Query 046290
Match_columns 197
No_of_seqs 135 out of 1817
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 8.7E-26 1.9E-30 163.9 15.9 140 30-190 1-142 (142)
2 PRK15005 universal stress prot 99.9 1.5E-25 3.3E-30 162.6 15.4 142 30-190 1-144 (144)
3 cd01989 STK_N The N-terminal d 99.9 5.3E-25 1.1E-29 160.2 16.3 141 33-191 1-145 (146)
4 PRK09982 universal stress prot 99.9 1.9E-24 4.1E-29 157.0 14.3 139 30-192 2-140 (142)
5 PRK15118 universal stress glob 99.9 4.9E-23 1.1E-27 149.6 15.3 138 30-192 2-140 (144)
6 PRK11175 universal stress prot 99.9 2.6E-23 5.6E-28 168.6 14.6 161 5-192 132-301 (305)
7 PRK10116 universal stress prot 99.9 1.2E-22 2.7E-27 147.0 15.6 140 29-193 1-141 (142)
8 PF00582 Usp: Universal stress 99.9 5E-23 1.1E-27 146.8 12.4 140 30-190 1-140 (140)
9 cd01988 Na_H_Antiporter_C The 99.9 3.8E-22 8.1E-27 142.3 14.5 131 33-190 1-132 (132)
10 PRK11175 universal stress prot 99.9 5.3E-22 1.2E-26 160.9 15.3 146 29-192 1-147 (305)
11 cd01987 USP_OKCHK USP domain i 99.9 1.1E-21 2.5E-26 138.8 12.1 123 33-190 1-124 (124)
12 cd00293 USP_Like Usp: Universa 99.8 4E-19 8.6E-24 125.3 15.0 130 33-189 1-130 (130)
13 COG0589 UspA Universal stress 99.8 1.2E-17 2.5E-22 121.5 17.1 148 29-192 3-153 (154)
14 PRK12652 putative monovalent c 99.6 4.3E-14 9.3E-19 116.3 15.0 132 29-190 3-150 (357)
15 PRK10490 sensor protein KdpD; 99.4 5.7E-12 1.2E-16 115.6 13.3 125 31-192 250-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.3 2.9E-11 6.2E-16 106.4 13.1 129 31-194 248-377 (890)
17 cd01984 AANH_like Adenine nucl 98.4 1.3E-06 2.8E-11 57.5 7.2 84 34-188 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.6 0.00084 1.8E-08 61.8 12.1 172 6-190 602-793 (832)
19 PLN03159 cation/H(+) antiporte 97.4 0.0023 4.9E-08 59.0 11.3 145 30-190 457-614 (832)
20 TIGR02432 lysidine_TilS_N tRNA 97.1 0.01 2.2E-07 44.7 11.0 94 33-164 1-111 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.6 0.034 7.5E-07 41.7 9.7 92 33-162 1-106 (182)
22 cd01992 PP-ATPase N-terminal d 96.4 0.065 1.4E-06 40.0 10.5 94 33-164 1-108 (185)
23 PRK12342 hypothetical protein; 96.0 0.072 1.6E-06 42.3 9.2 103 40-186 33-139 (254)
24 PRK03359 putative electron tra 95.8 0.097 2.1E-06 41.6 9.1 103 40-185 34-141 (256)
25 COG2086 FixA Electron transfer 95.1 0.19 4.2E-06 40.0 8.6 99 40-187 35-142 (260)
26 COG0037 MesJ tRNA(Ile)-lysidin 94.9 0.36 7.7E-06 38.9 10.0 103 32-174 22-146 (298)
27 cd01993 Alpha_ANH_like_II This 94.8 0.51 1.1E-05 35.0 9.9 92 33-162 1-116 (185)
28 PF01012 ETF: Electron transfe 94.3 0.6 1.3E-05 34.2 9.1 86 34-162 2-100 (164)
29 TIGR00591 phr2 photolyase PhrI 93.2 2.1 4.5E-05 37.0 11.7 103 32-167 23-127 (454)
30 PRK07313 phosphopantothenoylcy 93.1 1.1 2.4E-05 33.7 8.8 36 31-77 1-36 (182)
31 PF00875 DNA_photolyase: DNA p 93.0 2 4.3E-05 31.4 10.1 115 42-191 11-125 (165)
32 PRK14665 mnmA tRNA-specific 2- 92.8 2.7 5.8E-05 35.3 11.4 35 31-79 5-39 (360)
33 PRK10696 tRNA 2-thiocytidine b 92.7 2.5 5.5E-05 33.5 10.9 92 31-163 29-142 (258)
34 TIGR00268 conserved hypothetic 92.6 1.8 4E-05 34.2 9.9 88 31-162 12-117 (252)
35 TIGR01162 purE phosphoribosyla 92.4 1.4 3.1E-05 32.2 8.1 70 116-193 13-86 (156)
36 PF02441 Flavoprotein: Flavopr 92.3 0.56 1.2E-05 33.0 6.0 110 32-192 1-119 (129)
37 PRK13820 argininosuccinate syn 92.3 3.1 6.7E-05 35.3 11.2 37 31-80 2-39 (394)
38 COG0041 PurE Phosphoribosylcar 92.0 1.3 2.8E-05 32.2 7.4 69 116-192 17-89 (162)
39 PRK10660 tilS tRNA(Ile)-lysidi 91.4 2.6 5.6E-05 36.3 10.0 68 31-136 15-83 (436)
40 PF00731 AIRC: AIR carboxylase 91.0 2 4.3E-05 31.3 7.7 71 116-194 15-89 (150)
41 TIGR02113 coaC_strep phosphopa 90.8 2.8 6.1E-05 31.4 8.6 34 32-76 1-34 (177)
42 cd01990 Alpha_ANH_like_I This 90.5 4 8.8E-05 30.8 9.5 86 34-162 1-105 (202)
43 cd01995 ExsB ExsB is a transcr 90.3 5.4 0.00012 29.2 9.8 33 33-79 1-33 (169)
44 PRK05579 bifunctional phosphop 90.3 5.2 0.00011 34.0 10.8 37 30-77 5-41 (399)
45 PRK06029 3-octaprenyl-4-hydrox 90.1 3.6 7.8E-05 31.1 8.7 37 31-77 1-37 (185)
46 PF02844 GARS_N: Phosphoribosy 90.0 1.9 4.2E-05 29.1 6.4 24 138-161 48-71 (100)
47 TIGR03556 photolyase_8HDF deox 89.2 6 0.00013 34.4 10.5 89 40-161 11-99 (471)
48 PRK13982 bifunctional SbtC-lik 89.0 4.8 0.0001 35.0 9.7 38 29-77 68-105 (475)
49 cd01994 Alpha_ANH_like_IV This 88.9 8.5 0.00018 29.2 10.2 114 33-187 1-122 (194)
50 TIGR02765 crypto_DASH cryptoch 88.9 5.3 0.00011 34.2 10.0 96 39-161 10-105 (429)
51 PF00448 SRP54: SRP54-type pro 88.8 8.7 0.00019 29.2 10.4 113 34-189 5-120 (196)
52 PRK05253 sulfate adenylyltrans 88.5 7.5 0.00016 31.8 10.1 93 31-163 27-138 (301)
53 PRK14664 tRNA-specific 2-thiou 87.0 13 0.00028 31.3 10.8 34 31-78 5-38 (362)
54 cd01713 PAPS_reductase This do 86.6 9.7 0.00021 27.3 10.2 37 33-80 1-37 (173)
55 cd01985 ETF The electron trans 86.6 11 0.00024 27.9 12.1 24 141-164 80-103 (181)
56 PF07355 GRDB: Glycine/sarcosi 86.4 3.7 8E-05 34.1 7.1 61 129-189 48-117 (349)
57 PRK10867 signal recognition pa 86.3 16 0.00035 31.5 11.2 95 35-171 105-202 (433)
58 PRK08305 spoVFB dipicolinate s 86.1 7.1 0.00015 29.8 8.1 37 30-77 4-41 (196)
59 TIGR00521 coaBC_dfp phosphopan 85.9 13 0.00029 31.5 10.5 35 31-76 3-37 (390)
60 COG1606 ATP-utilizing enzymes 85.6 17 0.00036 29.0 10.3 89 31-162 17-123 (269)
61 TIGR00032 argG argininosuccina 85.0 13 0.00028 31.6 10.0 34 33-80 1-34 (394)
62 TIGR02852 spore_dpaB dipicolin 84.5 15 0.00033 27.8 9.2 35 32-77 1-36 (187)
63 PF02601 Exonuc_VII_L: Exonucl 84.2 7 0.00015 32.0 8.0 53 136-189 51-113 (319)
64 cd01986 Alpha_ANH_like Adenine 84.1 10 0.00022 25.3 8.5 34 34-81 1-34 (103)
65 KOG1467 Translation initiation 83.7 27 0.00058 30.5 11.1 108 32-192 360-470 (556)
66 PRK00143 mnmA tRNA-specific 2- 83.6 22 0.00047 29.6 10.7 34 32-79 1-34 (346)
67 PLN00200 argininosuccinate syn 83.5 27 0.00059 29.8 12.1 37 31-80 5-41 (404)
68 COG0541 Ffh Signal recognition 83.2 29 0.00063 29.9 11.2 98 33-174 103-204 (451)
69 cd01714 ETF_beta The electron 83.1 18 0.0004 27.5 9.4 85 36-165 29-121 (202)
70 TIGR00342 thiazole biosynthesi 82.5 28 0.00061 29.2 12.0 36 31-80 172-207 (371)
71 COG0452 Dfp Phosphopantothenoy 81.9 13 0.00028 31.6 8.8 36 31-77 4-39 (392)
72 PRK00109 Holliday junction res 81.9 5.3 0.00012 28.6 5.6 55 140-194 42-100 (138)
73 cd05565 PTS_IIB_lactose PTS_II 81.8 4.5 9.8E-05 27.2 4.9 66 115-191 15-80 (99)
74 TIGR02699 archaeo_AfpA archaeo 81.4 17 0.00037 27.2 8.3 35 33-77 1-36 (174)
75 PRK08745 ribulose-phosphate 3- 81.0 24 0.00052 27.5 9.6 46 115-161 156-201 (223)
76 TIGR00853 pts-lac PTS system, 80.8 5.5 0.00012 26.5 5.1 66 116-192 19-84 (95)
77 PRK06027 purU formyltetrahydro 80.2 25 0.00055 28.4 9.6 39 124-162 133-175 (286)
78 TIGR01917 gly_red_sel_B glycin 79.7 10 0.00022 32.4 7.3 62 128-189 43-113 (431)
79 PRK00919 GMP synthase subunit 79.7 33 0.00071 28.2 10.5 37 32-81 22-58 (307)
80 PF13167 GTP-bdg_N: GTP-bindin 79.7 16 0.00034 24.5 7.6 49 112-160 5-65 (95)
81 PRK08091 ribulose-phosphate 3- 79.3 28 0.00061 27.2 9.9 46 115-161 164-209 (228)
82 PRK11106 queuosine biosynthesi 79.2 28 0.0006 27.3 9.2 36 32-81 2-37 (231)
83 cd01712 ThiI ThiI is required 79.0 23 0.0005 26.1 11.8 35 33-81 1-35 (177)
84 COG0299 PurN Folate-dependent 78.9 27 0.00058 26.7 9.9 81 33-160 2-87 (200)
85 TIGR00420 trmU tRNA (5-methyla 78.3 39 0.00084 28.2 10.8 33 32-78 1-33 (352)
86 KOG1650 Predicted K+/H+-antipo 78.1 16 0.00035 33.9 8.7 43 30-82 613-655 (769)
87 PRK09590 celB cellobiose phosp 77.9 6.5 0.00014 26.7 4.7 68 115-191 16-83 (104)
88 TIGR00884 guaA_Cterm GMP synth 77.6 38 0.00082 27.8 10.4 36 32-80 17-52 (311)
89 cd01997 GMP_synthase_C The C-t 77.4 36 0.00078 27.7 9.7 35 33-80 1-35 (295)
90 TIGR01918 various_sel_PB selen 77.3 13 0.00028 31.8 7.2 61 129-189 44-113 (431)
91 TIGR02039 CysD sulfate adenyly 77.2 38 0.00083 27.6 10.2 40 31-80 19-58 (294)
92 cd01996 Alpha_ANH_like_III Thi 76.6 25 0.00054 25.1 9.9 22 33-54 3-24 (154)
93 PF04244 DPRP: Deoxyribodipyri 76.3 25 0.00053 27.5 8.2 79 109-192 43-126 (224)
94 PRK10674 deoxyribodipyrimidine 76.3 52 0.0011 28.6 11.1 93 39-161 11-105 (472)
95 PLN02948 phosphoribosylaminoim 76.3 58 0.0013 29.2 13.6 71 115-193 424-498 (577)
96 COG2102 Predicted ATPases of P 76.2 35 0.00075 26.6 10.5 91 33-162 2-96 (223)
97 TIGR00289 conserved hypothetic 75.6 36 0.00078 26.5 11.7 91 33-162 2-95 (222)
98 COG1066 Sms Predicted ATP-depe 75.1 37 0.0008 29.2 9.3 111 33-191 95-218 (456)
99 TIGR00959 ffh signal recogniti 74.5 56 0.0012 28.2 11.4 96 33-170 102-200 (428)
100 COG1927 Mtd Coenzyme F420-depe 74.4 12 0.00027 28.8 5.8 48 141-192 49-96 (277)
101 TIGR00655 PurU formyltetrahydr 74.4 43 0.00093 27.1 9.4 84 30-162 83-170 (280)
102 PF03652 UPF0081: Uncharacteri 74.2 8.8 0.00019 27.4 4.8 57 138-194 37-98 (135)
103 PRK09722 allulose-6-phosphate 73.7 41 0.00089 26.3 10.7 49 112-161 151-199 (229)
104 PRK14057 epimerase; Provisiona 73.6 44 0.00096 26.6 11.2 48 113-161 176-223 (254)
105 cd08550 GlyDH-like Glycerol_de 73.2 40 0.00087 27.9 9.3 69 117-193 38-111 (349)
106 PRK00994 F420-dependent methyl 73.2 11 0.00025 29.6 5.4 51 141-195 49-99 (277)
107 PRK00286 xseA exodeoxyribonucl 73.1 29 0.00062 29.8 8.6 52 137-189 173-230 (438)
108 PRK12563 sulfate adenylyltrans 72.6 44 0.00096 27.5 9.1 40 31-80 37-76 (312)
109 PRK13010 purU formyltetrahydro 72.1 48 0.001 26.9 9.2 83 31-162 93-179 (289)
110 PRK08535 translation initiatio 71.9 54 0.0012 26.9 11.3 61 123-191 166-230 (310)
111 TIGR00511 ribulose_e2b2 ribose 71.5 54 0.0012 26.7 10.8 61 123-191 161-225 (301)
112 PRK15424 propionate catabolism 71.1 25 0.00055 31.2 7.9 66 115-192 24-92 (538)
113 PRK08185 hypothetical protein; 71.0 18 0.0004 29.2 6.5 53 137-189 22-74 (283)
114 cd05564 PTS_IIB_chitobiose_lic 70.6 16 0.00035 24.3 5.2 66 116-192 15-80 (96)
115 COG0151 PurD Phosphoribosylami 70.3 24 0.00052 30.2 7.2 22 140-161 51-72 (428)
116 TIGR00250 RNAse_H_YqgF RNAse H 70.3 18 0.00038 25.6 5.6 55 139-193 35-93 (130)
117 PF03746 LamB_YcsF: LamB/YcsF 69.1 56 0.0012 25.9 10.3 123 32-187 28-160 (242)
118 PRK06850 hypothetical protein; 69.0 57 0.0012 28.8 9.5 77 32-136 35-111 (507)
119 TIGR01425 SRP54_euk signal rec 68.0 80 0.0017 27.3 11.1 56 119-174 146-204 (429)
120 COG1184 GCD2 Translation initi 68.0 66 0.0014 26.3 11.0 105 32-189 120-227 (301)
121 cd01998 tRNA_Me_trans tRNA met 67.5 64 0.0014 26.9 9.3 33 33-79 1-33 (349)
122 TIGR00237 xseA exodeoxyribonuc 67.3 26 0.00057 30.1 7.1 52 137-189 167-225 (432)
123 PRK08576 hypothetical protein; 67.2 54 0.0012 28.4 8.8 22 33-54 236-257 (438)
124 PRK13011 formyltetrahydrofolat 67.1 67 0.0014 26.0 9.5 83 31-162 89-175 (286)
125 TIGR01769 GGGP geranylgeranylg 66.9 18 0.0004 27.8 5.5 51 142-194 14-64 (205)
126 COG0191 Fba Fructose/tagatose 66.9 28 0.0006 28.2 6.6 73 118-190 7-82 (286)
127 PRK00509 argininosuccinate syn 66.7 82 0.0018 26.9 12.7 37 31-80 2-38 (399)
128 PRK04527 argininosuccinate syn 66.6 82 0.0018 26.9 10.5 36 31-80 2-37 (400)
129 TIGR03183 DNA_S_dndC putative 66.6 87 0.0019 27.2 10.1 41 32-77 14-54 (447)
130 PRK06801 hypothetical protein; 66.5 33 0.00072 27.8 7.1 69 121-189 10-80 (286)
131 PRK12737 gatY tagatose-bisphos 66.1 32 0.00069 27.9 6.9 70 120-189 9-80 (284)
132 COG0415 PhrB Deoxyribodipyrimi 65.4 68 0.0015 28.0 9.1 90 39-162 11-100 (461)
133 PF10087 DUF2325: Uncharacteri 65.3 37 0.00079 22.4 6.6 70 116-191 11-83 (97)
134 PRK09195 gatY tagatose-bisphos 65.2 31 0.00068 27.9 6.7 55 135-189 25-80 (284)
135 PF02887 PK_C: Pyruvate kinase 64.8 17 0.00037 24.9 4.6 44 140-192 4-48 (117)
136 COG0603 Predicted PP-loop supe 64.6 51 0.0011 25.7 7.5 37 31-81 2-38 (222)
137 TIGR02766 crypt_chrom_pln cryp 64.3 97 0.0021 26.9 12.9 73 112-187 48-120 (475)
138 PRK12857 fructose-1,6-bisphosp 64.0 36 0.00079 27.6 6.9 70 120-189 9-80 (284)
139 TIGR00273 iron-sulfur cluster- 63.6 32 0.00069 29.7 6.9 60 102-161 38-97 (432)
140 PRK11914 diacylglycerol kinase 63.5 41 0.00088 27.2 7.3 70 116-192 27-97 (306)
141 PRK02929 L-arabinose isomerase 63.0 78 0.0017 27.9 9.2 73 112-191 26-105 (499)
142 TIGR00290 MJ0570_dom MJ0570-re 62.6 72 0.0016 24.9 11.6 91 33-162 2-95 (223)
143 PRK11889 flhF flagellar biosyn 62.5 1E+02 0.0022 26.6 9.8 72 120-191 288-360 (436)
144 cd03557 L-arabinose_isomerase 62.5 93 0.002 27.3 9.5 49 139-193 49-101 (484)
145 PRK06806 fructose-bisphosphate 62.3 47 0.001 26.8 7.3 70 120-189 9-80 (281)
146 TIGR00930 2a30 K-Cl cotranspor 62.2 1.5E+02 0.0033 28.5 12.6 123 32-191 576-709 (953)
147 PF03575 Peptidase_S51: Peptid 62.1 15 0.00033 26.5 4.1 63 117-181 2-64 (154)
148 COG0036 Rpe Pentose-5-phosphat 62.0 74 0.0016 24.8 9.3 46 114-161 154-199 (220)
149 cd00947 TBP_aldolase_IIB Tagat 61.8 36 0.00078 27.5 6.5 69 121-189 5-75 (276)
150 PLN02858 fructose-bisphosphate 61.8 31 0.00067 34.4 7.1 95 95-189 1080-1175(1378)
151 COG1597 LCB5 Sphingosine kinas 61.7 60 0.0013 26.4 7.9 75 111-191 16-91 (301)
152 TIGR01858 tag_bisphos_ald clas 61.7 43 0.00093 27.1 6.9 53 137-189 25-78 (282)
153 TIGR02329 propionate_PrpR prop 61.6 65 0.0014 28.6 8.6 61 120-192 19-82 (526)
154 cd00946 FBP_aldolase_IIA Class 61.6 43 0.00092 28.0 7.0 70 120-189 7-93 (345)
155 PF05582 Peptidase_U57: YabG p 61.4 42 0.00091 27.2 6.6 49 114-162 115-164 (287)
156 TIGR02855 spore_yabG sporulati 61.2 33 0.00072 27.6 6.0 49 114-162 114-163 (283)
157 cd00954 NAL N-Acetylneuraminic 60.9 86 0.0019 25.2 9.0 77 115-192 58-137 (288)
158 COG1646 Predicted phosphate-bi 60.7 81 0.0018 24.8 8.4 53 139-193 28-80 (240)
159 cd02067 B12-binding B12 bindin 60.6 50 0.0011 22.4 7.7 67 120-189 19-87 (119)
160 cd00950 DHDPS Dihydrodipicolin 59.6 86 0.0019 25.0 8.4 79 113-192 55-135 (284)
161 cd07044 CofD_YvcK Family of Co 59.5 17 0.00036 29.9 4.3 51 140-192 164-215 (309)
162 PRK04147 N-acetylneuraminate l 59.1 91 0.002 25.1 8.5 78 113-191 59-138 (293)
163 PF03054 tRNA_Me_trans: tRNA m 59.1 1.1E+02 0.0023 25.7 9.7 35 32-80 1-35 (356)
164 PF04459 DUF512: Protein of un 58.8 66 0.0014 24.7 7.2 80 114-193 109-203 (204)
165 COG0552 FtsY Signal recognitio 58.8 1.1E+02 0.0023 25.6 10.2 58 115-173 181-242 (340)
166 TIGR03573 WbuX N-acetyl sugar 58.7 1.1E+02 0.0023 25.5 10.2 23 140-162 148-170 (343)
167 PF07476 MAAL_C: Methylasparta 58.3 70 0.0015 25.1 7.1 58 111-168 119-177 (248)
168 PRK09197 fructose-bisphosphate 57.8 53 0.0012 27.5 6.9 70 120-189 12-98 (350)
169 TIGR00683 nanA N-acetylneurami 57.5 1E+02 0.0022 24.9 9.0 78 114-192 57-137 (290)
170 COG0816 Predicted endonuclease 57.3 44 0.00095 24.1 5.6 54 140-193 41-98 (141)
171 cd00408 DHDPS-like Dihydrodipi 57.0 98 0.0021 24.6 9.2 79 113-192 52-132 (281)
172 cd02072 Glm_B12_BD B12 binding 56.9 67 0.0015 22.7 6.9 43 123-166 22-64 (128)
173 PF14639 YqgF: Holliday-juncti 56.6 22 0.00048 25.9 4.1 50 140-192 51-107 (150)
174 PRK05406 LamB/YcsF family prot 56.3 1E+02 0.0022 24.5 8.7 57 106-162 81-147 (246)
175 PRK12738 kbaY tagatose-bisphos 56.1 65 0.0014 26.2 7.1 53 137-189 27-80 (286)
