 3222222222 2334588899999999999864331 1121 111110000 00001111222 234699
Q ss_pred HHHHHHHHhCCC
Q 046289 201 GTKMRTLARNKE 212 (243)
Q Consensus 201 gt~iR~~L~~G~ 212 (243)
.+++|++|++|.
T Consensus 155 AS~VR~~l~~~~ 166 (182)
T PF08218_consen 155 ASRVRKLLKEGD 166 (182)
T ss_pred HHHHHHHHHcCC
Confidence 999999999994
No 44
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=91.17 E-value=2.7 Score=39.54 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=82.6
Q ss_pred ccEEE-eecCCCCcchHHHHHHHHHHHHHhcCCCCCeEE-eh--------HHHHHHHHHHHHcCCCCCCcEEEe------
Q 046289 65 DAVFA-FQRRKPVHNGHALLMTDTRRRLLDMGCQNPIIL-LH--------YWRMKQHDKVLEDGVLDPETTVVS------ 128 (243)
Q Consensus 65 ~~Vva-fQTrnPlHraHe~l~~~~~~~~~e~~~~~~~ll-l~--------~~r~r~y~~~l~~~y~p~~~~~l~------ 128 (243)
++|.+ .-+-||+|.||.+|+++|+.. .|. ..++ ++ +.|++-.+..++ -+|. -.++.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~-~d~----~~v~v~~~~~~~f~~~~R~~~v~~~~~--~~~n-v~v~~~~~~~i 210 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQ-CDW----LHLFVVKEDASLFSYDERFALVKQGIQ--DLSN-VTVHNGSAYII 210 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHH-CCE----EEEEEEeCCCCCCCHHHHHHHHHHHhc--CCCC-EEEEecCCcee
Confidence 46766 489999999999998865332 222 1222 22 899999988887 3443 22222
Q ss_pred ---eCCCCcCCCC----chHH-----HHHHHHHHhcCCcEeEecCCCCCCC-Cccc-cccee--EEeC-CCCeEeeeCCC
Q 046289 129 ---IFPSPMHYAG----PTEV-----QWHAKARINAGANFYIVGRDRAGMG-LESE-YVKVA--AYDK-TQGKMAFFDPS 191 (243)
Q Consensus 129 ---~lp~~mryAG----PrEa-----l~hAiirkN~GcTHfIvGrdHAG~g-~~~~-~~~~~--~Y~~-~~~~~~~~~~h 191 (243)
.||.--.-.. --.+ ||--.|+..+|.||=-||-++-..- .-|+ .+..+ -..+ ..-+..+..--
T Consensus 211 s~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~t~~yn~~m~~~~~~~~~~~~I~~~~I~R~ 290 (332)
T TIGR00124 211 SRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPVTALYNQKMKYWLEEPNDAPPIEVVEIQRK 290 (332)
T ss_pred ccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHhHHHHHHHHHHhhhccCCCCCcEEEEEeee
Confidence 1222111111 1112 2223577789999999999854321 1122 22211 0000 01111111100
Q ss_pred CCccccccCHHHHHHHHhCCC-CCCCCCcChhHHHHHHHHH
Q 046289 192 RAQEFLFISGTKMRTLARNKE-NPPDGFMCPGGWKVLVEYY 231 (243)
Q Consensus 192 ~~~~~~~iSgt~iR~~L~~G~-~pP~~f~rpeV~~vl~~~~ 231 (243)
+. .-..+|+|.||++|.+|. .-=.-++.+...+.|.++.
T Consensus 291 ~~-~~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 291 LA-AGGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred cC-CCCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 11 233699999999999875 1111245566666666554
No 45
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=90.57 E-value=1.9 Score=35.38 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=62.7
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEeh------------------HHHHHHHHHHHHcCCCCCCcEE
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLH------------------YWRMKQHDKVLEDGVLDPETTV 126 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~------------------~~r~r~y~~~l~~~y~p~~~~~ 126 (243)
+.|++.=+-+-+|+||..+++.|.+.+.. -.+.+. +-|++..+++ ++. |.++
T Consensus 12 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~-----~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~---~~V--D~vi 81 (144)
T TIGR02199 12 KIVFTNGCFDILHAGHVSYLQQARALGDR-----LVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL---SSV--DYVV 81 (144)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHhCCc-----cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc---CCC--CEEE
Confidence 45777778889999999999876433211 122222 3444433332 112 3344
Q ss_pred EeeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCcccccceeEEeCCCC-eEeeeCCCCCccccccCHHHHH
Q 046289 127 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESEYVKVAAYDKTQG-KMAFFDPSRAQEFLFISGTKMR 205 (243)
Q Consensus 127 l~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~-~~~~~~~h~~~~~~~iSgt~iR 205 (243)
+ ++ .+ -|.|-+ +.+++.++++|-|+.. +.+.++.+|++.+ +...... . ..+|.|.||
T Consensus 82 ~--f~-~~---~~~~fi------~~l~~~~vv~G~d~~~-----~~~~~~~~~~~~g~~v~~~~~---~--~~iSSs~Ir 139 (144)
T TIGR02199 82 I--FD-ED---TPEELI------GELKPDILVKGGDYKV-----ETLVGAELVESYGGQVVLLPF---V--EGRSTTAII 139 (144)
T ss_pred E--CC-CC---CHHHHH------HHhCCCEEEECCCCCC-----CcchhHHHHHHcCCEEEEEeC---C--CCcCHHHHH
Confidence 3 32 11 243332 3699999999999764 1223334455443 2322211 1 159999999
Q ss_pred HHHh
Q 046289 206 TLAR 209 (243)
Q Consensus 206 ~~L~ 209 (243)
+++.
