BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046290
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 94 AFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHI 153
+ YA+ R+S + LL + C + V E+ + GDPKD+ICQ +++
Sbjct: 66 SIYASPEDFRDXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRP 125
Query: 154 DLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
D LVVGSRGLG+ ++ F+G+VS +C HA CP+ +K
Sbjct: 126 DFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIK 162
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 16/123 (13%)
Query: 69 GGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALL-SRALQMCKDK 127
G L +VH EP ++ F+ E++R+ E L +RAL
Sbjct: 30 GARLIVVHAYEPVPDYL------GEPFFE-----EALRRRLERAEGVLEEARALT----G 74
Query: 128 MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187
+ K ++L+LEG P + I Q+A DL+V+G+RGLG + FLGS S A CP++
Sbjct: 75 VPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVL 134
Query: 188 IVK 190
+V+
Sbjct: 135 LVR 137
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 102 VESVRKSQEENSAALLSRALQMCKDKM-----------VKAESLVLEGDPKDMICQSAEQ 150
V + KS EE L ++ + K+KM K + +++ G P + I + AE
Sbjct: 59 VAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAED 118
Query: 151 MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
+D++++GS G +K LGSV++ + P+++VK
Sbjct: 119 EGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 40/175 (22%)
Query: 26 TDGKKKMKVMVAIDESAESFNALKWALDN--LYGIVGFTPEAGGGGGILTIVHVQEPFQR 83
+ G + ++V ID+S + A++WA + L I LT+VH
Sbjct: 2 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIP------------LTLVH------- 42
Query: 84 FVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDP--- 140
A+S A + + V + Q+++ L+ AL++ + ++A G P
Sbjct: 43 ----AVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRA------GPPTVH 92
Query: 141 KDMICQSAEQMHID------LLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189
+++ +A +D L VVG G G+ LGSVS HA CP++I+
Sbjct: 93 SEIVPAAAVPTLVDXSKDAVLXVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 134 LVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
+V+ P + Q +E+ L+VVGSRG G +GSV + A A P+I+ +
Sbjct: 239 VVVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVAR 293
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 131 AESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
A ++ G+P++ I + AEQ ++DL+VVGS G + LGS ++ H+A C ++ V+
Sbjct: 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 131 AESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
A ++ G+P++ I + AEQ ++DL+VVGS G + LGS ++ H+A C ++ V+
Sbjct: 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 130 KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189
K + V G P I + A + DL+V+G++G K LGSV+ A A CP+++V
Sbjct: 88 KVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 138 GDPKDMICQSAEQM-HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
G PK I A+Q IDL+V+G+ G R +GS + Y HA C +I+++
Sbjct: 93 GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 40/172 (23%)
Query: 29 KKKMKVMVAIDESAESFNALKWALDN--LYGIVGFTPEAGGGGGILTIVHVQEPFQRFVL 86
+ ++V ID+S + A++WA + L I LT+VH
Sbjct: 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIP------------LTLVH---------- 54
Query: 87 PALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDP---KDM 143
A+S A + + V + Q+++ L+ AL++ + ++A G P ++
Sbjct: 55 -AVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRA------GPPTVHSEI 107
Query: 144 ICQSAEQMHID------LLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189
+ +A +D L+VVG G G+ LGSVS HA CP++I+
Sbjct: 108 VPAAAVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 129 VKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188
V +V+ P + Q +E+ L+VVGSRG G +GSV + A A P+I+
Sbjct: 246 VAITRVVVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIV 303
Query: 189 VK 190
+
Sbjct: 304 AR 305
>pdb|3IDF|A Chain A, The Crystal Structure Of A Usp-Like Protein From Wolinella
Succinogenes To 2.0a
pdb|3IDF|B Chain B, The Crystal Structure Of A Usp-Like Protein From Wolinella
Succinogenes To 2.0a
Length = 138
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 22/158 (13%)
Query: 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTS 92
K++ AID++ A ++ LD ++G LT++HV+ F+L +
Sbjct: 3 KLLFAIDDTEACERAAQYILD-MFG--------KDADCTLTLIHVK---PEFMLYGEAVL 50
Query: 93 SAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMH 152
+A+ + + +EE + L + +K + ++ EG+P +M+ + A+ +
Sbjct: 51 AAY-------DEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAKDYN 103
Query: 153 IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
LL++GS + + F D+ A P++IVK
Sbjct: 104 --LLIIGSSENSFLNKIFASHQDDFI-QKAPIPVLIVK 138