176 TIGR00364 exsB protein. This p 55.9 85 0.0018 23.6 12.2 21 142-162 101-121 (201)
177 PRK00074 guaA GMP synthase; Re 55.8 1.5E+02 0.0032 26.2 10.0 37 31-80 215-251 (511)
178 KOG3180 Electron transfer flav 55.7 60 0.0013 25.0 6.3 82 41-162 39-124 (254)
179 COG0482 TrmU Predicted tRNA(5- 55.6 1.2E+02 0.0027 25.4 10.3 111 30-162 2-126 (356)
180 PRK13054 lipid kinase; Reviewe 55.6 1E+02 0.0022 24.9 8.3 68 119-192 22-93 (300)
181 COG0420 SbcD DNA repair exonuc 55.6 31 0.00068 29.0 5.5 29 109-139 21-49 (390)
182 PRK07998 gatY putative fructos 55.5 54 0.0012 26.6 6.5 69 121-189 10-80 (283)
183 cd00952 CHBPH_aldolase Trans-o 55.4 1.1E+02 0.0025 24.9 9.6 79 113-192 63-144 (309)
184 TIGR00674 dapA dihydrodipicoli 55.2 1.1E+02 0.0023 24.5 8.5 77 115-192 55-133 (285)
185 PF01008 IF-2B: Initiation fac 55.0 1.1E+02 0.0023 24.4 9.5 60 125-191 155-218 (282)
186 TIGR02313 HpaI-NOT-DapA 2,4-di 54.8 1.1E+02 0.0025 24.7 8.8 78 114-192 56-136 (294)
187 COG0036 Rpe Pentose-5-phosphat 54.3 54 0.0012 25.5 6.0 61 116-178 97-157 (220)
188 PF01261 AP_endonuc_2: Xylose 54.3 51 0.0011 24.3 6.1 81 45-155 70-158 (213)
189 PRK03170 dihydrodipicolinate s 54.2 1.1E+02 0.0025 24.5 9.1 78 114-192 57-136 (292)
190 TIGR03679 arCOG00187 arCOG0018 54.2 99 0.0022 23.8 9.7 88 36-163 2-97 (218)
191 PRK13059 putative lipid kinase 54.1 1.2E+02 0.0025 24.5 8.5 70 116-192 20-91 (295)
192 PRK08349 hypothetical protein; 53.6 94 0.002 23.4 10.9 33 33-79 2-34 (198)
193 PRK12569 hypothetical protein; 53.2 1.1E+02 0.0025 24.2 8.3 57 106-162 84-150 (245)
194 COG1440 CelA Phosphotransferas 52.9 62 0.0014 21.9 5.4 64 117-191 18-81 (102)
195 TIGR00167 cbbA ketose-bisphosp 52.8 91 0.002 25.3 7.4 70 120-189 9-83 (288)
196 PF00834 Ribul_P_3_epim: Ribul 52.6 20 0.00043 27.4 3.5 47 113-160 149-195 (201)
197 TIGR00034 aroFGH phospho-2-deh 52.6 1.2E+02 0.0026 25.4 8.1 131 31-192 46-184 (344)
198 COG1570 XseA Exonuclease VII, 52.5 71 0.0015 27.6 7.0 54 135-189 171-231 (440)
199 PRK13055 putative lipid kinase 52.2 1.3E+02 0.0029 24.7 8.7 73 114-192 19-94 (334)
200 smart00732 YqgFc Likely ribonu 51.3 64 0.0014 20.8 5.6 54 140-194 39-95 (99)
201 PRK06372 translation initiatio 51.2 74 0.0016 25.4 6.5 64 120-191 126-193 (253)
202 PRK13337 putative lipid kinase 51.0 1.3E+02 0.0028 24.3 8.9 70 117-192 21-92 (304)
203 cd08173 Gro1PDH Sn-glycerol-1- 50.7 85 0.0018 25.9 7.2 69 116-193 40-112 (339)
204 TIGR01859 fruc_bis_ald_ fructo 50.7 92 0.002 25.2 7.2 70 121-190 8-81 (282)
205 PF01116 F_bP_aldolase: Fructo 50.6 37 0.0008 27.6 4.9 70 120-189 8-79 (287)
206 PRK06731 flhF flagellar biosyn 50.6 64 0.0014 25.9 6.2 71 121-192 123-195 (270)
207 PF00885 DMRL_synthase: 6,7-di 50.4 93 0.002 22.4 7.8 77 111-187 16-103 (144)
208 cd02070 corrinoid_protein_B12- 50.4 1.1E+02 0.0024 23.1 7.4 68 120-190 102-172 (201)
209 cd04724 Tryptophan_synthase_al 50.3 1.2E+02 0.0026 23.7 8.6 73 116-188 117-192 (242)
210 PRK08745 ribulose-phosphate 3- 50.3 66 0.0014 25.1 6.1 60 117-178 99-158 (223)
211 COG1139 Uncharacterized conser 50.1 76 0.0016 27.4 6.7 90 102-191 52-153 (459)
212 PF01933 UPF0052: Uncharacteri 50.0 33 0.00071 28.0 4.5 51 140-192 173-224 (300)
213 PRK13399 fructose-1,6-bisphosp 49.8 90 0.002 26.1 7.1 70 120-189 9-81 (347)
214 PRK07315 fructose-bisphosphate 49.3 89 0.0019 25.4 6.9 70 120-189 9-83 (293)
215 TIGR01521 FruBisAldo_II_B fruc 49.1 94 0.002 26.0 7.1 70 120-189 7-79 (347)
216 TIGR01826 CofD_related conserv 49.0 41 0.00088 27.7 4.9 51 139-192 161-213 (310)
217 PRK01565 thiamine biosynthesis 48.9 1.7E+02 0.0036 24.9 11.3 35 31-79 176-210 (394)
218 PHA02031 putative DnaG-like pr 48.8 45 0.00098 26.7 5.0 36 32-77 207-242 (266)
219 PRK05920 aromatic acid decarbo 48.6 39 0.00085 26.0 4.5 37 30-77 2-38 (204)
220 TIGR02069 cyanophycinase cyano 48.6 1.3E+02 0.0029 23.7 9.6 62 117-180 45-110 (250)
221 TIGR01520 FruBisAldo_II_A fruc 48.6 1E+02 0.0022 25.9 7.2 68 122-189 20-105 (357)
222 COG0329 DapA Dihydrodipicolina 48.1 98 0.0021 25.2 7.1 79 113-192 59-139 (299)
223 PRK08883 ribulose-phosphate 3- 48.0 1.3E+02 0.0028 23.3 10.1 45 116-161 153-197 (220)
224 PRK10481 hypothetical protein; 47.9 1.3E+02 0.0029 23.4 7.7 55 128-189 153-212 (224)
225 PF06508 QueC: Queuosine biosy 47.8 1.2E+02 0.0026 23.2 7.2 35 33-81 1-35 (209)
226 PF01884 PcrB: PcrB family; I 47.4 43 0.00094 26.3 4.6 50 140-193 20-69 (230)
227 cd00951 KDGDH 5-dehydro-4-deox 47.3 1.5E+02 0.0032 23.9 8.5 75 115-191 57-133 (289)
228 PF09043 Lys-AminoMut_A: D-Lys 47.0 1.7E+02 0.0036 25.4 8.2 46 131-176 149-197 (509)
229 PRK08005 epimerase; Validated 46.8 81 0.0018 24.3 6.0 61 117-179 95-155 (210)
230 COG1691 NCAIR mutase (PurE)-re 46.3 1.5E+02 0.0032 23.5 7.3 65 120-192 136-204 (254)
231 cd07187 YvcK_like family of mo 46.2 50 0.0011 27.1 5.1 50 140-192 165-216 (308)
232 cd02071 MM_CoA_mut_B12_BD meth 46.1 96 0.0021 21.3 6.9 59 120-181 19-77 (122)
233 TIGR03702 lip_kinase_YegS lipi 46.1 1.5E+02 0.0034 23.7 8.2 66 120-191 19-88 (293)
234 cd07186 CofD_like LPPG:FO 2-ph 45.9 88 0.0019 25.7 6.3 51 139-191 172-223 (303)
235 cd00532 MGS-like MGS-like doma 45.9 92 0.002 21.0 6.2 65 125-189 39-105 (112)
236 TIGR00640 acid_CoA_mut_C methy 45.6 1.1E+02 0.0023 21.7 6.7 66 120-189 22-89 (132)
237 PRK08610 fructose-bisphosphate 45.4 1.2E+02 0.0025 24.7 7.0 69 121-189 10-83 (286)
238 PLN02331 phosphoribosylglycina 45.3 1.4E+02 0.003 22.9 9.9 41 121-161 42-87 (207)
239 KOG0404 Thioredoxin reductase 44.6 55 0.0012 25.9 4.8 56 3-80 135-191 (322)
240 PRK00771 signal recognition pa 44.6 2.1E+02 0.0045 24.8 11.1 19 152-170 175-193 (437)
241 PRK13057 putative lipid kinase 44.5 1E+02 0.0022 24.7 6.6 68 117-192 15-83 (287)
242 TIGR00619 sbcd exonuclease Sbc 44.2 72 0.0016 25.2 5.6 25 114-140 25-49 (253)
243 PRK15411 rcsA colanic acid cap 44.0 1.4E+02 0.003 22.6 8.3 47 139-191 34-85 (207)
244 cd00453 FTBP_aldolase_II Fruct 43.8 1E+02 0.0022 25.8 6.4 68 122-189 6-91 (340)
245 cd01999 Argininosuccinate_Synt 43.7 2E+02 0.0044 24.4 9.7 34 34-80 1-34 (385)
246 PF04007 DUF354: Protein of un 43.6 1.9E+02 0.0041 24.0 8.4 50 115-167 14-63 (335)
247 PF02142 MGS: MGS-like domain 43.5 44 0.00095 21.9 3.7 65 122-187 24-94 (95)
248 cd05403 NT_KNTase_like Nucleot 43.4 45 0.00098 21.0 3.7 60 130-192 17-76 (93)
249 PRK12858 tagatose 1,6-diphosph 43.3 2E+02 0.0042 24.1 9.9 85 109-193 137-251 (340)
250 smart00851 MGS MGS-like domain 43.1 65 0.0014 20.7 4.4 62 125-187 27-89 (90)
251 COG4126 Hydantoin racemase [Am 42.9 37 0.00079 26.5 3.5 39 141-187 163-201 (230)
252 PRK02261 methylaspartate mutas 42.8 1.2E+02 0.0026 21.5 7.7 67 120-189 23-91 (137)
253 PF01012 ETF: Electron transfe 42.7 1.3E+02 0.0027 21.7 7.3 83 110-192 14-99 (164)
254 cd05569 PTS_IIB_fructose PTS_I 42.6 58 0.0013 21.5 4.2 45 118-164 19-65 (96)
255 PRK08091 ribulose-phosphate 3- 42.4 1.1E+02 0.0023 24.0 6.2 60 117-178 105-166 (228)
256 PF01507 PAPS_reduct: Phosphoa 42.4 1.3E+02 0.0027 21.6 7.3 22 33-54 1-22 (174)
257 cd01971 Nitrogenase_VnfN_like 42.2 44 0.00095 28.6 4.4 26 138-163 102-127 (427)
258 PF03162 Y_phosphatase2: Tyros 41.8 1.2E+02 0.0026 22.3 6.1 66 125-190 29-98 (164)
259 PRK14561 hypothetical protein; 41.8 1.5E+02 0.0033 22.3 9.6 19 33-51 2-20 (194)
260 cd00578 L-fuc_L-ara-isomerases 41.6 1.6E+02 0.0034 25.4 7.7 48 140-193 51-98 (452)
261 PRK07709 fructose-bisphosphate 41.6 1.7E+02 0.0038 23.7 7.4 69 121-189 10-83 (285)
262 TIGR03249 KdgD 5-dehydro-4-deo 41.5 1.9E+02 0.0041 23.3 8.3 75 114-190 61-137 (296)
263 PRK08335 translation initiatio 41.1 1.9E+02 0.0042 23.3 11.8 62 123-192 155-220 (275)
264 PF11215 DUF3010: Protein of u 41.1 65 0.0014 23.1 4.3 50 142-191 51-102 (138)
265 TIGR00583 mre11 DNA repair pro 40.8 1E+02 0.0022 26.4 6.2 12 182-193 109-120 (405)
266 PRK07084 fructose-bisphosphate 40.6 1.2E+02 0.0027 25.0 6.5 70 120-189 15-91 (321)
267 PF13607 Succ_CoA_lig: Succiny 40.3 1.4E+02 0.0029 21.3 6.2 72 118-193 15-91 (138)
268 PHA02546 47 endonuclease subun 40.2 81 0.0017 26.1 5.5 26 113-140 24-49 (340)
269 cd02069 methionine_synthase_B1 40.2 1.5E+02 0.0033 22.7 6.7 67 120-189 108-175 (213)
270 PRK08005 epimerase; Validated 40.1 1.7E+02 0.0037 22.5 8.6 28 134-161 166-193 (210)
271 PF14582 Metallophos_3: Metall 39.9 71 0.0015 25.3 4.7 18 177-194 83-100 (255)
272 TIGR00147 lipid kinase, YegS/R 39.6 1.9E+02 0.0042 23.0 8.7 72 115-192 19-92 (293)
273 PF05728 UPF0227: Uncharacteri 39.5 1.2E+02 0.0025 22.9 5.8 65 121-193 21-91 (187)
274 PF01993 MTD: methylene-5,6,7, 39.4 58 0.0013 25.8 4.2 47 142-192 49-95 (276)
275 TIGR00646 MG010 DNA primase-re 39.4 1.2E+02 0.0025 23.7 5.9 37 31-77 154-190 (218)
276 TIGR02127 pyrF_sub2 orotidine 39.3 2E+02 0.0043 23.0 9.0 37 31-77 13-59 (261)
277 PRK05835 fructose-bisphosphate 39.1 1.6E+02 0.0035 24.2 6.9 68 122-189 10-80 (307)
278 PF13662 Toprim_4: Toprim doma 39.0 41 0.00089 21.2 2.9 25 31-55 46-70 (81)
279 COG1504 Uncharacterized conser 38.8 67 0.0015 22.2 3.9 39 151-192 60-98 (121)
280 cd03364 TOPRIM_DnaG_primases T 38.6 83 0.0018 19.6 4.3 25 31-55 43-67 (79)
281 TIGR02370 pyl_corrinoid methyl 38.5 1.7E+02 0.0037 22.0 7.3 59 120-181 104-162 (197)
282 PRK10653 D-ribose transporter 38.3 2E+02 0.0043 22.7 8.4 71 115-191 43-115 (295)
283 cd01972 Nitrogenase_VnfE_like 38.2 57 0.0012 27.9 4.5 13 150-162 118-130 (426)
284 cd00958 DhnA Class I fructose- 37.9 1.9E+02 0.004 22.3 8.7 73 111-191 105-187 (235)
285 PF03129 HGTP_anticodon: Antic 37.7 1.1E+02 0.0024 19.5 5.7 50 112-161 13-62 (94)
286 PRK09196 fructose-1,6-bisphosp 37.5 1.7E+02 0.0036 24.6 6.9 53 137-189 27-81 (347)
287 PF03358 FMN_red: NADPH-depend 37.4 1.4E+02 0.0031 20.9 5.9 50 112-163 15-81 (152)
288 TIGR00715 precor6x_red precorr 36.9 2.2E+02 0.0047 22.7 7.4 51 137-193 181-233 (256)
289 PRK00766 hypothetical protein; 36.8 76 0.0016 24.2 4.4 58 128-189 42-104 (194)
290 PF01791 DeoC: DeoC/LacD famil 36.7 2E+02 0.0043 22.2 7.5 80 110-190 107-200 (236)
291 cd01967 Nitrogenase_MoFe_alpha 36.4 73 0.0016 26.9 4.8 13 150-162 116-128 (406)
292 cd01981 Pchlide_reductase_B Pc 36.2 76 0.0016 27.1 4.9 9 69-77 24-32 (430)
293 PF02568 ThiI: Thiamine biosyn 36.2 1.9E+02 0.0042 22.0 7.5 37 31-81 3-39 (197)
294 cd01424 MGS_CPS_II Methylglyox 36.1 1.3E+02 0.0029 20.0 6.6 61 125-188 40-100 (110)
295 TIGR01283 nifE nitrogenase mol 36.0 59 0.0013 28.1 4.2 51 140-190 109-159 (456)
296 TIGR00696 wecB_tagA_cpsF bacte 35.8 1.7E+02 0.0037 21.8 6.2 53 128-188 74-130 (177)
297 PRK08392 hypothetical protein; 35.7 1.9E+02 0.0042 22.0 6.7 69 115-185 137-205 (215)
298 PRK13789 phosphoribosylamine-- 35.7 1.8E+02 0.0038 25.0 7.0 22 31-54 4-25 (426)
299 cd01539 PBP1_GGBP Periplasmic 35.6 2.2E+02 0.0049 22.5 8.1 69 117-191 18-90 (303)
300 PTZ00408 NAD-dependent deacety 35.4 1.9E+02 0.004 22.8 6.6 52 135-193 154-209 (242)
301 cd01968 Nitrogenase_NifE_I Nit 35.3 78 0.0017 26.9 4.8 11 152-162 117-127 (410)
302 COG1058 CinA Predicted nucleot 35.2 2.1E+02 0.0046 22.8 6.8 67 116-187 22-91 (255)
303 PRK08384 thiamine biosynthesis 35.1 2.8E+02 0.0061 23.5 11.2 34 31-78 180-213 (381)
304 PRK06988 putative formyltransf 35.1 2.1E+02 0.0046 23.4 7.2 41 119-162 46-87 (312)
305 PRK00861 putative lipid kinase 35.0 2.1E+02 0.0046 22.9 7.1 57 129-192 33-90 (300)
306 PF02310 B12-binding: B12 bind 35.0 1.4E+02 0.003 20.0 8.7 66 120-189 20-86 (121)
307 PRK05234 mgsA methylglyoxal sy 34.8 1.7E+02 0.0037 20.9 8.4 35 125-160 46-83 (142)
308 cd01715 ETF_alpha The electron 34.8 1.8E+02 0.0039 21.1 11.1 25 140-164 71-95 (168)
309 PRK05772 translation initiatio 34.8 1.9E+02 0.0042 24.4 6.9 63 124-192 223-289 (363)
310 PF01902 ATP_bind_4: ATP-bindi 34.6 2.2E+02 0.0047 22.1 9.1 91 33-162 2-95 (218)
311 PLN02476 O-methyltransferase 34.6 1.3E+02 0.0029 24.3 5.8 48 115-162 154-204 (278)
312 cd06318 PBP1_ABC_sugar_binding 34.4 2.2E+02 0.0047 22.0 8.5 72 114-191 15-88 (282)
313 COG0655 WrbA Multimeric flavod 34.4 1.9E+02 0.004 21.9 6.4 30 41-80 13-42 (207)
314 PRK03620 5-dehydro-4-deoxygluc 34.4 2.5E+02 0.0055 22.7 8.5 76 114-191 63-140 (303)
315 PRK08883 ribulose-phosphate 3- 34.3 1.7E+02 0.0036 22.7 6.1 43 117-161 95-137 (220)
316 TIGR00347 bioD dethiobiotin sy 34.3 90 0.0019 22.4 4.5 22 144-165 121-142 (166)
317 KOG1650 Predicted K+/H+-antipo 34.2 4E+02 0.0087 25.0 10.2 144 31-190 443-598 (769)
318 CHL00076 chlB photochlorophyll 34.2 81 0.0018 27.8 4.8 26 41-80 10-35 (513)
319 PRK06371 translation initiatio 34.1 1.4E+02 0.0031 24.7 6.0 63 123-191 191-257 (329)
320 KOG0780 Signal recognition par 34.1 3.1E+02 0.0067 23.7 11.7 57 116-172 144-203 (483)
321 TIGR01501 MthylAspMutase methy 34.0 1.7E+02 0.0038 20.8 6.6 66 122-190 23-89 (134)
322 TIGR00177 molyb_syn molybdenum 34.0 1.5E+02 0.0033 21.0 5.5 40 121-160 33-74 (144)
323 PF01596 Methyltransf_3: O-met 33.8 91 0.002 23.9 4.5 44 119-162 85-131 (205)
324 PRK05703 flhF flagellar biosyn 33.8 3.1E+02 0.0067 23.6 10.3 48 118-168 268-315 (424)
325 PRK00843 egsA NAD(P)-dependent 33.5 2.4E+02 0.0053 23.4 7.4 46 140-193 75-121 (350)
326 PRK08227 autoinducer 2 aldolas 33.5 2.5E+02 0.0055 22.5 11.7 72 112-193 124-202 (264)
327 PRK11070 ssDNA exonuclease Rec 33.1 3.7E+02 0.008 24.3 9.0 36 127-162 126-161 (575)
328 PF01177 Asp_Glu_race: Asp/Glu 32.9 96 0.0021 23.3 4.6 41 142-187 161-205 (216)
329 cd06315 PBP1_ABC_sugar_binding 32.9 2.4E+02 0.0051 22.0 8.0 72 114-191 16-89 (280)
330 PF06506 PrpR_N: Propionate ca 32.6 1.7E+02 0.0036 21.6 5.7 50 131-192 10-62 (176)
331 TIGR00381 cdhD CO dehydrogenas 32.4 1.7E+02 0.0038 24.9 6.2 23 142-164 178-200 (389)
332 PLN02781 Probable caffeoyl-CoA 32.0 1.6E+02 0.0036 22.8 5.8 44 118-161 107-153 (234)
333 cd06295 PBP1_CelR Ligand bindi 31.8 2.4E+02 0.0052 21.7 9.4 68 116-191 28-95 (275)
334 cd06320 PBP1_allose_binding Pe 31.8 2.4E+02 0.0052 21.7 8.0 72 114-191 15-90 (275)
335 cd03145 GAT1_cyanophycinase Ty 31.7 2.4E+02 0.0051 21.6 10.3 39 141-181 74-112 (217)
336 COG3623 SgaU Putative L-xylulo 31.4 2.2E+02 0.0047 22.7 6.1 76 42-147 92-167 (287)
337 TIGR00486 YbgI_SA1388 dinuclea 31.2 2.2E+02 0.0047 22.4 6.4 54 137-191 174-245 (249)
338 TIGR01304 IMP_DH_rel_2 IMP deh 31.0 3.1E+02 0.0068 23.2 7.6 64 121-188 125-193 (369)
339 cd01538 PBP1_ABC_xylose_bindin 30.9 2.6E+02 0.0056 21.9 9.0 71 115-191 16-88 (288)
340 PF00072 Response_reg: Respons 30.9 1.5E+02 0.0032 19.0 7.5 48 141-192 32-80 (112)
341 cd06309 PBP1_YtfQ_like Peripla 30.8 2.5E+02 0.0054 21.6 8.5 72 114-191 15-88 (273)
342 cd00840 MPP_Mre11_N Mre11 nucl 30.7 1.5E+02 0.0032 22.1 5.4 26 113-140 26-51 (223)
343 PRK09875 putative hydrolase; P 30.7 2.2E+02 0.0047 23.2 6.4 51 113-163 137-189 (292)
344 cd06533 Glyco_transf_WecG_TagA 30.3 2.2E+02 0.0048 20.9 6.6 44 140-189 87-130 (171)
345 PF01220 DHquinase_II: Dehydro 30.1 2.1E+02 0.0046 20.6 5.8 72 112-190 26-99 (140)
346 PRK14478 nitrogenase molybdenu 29.8 87 0.0019 27.3 4.3 10 68-77 55-64 (475)
347 COG0391 Uncharacterized conser 29.7 1E+02 0.0023 25.5 4.4 50 139-191 178-229 (323)