T Consensus 140 ~ri~ 143 (144)
T TIGR02199 140 EKIL 143 (144)
T ss_pred HHHh
Confidence 9875
No 46
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=90.36 E-value=0.57 Score=37.31 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=27.4
Q ss_pred HhcCCcEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHH
Q 046289 150 INAGANFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTL 207 (243)
Q Consensus 150 kN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~ 207 (243)
+.+++..+++|-|+.|-.. .++.. |. .+.....+ ...+|.|.||+.
T Consensus 79 ~~~~~~~vv~G~D~~g~~~---~l~~~--~~--~~v~~v~~-----~~~vSST~Ir~~ 124 (125)
T TIGR01518 79 IDFNIDVFVMGDDWEGKFD---FLKDE--CP--LKVVYLPR-----TEGVSTTKIKKE 124 (125)
T ss_pred HHcCCCEEEECCCccchHH---HHhhc--cC--cEEEEeCC-----CCCccHHHHHhh
Confidence 4799999999999964322 22211 11 12222221 235899999986
No 47
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=89.24 E-value=1.2 Score=37.07 Aligned_cols=120 Identities=18% Similarity=0.063 Sum_probs=63.7
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcCC----CCCe--EEeh-HHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCchHHH
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMGC----QNPI--ILLH-YWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQ 143 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~~----~~~~--lll~-~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGPrEal 143 (243)
=|-||+|.||..+++++... .|..+ .|+. -+.. +.|++-.+.+++ -+|.-.+. . + +.| +
T Consensus 8 GSFDPih~GHl~ii~~A~~~-~D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~v~v~-~-~-----~~~----l 73 (140)
T PRK13964 8 GSFDPFHKGHLNILKKALKL-FDKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKNVEVL-I-N-----ENK----L 73 (140)
T ss_pred eeeCCCCHHHHHHHHHHHHh-CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCCcEEe-c-C-----cCC----c
Confidence 46799999999998876443 23210 0100 0011 889999988887 34543322 1 1 011 1
Q ss_pred HHHHHHHhcCCcEeEecCCCCCCCCc-ccccceeEE-----eCCCCeEeeeCCCCCccccccCHHHHHHHHhCCC
Q 046289 144 WHAKARINAGANFYIVGRDRAGMGLE-SEYVKVAAY-----DKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKE 212 (243)
Q Consensus 144 ~hAiirkN~GcTHfIvGrdHAG~g~~-~~~~~~~~Y-----~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~ 212 (243)
+ .=+.+..||+-+|-|=.- ..+| |+ +. ++. .++..++- .+ ...+...||+|.+|+..+.|.
T Consensus 74 ~-v~~~~~~~a~~ivrGlR~--~~DfeyE-~~-~a~~n~~l~~~ietvf--l~-~~~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 74 T-AEIAKKLGANFLIRSARN--NIDFQYE-IV-LAAGNKSLNNDLETIL--II-PDYDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred H-HHHHHHCCCeEEEEecCC--CccHHHH-HH-HHHHHHhhcCCCeEEE--ee-cCCCCCEEeHHHHHHHHHccC
Confidence 2 124577799977777543 2222 21 11 110 11222211 11 233556799999999998774
No 48
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=88.60 E-value=2.2 Score=40.78 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=27.1
Q ss_pred ccccCHHHHHHHHhCCC-CCCCCCcChhHHHHHHHH
Q 046289 196 FLFISGTKMRTLARNKE-NPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 196 ~~~iSgt~iR~~L~~G~-~pP~~f~rpeV~~vl~~~ 230 (243)
...-|+|.+|+.+..|. +-=.||..+.+.++|.+.
T Consensus 202 ~~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~l~~~ 237 (358)
T COG1323 202 LEGASATAIRKAIFSGDLERIANMVPKETLEILSSK 237 (358)
T ss_pred ccccchHHHHHHHhcchHHHHHhhCCHHHHHHHHhc
Confidence 35679999999999987 334678888888888753
No 49
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=84.23 E-value=4.5 Score=33.50 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.4
Q ss_pred eecCCCCcchHHHHHHHHHHHH
Q 046289 70 FQRRKPVHNGHALLMTDTRRRL 91 (243)
Q Consensus 70 fQTrnPlHraHe~l~~~~~~~~ 91 (243)
-=|-||+|.||..|++.|...+
T Consensus 5 GGtFD~lH~GH~~Ll~~a~~~~ 26 (143)
T cd02164 5 GGTFDRLHDGHKILLSVAFLLA 26 (143)
T ss_pred cccCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999998765543
No 50
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=83.54 E-value=3.1 Score=35.92 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=25.7
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHH
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~ 229 (243)
.+|||.+|+.+..|+.-=+.+.++.|++++.+
T Consensus 128 e~~~t~ir~~~~~~e~~w~~~~~~~v~~~i~e 159 (172)
T COG1056 128 EYSGTAIRRKMLGGEDVWEDLVPTFVAESITE 159 (172)
T ss_pred ccccchHHHHhhcCccchhhccCchHhHHHHh
Confidence 58999999999999886666777777777654
No 51
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=79.88 E-value=2 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.4
Q ss_pred EEeecCCCCcchHHHHHHHH
Q 046289 68 FAFQRRKPVHNGHALLMTDT 87 (243)
Q Consensus 68 vafQTrnPlHraHe~l~~~~ 87 (243)
+.+=+-||+|.||.++++.+
T Consensus 3 ~~~G~Fdp~H~GH~~~l~~a 22 (66)
T TIGR00125 3 IFVGTFDPFHLGHLDLLERA 22 (66)
T ss_pred EEcCccCCCCHHHHHHHHHH
Confidence 44567899999999998865
No 52
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=79.52 E-value=19 Score=29.96 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=64.6
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeE--Eeh----------------HHHHHHHHHHHHcCCCCCCcEEE
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPII--LLH----------------YWRMKQHDKVLEDGVLDPETTVV 127 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~l--ll~----------------~~r~r~y~~~l~~~y~p~~~~~l 127 (243)
+|...=|-+|+|.||..+++.|.. .+ .++-| .++ +.|+.+.+++ + +. +.+++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~A~~----lg-~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~-~--~V--d~Vi~ 73 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQAKK----LG-PNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHC-K--WV--DEVVE 73 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHHHHH----hC-CCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhc-C--CC--CeEEE
Confidence 566667889999999999987632 21 11222 222 6677777654 3 44 44544
Q ss_pred eeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCcccccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHH
Q 046289 128 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESEYVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTL 207 (243)
Q Consensus 128 ~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~ 207 (243)
. .|.. ..+. +-+.++|+.++.|.|...-..-.+.+ ...++.+.+....-. ..+|.|+|.++
T Consensus 74 ~-~~~~-----~~~~-----~i~~~~~d~vv~G~d~~~~~~~~~~~---~~~~~~g~~~~~~~~-----~~~Stt~ii~r 134 (150)
T cd02174 74 G-APYV-----TTPE-----FLDKYKCDYVAHGDDIYLDADGEDCY---QEVKDAGRFKEVKRT-----EGVSTTDLIGR 134 (150)
T ss_pred C-CCCC-----ChHH-----HHHHhCCCEEEECCCCCCCCCchhHH---HHHHhCCEEEEeCCC-----CCCCHHHHHHH
Confidence 3 2221 1122 23478999999998875321101111 112334444433211 24899999988
Q ss_pred HhCC
Q 046289 208 ARNK 211 (243)
Q Consensus 208 L~~G 211 (243)
+.+.