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 86 LPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESL--VLEGDPKDM 143
L LST S ++ + EE +L Q + +KAE + GDP
Sbjct: 61 LTKLSTVSGGIDIDHYIDEXSEKAEE----VLPEVAQKIEAAGIKAEVIKPFPAGDPVVE 116
Query: 144 ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
I +++E + GSRG K K+ LGSVS+ H + P+ I K
Sbjct: 117 IIKASENY--SFIAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
G P I E+++ + GSRG G + LGS S+ + P+ + K
Sbjct: 237 GTPHKAILAKREEINATTIFXGSRGAGSVXTXILGSTSESVIRRSPVPVFVCK 289
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 135 VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191
V EG P+ +I Q E+++ ++V+G G + AFLG+ ++ H C ++ +KP
Sbjct: 249 VKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 93 SAFYATSSM-VESVR-KSQEENSAALLSRALQMCKDKMVK-AESLVLEGDPKDMICQSAE 149
S FY + + ++ ++ K +EE S L +A ++ + K +++ G P D I + AE
Sbjct: 55 SFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAE 114
Query: 150 QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQH 196
+ ++ L+++ SRG + FLGS P++I+K E
Sbjct: 115 EENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDENE 161
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189
G P D + A++ DLLVVG+ GL I LGSV + A ++IV
Sbjct: 105 GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 135 VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
V EG PKD I A+ + DL+++ S I LGS + HA C +++V+
Sbjct: 90 VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 135 VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
V EG PKD I A+ + DL+++ S I LGS + HA C +++V+
Sbjct: 89 VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|3SUJ|A Chain A, Crystal Structure Of Cerato-Platanin 1 From M. Perniciosa
(Mpcp1)
Length = 127
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 31 KMKVMVAIDESAESFNALKWALDNL 55
K MVAID SAE F A K A+D+L
Sbjct: 76 KSIYMVAIDRSAEGFTASKQAMDDL 100
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 79 EPFQRFVLPALSTSSAFY 96
+PF RF LP LS +SA+Y
Sbjct: 174 QPFPRFSLPFLSIASAYY 191
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 79 EPFQRFVLPALSTSSAFY 96
+PF RF LP LS +SA+Y
Sbjct: 174 QPFPRFSLPFLSIASAYY 191
>pdb|2B4L|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Glycine Betaine
pdb|2B4M|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|2B4M|B Chain B, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|3CHG|D Chain D, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|A Chain A, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|B Chain B, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|C Chain C, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
Length = 268
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 81 FQRFVLPALSTSSAFYATSSMVESVRK---SQEENSAALLSRALQMCKDKMVKAESLVLE 137
F R+ L L Y ++ + ++ + S+E+ +AA L + +D+M + V E
Sbjct: 74 FSRYKLKYLDDPKQSYGSAEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVEE 133
Query: 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIK 167
G+ + H D + ++G+ K+K
Sbjct: 134 GEKPAKVAAEYVNKHKDQIAEWTKGVQKVK 163
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 43 ESFNALKWALDN------LYGIVGFTPEAGGGGGILTIV-----HVQEPFQRFVLPALS 90
+SF+ALKW +N YGI AGG +T + +++ +Q + PA+S
Sbjct: 143 DSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVS 201
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 43 ESFNALKWALDNL------YGIVGFTPEAGGGGGILTIV-----HVQEPFQRFVLPALS 90
+SF+ALKW +N YGI AGG +T + +++ +Q + PA+S
Sbjct: 143 DSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVS 201
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 43 ESFNALKWALDNL------YGIVGFTPEAGGGGGILTIV-----HVQEPFQRFVLPALS 90
+SF+ALKW +N YGI AGG +T + +++ +Q + PA+S
Sbjct: 143 DSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVS 201
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 43 ESFNALKWALDNL------YGIVGFTPEAGGGGGILTIV-----HVQEPFQRFVLPALS 90
+SF+ALKW +N YGI AGG +T + +++ +Q + PA+S
Sbjct: 143 DSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVS 201
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 100 SMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGD 139
+ VE V K++EE A L R L + +++ K L+G+
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGE 392
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 100 SMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGD 139
+ VE V K++EE A L R L + +++ K L+G+
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGE 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,589,229
Number of Sequences: 62578
Number of extensions: 196752
Number of successful extensions: 632
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 36
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)