348 PRK08057 cobalt-precorrin-6x r 29.7 1.4E+02 0.0031 23.6 5.1 42 145-192 183-224 (248)
349 COG3969 Predicted phosphoadeno 29.7 69 0.0015 26.8 3.3 39 31-79 27-66 (407)
350 PF07302 AroM: AroM protein; 29.4 2.8E+02 0.006 21.7 8.4 43 141-190 164-209 (221)
351 PRK14057 epimerase; Provisiona 29.2 2.5E+02 0.0054 22.4 6.4 59 118-178 113-180 (254)
352 PLN02347 GMP synthetase 29.2 4.2E+02 0.0091 23.7 8.5 37 31-80 229-265 (536)
353 PF10138 vWA-TerF-like: vWA fo 29.1 2.7E+02 0.0058 21.4 6.8 41 31-81 105-145 (200)
354 PRK01269 tRNA s(4)U8 sulfurtra 29.1 3.9E+02 0.0085 23.3 11.3 36 31-80 177-212 (482)
355 PRK06455 riboflavin synthase; 28.9 2.4E+02 0.0051 20.7 7.0 74 116-189 16-97 (155)
356 COG0426 FpaA Uncharacterized f 28.5 3.8E+02 0.0081 22.9 7.6 46 115-162 262-307 (388)
357 PRK10624 L-1,2-propanediol oxi 28.5 2.5E+02 0.0054 23.6 6.7 45 116-160 46-96 (382)
358 cd04731 HisF The cyclase subun 28.5 2.8E+02 0.0061 21.4 7.5 51 141-191 151-201 (243)
359 PF07279 DUF1442: Protein of u 28.5 2.9E+02 0.0062 21.6 8.1 25 137-163 102-126 (218)
360 KOG0781 Signal recognition par 28.3 4.3E+02 0.0093 23.5 10.9 112 29-178 377-492 (587)
361 PRK09722 allulose-6-phosphate 28.1 2.5E+02 0.0055 21.9 6.2 60 117-178 97-156 (229)
362 cd02812 PcrB_like PcrB_like pr 28.1 1.7E+02 0.0037 22.8 5.2 51 141-194 14-65 (219)
363 COG0434 SgcQ Predicted TIM-bar 28.1 1.2E+02 0.0026 24.1 4.3 50 137-189 162-211 (263)
364 COG1197 Mfd Transcription-repa 27.9 3.6E+02 0.0078 26.6 8.0 49 113-162 656-706 (1139)
365 PRK08299 isocitrate dehydrogen 27.9 1.1E+02 0.0023 26.3 4.3 26 42-77 185-210 (402)
366 KOG3111 D-ribulose-5-phosphate 27.9 2.5E+02 0.0055 21.6 5.8 60 117-178 101-160 (224)
367 PRK10415 tRNA-dihydrouridine s 27.8 3.4E+02 0.0074 22.2 8.4 64 128-191 133-202 (321)
368 KOG3974 Predicted sugar kinase 27.7 2E+02 0.0043 23.3 5.4 30 130-161 81-110 (306)
369 cd06361 PBP1_GPC6A_like Ligand 27.6 3.8E+02 0.0081 22.6 10.1 24 139-162 245-268 (403)
370 PRK13606 LPPG:FO 2-phospho-L-l 27.4 2.1E+02 0.0046 23.5 5.8 47 140-191 175-223 (303)
371 COG3046 Uncharacterized protei 27.4 4.1E+02 0.009 23.1 8.1 76 112-192 50-126 (505)
372 cd08170 GlyDH Glycerol dehydro 26.8 3.6E+02 0.0079 22.2 8.6 72 115-193 36-111 (351)
373 PLN02496 probable phosphopanto 26.7 2.9E+02 0.0062 21.4 6.1 36 30-77 18-53 (209)
374 PRK09261 phospho-2-dehydro-3-d 26.6 3.9E+02 0.0084 22.5 10.2 64 116-191 125-188 (349)
375 PF01729 QRPTase_C: Quinolinat 26.4 2E+02 0.0043 21.3 5.1 33 128-161 125-157 (169)
376 cd06322 PBP1_ABC_sugar_binding 26.3 3E+02 0.0064 21.0 8.3 72 114-191 15-88 (267)
377 COG1036 Archaeal flavoproteins 26.1 1.4E+02 0.003 22.3 4.0 49 148-196 84-138 (187)
378 COG0745 OmpR Response regulato 26.1 3.1E+02 0.0068 21.2 6.9 64 120-192 16-81 (229)
379 PRK12822 phospho-2-dehydro-3-d 25.9 4E+02 0.0087 22.4 8.1 133 31-192 51-189 (356)
380 cd07766 DHQ_Fe-ADH Dehydroquin 25.9 3.5E+02 0.0075 22.0 7.0 46 140-193 66-114 (332)
381 cd01537 PBP1_Repressors_Sugar_ 25.9 2.8E+02 0.0062 20.7 9.2 70 116-192 17-88 (264)
382 PRK14072 6-phosphofructokinase 25.7 4.3E+02 0.0094 22.7 9.0 46 115-161 90-139 (416)
383 PRK00090 bioD dithiobiotin syn 25.5 1.5E+02 0.0032 22.5 4.5 23 143-165 124-146 (222)
384 PLN02828 formyltetrahydrofolat 25.5 3.6E+02 0.0078 21.7 10.4 87 30-162 69-157 (268)
385 PRK12361 hypothetical protein; 25.4 4E+02 0.0086 23.6 7.7 70 115-192 260-330 (547)
386 smart00852 MoCF_biosynth Proba 25.4 2.4E+02 0.0051 19.6 5.6 38 120-159 23-64 (135)
387 PF10672 Methyltrans_SAM: S-ad 25.4 1.5E+02 0.0033 24.0 4.7 50 113-162 155-205 (286)
388 cd06317 PBP1_ABC_sugar_binding 25.2 3.1E+02 0.0067 20.9 8.9 70 116-191 18-89 (275)
389 cd03146 GAT1_Peptidase_E Type 25.2 2E+02 0.0044 21.9 5.2 59 118-180 49-108 (212)
390 PRK02090 phosphoadenosine phos 25.2 3.3E+02 0.0072 21.2 6.6 35 32-80 41-75 (241)
391 COG1149 MinD superfamily P-loo 25.1 97 0.0021 25.1 3.4 49 7-75 172-220 (284)
392 CHL00200 trpA tryptophan synth 25.1 3.6E+02 0.0078 21.5 8.1 72 117-188 133-207 (263)
393 TIGR01768 GGGP-family geranylg 25.0 2.4E+02 0.0052 22.0 5.5 50 141-193 16-65 (223)
394 PF02878 PGM_PMM_I: Phosphoglu 25.0 1.3E+02 0.0029 21.0 3.9 40 31-80 40-79 (137)
395 cd06282 PBP1_GntR_like_2 Ligan 25.0 3.1E+02 0.0067 20.7 9.0 69 115-190 16-86 (266)
396 PRK05647 purN phosphoribosylgl 24.9 3.1E+02 0.0068 20.8 9.4 42 120-161 43-89 (200)
397 cd06277 PBP1_LacI_like_1 Ligan 24.9 3.2E+02 0.0069 20.9 9.3 68 115-191 19-88 (268)
398 cd01029 TOPRIM_primases TOPRIM 24.8 1.8E+02 0.0038 17.9 4.3 24 31-54 43-66 (79)
399 PF13727 CoA_binding_3: CoA-bi 24.8 1.5E+02 0.0032 21.0 4.3 46 141-190 130-175 (175)
400 TIGR03297 Ppyr-DeCO2ase phosph 24.8 98 0.0021 26.0 3.6 55 138-192 63-124 (361)
401 PF02571 CbiJ: Precorrin-6x re 24.7 1.8E+02 0.0038 23.1 4.8 50 138-193 179-229 (249)
402 cd08175 G1PDH Glycerol-1-phosp 24.7 4E+02 0.0087 22.0 7.8 67 118-193 40-114 (348)
403 TIGR03151 enACPred_II putative 24.6 3.6E+02 0.0077 22.0 6.7 67 120-190 101-168 (307)
404 cd06284 PBP1_LacI_like_6 Ligan 24.5 3.1E+02 0.0068 20.7 8.7 68 115-191 16-85 (267)
405 cd01979 Pchlide_reductase_N Pc 24.5 1.2E+02 0.0026 25.7 4.1 40 1-47 1-40 (396)
406 PLN02589 caffeoyl-CoA O-methyl 24.4 2.5E+02 0.0054 22.2 5.6 45 118-162 118-166 (247)
407 TIGR00542 hxl6Piso_put hexulos 24.4 3.1E+02 0.0068 21.6 6.4 50 109-158 127-179 (279)
408 PF01935 DUF87: Domain of unkn 24.3 1.3E+02 0.0029 22.8 4.1 39 152-192 23-61 (229)
409 cd07392 MPP_PAE1087 Pyrobaculu 24.3 2.5E+02 0.0054 20.2 5.4 16 177-192 46-61 (188)
410 cd07388 MPP_Tt1561 Thermus the 24.3 2.2E+02 0.0049 22.1 5.3 19 141-159 20-38 (224)
411 cd06313 PBP1_ABC_sugar_binding 24.2 3.4E+02 0.0074 21.0 7.6 70 116-191 17-88 (272)
412 cd06323 PBP1_ribose_binding Pe 24.0 3.2E+02 0.007 20.7 7.6 70 116-191 17-88 (268)
413 COG3075 GlpB Anaerobic glycero 23.8 4.5E+02 0.0098 22.3 7.6 48 138-192 204-251 (421)
414 cd02065 B12-binding_like B12 b 23.8 2.3E+02 0.005 18.9 6.8 66 120-189 19-86 (125)
415 cd06267 PBP1_LacI_sugar_bindin 23.7 3.2E+02 0.0069 20.4 8.5 67 117-191 18-86 (264)
416 PRK12756 phospho-2-dehydro-3-d 23.5 2.9E+02 0.0063 23.2 5.9 128 31-192 50-188 (348)
417 TIGR02260 benz_CoA_red_B benzo 23.4 2.4E+02 0.0051 24.2 5.7 54 140-193 338-391 (413)
418 KOG2310 DNA repair exonuclease 23.4 1.3E+02 0.0029 26.9 4.1 51 140-190 40-96 (646)
419 COG4770 Acetyl/propionyl-CoA c 23.3 2.3E+02 0.0049 25.6 5.5 42 143-187 90-131 (645)
420 cd06319 PBP1_ABC_sugar_binding 23.2 3.5E+02 0.0075 20.7 8.4 71 115-191 16-88 (277)
421 PRK05395 3-dehydroquinate dehy 23.1 3E+02 0.0065 20.0 6.4 71 113-190 28-100 (146)
422 PRK07178 pyruvate carboxylase 23.1 3.3E+02 0.0071 23.6 6.6 35 31-80 2-36 (472)
423 TIGR01862 N2-ase-Ialpha nitrog 22.9 1.4E+02 0.0031 25.7 4.3 12 151-162 148-159 (443)
424 PRK10799 metal-binding protein 22.9 3.8E+02 0.0082 21.0 6.9 57 135-192 170-244 (247)
425 TIGR00829 FRU PTS system, fruc 22.8 1.8E+02 0.004 18.7 3.9 45 119-163 19-63 (85)
426 PF02610 Arabinose_Isome: L-ar 22.7 3.2E+02 0.007 23.0 6.1 47 140-192 59-106 (359)
427 cd08199 EEVS 2-epi-5-epi-valio 22.7 4.6E+02 0.0099 21.9 8.2 67 118-192 43-123 (354)
428 TIGR03572 WbuZ glycosyl amidat 22.6 3.6E+02 0.0077 20.6 7.3 50 142-191 156-205 (232)
429 TIGR01279 DPOR_bchN light-inde 22.6 1.5E+02 0.0033 25.2 4.4 27 138-164 100-127 (407)
430 CHL00073 chlN photochlorophyll 22.6 1.6E+02 0.0035 25.7 4.5 27 138-164 113-140 (457)
431 PF03808 Glyco_tran_WecB: Glyc 22.5 3.2E+02 0.0069 20.0 6.5 45 139-189 88-132 (172)
432 PRK06247 pyruvate kinase; Prov 22.4 2.2E+02 0.0047 25.0 5.3 44 140-192 357-401 (476)
433 PF10808 DUF2542: Protein of u 22.3 73 0.0016 20.2 1.8 29 165-194 23-51 (79)
434 COG0107 HisF Imidazoleglycerol 22.2 1.7E+02 0.0036 23.2 4.1 61 128-189 20-80 (256)
435 PF13362 Toprim_3: Toprim doma 22.2 2.1E+02 0.0046 18.4 4.3 25 30-54 40-66 (96)
436 TIGR00524 eIF-2B_rel eIF-2B al 22.1 4.4E+02 0.0096 21.5 10.6 62 124-191 174-239 (303)
437 PF10236 DAP3: Mitochondrial r 22.1 4.4E+02 0.0095 21.5 9.5 108 71-191 51-163 (309)
438 PF02952 Fucose_iso_C: L-fucos 22.0 1.6E+02 0.0034 20.8 3.8 33 126-158 109-141 (142)
439 COG0159 TrpA Tryptophan syntha 22.0 4.3E+02 0.0092 21.3 7.8 20 141-160 136-155 (265)
440 cd01976 Nitrogenase_MoFe_alpha 21.9 1.6E+02 0.0034 25.3 4.3 27 138-164 115-142 (421)
441 PLN02925 4-hydroxy-3-methylbut 21.8 6.6E+02 0.014 23.4 8.8 87 104-190 199-305 (733)
442 PRK09856 fructoselysine 3-epim 21.8 3.9E+02 0.0085 20.8 7.8 78 45-152 89-172 (275)
443 PRK06849 hypothetical protein; 21.7 4E+02 0.0087 22.2 6.8 34 30-77 3-36 (389)
444 PRK03767 NAD(P)H:quinone oxido 21.7 3.5E+02 0.0076 20.2 6.7 15 150-164 67-81 (200)
445 PRK10966 exonuclease subunit S 21.6 2.5E+02 0.0055 24.0 5.5 27 113-141 24-50 (407)
446 COG2876 AroA 3-deoxy-D-arabino 21.6 4.1E+02 0.009 21.5 6.2 86 41-163 54-139 (286)
447 cd06291 PBP1_Qymf_like Ligand 21.5 3.7E+02 0.008 20.4 8.5 67 115-192 16-84 (265)
448 TIGR01278 DPOR_BchB light-inde 21.5 1.4E+02 0.003 26.3 4.0 9 69-77 24-32 (511)
449 PF00834 Ribul_P_3_epim: Ribul 21.4 1.8E+02 0.0038 22.2 4.1 60 117-178 94-153 (201)
450 PF10431 ClpB_D2-small: C-term 21.3 1.6E+02 0.0034 18.4 3.3 67 108-182 5-72 (81)
451 COG0788 PurU Formyltetrahydrof 21.2 2.3E+02 0.005 22.9 4.7 42 120-161 130-175 (287)
452 PRK00211 sulfur relay protein 21.2 1.2E+02 0.0026 20.9 2.9 38 32-80 2-43 (119)
453 KOG0350 DEAD-box ATP-dependent 21.1 1.4E+02 0.003 26.5 3.8 91 31-158 183-276 (620)
454 PRK08649 inosine 5-monophospha 20.9 5.1E+02 0.011 21.9 7.1 39 121-160 124-162 (368)
455 TIGR02634 xylF D-xylose ABC tr 20.9 4.3E+02 0.0093 20.9 9.0 70 116-191 16-87 (302)
456 cd01977 Nitrogenase_VFe_alpha 20.3 2E+02 0.0044 24.4 4.7 26 138-163 104-131 (415)
457 PF09936 Methyltrn_RNA_4: SAM- 20.3 1.8E+02 0.0038 22.1 3.7 82 107-189 52-138 (185)
458 PRK00125 pyrF orotidine 5'-pho 20.3 4.7E+02 0.01 21.1 7.7 35 32-76 14-58 (278)
459 cd06274 PBP1_FruR Ligand bindi 20.3 3.9E+02 0.0086 20.3 9.8 69 115-191 16-86 (264)
460 cd07402 MPP_GpdQ Enterobacter 20.2 3.2E+02 0.007 20.7 5.5 12 180-191 67-78 (240)
461 PF01207 Dus: Dihydrouridine s 20.1 4.8E+02 0.01 21.2 7.5 75 112-189 109-189 (309)
462 cd00953 KDG_aldolase KDG (2-ke 20.1 4.6E+02 0.0099 20.9 7.0 49 141-192 80-130 (279)
463 PRK04169 geranylgeranylglycery 20.1 3E+02 0.0065 21.6 5.2 47 144-193 24-70 (232)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.94 E-value=8.7e-26 Score=163.87 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=112.5
Q ss_pred CccEEEEEeCCC--HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 30 KKMKVMVAIDES--AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 30 ~~~~Ilv~vd~s--~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+++||||+|+| +.+..++++|..+ |+.. ++++++||+++......... . .....+.+
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~l----------a~~~-~~l~llhv~~~~~~~~~~~~------~---~~~~~~~~ 60 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFL----------AQDD-GVIHLLHVLPGSASLSLHRF------A---ADVRRFEE 60 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHH----------HhcC-CeEEEEEEecCccccccccc------c---cchhhHHH
Confidence 478999999998 4899999999999 8774 69999999987532111000 0 11123445
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
...+..++.++.+.+.+...++++++++..|++.+.|.+++++.++||||||+++++ +.++++||++++++++++||||
T Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVL 139 (142)
T PRK15456 61 HLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVL 139 (142)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEE
Confidence 566667777777776665557788999999999999999999999999999999976 7788999999999999999999
Q ss_pred EEC
Q 046290 188 IVK 190 (197)
Q Consensus 188 iv~ 190 (197)
|||
T Consensus 140 vV~ 142 (142)
T PRK15456 140 VVR 142 (142)
T ss_pred EeC
Confidence 996
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.94 E-value=1.5e-25 Score=162.64 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=110.0
Q ss_pred CccEEEEEeCCCHH--HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 30 KKMKVMVAIDESAE--SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~--s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+++||||+|+|+. +..++++|..+ |+..+++++++||++........ ... .. ... ...+
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~l----------a~~~~~~l~ll~v~~~~~~~~~~-~~~---~~--~~~--~~~~ 62 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAE----------AKIDDAEVHFLTVIPSLPYYASL-GLA---YS--AEL--PAMD 62 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHH----------HhccCCeEEEEEEEccCcccccc-ccc---cc--ccc--hHHH
Confidence 47899999999988 57999999999 88899999999999864321110 000 00 000 0122
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
..++...+.++++.+.+...++++++++..|++.+.|++++++.++||||||++ ++++.++++||++++|+++++||||
T Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~cpVl 141 (144)
T PRK15005 63 DLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAECSVL 141 (144)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCCCCEE
Confidence 344445556666666666667788899999999999999999999999999998 4678888999999999999999999
Q ss_pred EEC
Q 046290 188 IVK 190 (197)
Q Consensus 188 iv~ 190 (197)
+||
T Consensus 142 vVr 144 (144)
T PRK15005 142 VVR 144 (144)
T ss_pred EeC
Confidence 996
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.93 E-value=5.3e-25 Score=160.21 Aligned_cols=141 Identities=28% Similarity=0.409 Sum_probs=118.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+||||+|+|+.+..|++||+.+ |+..+++|+++||.++......... . ........+..++.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~----------a~~~~~~l~ll~v~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~ 62 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDN----------LATKGQTIVLVHVHPPITSIPSSSG-----K---LEVASAYKQEEDKE 62 (146)
T ss_pred CEEEEecCccccHHHHHHHHHh----------ccCCCCcEEEEEeccCcccCCCCcc-----c---hHHHHHHHHHHHHH
Confidence 4999999999999999999999 8889999999999876432211110 0 12233445566677
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhcc-chhHHHhhcCC--CcEEE
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLG-SVSDYCAHHAV--CPIII 188 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~g-s~~~~ll~~~~--~pVli 188 (197)
.++.++++.+.+...++.+++.+..| ++.+.|++++++.++|+||||+++++++.++++| |++++++++++ ||||+
T Consensus 63 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlv 142 (146)
T cd01989 63 AKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYV 142 (146)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEE
Confidence 88888988888888899999888886 8999999999999999999999999999988887 69999999999 99999
Q ss_pred ECC
Q 046290 189 VKP 191 (197)
Q Consensus 189 v~~ 191 (197)
|++
T Consensus 143 v~~ 145 (146)
T cd01989 143 VSK 145 (146)
T ss_pred EeC
Confidence 986
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.92 E-value=1.9e-24 Score=157.00 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=108.5
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
++++||||+|+|+.+..|+++|+.+ |+..+++++++||.+........ .. . ...+...+..