T Consensus 135 I~~~ 138 (150)
T cd02174 135 ILLD 138 (150)
T ss_pred HHHh
Confidence 7643
No 53
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=78.62 E-value=8.1 Score=32.25 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=49.8
Q ss_pred cEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEE--eh----------------HHHHHHHHHHHHcCCCCCCcEEE
Q 046289 66 AVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIIL--LH----------------YWRMKQHDKVLEDGVLDPETTVV 127 (243)
Q Consensus 66 ~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~ll--l~----------------~~r~r~y~~~l~~~y~p~~~~~l 127 (243)
+|+-.=|-||+|.||..+.+.|... + +-|+ +. +.|++..+.+++ +..|..++.+
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A~~~----~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~~i 74 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKAFEL----G---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREYEI 74 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHHHHc----C---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcEEE
Confidence 4555668899999999998865332 2 2221 11 889999998887 4667777666
Q ss_pred eeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCC
Q 046289 128 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRD 162 (243)
Q Consensus 128 ~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrd 162 (243)
..+..+ -||. +..+ .+-+++|.|
T Consensus 75 ~~i~d~---~gp~-------~~~~--~d~ivvs~e 97 (153)
T PRK00777 75 VKIDDP---YGPA-------LEDD--FDAIVVSPE 97 (153)
T ss_pred Eecccc---CCCc-------cccC--CCEEEEChh
Confidence 554433 3452 1223 666888887
No 54
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=78.10 E-value=1.3 Score=34.94 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=24.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHhcCCCCC-eEEeh---------------HHHHHHHHHHHH
Q 046289 72 RRKPVHNGHALLMTDTRRRLLDMGCQNP-IILLH---------------YWRMKQHDKVLE 116 (243)
Q Consensus 72 TrnPlHraHe~l~~~~~~~~~e~~~~~~-~lll~---------------~~r~r~y~~~l~ 116 (243)
|-||+|.||..+++.|...+ +. + .+++. +-|++-.+.+..
T Consensus 5 sFdP~H~GH~~~l~~a~~~~-~~----~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLREARELF-DE----DLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHHHHHHHS-SE----SEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHHHHHHhc-cc----cccccccccccccccccccCcHHHHHHHHHHHHh
Confidence 56999999999988653321 11 1 23332 888888888887
No 55
>PLN02388 phosphopantetheine adenylyltransferase
Probab=73.76 E-value=13 Score=32.13 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCccEEEeecCCCCcchHHHHHHHHHHHHHhc---CCCCCeEE--------eh--HHHHHHHHHHHHcCCCCCCcEEEee
Q 046289 63 NVDAVFAFQRRKPVHNGHALLMTDTRRRLLDM---GCQNPIIL--------LH--YWRMKQHDKVLEDGVLDPETTVVSI 129 (243)
Q Consensus 63 gw~~VvafQTrnPlHraHe~l~~~~~~~~~e~---~~~~~~ll--------l~--~~r~r~y~~~l~~~y~p~~~~~l~~ 129 (243)
.-+.|++.=|-+.+|+||..|++.|...+.+. +|..+.++ |. +.|++..+.++. .+.++.. +.+
T Consensus 18 ~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~--~~~p~~~-~~i 94 (177)
T PLN02388 18 SYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIK--SIKPELV-VQA 94 (177)
T ss_pred cCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHH--HcCCCce-EEE
Confidence 45678889999999999999998775554321 12111111 21 889999999998 3445432 345
Q ss_pred CCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCccc---------ccceeEEeCCCCeEeeeCCCCCccccccC
Q 046289 130 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLESE---------YVKVAAYDKTQGKMAFFDPSRAQEFLFIS 200 (243)
Q Consensus 130 lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~~~---------~~~~~~Y~~~~~~~~~~~~h~~~~~~~iS 200 (243)
.|+.=.|+ |. +. +-..+.++|..+...-+..-+ |+.-++.. ++.. + .+-..||
T Consensus 95 ~~i~D~~G-pt------~~--~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~-----~v~~-~---~~~~kiS 156 (177)
T PLN02388 95 EPIIDPYG-PS------IV--DENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVD-----IVPE-E---STGNKLS 156 (177)
T ss_pred EEecCCCC-Cc------cc--CCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEE-----eEec-C---CCCCccC
Confidence 55555554 42 11 224566888887764443322 33322110 1111 1 1125799
Q ss_pred HHHHHHHHhC
Q 046289 201 GTKMRTLARN 210 (243)
Q Consensus 201 gt~iR~~L~~ 210 (243)
+|.||+++.+
T Consensus 157 ST~iR~~~~~ 166 (177)
T PLN02388 157 STTLRRLEAE 166 (177)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 56
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=69.74 E-value=6.8 Score=35.27 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=40.3
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeEEehHHHHHHHHHHHHcCCCCCCcEE
Q 046289 67 VFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPIILLHYWRMKQHDKVLEDGVLDPETTV 126 (243)
Q Consensus 67 VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~lll~~~r~r~y~~~l~~~y~p~~~~~ 126 (243)
|-.|-.+|+-=|||.+.+..|.+.+-|-|.-.| +++|.+||+ .||+++.+
T Consensus 54 V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kD--------L~~Y~~LLD--vFPKg~fv 103 (228)
T PF06239_consen 54 VDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKD--------LEVYKALLD--VFPKGKFV 103 (228)
T ss_pred HHHHHhcCCCCcChHHHHHHHHHHHHHcCCccc--------HHHHHHHHH--hCCCCCcc
Confidence 344888999999999999988777766654334 799999999 99999865
No 57
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=68.69 E-value=5.7 Score=35.19 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=26.5
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHH
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVEY 230 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~ 230 (243)
.||+|+||+++++|+.+ ..++.++|.+.|.+.