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~l----------A~~~~a~l~llhV~~~~~~~~~~--~~----~---~~~~~~~~~~ 62 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALEL----------ARHNDAHLTLIHIDDGLSELYPG--IY----F---PATEDILQLL 62 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHH----------HHHhCCeEEEEEEccCcchhchh--hh----c---cchHHHHHHH
Confidence 5899999999999999999999999 88999999999998765321110 00 0 0112234445
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
++..++.++++.+.+.. ..++..+..|++.+.|+++|++.++||||||++ ++++.+++ | ++++++++++||||+|
T Consensus 63 ~~~~~~~l~~~~~~~~~--~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 63 KNKSDNKLYKLTKNIQW--PKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHHHHHHHHHHHhcCC--CcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEe
Confidence 55556666666655532 357788888999999999999999999999986 78888877 5 9999999999999999
Q ss_pred CCC
Q 046290 190 KPP 192 (197)
Q Consensus 190 ~~~ 192 (197)
|..
T Consensus 138 ~~~ 140 (142)
T PRK09982 138 PFI 140 (142)
T ss_pred cCC
Confidence 864
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.91 E-value=4.9e-23 Score=149.63 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=99.0
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
++++||||+|+|+.+..|+++|..+ |+.++++|+++||..+.... ... .. ........+..
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~-~~~-~~-------~~~~~~~~~~~ 62 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSM----------ARPYNAKVSLIHVDVNYSDL-YTG-LI-------DVNLGDMQKRI 62 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHH----------HHhhCCEEEEEEEccChhhh-hhh-hh-------hcchHHHHHHH
Confidence 5899999999999999999999999 88889999999994332111 000 00 00111222233
Q ss_pred HHHHHHHHHHHHHHhHhcCCceE-EEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 110 EENSAALLSRALQMCKDKMVKAE-SLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~-~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
.+...+.++ +.....|+... ..+..|++.+.|+++|++.++||||||+++ +.+. . +||++++++++++||||+
T Consensus 63 ~~~~~~~l~---~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgSva~~v~~~a~~pVLv 136 (144)
T PRK15118 63 SEETHHALT---ELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMSSARQLINTVHVDMLI 136 (144)
T ss_pred HHHHHHHHH---HHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHHHHHHHHhhCCCCEEE
Confidence 333333333 33345567653 455689999999999999999999999996 3443 3 579999999999999999
Q ss_pred ECCC
Q 046290 189 VKPP 192 (197)
Q Consensus 189 v~~~ 192 (197)
||..
T Consensus 137 v~~~ 140 (144)
T PRK15118 137 VPLR 140 (144)
T ss_pred ecCC
Confidence 9964
No 6
>PRK11175 universal stress protein UspE; Provisional
Probab=99.91 E-value=2.6e-23 Score=168.62 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=118.5
Q ss_pred ccCCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHH-------HHHHHHHHHHhcccccCCCCCCCCC-CcEEEEEE
Q 046290 5 TVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAE-------SFNALKWALDNLYGIVGFTPEAGGG-GGILTIVH 76 (197)
Q Consensus 5 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~-------s~~al~~a~~l~~~~~~~~~~A~~~-~~~l~lv~ 76 (197)
.+.+.+.||||+++.... ..+++||+|+|+++. +..++++|..+ |+.. +++++++|
T Consensus 132 ~l~~~~~~pvlvv~~~~~------~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~l----------a~~~~~a~l~ll~ 195 (305)
T PRK11175 132 HLLRKCPCPVLMVKDQDW------PEGGKILVAVNVASEEPYHDALNEKLVEEAIDL----------AEQLNHAEVHLVN 195 (305)
T ss_pred HHHhcCCCCEEEeccccc------CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHH----------HhhCcCCceEEEE
Confidence 456778899999997433 236799999999865 36899999999 8888 99999999
Q ss_pred eecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCce-EEEEecCChhhHHHHHHHHcCCCE
Q 046290 77 VQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKA-ESLVLEGDPKDMICQSAEQMHIDL 155 (197)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dl 155 (197)
+++........... ........+..++...+.++++. +..++.. ..++..|++.+.|.+++++.++||
T Consensus 196 v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DL 264 (305)
T PRK11175 196 AYPVTPINIAIELP--------EFDPSVYNDAIRGQHLLAMKALR---QKFGIDEEQTHVEEGLPEEVIPDLAEHLDAEL 264 (305)
T ss_pred EecCcchhcccccc--------ccchhhHHHHHHHHHHHHHHHHH---HHhCCChhheeeccCCHHHHHHHHHHHhCCCE
Confidence 98764321110000 00112222333333333444333 3345543 466778999999999999999999
Q ss_pred EEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 156 LVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 156 lVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
||||+++++++.++++||++++|+++++||||+||+.
T Consensus 265 IVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~ 301 (305)
T PRK11175 265 VILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPD 301 (305)
T ss_pred EEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCC
Confidence 9999999999999999999999999999999999864
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.90 E-value=1.2e-22 Score=147.04 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=106.7
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+++++|||++|++..+..++++|+.+ |+.++++|+++|+++....... . .....+...+.
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~l----------A~~~~a~l~ll~v~~~~~~~~~--~--------~~~~~~~~~~~ 60 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSI----------ARPVNGKISLITLASDPEMYNQ--F--------AAPMLEDLRSV 60 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHH----------HHHhCCEEEEEEEccCcccchh--h--------hHHHHHHHHHH
Confidence 35899999999999999999999999 9889999999999876432110 0 01122333334
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceE-EEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 109 QEENSAALLSRALQMCKDKMVKAE-SLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
..++.++.++++ ....|+... ..+..|++.+.|++++++.++||||||+++++++.+++ |++++++++++||||
T Consensus 61 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVL 135 (142)
T PRK10116 61 MQEETQSFLDKL---IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVL 135 (142)
T ss_pred HHHHHHHHHHHH---HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEE
Confidence 444444444443 344566543 56678999999999999999999999999998888764 899999999999999
Q ss_pred EECCCC
Q 046290 188 IVKPPK 193 (197)
Q Consensus 188 iv~~~~ 193 (197)
+||.+.
T Consensus 136 vv~~~~ 141 (142)
T PRK10116 136 LVPLTG 141 (142)
T ss_pred EEeCCC
Confidence 999754
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.90 E-value=5e-23 Score=146.81 Aligned_cols=140 Identities=33% Similarity=0.479 Sum_probs=104.4
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
|++|||||+|+++.+..++++|+.+ |+..+++|+++||.+.......... .........
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~l----------a~~~~~~i~~l~v~~~~~~~~~~~~-----------~~~~~~~~~ 59 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALEL----------AKRSGAEITLLHVIPPPPQYSFSAA-----------EDEESEEEA 59 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHH----------HHHHTCEEEEEEEEESCHCHHHHHH-----------HHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH----------HHhhCCeEEEEEeeccccccccccc-----------ccccccccc
Confidence 4789999999999999999999999 8888999999999998753211100 000000000
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..................+......+..|++.+.|++++++.++|+||||+++++++.++++||++++|+++++||||||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 60 EEEEQARQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred chhhhhhhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 11010011011222333455677778889999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 046290 190 K 190 (197)
Q Consensus 190 ~ 190 (197)
|
T Consensus 140 ~ 140 (140)
T PF00582_consen 140 P 140 (140)
T ss_dssp E
T ss_pred C
Confidence 7
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.89 E-value=3.8e-22 Score=142.28 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=111.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+||||+|+++.+..++++|..+ |+..+++|+++|+++....... .......+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~l----------a~~~~~~v~ll~v~~~~~~~~~-----------------~~~~~~~~~ 53 (132)
T cd01988 1 RILVPVANPNTARDLLELAAAL----------ARAQNGEIIPLNVIEVPNHSSP-----------------SQLEVNVQR 53 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHH----------hhcCCCeEEEEEEEecCCCCCc-----------------chhHHHHHH
Confidence 5999999999999999999999 8889999999999987542110 011223455
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.++.++.+.+.+...|++++..+.. |++.+.|++++++.++|+||||+++++++.++++||++.+++++++|||++++
T Consensus 54 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 54 ARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 6677888888888888988877764 79999999999999999999999999998888999999999999999999985
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.89 E-value=5.3e-22 Score=160.91 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=115.7
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+++++|||++|+|+.+..|+++|+.+ |+.++++++++|+++...... ... . .........+.
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~l----------A~~~~a~l~ll~v~~~~~~~~-~~~------~-~~~~~~~~~~~ 62 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYL----------AQRNGGKITAFLPIYDFSYEM-TTL------L-SPDEREAMRQG 62 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHH----------HHhcCCCEEEEEeccCchhhh-hcc------c-chhHHHHHHHH
Confidence 35899999999999999999999999 999999999999986532211 000 0 01111222233
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
..+...+.++.+...+...|++++..+. .|++.+.|.+.+++.++||||+|+++.+++.+.++||++++++++++||||
T Consensus 63 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvl 142 (305)
T PRK11175 63 VISQRTAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVL 142 (305)
T ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEE
Confidence 3444556677777666777888888766 589999999999999999999999999999999999999999999999999
Q ss_pred EECCC
Q 046290 188 IVKPP 192 (197)
Q Consensus 188 iv~~~ 192 (197)
+||+.
T Consensus 143 vv~~~ 147 (305)
T PRK11175 143 MVKDQ 147 (305)
T ss_pred Eeccc
Confidence 99974
No 11
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.88 E-value=1.1e-21 Score=138.81 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=102.6
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+||||+|+++.+..++++|+.+ |+..++.|+++||.+..... ..+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~l----------a~~~~~~l~ll~v~~~~~~~------------------------~~~~ 46 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARL----------ADRLKAPWYVVYVETPRLNR------------------------LSEA 46 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHH----------HHHhCCCEEEEEEecCcccc------------------------CCHH
Confidence 5999999999999999999999 88899999999998764310 1122
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~ 190 (197)
.++.++.+.+.+++.++++. .+..|++.+.|.++++++++|+||||+++++++.++++||+++++++++ +|||+|++
T Consensus 47 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 47 ERRRLAEALRLAEELGAEVV-TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHHHHHHHcCCEEE-EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 34456666666666666543 3446789999999999999999999999999999999999999999999 99999985
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.83 E-value=4e-19 Score=125.26 Aligned_cols=130 Identities=38% Similarity=0.609 Sum_probs=111.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+|||++|+++.+..++++|..+ |+..+++++++|+.+....... ...+.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~----------a~~~~~~i~~l~v~~~~~~~~~-----------------~~~~~~~~~ 53 (130)
T cd00293 1 RILVAVDGSEESERALRWAARL----------ARRLGAELVLLHVVDPPPSSAA-----------------ELAELLEEE 53 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEecCCCCcch-----------------hHHHHHHHH
Confidence 5899999999999999999999 8889999999999877542110 223445556
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.++.++.+...+...++.+...+..|+..+.|.+++++.++|+||+|+++++.+.++++|+++++++++++||||++
T Consensus 54 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 54 ARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 66777787777777788898888899889999999999999999999999998888899999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.79 E-value=1.2e-17 Score=121.53 Aligned_cols=148 Identities=31% Similarity=0.456 Sum_probs=119.7
Q ss_pred CCccEEEEEeC-CCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 29 KKKMKVMVAID-ESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 29 ~~~~~Ilv~vd-~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
.++++|++++| +++.+..+++.+..+ +...+..++++++.+............. .........
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~ 66 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVAL----------AKRLGAPLILLVVIDPLEPTALVSVALA------DAPIPLSEE 66 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHH----------HHhcCCeEEEEEEecccccccccccccc------cchhhhhHH
Confidence 45789999999 999999999999999 8888999999999887653322111100 000122234
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCc-eEEEEecCCh-hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 108 SQEENSAALLSRALQMCKDKMVK-AESLVLEGDP-KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~-~~~~~~~g~~-~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
.......+.++.+.+.....++. +...+..|++ .+.|...+++.++|+||||+++++++.++++||++++++++++||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~p 146 (154)
T COG0589 67 ELEEEAEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCP 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCC
Confidence 45566677888888888888887 4888999988 799999999999999999999999999999999999999999999
Q ss_pred EEEECCC
Q 046290 186 IIIVKPP 192 (197)
Q Consensus 186 Vliv~~~ 192 (197)
|+++|+.
T Consensus 147 Vlvv~~~ 153 (154)
T COG0589 147 VLVVRSE 153 (154)
T ss_pred EEEEccC
Confidence 9999975
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.60 E-value=4.3e-14 Score=116.32 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=90.7
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCC--CcEEEEEEeecCCcccccccCCcCcccccChhhHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGG--GGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVR 106 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~--~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
++++|||||+|+|+.+.+|+++|+.+ |+.. +++|+++||.+....... .
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~Aiel----------A~~~g~~AeL~lL~Vv~~~~~~~~---------------~---- 53 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVES----------AEEAAETPTVHLVAAASGRAVDPE---------------G---- 53 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHHH----------HHhcCCCCEEEEEEEecCcccccc---------------h----
Confidence 57999999999999999999999999 8874 699999999886431100 0
Q ss_pred HHHHHHHHHHHHHHHHHhHh------cCCceEEEEec--------CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhcc
Q 046290 107 KSQEENSAALLSRALQMCKD------KMVKAESLVLE--------GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLG 172 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~------~~v~~~~~~~~--------g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~g 172 (197)
+......++.++++.+.++. .|+++++.+.. |++++.|+++|+++++|+||||..-.-+-..-++.
T Consensus 54 ~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~ 133 (357)
T PRK12652 54 QDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQ 133 (357)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccc
Confidence 11222333444444444443 58888888865 89999999999999999999997532221122333
Q ss_pred chhHHHhhcCCCcEEEEC
Q 046290 173 SVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 173 s~~~~ll~~~~~pVliv~ 190 (197)
+. +.-+.++.|.+=.-|
T Consensus 134 ~~-~~~~~~~~~~~~~~~ 150 (357)
T PRK12652 134 PL-ERELARAGITYEEAP 150 (357)
T ss_pred hH-HHHHHhcCCceecCC
Confidence 33 444555566554443
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.39 E-value=5.7e-12 Score=115.60 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=98.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.++||||+++++.+..++++|.++ |+.++++++++||..+.... ..
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rl----------A~~~~a~~~~l~V~~~~~~~------------------------~~ 295 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARL----------AARLGSVWHAVYVETPRLHR------------------------LP 295 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHH----------HHhcCCCEEEEEEecCCcCc------------------------CC
Confidence 578999999999999999999999 99999999999997653210 00
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv 189 (197)
......+.+..+.+++.|.++. .+..+|+++.|+++|++++++.||||.++++++ ++.||+++++++.++ ++|.||
T Consensus 296 ~~~~~~l~~~~~lA~~lGa~~~-~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 296 EKKRRAILSALRLAQELGAETA-TLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HHHHHHHHHHHHHHHHcCCEEE-EEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEE
Confidence 1122223333356777777643 233458999999999999999999999988765 557899999999998 999999
Q ss_pred CCC
Q 046290 190 KPP 192 (197)
Q Consensus 190 ~~~ 192 (197)
+..
T Consensus 373 ~~~ 375 (895)
T PRK10490 373 ALD 375 (895)
T ss_pred eCC
Confidence 754
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.32 E-value=2.9e-11 Score=106.43 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=108.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
..+||||+++++.+...+++|.++ |...+++++++||..+.... ..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~Rl----------A~~~~a~~~av~v~~~~~~~------------------------~~ 293 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARL----------ASRLHAKWTAVYVETPELHR------------------------LS 293 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHH----------HHHhCCCeEEEEEecccccc------------------------cc
Confidence 479999999999999999999999 99999999999997775321 22
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv 189 (197)
+.....+....+.+++.|-++.+ +..++++++|.++|+.+++.-||+|.+.++.|...|.|+.++++++..+ +.|.++
T Consensus 294 ~~~~~~l~~~~~Lae~lGae~~~-l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 294 EKEARRLHENLRLAEELGAEIVT-LYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEE-EeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEe
Confidence 34556677777888887765533 3346999999999999999999999999999999999999999999997 999999
Q ss_pred CCCCC
Q 046290 190 KPPKE 194 (197)
Q Consensus 190 ~~~~~ 194 (197)
+.+..
T Consensus 373 ~~~~~ 377 (890)
T COG2205 373 ALDAP 377 (890)
T ss_pred eCCCC
Confidence 86543
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.43 E-value=1.3e-06 Score=57.52 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=72.5
Q ss_pred EEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHH
Q 046290 34 VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENS 113 (197)
Q Consensus 34 Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
|+|+++++..|..++.++.+. + ..+..++.+|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~----------~-~~~~~~~~~~~~----------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL----------K-SGGPEVVALVVV----------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH----------H-hcCCCEEEEEeH-----------------------------------
Confidence 689999999999999999998 5 457788888881
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhcc-chhHHHhhcCCCcEEE
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLG-SVSDYCAHHAVCPIII 188 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~g-s~~~~ll~~~~~pVli 188 (197)
...+.+.+.+++.++|+|++|++........+.+ +++..+++.++|||+.
T Consensus 35 -------------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 -------------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred -------------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 5667888889999999999999988877777777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.64 E-value=0.00084 Score=61.80 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=92.8
Q ss_pred cCCCCCCcccccccccCC---CCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCc
Q 046290 6 VPGGSGSAMLQSKEEEEP---KMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQ 82 (197)
Q Consensus 6 ~~~~~~~~vl~~~~~~~~---~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~ 82 (197)
+..++.|+|-+.=+.-.. ..+......+|.+..=+++.++.||.||.++ |++.+..++++|..+...
T Consensus 602 VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rm----------a~~p~v~lTVirf~~~~~ 671 (832)
T PLN03159 602 VLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRM----------SEHPGITLTVMRFIPGED 671 (832)
T ss_pred HHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHH----------hcCCCeEEEEEEEEcccc
Confidence 455677874443332211 1111133569999999999999999999999 999999999999986543
Q ss_pred cccccc-CCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhc-CCce-EEEEecC-ChhhHHHHHHHHcCCCEEEE
Q 046290 83 RFVLPA-LSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDK-MVKA-ESLVLEG-DPKDMICQSAEQMHIDLLVV 158 (197)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~v~~-~~~~~~g-~~~~~I~~~a~~~~~dllVl 158 (197)
...... ......... ........++.++..++.+++++...... .+.+ |..+..| +....|....+ ++||+|+
T Consensus 672 ~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~--~ydL~iV 748 (832)
T PLN03159 672 AAPTASQPASSPSDPR-IPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDS--AHDLFIV 748 (832)
T ss_pred cccccccccccccccc-cccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhc--cCcEEEE
Confidence 211000 000000000 00000001223334556666666655432 2323 2333344 45566666554 6999999
Q ss_pred ccCCC--C----chhhhh----ccchhHHHhhc---CCCcEEEEC
Q 046290 159 GSRGL--G----KIKRAF----LGSVSDYCAHH---AVCPIIIVK 190 (197)
Q Consensus 159 G~~~~--~----~~~~~~----~gs~~~~ll~~---~~~pVliv~ 190 (197)
|.++. + ++.+|. +|.+-+-+... +...||||.
T Consensus 749 Gr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQ 793 (832)
T PLN03159 749 GRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQ 793 (832)
T ss_pred ecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEE
Confidence 97532 1 222322 45555544433 246788874
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.38 E-value=0.0023 Score=59.05 Aligned_cols=145 Identities=11% Similarity=0.165 Sum_probs=85.7
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCccc---ccccCCcCcccccChhhHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRF---VLPALSTSSAFYATSSMVESVR 106 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
..-|||+|+...++....+..+-... + .++....++++|+++..... ...+..... ......
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~---~-----t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~-------~~~~~~ 521 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASH---P-----TKRSPICIYVLHLVELTGRASAMLIVHNTRKS-------GRPALN 521 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcC---C-----CCCCCceEEEEEEEeecCCCccceeeeecccc-------cccccc
Confidence 35689999998877777766543321 1 34556799999998865321 111111000 000000
Q ss_pred HHHHHHHHHHHHHHHHHhHh-cCCceEEEEe---cCChhhHHHHHHHHcCCCEEEEccCCCCchhh------hhccchhH
Q 046290 107 KSQEENSAALLSRALQMCKD-KMVKAESLVL---EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR------AFLGSVSD 176 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~---~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~------~~~gs~~~ 176 (197)
+ .....+..+..+....+. .++.++.... ..+..+.|+..|++.++++||++-+.+....+ -.++.+-+
T Consensus 522 ~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~ 600 (832)
T PLN03159 522 R-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQ 600 (832)
T ss_pred c-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHH
Confidence 0 011122333333333322 2455553332 23789999999999999999999986433222 24567789
Q ss_pred HHhhcCCCcEEEEC
Q 046290 177 YCAHHAVCPIIIVK 190 (197)
Q Consensus 177 ~ll~~~~~pVliv~ 190 (197)
++++++||+|-|.=
T Consensus 601 ~VL~~ApCsVgIlV 614 (832)
T PLN03159 601 NVLANAPCSVGILV 614 (832)
T ss_pred HHHccCCCCEEEEE
Confidence 99999999998873
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.15 E-value=0.01 Score=44.71 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+|+|+++++..|..++..+... ++..+.++.++|+..... ..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~----------~~~~~~~v~~v~vd~g~~----------------------------~~ 42 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKL----------QPKLKIRLIAAHVDHGLR----------------------------PE 42 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH----------HHHcCCCEEEEEeCCCCC----------------------------hh
Confidence 5899999999999999988887 555567799999854421 01
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC---------Chh--------hHHHHHHHHcCCCEEEEccCCCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG---------DPK--------DMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g---------~~~--------~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
..+..+.+...++..|+++....... +.. ..+.+.+++++++.|+.|.+...
T Consensus 43 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 43 SDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 22345556667777787765543321 122 57788999999999999987543
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.56 E-value=0.034 Score=41.68 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=60.5
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+|+|++.|+..|..++.....+ .+..+.++.++||-..... .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~----------~~~~~~~~~~~~vdh~~~~----------------------------~ 42 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKEL----------RRRNGIKLIAVHVDHGLRE----------------------------E 42 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH----------HTTTTTEEEEEEEE-STSC----------------------------C
T ss_pred CEEEEEcCCHHHHHHHHHHHHH----------HHhcCCCeEEEEEecCCCc----------------------------c
Confidence 6999999999999999999999 7777889999999655321 1
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEec-----C-Ch--------hhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLE-----G-DP--------KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~-----g-~~--------~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.....+.+.+.|+..|+++...... + +. -+.+.+.|.+.+++.|++|.+.
T Consensus 43 s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 43 SDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred cchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 2233455667778788877655444 1 11 2567788999999999999875
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.42 E-value=0.065 Score=40.01 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=65.0
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+|+|+++++..|..++..+... ....+.++.++|+..... ..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~----------~~~~~~~v~~v~id~~~~----------------------------~~ 42 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSEL----------KPRLGLRLVAVHVDHGLR----------------------------PE 42 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH----------HHHcCCcEEEEEecCCCC----------------------------ch
Confidence 5899999999999999999888 333356899999954321 01
Q ss_pred HHHHHHHHHHHhHhcCCceEEE--E-ecCC-h----------hhHHHHHHHHcCCCEEEEccCCCC
Q 046290 113 SAALLSRALQMCKDKMVKAESL--V-LEGD-P----------KDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~--~-~~g~-~----------~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
..+..+.+.+.+...|+++... . ..+. . ...+.++|++++++.|+.|.+...
T Consensus 43 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 43 SDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 1345555666777778776654 1 1111 1 156778899999999999987543
No 23
>PRK12342 hypothetical protein; Provisional
Probab=96.04 E-value=0.072 Score=42.32 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSR 119 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (197)
-++....|++.|+++ . ..+.+++++++-++.. ....++.+
T Consensus 33 iNp~D~~AlE~AlrL----------k-~~g~~Vtvls~Gp~~a-----------------------------~~~~l~r~ 72 (254)
T PRK12342 33 ISQFDLNAIEAASQL----------A-TDGDEIAALTVGGSLL-----------------------------QNSKVRKD 72 (254)
T ss_pred CChhhHHHHHHHHHH----------h-hcCCEEEEEEeCCChH-----------------------------hHHHHHHH
Confidence 468899999999999 6 5689999999855521 01112232
Q ss_pred HHHHhHhcCCceEEEEecC-Ch---hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DP---KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
+..+=.++++-+......| |+ +..|..++++.++|||+.|.....+.. |.+.-.+......|.
T Consensus 73 alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg~P~ 139 (254)
T PRK12342 73 VLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQLPV 139 (254)
T ss_pred HHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhCCCc
Confidence 3333223333332222223 54 789999999989999999987544332 333344444444443
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=95.82 E-value=0.097 Score=41.63 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCC-cEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAGGGG-GILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLS 118 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~~~~-~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (197)
-++....|++.|+++ ..+.+ .+++++.+-++.. .....+.
T Consensus 34 iN~~D~~AlE~Alrl----------ke~~~g~~Vtvvs~Gp~~a-----------------------------~~~~~lr 74 (256)
T PRK03359 34 ISQYDLNAIEAACQL----------KQQAAEAQVTALSVGGKAL-----------------------------TNAKGRK 74 (256)
T ss_pred cChhhHHHHHHHHHH----------hhhcCCCEEEEEEECCcch-----------------------------hhHHHHH
Confidence 468889999999999 66554 8999999865531 1112333
Q ss_pred HHHHHhHhcCCceEEEEecC-C---hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 119 RALQMCKDKMVKAESLVLEG-D---PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g-~---~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
++..+=.++++-+...-..| | .+..|..++++.++|||+.|.....+-. |.+.-.+......|
T Consensus 75 ~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~t----gqvg~~lAe~Lg~P 141 (256)
T PRK03359 75 DVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYA----QQVGLLVGEILNIP 141 (256)
T ss_pred HHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCC----CcHHHHHHHHhCCC
Confidence 33333333333332222223 3 5788999999999999999987644332 33333444444444
No 25
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=95.13 E-value=0.19 Score=39.97 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCC-CCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAG-GGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLS 118 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~-~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (197)
-++.+..|++.|+++ .. ..+.+++++++-++. .++.+.
T Consensus 35 in~~D~~AvEeAlrL----------ke~~~~~eV~vlt~Gp~~-------------------------------a~~~lr 73 (260)
T COG2086 35 INPFDLNAVEEALRL----------KEKGYGGEVTVLTMGPPQ-------------------------------AEEALR 73 (260)
T ss_pred cChhhHHHHHHHHHh----------hccCCCceEEEEEecchh-------------------------------hHHHHH
Confidence 357889999999999 66 689999999995552 222332
Q ss_pred HHHHHhHhcCCceEEEEe----cC----ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 119 RALQMCKDKMVKAESLVL----EG----DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~----~g----~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
. +-..|.+--.++. .+ ..+..|...+++.+.|||++|...-.+-. |.+...+......|.+
T Consensus 74 ~----aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t----~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 74 E----ALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT----GQVGPLLAELLGWPQV 142 (260)
T ss_pred H----HHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCc----cchHHHHHHHhCCcee
Confidence 2 2334543333333 23 25889999999999999999987543322 3333444444444443
No 26
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.36 Score=38.93 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=64.6
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
.+|+|++.|+..|..++.....+ ... ..+.++||.......
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l----------~~~--~~~~a~~Vd~~~~~~--------------------------- 62 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKEL----------GRR--IEVEAVHVDHGLRGY--------------------------- 62 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHh----------ccC--ceEEEEEecCCCCCc---------------------------
Confidence 69999999999999999988888 332 699999996654310
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEec---C-C------h--------hhHHHHHHHHcCCCEEEEccCCCCch----hhh
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLE---G-D------P--------KDMICQSAEQMHIDLLVVGSRGLGKI----KRA 169 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~---g-~------~--------~~~I~~~a~~~~~dllVlG~~~~~~~----~~~ 169 (197)
.....+.....|...++.....-.. + . + -..+.+.|++.++|.|+.|.+..... .++
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l 141 (298)
T COG0037 63 -SDQEAELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNL 141 (298)
T ss_pred -cchHHHHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHH
Confidence 1222333444455555422211111 1 0 1 24567789999999999998764433 334
Q ss_pred hccch
Q 046290 170 FLGSV 174 (197)
Q Consensus 170 ~~gs~ 174 (197)
+.|+.
T Consensus 142 ~~g~~ 146 (298)
T COG0037 142 LRGSG 146 (298)
T ss_pred HcCcH
Confidence 44554
No 27
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.79 E-value=0.51 Score=35.01 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=58.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCC--CcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGG--GGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~--~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
+|+|++.+...|..++..+..+ .... +.+++++|+......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~----------~~~~~~~~~~~~~~~d~~~~~--------------------------- 43 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKL----------QRRYPYGFELEALTVDEGIPG--------------------------- 43 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHH----------HhhcCCCeEEEEEEEECCCCC---------------------------
Confidence 5899999999999998888877 3333 568888888544221
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-------------C---------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-------------G---------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-------------g---------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
........+.+.+...|+++...... + .....+.+.+++++++.|+.|.+.
T Consensus 44 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 44 -YRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred -CcHHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 00112233344455556655433221 0 013566778999999999999875
No 28
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=94.29 E-value=0.6 Score=34.21 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=56.7
Q ss_pred EEEEeCC-----CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 34 VMVAIDE-----SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 34 Ilv~vd~-----s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
|||-++- ++.+..++..|.++ ++..+.+++++.+-+...
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~L----------a~~~g~~v~av~~G~~~~-------------------------- 45 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRL----------AEALGGEVTAVVLGPAEE-------------------------- 45 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHH----------HHCTTSEEEEEEEETCCC--------------------------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHH----------HhhcCCeEEEEEEecchh--------------------------
Confidence 5565553 48899999999999 888899999998753121
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEecC--------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLEG--------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g--------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
..+.+++.+..+|.+--+.+... ...+.|.+.+++.++|+|++|...
T Consensus 46 -------~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 46 -------AAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp -------HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred -------hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 11223334455666443444332 146789999999999999999754
No 29
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.21 E-value=2.1 Score=36.97 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=70.6
Q ss_pred cEEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 32 MKVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 32 ~~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
..||+=. |..-....||..|+.. |...+.+|..|++.++..... ....
T Consensus 23 ~~vL~WFRrDLRl~DN~aL~~A~~~----------a~~~~~~vl~vyi~dp~~~~~--------------------~~~r 72 (454)
T TIGR00591 23 GVVVYWMSRDQRVQDNWALIAAQTL----------ALKKKLPLHVCFCLVDFFLAA--------------------TRRH 72 (454)
T ss_pred CeEEEEecCchhccCCHHHHHHHHH----------HHHcCCCEEEEEEeCCCcccc--------------------cHHH
Confidence 3455555 4456667888888877 555567899999988753210 1233
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchh
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIK 167 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~ 167 (197)
..-..+.|..+.+.+++.|+.. .+..|++.+.|.+++++.+++.|+.... .+...
T Consensus 73 ~~Fl~esL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~i~~V~~~~~-~~~~~ 127 (454)
T TIGR00591 73 YFFMLGGLDEVANECERLIIPF--HLLDGPPKELLPYFVDLHAAAAVVTDFS-PLRQP 127 (454)
T ss_pred HHHHHHHHHHHHHHHHHcCCce--EEeecChHHHHHHHHHHcCCCEEEEecc-cCcHH
Confidence 4455556666677777766644 5668999999999999999999999764 34433
No 30
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=93.15 E-value=1.1 Score=33.72 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
++||++++.++..+.++.++.-.+ .+ .+.+++++-.
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L----------~~-~g~~V~vv~T 36 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQL----------TK-RGYQVTVLMT 36 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHH----------HH-CCCEEEEEEC
Confidence 468999999999999988888777 32 3677776643
No 31
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=93.05 E-value=2 Score=31.44 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHH
Q 046290 42 AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRAL 121 (197)
Q Consensus 42 ~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (197)
-....||..|+.. +.++..+++.++...... .. ......-..+.+..+.
T Consensus 11 l~DN~aL~~A~~~--------------~~~v~~vfv~d~~~~~~~--~~---------------~~~r~~Fl~~sL~~L~ 59 (165)
T PF00875_consen 11 LHDNPALHAAAQN--------------GDPVLPVFVFDPEEFHPY--RI---------------GPRRRRFLLESLADLQ 59 (165)
T ss_dssp STT-HHHHHHHHT--------------TSEEEEEEEE-HHGGTTC--SS---------------CHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHc--------------CCCeEEEEEecccccccc--cC---------------cchHHHHHHHHHHHHH
Confidence 3456677777776 789999999988621100 00 1233344555666666
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+.+...|+ ...++.|++.+.|.+++++.+++.|+.... .+...... -....+.+.+..+.+..+..
T Consensus 60 ~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~r-d~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 60 ESLRKLGI--PLLVLRGDPEEVLPELAKEYGATAVYFNEE-YTPYERRR-DERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHHHHTTS---EEEEESSHHHHHHHHHHHHTESEEEEE----SHHHHHH-HHHHHHHHHHTTSEEEEE--
T ss_pred HHHHhcCc--ceEEEecchHHHHHHHHHhcCcCeeEeccc-cCHHHHHH-HHHHHHHHHhcceEEEEECC
Confidence 67776665 567788999999999999999999998754 33333322 22334455556677766643
No 32
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=92.79 E-value=2.7 Score=35.25 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=28.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
.++|+|++.+...|..++..+.+. +.+++.+|+..
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~--------------G~~V~~v~~~~ 39 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA--------------GYEVTGVTFRF 39 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc--------------CCeEEEEEEec
Confidence 568999999999998877766655 67899988853
No 33
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.74 E-value=2.5 Score=33.51 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=59.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCC--CCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGG--GGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~--~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
..+|+|++.++..|...+..+..+ .+. .+-++..+|+...... . .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l----------~~~~~~~~~l~av~vd~g~~~-----------------~----~~- 76 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNL----------QKRAPINFELVAVNLDQKQPG-----------------F----PE- 76 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHH----------HHhCCCCeEEEEEEecCCCCC-----------------C----CH-
Confidence 568999999999999988888776 332 2357888887433210 0 00
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEec-----------CC---------hhhHHHHHHHHcCCCEEEEccCCC
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLE-----------GD---------PKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-----------g~---------~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
+ .+.+.|+..|+++...... +. -...+.+.|++.++|.|++|.+..
T Consensus 77 ------~---~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 77 ------H---VLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred ------H---HHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 0 1345677778766543221 11 114566789999999999998753
No 34
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=92.61 E-value=1.8 Score=34.19 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=55.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.++++|++.+...|..++..+.+. +.++..+|+..+...
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~--------------g~~v~av~~~~~~~~--------------------------- 50 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA--------------GTEVLAITVVSPSIS--------------------------- 50 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh--------------CCCEEEEEecCCCCC---------------------------
Confidence 578999999999999888877665 667888988543110
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec------------------CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE------------------GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~------------------g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...++.+.+.++..|++....-.. ......+.++|++.+++.|+.|.+.
T Consensus 51 ---~~e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 51 ---PRELEDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred ---HHHHHHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 011223344445555544322211 1224456678999999999999753
No 35
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=92.35 E-value=1.4 Score=32.23 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-Chh---hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPK---DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~---~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ... ..+.+.+++.+++++|.++.....+.. -+...+..||+-||.
T Consensus 13 ~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg--------vva~~t~~PVIgvP~ 84 (156)
T TIGR01162 13 TMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG--------MVAALTPLPVIGVPV 84 (156)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH--------HHHhccCCCEEEecC
Confidence 45566677788899988888764 333 444444555678998888766554443 255578999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 85 ~~ 86 (156)
T TIGR01162 85 PS 86 (156)
T ss_pred Cc
Confidence 54
No 36
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=92.30 E-value=0.56 Score=33.03 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=62.4
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
+||++++.++.....+.++...+ .+. +.+++++.- +
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L----------~~~-g~~v~vv~S---------------------------------~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRL----------KRA-GWEVRVVLS---------------------------------P 36 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHH----------HTT-TSEEEEEES---------------------------------H
T ss_pred CEEEEEEECHHHHHHHHHHHHHH----------hhC-CCEEEEEEC---------------------------------C
Confidence 58999999999988888888888 333 778777644 1
Q ss_pred HHHHHHHHHHHHhHhcCCceEEE---EecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhh---ccchhHHHhhcC---
Q 046290 112 NSAALLSRALQMCKDKMVKAESL---VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAF---LGSVSDYCAHHA--- 182 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~---~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~---~gs~~~~ll~~~--- 182 (197)
.+.+.+.... ..+-++... ...++....+- ..+ .+|++|+.--..+.+.++- -.+....++..+
T Consensus 37 ~A~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~-~~~--~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~ 109 (129)
T PF02441_consen 37 SAERFVTPEG----LTGEPVYTDWDTWDRGDPAEHIE-LSR--WADAMVVAPATANTLAKIANGIADNLLTRVALAALKE 109 (129)
T ss_dssp HHHHHSHHHG----HCCSCEECTHCTCSTTTTTCHHH-HHH--TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHT
T ss_pred cHHHHhhhhc----cccchhhhccccCCCCCCcCccc-ccc--cCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccC
Confidence 1222222211 111122111 11233334433 355 6999999775544444433 335566666666
Q ss_pred CCcEEEECCC
Q 046290 183 VCPIIIVKPP 192 (197)
Q Consensus 183 ~~pVliv~~~ 192 (197)
+.||+++|..
T Consensus 110 ~~pvvi~P~m 119 (129)
T PF02441_consen 110 GKPVVIAPAM 119 (129)
T ss_dssp TCGEEEEEEE
T ss_pred CCCeEEEEeC
Confidence 8999999863
No 37
>PRK13820 argininosuccinate synthase; Provisional
Probab=92.28 E-value=3.1 Score=35.32 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=29.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCc-EEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGG-ILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~-~l~lv~v~~~ 80 (197)
+++|+|++.+...|..++.++... ++. +++.+|+...
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~-------------~g~~~Viav~vd~g 39 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK-------------YGYDEVITVTVDVG 39 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh-------------cCCCEEEEEEEECC
Confidence 579999999999999988886544 254 8999998543
No 38
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=91.95 E-value=1.3 Score=32.24 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-Chh---hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPK---DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~---~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++.+.+.+.|+.++..+.+. ..- .+..+.+++.++..||-|+.+...+.+ - +...++.||+-||-
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG----m----vAa~T~lPViGVPv 88 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG----M----VAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch----h----hhhcCCCCeEeccC
Confidence 34455566677799999888875 344 444455677788889999877555543 3 44477999999986
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
+
T Consensus 89 ~ 89 (162)
T COG0041 89 Q 89 (162)
T ss_pred c
Confidence 5
No 39
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=91.39 E-value=2.6 Score=36.28 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=47.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCC-CCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEA-GGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A-~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
..+|+|++.|+..|...+.....+ . ...+.+++++||-....
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~----------~~~~~~~~l~a~hvnhglr--------------------------- 57 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQW----------RTENPGVTLRAIHVHHGLS--------------------------- 57 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHH----------HHhcCCCeEEEEEEeCCCC---------------------------
Confidence 468999999999999988877766 3 23467999999954421
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEe
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVL 136 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~ 136 (197)
....+..+.+.+.|+..|+++...-.
T Consensus 58 -~~s~~~~~~~~~~~~~l~i~~~~~~~ 83 (436)
T PRK10660 58 -PNADSWVKHCEQVCQQWQVPLVVERV 83 (436)
T ss_pred -cchHHHHHHHHHHHHHcCCcEEEEEE
Confidence 12233345567788888887765433
No 40
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=91.04 E-value=2 Score=31.32 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=43.2
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHc---CCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQM---HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~---~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...+++.|+.++..+..- ...+.+.+++++. +++++|.++.....+.. -+...+..||+-||.
T Consensus 15 ~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg--------vva~~t~~PVIgvP~ 86 (150)
T PF00731_consen 15 IAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPG--------VVASLTTLPVIGVPV 86 (150)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHH--------HHHHHSSS-EEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchh--------hheeccCCCEEEeec
Confidence 44566667777888888888775 4556666666554 57888887755444433 245577999999986
Q ss_pred CCC
Q 046290 192 PKE 194 (197)
Q Consensus 192 ~~~ 194 (197)
...
T Consensus 87 ~~~ 89 (150)
T PF00731_consen 87 SSG 89 (150)
T ss_dssp -ST
T ss_pred Ccc
Confidence 543
No 41
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=90.78 E-value=2.8 Score=31.39 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEE
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVH 76 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~ 76 (197)
+||++++.++..+..+.++.-.+ - +.+.+++++.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L----------~-~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQL----------T-KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHH----------H-HCCCEEEEEE
Confidence 58999999999988888766666 2 2367777664
No 42
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=90.54 E-value=4 Score=30.83 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=54.5
Q ss_pred EEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHH
Q 046290 34 VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENS 113 (197)
Q Consensus 34 Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
|+|++.++..|..++..+... . +.++..+|+..... .
T Consensus 1 vvva~SGG~DS~~ll~ll~~~----------~---~~~v~~v~vd~g~~------------------------------~ 37 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDA----------L---GDRVLAVTATSPLF------------------------------P 37 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHH----------h---CCcEEEEEeCCCCC------------------------------C
Confidence 588999999998888877666 1 22788888854321 0
Q ss_pred HHHHHHHHHHhHhcCCceEEEEec--------C-----------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLE--------G-----------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~--------g-----------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+.+...|+..|++....-.. + -....+.+++++.+++.|+.|.+.
T Consensus 38 ~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 38 RRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 122334445556666655433221 0 123456678999999999999764
No 43
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=90.33 E-value=5.4 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
+++|.+.+...|..++..+... +.++..+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~--------------~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE--------------GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc--------------CCcEEEEEEEC
Confidence 5899999999999888777665 55788888854
No 44
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.33 E-value=5.2 Score=34.02 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=28.5
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.++|++++.++..+..+.++.-.+ -+ .+.+++++..
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L----------~~-~g~~V~vv~T 41 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRL----------RK-AGADVRVVMT 41 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHH----------Hh-CCCEEEEEEC
Confidence 4689999999999888888887777 22 3677777653
No 45
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=90.15 E-value=3.6 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=29.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+++|++++.++..+-++.+..-.+ .+..+.+++++..
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L----------~k~~g~~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVL----------RDVGEIETHLVIS 37 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHH----------HhhcCCeEEEEEC
Confidence 468999999999999999988888 4434677777654
No 46
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=90.00 E-value=1.9 Score=29.13 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.0
Q ss_pred CChhhHHHHHHHHcCCCEEEEccC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
-.-.+.|.++|+++++|++|+|..
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 355789999999999999999964
No 47
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=89.20 E-value=6 Score=34.39 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSR 119 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (197)
.--....||..|+.. +.+|..+++.++....... .-.....-.-+-+..
T Consensus 11 LRl~DN~AL~~A~~~--------------~~~vl~vfi~dp~~~~~~~-----------------~~~~r~~Fl~esL~~ 59 (471)
T TIGR03556 11 LRLSDNIGLAAARQQ--------------SAKVVGLFCLDPNILQADD-----------------MAPARVAYLIGCLQE 59 (471)
T ss_pred CCcchHHHHHHHHhc--------------CCCEEEEEEEchhhhcccc-----------------CCHHHHHHHHHHHHH
Confidence 334456677777765 5679999998874311000 001112344556666
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+.+.+++.|+.. .+..|++.+.|.+++++.+++.|+.-..
T Consensus 60 L~~~L~~~G~~L--~v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 60 LQQRYQQAGSQL--LILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHCCCCe--EEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 666777777654 5668999999999999999999998654
No 48
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=89.00 E-value=4.8 Score=35.02 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
...++|++++.++..+.++.++.-.+ .+ .+.+++++..
T Consensus 68 l~~k~IllgVtGsIAayka~~lvr~L----------~k-~G~~V~VvmT 105 (475)
T PRK13982 68 LASKRVTLIIGGGIAAYKALDLIRRL----------KE-RGAHVRCVLT 105 (475)
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHH----------Hh-CcCEEEEEEC
Confidence 34689999999999999999988888 32 3778777754
No 49
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=88.94 E-value=8.5 Score=29.22 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=63.1
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCccc-ccccCCcCcccccChhhHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRF-VLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
+++|.+.+...|.-++.++.+. +-++..+++..+.... ...+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~--------------G~~v~~l~~~~~~~~~~~~~h----------------------- 43 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE--------------GHEVVALLNLTPEEGSSMMYH----------------------- 43 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc--------------CCEEEEEEEEecCCCCccccc-----------------------
Confidence 4789999999999999888887 6677777765443210 0000
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC---Ch----hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG---DP----KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g---~~----~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
...++.+...++..|++.......+ +. .+.|.+.+++ +++.||-|..... ..+..+.++.+++--.+-.
T Consensus 44 --~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd-~~~~~~e~~~~~~gl~~~~ 119 (194)
T cd01994 44 --TVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILSE-YQRTRVERVCERLGLEPLA 119 (194)
T ss_pred --ccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccccH-HHHHHHHHHHHHcCCEEEe
Confidence 0122344555666677765443222 22 3344444444 6999999986532 2332333444443333334
Q ss_pred cEE
Q 046290 185 PII 187 (197)
Q Consensus 185 pVl 187 (197)
|+|
T Consensus 120 PLW 122 (194)
T cd01994 120 PLW 122 (194)
T ss_pred ccc
Confidence 544
No 50
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=88.93 E-value=5.3 Score=34.15 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHH
Q 046290 39 DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLS 118 (197)
Q Consensus 39 d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (197)
|.--....||..|+.. +.+|..|+++++........+.. .........-..+.+.