T Consensus 191 ~ISST~IR~~l~~g~~~-~~llp~~V~~YI~~~ 222 (225)
T cd09286 191 DISSTKVRRALRRGMSV-KYLLPDPVIEYIEQH 222 (225)
T ss_pred ccChHHHHHHHHcCCCc-hhcCCHHHHHHHHHc
Confidence 79999999999999754 467888888887663
No 58
>PF12450 vWF_A: von Willebrand factor ; InterPro: IPR022156 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00092 from PFAM. There are two conserved sequence motifs: STF and DVD. There are two completely conserved residues (E and N) that may be functionally important. In hemostasis, platelet adhesion to the damaged vessel wall is mediated by several proteins, including von Willebrand factor. In solution vWF becomes immobilized via its A3 domain on the fibrillar collagen of the vessel wall and acts as an intermediary between collagen and the platelet receptor glycoprotein Ibalpha (GPIbalpha), which is the only platelet receptor that does not require prior activation for bond formation.
Probab=60.49 E-value=14 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhc
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSL 234 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~ 234 (243)
.=|=+.+|++|..|..||+.-.|. +.+..|+.--
T Consensus 37 taSYs~vRr~L~~G~lPp~~aVR~---EE~iNyF~Yd 70 (99)
T PF12450_consen 37 TASYSNVRRFLNQGQLPPPDAVRI---EEMINYFDYD 70 (99)
T ss_pred cccHHHHHHHHHCCCCCCcCceeH---HHHhhcccCC
Confidence 345567999999999999999999 8888886543
No 59
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=58.47 E-value=6.9 Score=29.91 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.6
Q ss_pred CCCcchHHHHHHHH
Q 046289 74 KPVHNGHALLMTDT 87 (243)
Q Consensus 74 nPlHraHe~l~~~~ 87 (243)
+|+|.||..+++.+
T Consensus 9 dp~H~GH~~l~~~a 22 (105)
T cd02156 9 GYLHIGHAKLICRA 22 (105)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998765
No 60
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=58.37 E-value=5.8 Score=38.19 Aligned_cols=85 Identities=15% Similarity=0.309 Sum_probs=21.3
Q ss_pred EEEeec-CCCCcchHHHHHHHHHHHHHhcCCCCCeEE--eh--------------HHHHHHHHHHHHcCCCCCCcEEEee
Q 046289 67 VFAFQR-RKPVHNGHALLMTDTRRRLLDMGCQNPIIL--LH--------------YWRMKQHDKVLEDGVLDPETTVVSI 129 (243)
Q Consensus 67 VvafQT-rnPlHraHe~l~~~~~~~~~e~~~~~~~ll--l~--------------~~r~r~y~~~l~~~y~p~~~~~l~~ 129 (243)
++|--+ =||.|+||.|++..+.+. +..+.+. .. .+|-+. |+.. | -|-| +-
T Consensus 3 ~~GIIaEYNPFHnGH~y~i~~~k~~-----~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~--AL~~-G---aDLV-iE- 69 (388)
T PF05636_consen 3 VVGIIAEYNPFHNGHLYQIEQAKKI-----TGADVIIAVMSGNFVQRGEPAIIDKWTRAEM--ALKN-G---ADLV-IE- 69 (388)
T ss_dssp ----E---TT--HHHHHHHHHHH--------TSSEEEEEE--TTSBTSSB-SS-HHHHHHH--HHHH-T----SEE-EE-
T ss_pred CCCeEEeECCccHHHHHHHHHHhcc-----CCCCEEEEEECCCcccCCCeeeCCHHHHHHH--HHHc-C---CCEE-EE-
Confidence 444333 599999999998866332 1234442 11 566553 4333 4 3433 22
Q ss_pred CCCCc------CCCCchHHHHHHHHHHhcCCcEeEecCCCCCCCCc
Q 046289 130 FPSPM------HYAGPTEVQWHAKARINAGANFYIVGRDRAGMGLE 169 (243)
Q Consensus 130 lp~~m------ryAGPrEal~hAiirkN~GcTHfIvGrdHAG~g~~ 169 (243)
||... .||---=. +-..+||+++.+|-++..+..+
T Consensus 70 LP~~~a~qsA~~FA~gaV~-----lL~~lgvd~l~FGsE~~~~~~l 110 (388)
T PF05636_consen 70 LPVVYALQSAEYFARGAVS-----LLNALGVDYLSFGSESGDIEDL 110 (388)
T ss_dssp ---G------------------------------------------