T Consensus 10 DLRl~DN~aL~~A~~~--------------~~~vl~vfi~dp~~~~~~~~~~~-----------~~~~~~r~~Fl~esL~ 64 (429)
T TIGR02765 10 DLRVHDNPALYKASSS--------------SDTLIPLYCFDPRQFKLTHFFGF-----------PKTGPARGKFLLESLK 64 (429)
T ss_pred CCccccHHHHHHHHhc--------------CCeEEEEEEECchHhcccccccc-----------CCCCHHHHHHHHHHHH
Confidence 3344556778888776 44799999988743210000000 0001223344555666
Q ss_pred HHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 119 RALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
.+.+.+++.|+.. .+..|++.+.|.+++++.+++.|+.-..
T Consensus 65 ~L~~~L~~~g~~L--~v~~G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 65 DLRTSLRKLGSDL--LVRSGKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHcCCCe--EEEeCCHHHHHHHHHHHhCCCEEEEecc
Confidence 6677777766654 5668999999999999999999999754
No 51
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.79 E-value=8.7 Score=29.17 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=62.2
Q ss_pred EEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHH
Q 046290 34 VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENS 113 (197)
Q Consensus 34 Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
++|.-.+.=-.-.+.+.|.++ ... +..+.++..-....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~----------~~~-~~~v~lis~D~~R~------------------------------- 42 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARL----------KLK-GKKVALISADTYRI------------------------------- 42 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHH----------HHT-T--EEEEEESTSST-------------------------------
T ss_pred EEECCCCCchHhHHHHHHHHH----------hhc-cccceeecCCCCCc-------------------------------
Confidence 455566666667778888888 545 78888887633221
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH---HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI---CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I---~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
...++++..++..|+.+.......++.+.+ ++..+..++|+|++-+.|++......+....+.+-.-.+..+++|
T Consensus 43 -ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LV 120 (196)
T PF00448_consen 43 -GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLV 120 (196)
T ss_dssp -HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred -cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEE
Confidence 233444445555455543311122454443 445556689999999999887665554444432222235555554
No 52
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=88.51 E-value=7.5 Score=31.76 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=59.0
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
+.++++++.++..|...+..+...+.. .+.++.++|+-.....
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~----------~~~~~~vl~iDTG~~F--------------------------- 69 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYP----------GKLPFPLLHVDTGWKF--------------------------- 69 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcc----------cCCCeeEEEEeCCCCC---------------------------
Confidence 568999999999999999988877422 2457888988544210
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEe-----cC------C--------hhhHHHHHHHHcCCCEEEEccCCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVL-----EG------D--------PKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~-----~g------~--------~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
.+.++-..+.++..|+++..... .| + -...+.++++++++|.++.|.+..
T Consensus 70 ---pEt~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD 138 (301)
T PRK05253 70 ---PEMIEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD 138 (301)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 01111122234555666544321 11 0 125677888889999999998753
No 53
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=87.00 E-value=13 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=25.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
.++|+|++.++..|..++...... +.++..+|+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~--------------G~eV~av~~~ 38 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQ--------------GYEIVGVTMR 38 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHc--------------CCcEEEEEec
Confidence 469999999998888766643333 6678888883
No 54
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=86.64 E-value=9.7 Score=27.29 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+|+|++.++..|..++..+... .... .++.++|+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~----------~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKA----------LPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHh----------cccc-cCceEEEeCCC
Confidence 4899999999999999888887 2211 37888887443
No 55
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=86.57 E-value=11 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
.+.|.+.+++.++|+|++|....+
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIG 103 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccc
Confidence 578888888889999999987653
No 56
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=86.39 E-value=3.7 Score=34.08 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=47.3
Q ss_pred CceEEEEecCC---------hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 129 VKAESLVLEGD---------PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 129 v~~~~~~~~g~---------~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.++...+.+|| +.+.|+.++++.++|++|.|-.=..+--....|.++..+-.+..+|++.-
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 45555566664 46889999999999999999753333345567899999999999999865
No 57
>PRK10867 signal recognition particle protein; Provisional
Probab=86.27 E-value=16 Score=31.49 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=54.5
Q ss_pred EEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHH
Q 046290 35 MVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSA 114 (197)
Q Consensus 35 lv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (197)
++...++--+-.+.+.|..+ ++..+..+.++..-...+
T Consensus 105 ~vG~~GsGKTTtaakLA~~l----------~~~~G~kV~lV~~D~~R~-------------------------------- 142 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYL----------KKKKKKKVLLVAADVYRP-------------------------------- 142 (433)
T ss_pred EECCCCCcHHHHHHHHHHHH----------HHhcCCcEEEEEccccch--------------------------------
Confidence 34444555567778888877 555466777775522211
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh---hHHHHHHHHcCCCEEEEccCCCCchhhhhc
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK---DMICQSAEQMHIDLLVVGSRGLGKIKRAFL 171 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~---~~I~~~a~~~~~dllVlG~~~~~~~~~~~~ 171 (197)
...+++..++...|+++.......++. ...++.++..++|+|++-+.|+......++
T Consensus 143 aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm 202 (433)
T PRK10867 143 AAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELM 202 (433)
T ss_pred HHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHH
Confidence 112233344455566654322223443 344456677789999999999876544433
No 58
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=86.08 E-value=7.1 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=27.3
Q ss_pred CccEEEEEeCCCHHHHH-HHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFN-ALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~-al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++++.++..+-+ +.+.+-.+ . +.|.+++++-.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L----------~-k~G~~V~vv~T 41 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKL----------V-DEGAEVTPIVS 41 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHH----------H-hCcCEEEEEEC
Confidence 35789999999999888 57777666 2 22677777653
No 59
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=85.90 E-value=13 Score=31.48 Aligned_cols=35 Identities=6% Similarity=0.283 Sum_probs=27.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEE
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVH 76 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~ 76 (197)
.++|++++.++..+..++++.-.+ -+ .+.+++++.
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L----------~~-~g~~V~vv~ 37 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVREL----------VR-QGAEVKVIM 37 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHH----------Hh-CCCEEEEEE
Confidence 568999999999998888888777 22 367777664
No 60
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=85.63 E-value=17 Score=29.03 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=60.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
..+++|++.+...|...+..|...+ |.++..+.+..+...
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~l-------------G~~v~AvTv~sP~~p--------------------------- 56 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEAL-------------GDNVVAVTVDSPYIP--------------------------- 56 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHh-------------ccceEEEEEecCCCC---------------------------
Confidence 5599999999999988888886662 577888887665321
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEe------------------cCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVL------------------EGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~------------------~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...++.+...++..|++.+..-. ...+.+.|.+.+.+.++|+|+=|+..
T Consensus 57 ---~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 57 ---RREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred ---hhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 12333344445555554332211 12356899999999999999999853
No 61
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=85.04 E-value=13 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.0
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+|+|++.+.-.|..++.++.+. +.+++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~--------------g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK--------------GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc--------------CCEEEEEEEecC
Confidence 4899999999999988877665 778999999544
No 62
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=84.51 E-value=15 Score=27.75 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=25.3
Q ss_pred cEEEEEeCCCHHHHHHH-HHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAESFNAL-KWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al-~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
++|++++.++..+..+. +..-.+ . ..+.+++++..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L----------~-~~g~~V~vI~S 36 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL----------V-DEGAEVTPIVS 36 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH----------H-hCcCEEEEEEc
Confidence 47999999999998886 655555 2 22677776643
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=84.23 E-value=7 Score=31.96 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=30.9
Q ss_pred ecC-ChhhHHHHHHHHc-------CCCEEEEccCCCCchhhhh-cc-chhHHHhhcCCCcEEEE
Q 046290 136 LEG-DPKDMICQSAEQM-------HIDLLVVGSRGLGKIKRAF-LG-SVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 136 ~~g-~~~~~I~~~a~~~-------~~dllVlG~~~~~~~~~~~-~g-s~~~~ll~~~~~pVliv 189 (197)
..| +....|++..+.. .+|+||+++.|. ...+++ |. -..-+-+..+++||+.-
T Consensus 51 vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-s~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 51 VQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-SIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred ccccchHHHHHHHHHHHHhccccccccEEEEecCCC-ChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 346 5566666654433 489999996654 444432 22 22233466788998754
No 64
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=84.08 E-value=10 Score=25.27 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=27.1
Q ss_pred EEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 34 VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 34 Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
|+|++.+...|...+..+.+. +.++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~--------------~~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL--------------GYQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh--------------CCCEEEEEEcCCC
Confidence 589999999999888888777 3478888885553
No 65
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=83.67 E-value=27 Score=30.48 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=67.5
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
..+++.++.+.--...+.+|-++ +..+.++-|...+..
T Consensus 360 gdviltyg~s~vV~~ill~A~~~--------------~k~frVvVVDSRP~~---------------------------- 397 (556)
T KOG1467|consen 360 GDVLLTYGSSSVVNMILLEAKEL--------------GKKFRVVVVDSRPNL---------------------------- 397 (556)
T ss_pred CCEEEEecchHHHHHHHHHHHHh--------------CcceEEEEEeCCCCc----------------------------
Confidence 46888999988877777778877 778888866444421
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC--chhhhhcc-chhHHHhhcCCCcEEE
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG--KIKRAFLG-SVSDYCAHHAVCPIII 188 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~--~~~~~~~g-s~~~~ll~~~~~pVli 188 (197)
+.+ ++.+.+...|+++.+....+ ..-|. ..++.|++|++.-- +.--...| +...-+.+..++|||+
T Consensus 398 EG~----~~lr~Lv~~GinctYv~I~a--~syim-----~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlV 466 (556)
T KOG1467|consen 398 EGR----KLLRRLVDRGINCTYVLINA--ASYIM-----LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLV 466 (556)
T ss_pred chH----HHHHHHHHcCCCeEEEEehh--HHHHH-----HhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEE
Confidence 111 23344567799998877765 22222 36789999997521 11111112 2333456666899999
Q ss_pred ECCC
Q 046290 189 VKPP 192 (197)
Q Consensus 189 v~~~ 192 (197)
|=..
T Consensus 467 CCE~ 470 (556)
T KOG1467|consen 467 CCEA 470 (556)
T ss_pred Eech
Confidence 9553
No 66
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=83.63 E-value=22 Score=29.64 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=26.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
++|+|++.+...|..++..+.+. +.++..+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~--------------G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ--------------GYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc--------------CCcEEEEEEeC
Confidence 37999999999988877655444 56788888864
No 67
>PLN00200 argininosuccinate synthase; Provisional
Probab=83.54 E-value=27 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+++|+|++.+.-.|..++.++.+. .+.+++.+|+...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e~-------------~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLREN-------------YGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHh-------------hCCeEEEEEEECC
Confidence 579999999999999888877553 2668999988544
No 68
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.17 E-value=29 Score=29.90 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=66.4
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
=.+|.+-++--.-.+-+.|.++ .+ .+-.+-++..--..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~l----------kk-~~~kvllVaaD~~Rp------------------------------ 141 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYL----------KK-KGKKVLLVAADTYRP------------------------------ 141 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHH----------HH-cCCceEEEecccCCh------------------------------
Confidence 3456667776667777788888 44 577777776532221
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC-Ch---hhHHHHHHHHcCCCEEEEccCCCCchhhhhccch
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG-DP---KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSV 174 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~ 174 (197)
...++++..+...++++-.. ..+ ++ ++.=++.+++..+|+||+-+.||..+..-++...
T Consensus 142 --AA~eQL~~La~q~~v~~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El 204 (451)
T COG0541 142 --AAIEQLKQLAEQVGVPFFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL 204 (451)
T ss_pred --HHHHHHHHHHHHcCCceecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHH
Confidence 34556666677767776444 323 44 4666778899999999999999998887666544
No 69
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=83.07 E-value=18 Score=27.52 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred EEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHH
Q 046290 36 VAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAA 115 (197)
Q Consensus 36 v~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (197)
++.-.++.+..++..+..+ |+..+..+.++.+-+.. .+.
T Consensus 29 ~~~vi~e~~~~~l~ea~~l----------a~~~g~~v~av~~G~~~-------------------------------~~~ 67 (202)
T cd01714 29 VPLIINPYDEYAVEEALRL----------KEKYGGEVTVVSMGPPQ-------------------------------AEE 67 (202)
T ss_pred CCccCChHhHHHHHHHHHh----------hhhcCCEEEEEEECCHH-------------------------------HHH
Confidence 4444567788888899998 77777787777652210 111
Q ss_pred HHHHHHHHhHhcCCceEEEEecC--------ChhhHHHHHHHHcCCCEEEEccCCCCc
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG--------DPKDMICQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g--------~~~~~I~~~a~~~~~dllVlG~~~~~~ 165 (197)
.. +.+..+|.+--+.+... ...+.|.+.+++.++|+|++|+...+.
T Consensus 68 ~~----~~l~~~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t~~~~ 121 (202)
T cd01714 68 AL----REALAMGADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDG 121 (202)
T ss_pred HH----HHHHHcCCCEEEEEecccccCCChHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 11 11223455332332221 135678888888889999999876533
No 70
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=82.50 E-value=28 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=29.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
..++||.+.++..|..++-++... |.+++.+|+...
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr--------------G~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR--------------GCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc--------------CCeEEEEEEeCC
Confidence 579999999999998888776665 789999999643
No 71
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=81.94 E-value=13 Score=31.60 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=29.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
.++|+|+|.++..+-++++.+..+ .+.|+++.++..
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L-----------~~~ga~v~vvmt 39 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLL-----------RRSGAEVRVVMT 39 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHH-----------hhCCCeeEEEcc
Confidence 459999999999999988888777 344888888865
No 72
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=81.91 E-value=5.3 Score=28.59 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC----CCchhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG----LGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~----~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
..+.|.+++++++++.||+|-.- ..+.........+++|-...++||..+....+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 47889999999999999999542 11222233445667776667899998876543
No 73
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=81.75 E-value=4.5 Score=27.25 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=42.1
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
-..++.++.+++.|++++..-. ....+....+ ++|++++|.+-+..+ .-.++.......||.++++
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~---~~~e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAG---AYGSHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEe---eHHHHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcCCCEEEeCH
Confidence 3455566777888887764322 2233445555 789999997654333 2335566677899998875
No 74
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=81.41 E-value=17 Score=27.16 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=24.1
Q ss_pred EEEEEeCCC-HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 33 KVMVAIDES-AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 33 ~Ilv~vd~s-~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
||++++.+| ......++....+ +++.|.+++++-.
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L----------~~~~g~eV~vv~S 36 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDV----------KNRYGDEIDVFLS 36 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHH----------HHhcCCEEEEEEC
Confidence 588999998 3334466777777 6556778777644
No 75
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=81.02 E-value=24 Score=27.47 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+.++++++...+.+.++.. ...|.+...-+..+.+.++|.+|+|+.
T Consensus 156 ~KI~~l~~~~~~~~~~~~I-eVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 156 DKLRAIRKKIDALGKPIRL-EIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHHHhcCCCeeE-EEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 3444455555555555544 346666555555556669999999964
No 76
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=80.77 E-value=5.5 Score=26.51 Aligned_cols=66 Identities=6% Similarity=0.034 Sum_probs=40.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
...++.+.+++.|++++..-. +.. .+.+... ++|+|+++.+-+..+ ...++.....++||.++++.
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~--~~~-~~~~~~~--~~Dvill~pqi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAG--SYG-AAGEKLD--DADVVLLAPQVAYML------PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEe--cHH-HHHhhcC--CCCEEEECchHHHHH------HHHHHHhhhcCCCEEEeChh
Confidence 345566667778887654332 222 2333344 789999986543322 23355667778999999864
No 77
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=80.23 E-value=25 Score=28.44 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=27.2
Q ss_pred hHhcCCceEEEEec----CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 124 CKDKMVKAESLVLE----GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 124 ~~~~~v~~~~~~~~----g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+++.|+++...-.. .+....+.+..++.++|++|+....
T Consensus 133 A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 133 VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 66778877542211 2345678888999999999998754
No 78
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=79.72 E-value=10 Score=32.38 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=46.7
Q ss_pred CCceEEEEecCC---------hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 128 MVKAESLVLEGD---------PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 128 ~v~~~~~~~~g~---------~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+.++...+.+|| +.+.|+.++++.++|++|.|-.=..+--+...|.++..+-.+..+|++.-
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 345555566664 24789999999999999999753333344567899999999999999865
No 79
>PRK00919 GMP synthase subunit B; Validated
Probab=79.70 E-value=33 Score=28.17 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=30.1
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
++++|++.++..|..++.++.+. .+.+++.+|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~-------------lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA-------------IGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH-------------hCCeEEEEEEECCC
Confidence 68999999999999888877663 26789999996553
No 80
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=79.70 E-value=16 Score=24.48 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEec-----------C-ChhhHHHHHHHHcCCCEEEEcc
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLE-----------G-DPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~-----------g-~~~~~I~~~a~~~~~dllVlG~ 160 (197)
..++.++++...+...|+.+...+.. | ...++|.+.++..++|+||...
T Consensus 5 ~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 5 DFEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 34567777888888777655422221 3 4679999999999999999974
No 81
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=79.26 E-value=28 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+.+.++++..++++.++.. ...|.....-...+.+.++|.+|+|+.
T Consensus 164 ~KI~~lr~~~~~~~~~~~I-eVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 164 DRVIQVENRLGNRRVEKLI-SIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHHhcCCCceE-EEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 3444555555566666544 446666555555556669999999964
No 82
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=79.20 E-value=28 Score=27.30 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=28.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
++++|.+.+.-.|..++.+|.+. +.+++.+++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~--------------~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ--------------YDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc--------------CCeEEEEEEEeCC
Confidence 47999999999999888888554 4578888886553
No 83
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=78.98 E-value=23 Score=26.05 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=29.3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
+++|++.++..|..++.++.+. |.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~--------------g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR--------------GIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc--------------CCeEEEEEEeCCC
Confidence 4899999999999888887776 7889999996553
No 84
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=78.92 E-value=27 Score=26.71 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=52.9
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
+|.|-+.++-.+..|+--|+.- .. .++++.+|-...+..
T Consensus 2 ki~VlaSG~GSNlqaiida~~~----------~~-~~a~i~~Visd~~~A------------------------------ 40 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIKG----------GK-LDAEIVAVISDKADA------------------------------ 40 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHhc----------CC-CCcEEEEEEeCCCCC------------------------------
Confidence 6888888887777777777764 22 256666554422221
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC-----ChhhHHHHHHHHcCCCEEEEcc
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG-----DPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g-----~~~~~I~~~a~~~~~dllVlG~ 160 (197)
...+.+++.|+.....-... .....|.+..++.++|+||+..
T Consensus 41 ------~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 41 ------YALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred ------HHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 14455667787664433322 2678999999999999999964
No 85
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=78.27 E-value=39 Score=28.25 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=26.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
++|+|++.+...|..++..+.+. +-++..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~--------------G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ--------------GYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc--------------CCeEEEEEEE
Confidence 37999999999998877766665 6688999884
No 86
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=78.12 E-value=16 Score=33.92 Aligned_cols=43 Identities=21% Similarity=0.095 Sum_probs=37.3
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCc
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQ 82 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~ 82 (197)
...+|.+..=+.+....|+.++.++ |.+....+++++.++...
T Consensus 613 ~~~~v~~lF~GG~DDrEALa~~~rm----------~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 613 SSYKVVVLFLGGKDDREALALAKRM----------AENPRVTLTVIRFFPDES 655 (769)
T ss_pred ceeEEEEEecCChhhHHHHHHHHHH----------hhCCceEEEEEEeeccch
Confidence 3567778888889999999999999 899999999999988764
No 87
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=77.87 E-value=6.5 Score=26.75 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
-...+..+.+++.|++++.. ..+.. .+.+.....++|+|++|.+-+.. -.-.+++....++||.++++
T Consensus 16 lla~k~k~~~~e~gi~~~i~--a~~~~-e~~~~~~~~~~DvIll~PQi~~~------~~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVD--AITAT-EGEKAIAAAEYDLYLVSPQTKMY------FKQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHHHHHHHHCCCceEEE--EecHH-HHHHhhccCCCCEEEEChHHHHH------HHHHHHHhhhcCCCEEEeCH
Confidence 34455566677788876543 23222 34445444579999998653222 23335566677899999976
No 88
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=77.64 E-value=38 Score=27.80 Aligned_cols=36 Identities=31% Similarity=0.253 Sum_probs=28.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.++..|..++..+... .+.+++.+|+...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~-------------~G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA-------------IGDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH-------------hCCCEEEEEEeCC
Confidence 68999999999998877766554 2568999999655
No 89
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=77.40 E-value=36 Score=27.72 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=27.5
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+++|++.++..|..++..+... .+.++..+|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-------------lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-------------IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-------------hCCcEEEEEecCC
Confidence 4899999999998888877664 1567999999544
No 90
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=77.30 E-value=13 Score=31.80 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=46.2
Q ss_pred CceEEEEecCC---------hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 129 VKAESLVLEGD---------PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 129 v~~~~~~~~g~---------~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.++...+.+|| +.+.|+.++++.++|++|.|-.=..+--+...|.++..+-.+..+|++.-
T Consensus 44 ~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 44 AEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred CEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 45555566664 24789999999999999999753333344567899999999999999865
No 91
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=77.15 E-value=38 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=30.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+.++++++.++..|..+|..+...+.. .+.++.++|+-..
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~----------~~~p~~vl~IDTG 58 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYP----------GPLPFPLLHVDTG 58 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcc----------cCCCeEEEEEecC
Confidence 445688899999999999988887432 2467899999554
No 92
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=76.60 E-value=25 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=18.5
Q ss_pred EEEEEeCCCHHHHHHHHHHHHh
Q 046290 33 KVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l 54 (197)
.++|++.+...|..++..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~ 24 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK 24 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH
Confidence 5899999999998888877665
No 93
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=76.28 E-value=25 Score=27.45 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEec-----CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLE-----GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV 183 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-----g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~ 183 (197)
-.-..-..+..+.+.+++.|.++.+.... ++..+.|.++.++++++-|++-..+.-.+. ...+.+.....
T Consensus 43 Kl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~-----~~l~~~~~~~~ 117 (224)
T PF04244_consen 43 KLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLE-----QRLESLAQQLG 117 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHH-----HHHHH----SS
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHH-----HHHHhhhcccC
Confidence 33444556666777788889999887766 367899999999999999999766543333 33455777888
Q ss_pred CcEEEECCC
Q 046290 184 CPIIIVKPP 192 (197)
Q Consensus 184 ~pVliv~~~ 192 (197)
||+-+++.+
T Consensus 118 i~~~~~~~~ 126 (224)
T PF04244_consen 118 IPLEVLEDP 126 (224)
T ss_dssp S-EEEE--T
T ss_pred CceEEeCCC
Confidence 999998764
No 94
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=76.25 E-value=52 Score=28.64 Aligned_cols=93 Identities=14% Similarity=0.011 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHH
Q 046290 39 DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLS 118 (197)
Q Consensus 39 d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (197)
|.--....||..|+.. +. ..|..|+|.++....... .......-..+.+.
T Consensus 11 DLRl~DN~aL~~A~~~----------~~---~~vlpvyv~dp~~~~~~~-----------------~~~~r~~Fl~esL~ 60 (472)
T PRK10674 11 DLRLHDNLALAAACRD----------PS---ARVLALFIATPAQWAAHD-----------------MAPRQAAFINAQLN 60 (472)
T ss_pred CCCcchHHHHHHHHhC----------CC---CCEEEEEEECchhhccCC-----------------CCHHHHHHHHHHHH
Confidence 4445566778777766 21 369999998874211100 01223344556666
Q ss_pred HHHHHhHhcCCceEEEEe--cCChhhHHHHHHHHcCCCEEEEccC
Q 046290 119 RALQMCKDKMVKAESLVL--EGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~--~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
.+.+.+++.|+....... .|++.+.|.+++++.+++-|+.-..
T Consensus 61 ~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 61 ALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 677777777776643332 3689999999999999999998653
No 95
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=76.25 E-value=58 Score=29.22 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-Ch---hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DP---KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
...+++...++..|++++..+..- .. ...+.+.++..+++++|.++.....+.+ -+...+.+||+-||
T Consensus 424 ~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~--------~~a~~t~~pvi~vp 495 (577)
T PLN02948 424 PTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPG--------MVASMTPLPVIGVP 495 (577)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchH--------HHhhccCCCEEEcC
Confidence 345556677788899888877764 23 3444555666789988888765544443 25557899999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
.+.
T Consensus 496 ~~~ 498 (577)
T PLN02948 496 VKT 498 (577)
T ss_pred CCC
Confidence 854
No 96
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=76.24 E-value=35 Score=26.61 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=58.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEE-eecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVH-VQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
++++-+.+...|..|+-+|.+. |-+|..+- +.+.....++++.+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~--------------G~eV~~Ll~~~p~~~dS~m~H~~n-------------------- 47 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE--------------GHEVVYLLTVKPENGDSYMFHTPN-------------------- 47 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc--------------CCeeEEEEEEecCCCCeeeeeccc--------------------
Confidence 5788889999999888888888 65655444 444443233333222
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
++-+...+...|+.+.+....| .-.+.+....+..++|.||.|.--
T Consensus 48 -----~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~ 96 (223)
T COG2102 48 -----LELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIA 96 (223)
T ss_pred -----hHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhh
Confidence 1112223344567766555555 356778888888889999999753
No 97
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=75.55 E-value=36 Score=26.50 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=53.6
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
++++...+...|.-|+-++.+. ...+.++.+.+.....+..+...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~--------------~~V~~L~~~~~~~~~s~~~h~~~--------------------- 46 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE--------------HEVISLVGVFSENEESYMFHSPN--------------------- 46 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc--------------CeeEEEEEEcCCCCCccccccCC---------------------
Confidence 5888999999988887777654 23455555555432222222211
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
++.+...++..|++.......| +..+.+.+..++.+++.||-|.-.
T Consensus 47 ----~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 47 ----LHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred ----HHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 1223344455577665444444 345666666677788899988754
No 98
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=37 Score=29.20 Aligned_cols=111 Identities=22% Similarity=0.125 Sum_probs=64.2
Q ss_pred EEEEEeCCCH-HHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 33 KVMVAIDESA-ESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 33 ~Ilv~vd~s~-~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
-||+.=|+.. .|.-+|+.+.++ |++. .++||--.
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~l----------A~~~----~vLYVsGE------------------------------- 129 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARL----------AKRG----KVLYVSGE------------------------------- 129 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHH----------HhcC----cEEEEeCC-------------------------------
Confidence 3555555553 366778888888 6544 67777333
Q ss_pred HHHHHHHHHHHHhHhcCCceE-EEEecCChhhHHHHHHHHcCCCEEEEccCCCCchh--hhhccchhH---------HHh
Q 046290 112 NSAALLSRALQMCKDKMVKAE-SLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIK--RAFLGSVSD---------YCA 179 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~-~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~--~~~~gs~~~---------~ll 179 (197)
+..++.+-.+++.|+... ..+..-.-.+.|.+.+++.+.|++|+.+-.--... .-.-||+++ ++.
T Consensus 130 ---ES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 130 ---ESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred ---cCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 222333444444454333 33333345688889999999999999985411111 112344443 345
Q ss_pred hcCCCcEEEECC
Q 046290 180 HHAVCPIIIVKP 191 (197)
Q Consensus 180 ~~~~~pVliv~~ 191 (197)
.+.++++++|-+
T Consensus 207 K~~~i~~fiVGH 218 (456)
T COG1066 207 KTKNIAIFIVGH 218 (456)
T ss_pred HHcCCeEEEEEE
Confidence 555689888843
No 99
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.54 E-value=56 Score=28.18 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=53.3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
-+++...++--+..+.+.|..+ +...+..+.++..-...+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l----------~~~~g~kV~lV~~D~~R~------------------------------ 141 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYL----------KKKQGKKVLLVACDLYRP------------------------------ 141 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHH----------HHhCCCeEEEEeccccch------------------------------
Confidence 3444445566667777888777 433466777775532211
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChh---hHHHHHHHHcCCCEEEEccCCCCchhhhh
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPK---DMICQSAEQMHIDLLVVGSRGLGKIKRAF 170 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~---~~I~~~a~~~~~dllVlG~~~~~~~~~~~ 170 (197)
...+++...+...++++.......++. ...++.+...++|+|++-+.|+......+
T Consensus 142 --~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l 200 (428)
T TIGR00959 142 --AAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEEL 200 (428)
T ss_pred --HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHH
Confidence 012233344444566554322212443 33455566678999999999987654433
No 100
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=74.37 E-value=12 Score=28.84 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=38.1
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.....+..++.+.|.||+++....... .+-++.++.++..|.+|+.+.
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaaPG----P~kARE~l~~s~~PaiiigDa 96 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAAPG----PKKAREILSDSDVPAIIIGDA 96 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCC----chHHHHHHhhcCCCEEEecCC
Confidence 456677899999999999987654322 467889999999999999654
No 101
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=74.36 E-value=43 Score=27.05 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=53.2
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
.++||.|-+.++-.+..++-.+..- ...++++.+ |+....
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-----------g~l~~~i~~--visn~~--------------------------- 122 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-----------GELDAEIAL--VISNHE--------------------------- 122 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-----------CCCCcEEEE--EEEcCh---------------------------
Confidence 3578999999998888888877655 223445444 444431
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEec----CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLE----GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~----g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
. +...+++.|+++...-.. .+....+.+..++.++|++|+....
T Consensus 123 --~-------~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 123 --D-------LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred --h-------HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 0 111256677876443221 1245678888899999999998543
No 102
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.23 E-value=8.8 Score=27.36 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCC----CchhhhhccchhHHHhhcC-CCcEEEECCCCC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGL----GKIKRAFLGSVSDYCAHHA-VCPIIIVKPPKE 194 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~----~~~~~~~~gs~~~~ll~~~-~~pVliv~~~~~ 194 (197)
+...+.|.+.+++++++.+|+|-.-. .+-.....-..++.+-... ++||..+....+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 36899999999999999999998521 1222223355667777777 899999876543
No 103
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=73.74 E-value=41 Score=26.32 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
..-+.+.++++...+.+.++... ..|.+...-+..+.+-++|.+|+|+.
T Consensus 151 ~~l~KI~~lr~~~~~~~~~~~Ie-VDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 151 EMLDKIAELKALRERNGLEYLIE-VDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEE-EECCCCHHHHHHHHHcCCCEEEEChH
Confidence 33344455556666666665443 36655444444555569999999964
No 104
>PRK14057 epimerase; Provisional
Probab=73.60 E-value=44 Score=26.62 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
.-+.+.++++...+.+.++.. ...|.+...-...+.+.++|.+|+|+.
T Consensus 176 ~l~KI~~lr~~~~~~~~~~~I-eVDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 176 LHERVAQLLCLLGDKREGKII-VIDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHHHHhcCCCceE-EEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 333444555555666665544 346766555555555569999999964
No 105
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=73.22 E-value=40 Score=27.92 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=41.7
Q ss_pred HHHHHHHhHhcCCceEEEEecCC----hhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGD----PKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+++.+.++..++.+...+..|+ ..+.+.+.+++.++|.|| +|... - -.++..+......|++.||.
T Consensus 38 ~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs--~------~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 38 RPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGK--T------LDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred HHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcH--H------HHHHHHHHHHcCCCEEEeCC
Confidence 45566666666776555555554 356677788888999877 55321 1 12222233334689999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 110 ta 111 (349)
T cd08550 110 IA 111 (349)
T ss_pred cc
Confidence 53
No 106
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=73.18 E-value=11 Score=29.59 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.7
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCCCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQ 195 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~~ 195 (197)
.+......++++.|++|+.+....... ..-+++++.....|.+|+.+....
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p~~ 99 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAGIPCIVIGDAPGK 99 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcCCCEEEEcCCCcc
Confidence 445666778899999999887644221 356789999999999999765443
No 107
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=73.10 E-value=29 Score=29.82 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred cC-ChhhHHHHHHHHcC---CCEEEEccCCCCchhhhh-cc-chhHHHhhcCCCcEEEE
Q 046290 137 EG-DPKDMICQSAEQMH---IDLLVVGSRGLGKIKRAF-LG-SVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g-~~~~~I~~~a~~~~---~dllVlG~~~~~~~~~~~-~g-s~~~~ll~~~~~pVliv 189 (197)
.| +....|++..+..+ +|+||+++.|. ...+++ |. -..-+.+..+++||+.-
T Consensus 173 QG~~A~~~i~~al~~~~~~~~Dviii~RGGG-S~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 173 QGEGAAASIVAAIERANARGEDVLIVARGGG-SLEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred cCccHHHHHHHHHHHhcCCCCCEEEEecCCC-CHHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 36 46677776654444 59999996654 444432 22 22233466789998864
No 108
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=72.62 E-value=44 Score=27.50 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=31.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+.++++++.+...|...+..+...+.. .+.++.+|||-..
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~----------~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRP----------TRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcc----------cCCCeeEEEeCCC
Confidence 567899999999999999999888432 2567889998443
No 109
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=72.14 E-value=48 Score=26.91 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=53.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|-+.++-.+..++-.+... ...++++ +-|+...+
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~-----------~~l~~~i--~~visn~~---------------------------- 131 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRM-----------GELDMDI--VGIISNHP---------------------------- 131 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHC-----------CCCCcEE--EEEEECCh----------------------------
Confidence 568999999988888888877665 2234444 44444431
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec----CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE----GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~----g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+++.|+.+...-.. .+....+.+..++.++|++|+....
T Consensus 132 --------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 132 --------DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred --------hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 0124566778876542111 1345678899999999999998653
No 110
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=71.85 E-value=54 Score=26.86 Aligned_cols=61 Identities=16% Similarity=0.353 Sum_probs=35.5
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccc-hhHHHhhcCCCcEEEECC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGS-VSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs-~~~~ll~~~~~pVliv~~ 191 (197)
.+.+.|+++.. +..+...-. .. ++|.+++|+..- ++.-+. .|+ ...-+.++.++||+++-+
T Consensus 166 ~L~~~GI~vtl-I~Dsav~~~----m~--~vd~VivGAd~v~~nG~v~nk-iGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 166 ELAEYGIPVTL-IVDSAVRYF----MK--DVDKVVVGADAITANGAVINK-IGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred HHHHCCCCEEE-EehhHHHHH----HH--hCCEEEECccEEecCCCEEeH-HhHHHHHHHHHHhCCCEEEecc
Confidence 34556887754 333333322 23 599999999752 223222 343 333456777899999854
No 111
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=71.53 E-value=54 Score=26.74 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=35.6
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccc-hhHHHhhcCCCcEEEECC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGS-VSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs-~~~~ll~~~~~pVliv~~ 191 (197)
.+.+.|+++.. +..+.+.- + .. ++|.+++|+.+- ++.-+. .|+ ..--+.++.++||+++-+
T Consensus 161 ~L~~~gI~vtl-I~Dsa~~~-~---m~--~vd~VivGad~v~~nG~v~nk-iGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 161 ELRDYGIPVTL-IVDSAVRY-F---MK--EVDHVVVGADAITANGALINK-IGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHCCCCEEE-EehhHHHH-H---HH--hCCEEEECccEEecCCCEEEH-HhHHHHHHHHHHhCCCEEEEcc
Confidence 44566887754 33332222 2 23 599999999752 223222 343 333456777899999854
No 112
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=71.11 E-value=25 Score=31.20 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHH---HHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQS---AEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~---a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.+.+.+.+.+++..++..++.+...+++... ....++|+||-. |++++.|-.+.++||+-++.
T Consensus 24 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~ 91 (538)
T PRK15424 24 RLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILIKP 91 (538)
T ss_pred HHHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEecC
Confidence 355556666777766677666676655555444 445578888753 67778788888999999976
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 92 s 92 (538)
T PRK15424 92 S 92 (538)
T ss_pred C
Confidence 4
No 113
>PRK08185 hypothetical protein; Provisional
Probab=70.99 E-value=18 Score=29.24 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=41.6
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.-...+++++.|++.+.-+|+..+.+.......-+......+..++++||.+-
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lH 74 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIH 74 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 34789999999999999999998876543223336777888899999998764
No 114
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=70.57 E-value=16 Score=24.25 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+++.+.+++.|++++.... +..+ +..... ++|+|+++.+-+..+. ..++......+||.++++.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~--~~~~-~~~~~~--~~Diil~~Pqv~~~~~------~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAV--PESE-LEEYID--DADVVLLGPQVRYMLD------EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEe--cHHH-HHHhcC--CCCEEEEChhHHHHHH------HHHHHhccCCCcEEEcChH
Confidence 344567777888887654333 2222 223333 7899999865433222 2233445668999999874
No 115
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=70.33 E-value=24 Score=30.20 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHcCCCEEEEccC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~ 161 (197)
-.+.|+++|++.++||+|+|.-
T Consensus 51 ~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 51 DHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred CHHHHHHHHHHcCCCEEEECCc
Confidence 3467777777777777777753
No 116
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=70.25 E-value=18 Score=25.61 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=38.0
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCC----CCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRG----LGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~----~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
...+.|.+++++++++.||+|-.- ..+-........++++-...++||..+....
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 457889999999999999999432 1112222334566667667789999887654
No 117
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=69.07 E-value=56 Score=25.87 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=66.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
...=+++.+-......++.++.+ |+..+..+-.-=-+++...+ .+ -..+...+++..
T Consensus 28 ~saNIACG~HAGDp~~M~~tv~l----------A~~~gV~iGAHPsyPD~~gF------------GR-r~m~~s~~el~~ 84 (242)
T PF03746_consen 28 SSANIACGFHAGDPETMRRTVRL----------AKEHGVAIGAHPSYPDREGF------------GR-RSMDISPEELRD 84 (242)
T ss_dssp SEEEEE-SSSS--HHHHHHHHHH----------HHHTT-EEEEE---S-TTTT------------T--S-----HHHHHH
T ss_pred hhHHHhhcccccCHHHHHHHHHH----------HHHcCCEeccCCCCCCCCCC------------CC-CCCCCCHHHHHH
Confidence 34556666666666777777777 66667655432223332211 11 112334466777
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
.....+..+...++..|.++...--+| ..++.|++.+...+.++.++|.. ||...+..+.
T Consensus 85 ~v~yQigaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a----------gs~~~~~A~~ 154 (242)
T PF03746_consen 85 SVLYQIGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA----------GSELEKAAKE 154 (242)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET----------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC----------CcHHHHHHHH
Confidence 777778888889999998886655554 35789999999999999999865 3334445555
Q ss_pred CCCcEE
Q 046290 182 AVCPII 187 (197)
Q Consensus 182 ~~~pVl 187 (197)
...+++
T Consensus 155 ~Gl~~~ 160 (242)
T PF03746_consen 155 LGLPVV 160 (242)
T ss_dssp CT--EE
T ss_pred CCCcEE
Confidence 555543
No 118
>PRK06850 hypothetical protein; Provisional
Probab=69.01 E-value=57 Score=28.79 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=46.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
..++|++.++..|..++..+...+...+ .......+++++.-..-.. .....
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al~~lp-----~e~r~k~v~Vi~~DTgvE~-----------------------Pe~~~ 86 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNALAGLP-----PEKRTKPVYVISSDTLVEN-----------------------PVVVD 86 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHHHhcc-----hhccCCcEEEEECCCCCcc-----------------------HHHHH
Confidence 3478999999999999988877643332 2233446666665222110 22334
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEe
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVL 136 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~ 136 (197)
...+.++.+...++..|+++.++++
T Consensus 87 ~v~~~l~~i~~~a~~~glpi~~~~v 111 (507)
T PRK06850 87 WVNKSLERINEAAKKQGLPITPHKL 111 (507)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEee
Confidence 4555556666666666777766554
No 119
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.02 E-value=80 Score=27.28 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHhHhcCCceEEEEecCChhh---HHHHHHHHcCCCEEEEccCCCCchhhhhccch
Q 046290 119 RALQMCKDKMVKAESLVLEGDPKD---MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSV 174 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~~~---~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~ 174 (197)
+++..+...++.+.......++.. .-++.++..++|+|++-+.|+......++...
T Consensus 146 QLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El 204 (429)
T TIGR01425 146 QLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEM 204 (429)
T ss_pred HHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHH
Confidence 334444445566543222335433 33445555689999999999887665554443
No 120
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=68.00 E-value=66 Score=26.33 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
..+++-..+|..-...+..|... +.++.++-+-..+.
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~~--------------~k~~~V~VtESRP~----------------------------- 156 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAADR--------------GKRFKVIVTESRPR----------------------------- 156 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhhc--------------CCceEEEEEcCCCc-----------------------------
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC---CCchhhhhccchhHHHhhcCCCcEEE
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG---LGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~---~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
..-..+.+.+.+.|+++ +.+ +..++..+.+ ++|.+++|+.. .+.+-+..-.+..--+.++...|+++
T Consensus 157 ---~eG~~~ak~L~~~gI~~-~~I----~Dsa~~~~~~--~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v 226 (301)
T COG1184 157 ---GEGRIMAKELRQSGIPV-TVI----VDSAVGAFMS--RVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYV 226 (301)
T ss_pred ---chHHHHHHHHHHcCCce-EEE----echHHHHHHH--hCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEE
Q ss_pred E
Q 046290 189 V 189 (197)
Q Consensus 189 v 189 (197)
+
T Consensus 227 ~ 227 (301)
T COG1184 227 V 227 (301)
T ss_pred E
No 121
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=67.55 E-value=64 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.0
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
+|+|++.+...|..++..+.+. +.+++.+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~~--------------g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ--------------GYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc--------------CCcEEEEEEec
Confidence 4899999999988876655554 66788888743
No 122
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=67.33 E-value=26 Score=30.12 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=30.0
Q ss_pred cC-ChhhHHHHHHH----HcCCCEEEEccCCCCchhhh-hcc-chhHHHhhcCCCcEEEE
Q 046290 137 EG-DPKDMICQSAE----QMHIDLLVVGSRGLGKIKRA-FLG-SVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g-~~~~~I~~~a~----~~~~dllVlG~~~~~~~~~~-~~g-s~~~~ll~~~~~pVliv 189 (197)
.| +....|+...+ ...+|+||++..|.+ ..++ .|. ...-+-+..+++||+.-
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGGs-~eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGGS-LEDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC-HHHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 46 45566655443 334799999966544 4442 222 22233456788998864
No 123
>PRK08576 hypothetical protein; Provisional
Probab=67.19 E-value=54 Score=28.39 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHh
Q 046290 33 KVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l 54 (197)
+++|++.+...|..++..+.+.
T Consensus 236 rVvVafSGGKDStvLL~La~k~ 257 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKA 257 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHh
Confidence 8999999999999998877776
No 124
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=67.12 E-value=67 Score=26.04 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=51.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|.+.++-.+..++-.+..- ...++++.+| +....
T Consensus 89 ~~ri~vl~Sg~g~nl~al~~~~~~-----------~~~~~~i~~v--isn~~---------------------------- 127 (286)
T PRK13011 89 RPKVLIMVSKFDHCLNDLLYRWRI-----------GELPMDIVGV--VSNHP---------------------------- 127 (286)
T ss_pred CceEEEEEcCCcccHHHHHHHHHc-----------CCCCcEEEEE--EECCc----------------------------
Confidence 558999999887777777777665 2234555554 33321
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-C---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-G---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+...+++.|+.+...... . +....+.+..++.++|++|+....
T Consensus 128 --------~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 128 --------DLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred --------cHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChh
Confidence 0222356678876542111 1 234568888888999999998643
No 125
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=66.95 E-value=18 Score=27.78 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
..+...+.+.+.|.|.+|.+. +...--+..+...+-++.++||++.|...+
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 335556677789999998652 222222344555555557899999987543
No 126
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=66.89 E-value=28 Score=28.21 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh--hhccchhHHHhhcCCCcEEEEC
Q 046290 118 SRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR--AFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~--~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+++.+.+++.+.-+-..-+.+ +...+|++.|++.+..+||=.+.+...... ..+-.....++.+.++||.+--
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHl 82 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHL 82 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEEC
Confidence 344555566555444444444 889999999999999999998876443332 2344667778888899998753
No 127
>PRK00509 argininosuccinate synthase; Provisional
Probab=66.66 E-value=82 Score=26.92 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+++|+|++.+.-.|..++.++.+. .+.+++.+++...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~-------------lG~eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET-------------YGCEVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh-------------hCCeEEEEEEecC
Confidence 568999999999999888887664 1678999998554
No 128
>PRK04527 argininosuccinate synthase; Provisional
Probab=66.65 E-value=82 Score=26.93 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=29.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++|+|++.+.-.|.-++.++... +.+++.+++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~--------------G~~Viavt~d~g 37 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER--------------GYAVHTVFADTG 37 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc--------------CCcEEEEEEEeC
Confidence 468999999999999888887766 678899988554
No 129
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=66.64 E-value=87 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=27.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++.++..|..++..+...+...+ +......+++++.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp-----~e~~~k~v~VI~~ 54 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALP-----AEQRTKKIHVIST 54 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhcc-----ccccCcceEEEEC
Confidence 3478999999999999988877643333 3333445666555
No 130
>PRK06801 hypothetical protein; Provisional
Probab=66.47 E-value=33 Score=27.81 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
...+.+.+.-+-..-.. -.....+++.|++.+.-+|+..+.+.....+ ..+......+..++++||.+-
T Consensus 10 l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 10 LAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 33444444433333333 3789999999999999999998876543322 346778888999999998765
No 131
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.07 E-value=32 Score=27.89 Aligned_cols=70 Identities=9% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
+.+.+.+.+.-+-..-.. -+..+++++.|++.+..+|+.-+.+.....+ -.+......+..++++||.+-
T Consensus 9 ~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValH 80 (284)
T PRK12737 9 MLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALH 80 (284)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 334444444433333333 4789999999999999999987765332111 235677888999999998775
No 132
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=65.36 E-value=68 Score=27.96 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHH
Q 046290 39 DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLS 118 (197)
Q Consensus 39 d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (197)
|..-....||.+|+.. +. ..+.+|++.++.... ........-....|.