T ss_pred CCCcccccccccccccccc-----cccccccccccccccccccccc
Confidence 33322 22211112 2356799999999998777654
No 61
>PRK13671 hypothetical protein; Provisional
Probab=57.45 E-value=9 Score=35.75 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=21.1
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHH
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVE 229 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~ 229 (243)
.-|+|.||+.|.+|..+-. ++.+...+++.+
T Consensus 195 ~aSAtaIR~~l~~~~~~~~-~~p~~~~~~l~~ 225 (298)
T PRK13671 195 YASATYLRKMIFENKDISK-YSPMKFKKPPKS 225 (298)
T ss_pred cccHHHHHHHHhccchHHH-hCCHHHHHHHHH
Confidence 5899999999988744433 455555566643
No 62
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=53.52 E-value=1.6e+02 Score=28.04 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCccEEE-eecCCCCcchHHHHHHHHHHHHHhcCCCCCeE--E-eh--------HHHHHHHHHHHHcCCCCC------C
Q 046289 62 ANVDAVFA-FQRRKPVHNGHALLMTDTRRRLLDMGCQNPII--L-LH--------YWRMKQHDKVLEDGVLDP------E 123 (243)
Q Consensus 62 ~gw~~Vva-fQTrnPlHraHe~l~~~~~~~~~e~~~~~~~l--l-l~--------~~r~r~y~~~l~~~y~p~------~ 123 (243)
.--++|-+ ...+||.-.||.||+.+|+++ ||-| + +. +.|++-.+.=+. .+|. +
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaq-------cDwlHLFvV~eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~Hsgs 212 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQ-------CDWLHLFVVKEDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGS 212 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhh-------CCEEEEEEEecccccCCHHHHHHHHHHhhc--cCCceEEecCC
Confidence 34567888 799999999999998765332 3544 2 22 777775554443 3433 1
Q ss_pred cEEEe--eCCCCcCCCCchHH-----------HHHHHHHHhcCCcEeEecCCCCCC-CCccc-ccceeEEeCCC----Ce
Q 046289 124 TTVVS--IFPSPMHYAGPTEV-----------QWHAKARINAGANFYIVGRDRAGM-GLESE-YVKVAAYDKTQ----GK 184 (243)
Q Consensus 124 ~~~l~--~lp~~mryAGPrEa-----------l~hAiirkN~GcTHfIvGrdHAG~-g~~~~-~~~~~~Y~~~~----~~ 184 (243)
..+++ .||. -|----++ ||.--+++.+|.||=-||-+.--. ..-|+ .+.++.=.+.. -+
T Consensus 213 dYiISrATFP~--YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~ 290 (352)
T COG3053 213 DYIISRATFPA--YFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIE 290 (352)
T ss_pred CeEEEecccch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceE
Confidence 12222 2332 22222222 444457789999999999875322 11121 11111111110 00
Q ss_pred EeeeCCCCCccccccCHHHHHHHHhCCC
Q 046289 185 MAFFDPSRAQEFLFISGTKMRTLARNKE 212 (243)
Q Consensus 185 ~~~~~~h~~~~~~~iSgt~iR~~L~~G~ 212 (243)
.+-. |-....-.-||.+.+|.+|.++.
T Consensus 291 vvei-~Rk~~~~~~ISAS~VR~~l~~~~ 317 (352)
T COG3053 291 VVEI-ERKKYQEMPISASRVRQLLAKND 317 (352)
T ss_pred EEEe-ehhhhcCCcccHHHHHHHHHhCC
Confidence 0100 11111233699999999999874
No 63
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=49.71 E-value=14 Score=32.79 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=36.3
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcC--C-CCCeEEe------h-------HHHHHHHHHHHHcCCCCCCcEEEeeCCCCc
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMG--C-QNPIILL------H-------YWRMKQHDKVLEDGVLDPETTVVSIFPSPM 134 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~--~-~~~~lll------~-------~~r~r~y~~~l~~~y~p~~~~~l~~lp~~m 134 (243)
=|-||+|.||..+.+.+.+.. +.- + .-+.+++ + +.|++-.+..+++ .| .+.++ ++..
T Consensus 7 GSFdPiH~gHl~ia~~a~~~l-~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~--~~~v~--~~E~ 79 (225)
T cd09286 7 GSFNPITNMHLRMFELARDHL-HETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SD--WIRVD--DWES 79 (225)
T ss_pred cCcCCCcHHHHHHHHHHHHHH-HhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CC--CEEEE--ehhc
Confidence 468999999999987654432 221 0 0001111 1 7799888877772 33 34444 4555
Q ss_pred CCCCchH
Q 046289 135 HYAGPTE 141 (243)
Q Consensus 135 ryAGPrE 141 (243)
.-.||.-
T Consensus 80 ~~~~~sy 86 (225)
T cd09286 80 LQPEWMR 86 (225)
T ss_pred cCCcccc
Confidence 5566633
No 64
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=43.69 E-value=8.6 Score=30.65 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=25.1
Q ss_pred ccceeEEeCCCCeEeee-------CCC-CCccccccCHHHHH
Q 046289 172 YVKVAAYDKTQGKMAFF-------DPS-RAQEFLFISGTKMR 205 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~~-------~~h-~~~~~~~iSgt~iR 205 (243)
..+..++|..|++..+. ||. +..+..-++|.+++
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 107 (114)
T PRK03681 66 EQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLRIVADDGLQ 107 (114)
T ss_pred eeCcEEEcccCCCeeecCCccCCcCcCcCCCCcEEccCCeEE
Confidence 44568999999887641 998 77777778887653
No 65
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=40.49 E-value=21 Score=33.30 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=28.9
Q ss_pred eecCCCCcchHHHHHHHHHHHHHhcCCC--C-------CeEEeh-HHHHHHHHHHHH
Q 046289 70 FQRRKPVHNGHALLMTDTRRRLLDMGCQ--N-------PIILLH-YWRMKQHDKVLE 116 (243)
Q Consensus 70 fQTrnPlHraHe~l~~~~~~~~~e~~~~--~-------~~lll~-~~r~r~y~~~l~ 116 (243)
.=|-||+|.||..+++.|... .|.... + ..-.+. +.|++-.+..++
T Consensus 7 ~GsFdP~H~GHl~ii~~a~~~-~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 7 FGKFYPLHTGHIYLIYEAFSK-VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred eeccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 357899999999999876443 332100 0 000111 789999988877
No 66
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=38.46 E-value=12 Score=29.89 Aligned_cols=34 Identities=9% Similarity=-0.032 Sum_probs=24.8
Q ss_pred ccceeEEeCCCCeEeee------CCC-CCccccccCHHHHH
Q 046289 172 YVKVAAYDKTQGKMAFF------DPS-RAQEFLFISGTKMR 205 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~~------~~h-~~~~~~~iSgt~iR 205 (243)
..+..++|+.|+...+. ||. +.....-++|.+++
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 106 (115)
T TIGR00100 66 DEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQVRAGKELN 106 (115)
T ss_pred eeCcEEEcccCCCEEecCCcCccCcCCcCCCcEEecCCeEE
Confidence 34567999999877652 998 76666677887653
No 67
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=37.11 E-value=1.3e+02 Score=28.66 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCccEEEeecCCCCcchHHHHHHHHHHHHHhcCCCCCeE--Eeh----------------HHHHHHHHHHHHcCCCCCCc
Q 046289 63 NVDAVFAFQRRKPVHNGHALLMTDTRRRLLDMGCQNPII--LLH----------------YWRMKQHDKVLEDGVLDPET 124 (243)
Q Consensus 63 gw~~VvafQTrnPlHraHe~l~~~~~~~~~e~~~~~~~l--ll~----------------~~r~r~y~~~l~~~y~p~~~ 124 (243)
+-.+|++-=+-+-+|.||..++++|.+ .+ +.| .+| +-|++..+++ ++ -|.
T Consensus 10 ~~~~v~~~G~FD~vH~GH~~~L~qAk~----~g---~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~---~~--VD~ 77 (353)
T PTZ00308 10 GTIRVWVDGCFDMLHFGHANALRQARA----LG---DELFVGCHSDEEIMRNKGPPVMHQEERYEALRAC---KW--VDE 77 (353)
T ss_pred CcEEEEEEeecccCCHHHHHHHHHHHH----hC---CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhc---CC--ccE
Confidence 335677778889999999999987632 32 222 344 3344433321 11 244
Q ss_pred EEEeeCCCCcCCCCchHHHHHHHHHHhcCCcEeEecCCCC
Q 046289 125 TVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDRA 164 (243)
Q Consensus 125 ~~l~~lp~~mryAGPrEal~hAiirkN~GcTHfIvGrdHA 164 (243)
+++. +|..... + .| +.++|.++++|-|..
T Consensus 78 Vv~~-~p~~~~~-----~----fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 78 VVEG-YPYTTRL-----E----DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred EEEC-CCCCchH-----H----HH-HHhCCCEEEECCCCC
Confidence 4442 4543211 1 23 779999999999975
No 68
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.94 E-value=14 Score=29.44 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=24.6
Q ss_pred ccceeEEeCCCCeEee------eCCC-CCccccccCHHHHH
Q 046289 172 YVKVAAYDKTQGKMAF------FDPS-RAQEFLFISGTKMR 205 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~------~~~h-~~~~~~~iSgt~iR 205 (243)
..+..++|..|+...+ .||. +.....-++|.+++
T Consensus 66 ~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~El~ 106 (113)
T PRK12380 66 YKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLRVDTGDSLI 106 (113)
T ss_pred eeCcEEEcccCCCEEecCCcCccCcCCCCCCcEEccCCeEE
Confidence 3456799999987553 2998 77677778887653
No 69
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=35.87 E-value=48 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcC-hhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARNKENPPDGFMC-PGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~r-peV~~vl~~~~~~~~~~~~~~~ 242 (243)
.||.++++.+|.. .+|++++- .++ .+-.+.++.+++|+|
T Consensus 25 ~i~~~ELk~ll~~--elg~~ls~~~~v----~~mi~~~D~d~DG~I 64 (89)
T cd05022 25 SLTASEFQELLTQ--QLPHLLKDVEGL----EEKMKNLDVNQDSKL 64 (89)
T ss_pred eECHHHHHHHHHH--HhhhhccCHHHH----HHHHHHhCCCCCCCC
Confidence 6999999999985 25666776 444 444466788888876
No 70
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=35.30 E-value=38 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.1
Q ss_pred ccEEEeecCCCCcchHHHHHHHHHH
Q 046289 65 DAVFAFQRRKPVHNGHALLMTDTRR 89 (243)
Q Consensus 65 ~~VvafQTrnPlHraHe~l~~~~~~ 89 (243)
+.|++.=+-+.+|+||..+++.|..
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~ 29 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARS 29 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHH
Confidence 3567777889999999999987643
No 71
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=35.17 E-value=1.9e+02 Score=26.46 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHHHhcCCCCCeEEehHHHHHHHHHHHHcCCCCCCcEEEeeCCCCcCCCCchHHHHHHHHHHhcCCcEe
Q 046289 78 NGHALLMTDTRRRLLDMGCQNPIILLHYWRMKQHDKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFY 157 (243)
Q Consensus 78 raHe~l~~~~~~~~~e~~~~~~~lll~~~r~r~y~~~l~~~y~p~~~~~l~~lp~~mryAGPrEal~hAiirkN~GcTHf 157 (243)
|--.+.+......+.+.+++...++|..+-..+.+.+++.++| +-|.+-|. -.+|-|| +=|=+|||...|
T Consensus 137 ~nK~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~----vGlTvqPg---Klt~~eA---veIV~ey~~~r~ 206 (254)
T COG1099 137 RNKKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFY----VGLTVQPG---KLTVEEA---VEIVREYGAERI 206 (254)
T ss_pred CcchhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHhccce----EEEEecCC---cCCHHHH---HHHHHHhCcceE
Confidence 3344555545455555566555666666667778888887777 44566663 3467777 457789999999
Q ss_pred EecCC
Q 046289 158 IVGRD 162 (243)
Q Consensus 158 IvGrd 162 (243)
|+--|
T Consensus 207 ilnSD 211 (254)
T COG1099 207 ILNSD 211 (254)
T ss_pred EEecc
Confidence 99877
No 72
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=33.75 E-value=38 Score=22.15 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=23.8
Q ss_pred cccccCHHHHHHHHhCCCCCCCCCcChhH
Q 046289 195 EFLFISGTKMRTLARNKENPPDGFMCPGG 223 (243)
Q Consensus 195 ~~~~iSgt~iR~~L~~G~~pP~~f~rpeV 223 (243)
..=-+|-.+|++++++|+.-|+-+...+-
T Consensus 10 ~~GP~s~~el~~l~~~g~i~~~tlvw~~g 38 (45)
T PF14237_consen 10 QQGPFSLEELRQLISSGEIDPDTLVWKEG 38 (45)
T ss_pred EECCcCHHHHHHHHHcCCCCCCCeEeCCC
Confidence 33358999999999999999998877643
No 73
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=33.73 E-value=59 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=25.0
Q ss_pred ccCHHHHHHHHhC------CCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARN------KENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~------G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.|+.++++.+|++ |..+ +..+|-+++ +....+++|+|
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~----~~~~v~~~i----~~~D~n~dG~v 68 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIK----EQEVVDKVM----ETLDSDGDGEC 68 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCC----CHHHHHHHH----HHhCCCCCCcC
Confidence 4999999999997 4432 334444444 45577888876
No 74
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=33.64 E-value=1.1e+02 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=16.3
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhcC
Q 046289 71 QRRKPVHNGHALLMTDTRRRLLDMG 95 (243)
Q Consensus 71 QTrnPlHraHe~l~~~~~~~~~e~~ 95 (243)
=|-+++|.||..|+.. |.+.|
T Consensus 12 GTFd~LH~GHk~LL~~----A~~~G 32 (158)
T COG1019 12 GTFDRLHDGHKKLLEV----AFEIG 32 (158)
T ss_pred ccchhhhhhHHHHHHH----HHHhC
Confidence 5778999999999864 35555
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=32.10 E-value=35 Score=26.40 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.+|-.+++++|.. ++|.++..+.=-+.|-+..+.++.++.|+|
T Consensus 23 tLsk~Elk~Ll~~--Elp~~l~~~~d~~~vd~im~~LD~n~Dg~v 65 (91)
T cd05024 23 YLNRDDLQKLMEK--EFSEFLKNQNDPMAVDKIMKDLDDCRDGKV 65 (91)
T ss_pred cCCHHHHHHHHHH--HhHHHHcCCCCHHHHHHHHHHhCCCCCCcC
Confidence 6999999999986 456777754434778888889999999987
No 76
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=26.25 E-value=64 Score=21.86 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHhCCCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARNKENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.||-+++++.++.=..... ..++-+.+....+..+.+++|.+
T Consensus 16 ~i~~~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~D~d~dG~i 57 (66)
T PF13499_consen 16 YISKEELRRALKHLGRDMS---DEESDEMIDQIFREFDTDGDGRI 57 (66)
T ss_dssp EEEHHHHHHHHHHTTSHST---HHHHHHHHHHHHHHHTTTSSSSE
T ss_pred CCCHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhCCCCcCCC
Confidence 5888999988876443332 45555677777888899998875
No 77
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.96 E-value=22 Score=28.17 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=20.0
Q ss_pred ccceeEEeCCCCeEeee------CCC-CCccccccCHHHH
Q 046289 172 YVKVAAYDKTQGKMAFF------DPS-RAQEFLFISGTKM 204 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~~------~~h-~~~~~~~iSgt~i 204 (243)
..+..++|..|+.--+. ||. +.....-+||.++
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~el 105 (113)
T PF01155_consen 66 EVPARARCRDCGHEFEPDEFDFSCPRCGSPDVEIISGREL 105 (113)
T ss_dssp EE--EEEETTTS-EEECHHCCHH-SSSSSS-EEEEESS-E
T ss_pred ecCCcEECCCCCCEEecCCCCCCCcCCcCCCcEEccCCeE
Confidence 34567999999986652 998 6666667888765
No 78
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=25.84 E-value=92 Score=23.36 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHh----CCCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLAR----NKENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~----~G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.||.+++|++|+ .|..+ +..||-+++. .++.+++|++
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~----t~~ev~~m~~----~~D~d~dG~I 68 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKL----QDAEIAKLME----DLDRNKDQEV 68 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCC----CHHHHHHHHH----HhcCCCCCCC
Confidence 699999999996 36553 4456655544 4577787776
No 79
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=77 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=26.6
Q ss_pred ccceeEEeCCCCeEeeeCCCCCccccccCHHHHHHHHhCCCCC
Q 046289 172 YVKVAAYDKTQGKMAFFDPSRAQEFLFISGTKMRTLARNKENP 214 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~~~~h~~~~~~~iSgt~iR~~L~~G~~p 214 (243)
..+.|.|.+..+.+..-||-+. +..||-.. |++|+..
T Consensus 8 eiedftf~~e~~~ftyPCPCGD--RFeIsLeD----l~~GE~V 44 (67)
T COG5216 8 EIEDFTFSREEKTFTYPCPCGD--RFEISLED----LRNGEVV 44 (67)
T ss_pred EeeeeEEcCCCceEEecCCCCC--EeEEEHHH----hhCCceE
Confidence 4567999999999988899654 44566543 5677754
No 80
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=24.97 E-value=17 Score=34.97 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEEEeccccCCCHHHHHHhhhCC
Q 046289 4 LFDVYFSIEIYKQPKEERIARTWRT 28 (243)
Q Consensus 4 ~lAil~V~ei~~~dk~~~a~~vfGT 28 (243)
++|.|+|+|||+ |+++.++.||..
T Consensus 109 i~asmTvEEIyK-drk~F~k~Vfev 132 (428)
T KOG2668|consen 109 ILASMTVEEIYK-DRKEFKKEVFEV 132 (428)
T ss_pred HHHhccHHHHHh-hHHHHHHHHHHH
Confidence 578999999998 888899999973
No 81
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=24.45 E-value=75 Score=23.90 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=24.3
Q ss_pred ccCHHHHHHHHhC--CCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARN--KENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~--G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.||-++++++|+. |......-...+|.+ ..+.++.+++|++
T Consensus 28 ~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~----i~~elD~n~dG~I 70 (93)
T cd05026 28 KLSKGELKELLQRELTDFLSSQKDPMLVDK----IMNDLDSNKDNEV 70 (93)
T ss_pred EECHHHHHHHHHHHhHHhcccccCHHHHHH----HHHHhCCCCCCCC
Confidence 4999999999965 222111112334444 4455577888775
No 82
>PF11756 YgbA_NO: Nitrous oxide-stimulated promoter; InterPro: IPR020483 This entry contains proteins with no known function.
Probab=24.05 E-value=37 Score=27.33 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.4
Q ss_pred CcCCCCchHHHHHHHHH
Q 046289 133 PMHYAGPTEVQWHAKAR 149 (243)
Q Consensus 133 ~mryAGPrEal~hAiir 149 (243)
-|||+|||=-+.|-|.+
T Consensus 77 VMrysGpRMl~~hPi~a 93 (112)
T PF11756_consen 77 VMRYSGPRMLFYHPIMA 93 (112)
T ss_pred HHHHcCchHHHhhHHHH
Confidence 48999999877777755
No 83
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.80 E-value=18 Score=28.95 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=21.9
Q ss_pred ccceeEEeCCCCeEee------e-CCC-CCccccccCHHHH
Q 046289 172 YVKVAAYDKTQGKMAF------F-DPS-RAQEFLFISGTKM 204 (243)
Q Consensus 172 ~~~~~~Y~~~~~~~~~------~-~~h-~~~~~~~iSgt~i 204 (243)
..+..++|..|+...+ . ||. +.....-++|.++
T Consensus 67 ~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~~G~El 107 (117)
T PRK00564 67 DEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEM 107 (117)
T ss_pred ecCCEEEhhhCCCccccCCccCCcCcCCCCCceEEecCCEE
Confidence 3445789999986543 2 888 6666666777654
No 84
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=23.57 E-value=98 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=25.4
Q ss_pred ccCHHHHHHHHhC--CCCCCCCCcChhHHHHHHHHHhhcCCCCCCCC
Q 046289 198 FISGTKMRTLARN--KENPPDGFMCPGGWKVLVEYYDSLAPADNGKV 242 (243)
Q Consensus 198 ~iSgt~iR~~L~~--G~~pP~~f~rpeV~~vl~~~~~~~~~~~~~~~ 242 (243)
.||.++++.+|+. |...+.-.+..++.+++.+ ++.+++|.+
T Consensus 27 ~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~----~D~d~~G~I 69 (92)
T cd05025 27 KLSKKELKDLLQTELSDFLDAQKDADAVDKIMKE----LDENGDGEV 69 (92)
T ss_pred eECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH----HCCCCCCcC
Confidence 4999999999964 5433333344555555544 466777665
No 85
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=22.39 E-value=52 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.026 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCc
Q 046289 142 VQWHAKARINAGAN 155 (243)
Q Consensus 142 al~hAiirkN~GcT 155 (243)
-+++||+||-||+.
T Consensus 36 ki~~ai~RkTyG~n 49 (100)
T PF04492_consen 36 KILLAIIRKTYGWN 49 (100)
T ss_pred HHHHHHHHHccCCC
Confidence 68999999999997
No 86
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=22.33 E-value=3.3e+02 Score=25.42 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCcCCCCchHHHHH-HHHHHhcCCcEeEecCCCCCCCCc
Q 046289 131 PSPMHYAGPTEVQWH-AKARINAGANFYIVGRDRAGMGLE 169 (243)
Q Consensus 131 p~~mryAGPrEal~h-AiirkN~GcTHfIvGrdHAG~g~~ 169 (243)
..-++|+||.-|--. ++.. +-==|-+|+|.||-|.|.+
T Consensus 53 HAGy~ySG~taa~~y~~l~~-~~~~~vVIlGPnHtg~g~~ 91 (279)
T COG1355 53 HAGYRYSGPTAAHVYSALDE-GEPDTVVILGPNHTGLGSP 91 (279)
T ss_pred CCCcEecchhHHHHHHHhhc-CCCCEEEEECCCCCCCCCc
Confidence 577999999887544 4444 3345778999999999985
Done!