T Consensus 11 DLR~~DN~aL~~A~~~----------~~---~~~~~vfi~~~~~~~-------------------~~~~~~~~Fl~~sL~ 58 (461)
T COG0415 11 DLRLTDNAALAAACQS----------GQ---PVIIAVFILDPEQLG-------------------HASPRHAAFLLQSLQ 58 (461)
T ss_pred ccccCChHHHHHHHhc----------CC---CceEEEEEechhhcc-------------------ccCHHHHHHHHHHHH
Confidence 3445567888888888 22 223677777764321 111233344455566
Q ss_pred HHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 119 RALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+...|+ ...+..|++...|.+++++.+++.|+-...-
T Consensus 59 ~L~~~L~~~gi--~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 59 ALQQSLAELGI--PLLVREGDPEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred HHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhCcceEEeeeee
Confidence 66666666665 5567789999999999999998888876554
No 133
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.33 E-value=37 Score=22.39 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=44.8
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-Chhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
....+++.+++.|.+...+-..+ .... .|..... ++|+||+-+.--+.-. -..+.+...+.++|++.++.
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~----~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHNA----MWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChHH----HHHHHHHHHHcCCcEEEECC
Confidence 44556677777888776652223 2222 3666676 8999999876544322 23446677788899999873
No 134
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=65.17 E-value=31 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=41.4
Q ss_pred EecCChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 135 VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 135 ~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
+..-+..+++++.|++.+.-+|+.-+.+.....+ -.+......+..++++||.+-
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lH 80 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALH 80 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3344889999999999999999988765332222 135677888999999998764
No 135
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=64.77 E-value=17 Score=24.90 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~~ 192 (197)
.+....+.|++.++..||+-+.. |.++..+.+.-| ||++++-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCc
Confidence 34567778888888888887653 556666666655 898888553
No 136
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=64.59 E-value=51 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
+++.+|...+...|-..+.||..- +-+++.++....+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~--------------~~ev~alsfdYGQ 38 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE--------------GYEVHALTFDYGQ 38 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhc--------------CCEEEEEEeeCCC
Confidence 568889999999999999998888 6788888875543
No 137
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=64.32 E-value=97 Score=26.92 Aligned_cols=73 Identities=5% Similarity=-0.105 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
-..+.+..+.+.++..|..... +..|++.+.|.+.+++.+++-|..-.. ........ -....+.+....+.+.
T Consensus 48 fl~~sL~~L~~~L~~~G~~L~v-~~~g~~~~~l~~l~~~~~i~~v~~~~~-~~~~~~~r-d~~v~~~l~~~gi~~~ 120 (475)
T TIGR02766 48 WLKQSLAHLDQSLRSLGTCLVT-IRSTDTVAALLDCVRSTGATRLFFNHL-YDPVSLVR-DHRAKEVLTAQGISVQ 120 (475)
T ss_pred HHHHHHHHHHHHHHHcCCceEE-EeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcCCEEE
Confidence 4455666667777777765533 225899999999999999999988765 33332222 2233444444455443
No 138
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.98 E-value=36 Score=27.56 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=46.4
Q ss_pred HHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
+.+.+++.+.-+-..-.. -+..+++++.|++.+..+|+..+.+.....+ -.+......+..++++||.+-
T Consensus 9 iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValH 80 (284)
T PRK12857 9 LLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALH 80 (284)
T ss_pred HHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 333444444333332333 3789999999999999999988765332211 234667788888999999875
No 139
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=63.62 E-value=32 Score=29.67 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 102 VESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
....++...++.+++++++.+.+...|..+...-...+..+.|.+.+++.+...||.|.+
T Consensus 38 ~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 38 VKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 345566667788889999999998888766443322467788999999999999999843
No 140
>PRK11914 diacylglycerol kinase; Reviewed
Probab=63.48 E-value=41 Score=27.22 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.++++.+.+.+.++++....... +-+..+.+.+...++|+||+.. |-+.+. .+++.+. ..+.|+-++|..
T Consensus 27 ~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-GDGTi~-----evv~~l~-~~~~~lgiiP~G 97 (306)
T PRK11914 27 AAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-GDGVIS-----NALQVLA-GTDIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-CchHHH-----HHhHHhc-cCCCcEEEEeCC
Confidence 34445555666677665444332 3456666666566789777653 333333 3334343 457889998853
No 141
>PRK02929 L-arabinose isomerase; Provisional
Probab=63.05 E-value=78 Score=27.93 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhHhcC-CceEEEEecC--ChhhHHHHHHHHcC----CCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 112 NSAALLSRALQMCKDKM-VKAESLVLEG--DPKDMICQSAEQMH----IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~-v~~~~~~~~g--~~~~~I~~~a~~~~----~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
+..+.-+++.+.+...+ +.++.. ..+ ...+.|.+.+++.+ +|.||+-.+..+.-+ ..-.+++..++
T Consensus 26 ~~~~~~~~i~~~l~~~~~~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~------~~i~~~~~l~~ 98 (499)
T PRK02929 26 QVAEHAEEIVDGLNASGKLPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPAK------MWIRGLSALQK 98 (499)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchHH------HHHHHHHHcCC
Confidence 33333444444444322 344443 333 44666667777666 999999877655433 33345788899
Q ss_pred cEEEECC
Q 046290 185 PIIIVKP 191 (197)
Q Consensus 185 pVliv~~ 191 (197)
|||++..
T Consensus 99 PvL~~~~ 105 (499)
T PRK02929 99 PLLHLHT 105 (499)
T ss_pred CEEEEec
Confidence 9999976
No 142
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=62.55 E-value=72 Score=24.86 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=53.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
++++...+...|.-|+-+|... ...+.++++.+.....++.+...
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~--------------~~v~~L~t~~~~~~~s~~~H~~~--------------------- 46 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE--------------HEVISLVNIMPENEESYMFHGVN--------------------- 46 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh--------------CeeEEEEEEecCCCCcccccccC---------------------
Confidence 4778899999999888887765 23566777776653333332221
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEec---CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLE---GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~---g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
++-+...++..|++....... .+..+.+.+..++.+++.||-|.-.
T Consensus 47 ----~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 47 ----AHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred ----HHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 111222333445654322222 2455666666666688888888754
No 143
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.54 E-value=1e+02 Score=26.61 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKP 191 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~ 191 (197)
+...+...|+.+.......+..+.|..+.+..+.|+|++.+.|++......+....+.+-...+ ..+|++..
T Consensus 288 Lk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 288 LQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred HHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 3344445566654322222444555444444478999999998876554444554333322223 23566654
No 144
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=62.46 E-value=93 Score=27.35 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHc----CCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 139 DPKDMICQSAEQM----HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 139 ~~~~~I~~~a~~~----~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
+..+.+.+..++. ++|.||+-.+..+.-+ ..-.+++..++|||++....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~------~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSPAK------MWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCchHH------HHHHHHHHcCCCEEEEccCC
Confidence 4456666666664 4999999877655433 33345788899999997554
No 145
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=62.26 E-value=47 Score=26.83 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
+...+.+.+.-+-..-..+ ...+.+++.|++.+.-+|+..+.+...... -.++.......+++++||.+-
T Consensus 9 ~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lH 80 (281)
T PRK06806 9 LLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVH 80 (281)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEE
Confidence 3344444444333333334 789999999999999999988765432222 245677778899999998764
No 146
>TIGR00930 2a30 K-Cl cotransporter.
Probab=62.25 E-value=1.5e+02 Score=28.47 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
-++||.+.........++++-.+ .+ ..+-..+.||.+.+.. ...+
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l----------~~-~~gl~i~~~v~~~~~~------------------------~~~~ 620 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQF----------TK-GKGLMICGSVIQGPRL------------------------ECVK 620 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHh----------cc-CCcEEEEEEEecCchh------------------------hhHH
Confidence 37999998888888999999999 53 3356667788765321 0111
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHc-----CCCEEEEccCCCCch-----hhhhccchhHHHhh
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQM-----HIDLLVVGSRGLGKI-----KRAFLGSVSDYCAH 180 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~-----~~dllVlG~~~~~~~-----~~~~~gs~~~~ll~ 180 (197)
+.+...++....++..+++.-..+..+ ++.+.+....+.. +...|+||....-.- ..-++ ++.+. ..
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~-~~i~~-a~ 698 (953)
T TIGR00930 621 EAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYI-GIIHD-AF 698 (953)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHH-HHHHH-HH
Confidence 112222333444455566554445544 7878877777654 478899997642110 00111 22222 23
Q ss_pred cCCCcEEEECC
Q 046290 181 HAVCPIIIVKP 191 (197)
Q Consensus 181 ~~~~pVliv~~ 191 (197)
..+.-|+|++.
T Consensus 699 ~~~~~v~i~r~ 709 (953)
T TIGR00930 699 DAHLAVVVVRN 709 (953)
T ss_pred HcCCcEEEEcc
Confidence 55788888875
No 147
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=62.07 E-value=15 Score=26.49 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
++++++.+++.|+++............+.+..+ ++|.|.++--....+.+.+.++-....+++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~--~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIR--EADAIFLGGGDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH--HSSEEEE--S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHhCCHHHHHHH
Confidence 466777888888776554444445557777777 899999986554444444444444444443
No 148
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=61.95 E-value=74 Score=24.78 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
-+.++++++...+.+ ++.. ...|.....-...+..-++|.+|+|+.
T Consensus 154 l~Ki~~lr~~~~~~~-~~~I-eVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 154 LEKIRELRAMIDERL-DILI-EVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHHHHhcccC-CeEE-EEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 334444555555444 4544 346766666666666679999999983
No 149
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=61.84 E-value=36 Score=27.46 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=47.0
Q ss_pred HHHhHhcCCceEEE-EecCChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDKMVKAESL-VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~-~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
...++..+.-+-.. +..-+..+.+++.|++.+..+|+--+.+...... ..+......+..++++||.+-
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lH 75 (276)
T cd00947 5 LKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALH 75 (276)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 33444444433332 3334789999999999999999987765432222 245677888899999999875
No 150
>PLN02858 fructose-bisphosphate aldolase
Probab=61.81 E-value=31 Score=34.38 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=65.4
Q ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccc
Q 046290 95 FYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGS 173 (197)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs 173 (197)
.+..++..-...+.+....+..+.++...+++.+.-+-..-+.+ +..+.+++.|++.+..+|+..+.+.-...+.-+..
T Consensus 1080 ~~G~~~tL~~~~~~l~~~~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~ 1159 (1378)
T PLN02858 1080 NVGDSTALAEVVKSWARPARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVS 1159 (1378)
T ss_pred cCCChHHHHHHHHHhcCcCCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHH
Confidence 44555665566666666666667777777776665444444445 78999999999999999998876532222222455
Q ss_pred hhHHHhhcCCCcEEEE
Q 046290 174 VSDYCAHHAVCPIIIV 189 (197)
Q Consensus 174 ~~~~ll~~~~~pVliv 189 (197)
....+.+++++||.+-
T Consensus 1160 ~~~~~a~~~~vpV~lH 1175 (1378)
T PLN02858 1160 CCIAAAEQASVPITVH 1175 (1378)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 6677888999999875
No 151
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=61.72 E-value=60 Score=26.43 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCC-hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGD-PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
....+.+.++.+.+...|.....+..... -+..+++.+...++|+||.+.-. +. ++.++.-+...-.-|+=++
T Consensus 16 ~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD-GT-----v~evingl~~~~~~~Lgil 89 (301)
T COG1597 16 GKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD-GT-----VNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc-ch-----HHHHHHHHhcCCCCceEEe
Confidence 34566777778888888888777766653 66777777666699999997533 22 3455555554444447777
Q ss_pred CC
Q 046290 190 KP 191 (197)
Q Consensus 190 ~~ 191 (197)
|-
T Consensus 90 P~ 91 (301)
T COG1597 90 PG 91 (301)
T ss_pred cC
Confidence 75
No 152
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=61.71 E-value=43 Score=27.13 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=40.9
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
.-+..+++++.|++.+.-+|+.-+.+.-...+ ..+......+..++++||.+-
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValH 78 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALH 78 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 33789999999999999999988775432212 235678888999999999875
No 153
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=61.64 E-value=65 Score=28.57 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHH---HHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQS---AEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~---a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+.+.+.+++-.++..+..|+..+.+... ....++|+||-. |.+++.|-.+.++||+-++..
T Consensus 19 ~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s 82 (526)
T TIGR02329 19 FRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKPT 82 (526)
T ss_pred HHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecCC
Confidence 3444444433355666778776666544 445678888742 566777777889999998764
No 154
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=61.60 E-value=43 Score=28.00 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=46.9
Q ss_pred HHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCch-hhh---------------hccchhHHHhhcC
Q 046290 120 ALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKI-KRA---------------FLGSVSDYCAHHA 182 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~-~~~---------------~~gs~~~~ll~~~ 182 (197)
+...+++.+.-+-..-. .-...+++++.|++.+..+|+.-+.+.... ... .+......+..++
T Consensus 7 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 86 (345)
T cd00946 7 LFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHY 86 (345)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 33444444443333333 347899999999999999999987763211 111 4567778889999
Q ss_pred CCcEEEE
Q 046290 183 VCPIIIV 189 (197)
Q Consensus 183 ~~pVliv 189 (197)
++||.+-
T Consensus 87 ~VPValH 93 (345)
T cd00946 87 GVPVVLH 93 (345)
T ss_pred CCCEEEE
Confidence 9998765
No 155
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=61.35 E-value=42 Score=27.15 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 114 AALLSRALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.++|+...+..++.|+++.-... +.+-.+.|.++.++.+.|.||+..+.
T Consensus 115 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 115 EEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 35788888888988998875544 45788999999999999999997764
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=61.24 E-value=33 Score=27.61 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHhcCCceEEE-EecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 114 AALLSRALQMCKDKMVKAESL-VLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~-~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.++|+...+..+..++++.-. +-+.+-.+.|.++.++.+.|+||+..+.
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 357888888888888887644 4456888999999999999999997764
No 157
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=60.85 E-value=86 Score=25.18 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~ 191 (197)
+.++.+.+.+.. .+.+-..+-..+.. -.+.+.+++.++|-+++..........--+-..-+.|...+ ++||++...
T Consensus 58 ~~~~~~~~~~~~-~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 58 QIAEIVAEAAKG-KVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHHHHHHHHhCC-CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 344444444432 23333333333444 44556789999999998766443322211223345677788 799999864
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
+
T Consensus 137 P 137 (288)
T cd00954 137 P 137 (288)
T ss_pred c
Confidence 4
No 158
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=60.75 E-value=81 Score=24.84 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
+..+.|.+.+.+.+.|.|.+|.+..-..+ ..-.+.++|-.+.+.||++.|...
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~--~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEE--NVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHH--HHHHHHHHHHhhcCCCEEEecCCh
Confidence 45778899999999999999976432222 234566667778899999998753
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.63 E-value=50 Score=22.40 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=41.1
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC--CcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV--CPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~--~pVliv 189 (197)
+...++..|.++. .+-..-+.+.+.+.+.+.++|+|++.......... .....+.+-...+ +++++-
T Consensus 19 ~~~~l~~~G~~V~-~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~--~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 19 VARALRDAGFEVI-DLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTL--MKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHcCCCCCeEEEE
Confidence 4455666776662 12233578899999999999999998774444432 2344454444433 445544
No 160
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=59.59 E-value=86 Score=25.02 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+.++.+.+.+.. .+.+-..+...+. .-.+.+.+++.++|.|++..........--+-..-+.|...+++||++..
T Consensus 55 r~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 55 HEAVIEAVVEAVNG-RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred HHHHHHHHHHHhCC-CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33444555554432 2333333322233 44555778999999999987654332222222445667778899999985
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
.+
T Consensus 134 ~P 135 (284)
T cd00950 134 VP 135 (284)
T ss_pred Ch
Confidence 43
No 161
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=59.47 E-value=17 Score=29.87 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCC-CchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGL-GKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~-~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+....++..+ ++|+||+|-.+. +.+--.+.-.-..+.+++++||++.|.+-
T Consensus 164 ~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 164 PSREVLEAIE--KADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred CCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 4567888888 899999997542 23323333333445667789999999764
No 162
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=59.11 E-value=91 Score=25.11 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..++++.+.+.+.. .+.+-..+-..+..+. +.+.+++.++|.+++-.........--+-..-+.|+..++.||++..
T Consensus 59 r~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 59 KKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred HHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 33445555555542 2444333333344444 45678999999999987654332221122344567778899999996
Q ss_pred C
Q 046290 191 P 191 (197)
Q Consensus 191 ~ 191 (197)
-
T Consensus 138 ~ 138 (293)
T PRK04147 138 I 138 (293)
T ss_pred C
Confidence 4
No 163
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=59.06 E-value=1.1e+02 Score=25.75 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=21.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+||+|++++.-.|.-|+-...+- |-+++.+|..--
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~--------------G~~V~Gv~m~~~ 35 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ--------------GYDVIGVTMRNW 35 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC--------------T-EEEEEEEE-S
T ss_pred CeEEEEccCCHHHHHHHHHHHhh--------------cccceEEEEEEe
Confidence 58999999998887654444443 788988887544
No 164
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=58.84 E-value=66 Score=24.72 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhH-hcCCceEEEEecCC------------hhhHHHHHHHHcC-CCEEEEccCCCCc-hhhhhccchhHHH
Q 046290 114 AALLSRALQMCK-DKMVKAESLVLEGD------------PKDMICQSAEQMH-IDLLVVGSRGLGK-IKRAFLGSVSDYC 178 (197)
Q Consensus 114 ~~~l~~~~~~~~-~~~v~~~~~~~~g~------------~~~~I~~~a~~~~-~dllVlG~~~~~~-~~~~~~gs~~~~l 178 (197)
...++.+.+.+. ..|.+++...+..+ ..+.|++..+... -|.|++...-... -..++-+-+.+.+
T Consensus 109 ~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el 188 (204)
T PF04459_consen 109 YPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEEL 188 (204)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHH
Confidence 345555555552 22566655544422 3566666655433 4899998753322 2233447788999
Q ss_pred hhcCCCcEEEECCCC
Q 046290 179 AHHAVCPIIIVKPPK 193 (197)
Q Consensus 179 l~~~~~pVliv~~~~ 193 (197)
.....+||.+|+...
T Consensus 189 ~~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 189 EERLGVPVIVVRGPG 203 (204)
T ss_pred HHHhCCcEEEeCCCC
Confidence 999999999998754
No 165
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.80 E-value=1.1e+02 Score=25.59 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHH---HHHHHHcCCCEEEEccCCCCchhhhhccc
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMI---CQSAEQMHIDLLVVGSRGLGKIKRAFLGS 173 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I---~~~a~~~~~dllVlG~~~~~~~~~~~~gs 173 (197)
...+++..+.++.|+++-..- .| |++..+ ++.|+..++|+|++-+.||-..+..++..
T Consensus 181 aAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~E 242 (340)
T COG0552 181 AAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDE 242 (340)
T ss_pred HHHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHH
Confidence 345556666666788776643 45 765444 45688889999999999987766656543
No 166
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=58.71 E-value=1.1e+02 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+.++|.+.++.+|+-|...
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCH
Confidence 45677889999999999999864
No 167
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=58.35 E-value=70 Score=25.12 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhh
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKR 168 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~ 168 (197)
+..-+.+..+++.+.+.|++++...-+ -+..+.|..++....+|+|-+=+...+++.+
T Consensus 119 ~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~n 177 (248)
T PF07476_consen 119 EAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINN 177 (248)
T ss_dssp HHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhh
Confidence 455567888889999999988775554 4899999999999999999998887776654
No 168
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=57.77 E-value=53 Score=27.49 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh----hh------------ccchhHHHhhcC
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR----AF------------LGSVSDYCAHHA 182 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~----~~------------~gs~~~~ll~~~ 182 (197)
+...+.+.+.-+-..-..+ ...++|++.|++.+..+|+..+.+...... .. +......+..++
T Consensus 12 ~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 12 MFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 3334444444333333344 789999999999999999988765322110 11 456677888999
Q ss_pred CCcEEEE
Q 046290 183 VCPIIIV 189 (197)
Q Consensus 183 ~~pVliv 189 (197)
++||.+-
T Consensus 92 ~VPValH 98 (350)
T PRK09197 92 GVPVILH 98 (350)
T ss_pred CCCEEEE
Confidence 9998765
No 169
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.54 E-value=1e+02 Score=24.90 Aligned_cols=78 Identities=15% Similarity=0.025 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+.. -.+.+.+++.++|.+++..........--+-..-+.|...+ +.||++.+
T Consensus 57 ~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn 135 (290)
T TIGR00683 57 KEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYS 135 (290)
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3445555555432 24444444333443 45557799999999999775433322211223334566666 69999996
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
.+
T Consensus 136 ~P 137 (290)
T TIGR00683 136 IP 137 (290)
T ss_pred Cc
Confidence 54
No 170
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=57.28 E-value=44 Score=24.09 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC----CCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG----LGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~----~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
.++.|.+.+++++++.||+|-.- ..+......-..++.+-.+.++||..+-+..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERl 98 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERL 98 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 67899999999999999999753 2222222334566777778889999886543
No 171
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.97 E-value=98 Score=24.58 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+.++.+.+.+.. .+.+-..+...+. .-.+.+.+++.++|-+++..........--+-..-..+...++.|+++..
T Consensus 52 r~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 52 RKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred HHHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34455555555442 3444343333344 44555678999999999987654432222223444567777899999986
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
.+
T Consensus 131 ~P 132 (281)
T cd00408 131 IP 132 (281)
T ss_pred Cc
Confidence 44
No 172
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=56.91 E-value=67 Score=22.70 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=29.6
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCch
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKI 166 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~ 166 (197)
.++..|.++.. +-...+.+.+++.|.++++|+|.+.+--.+..
T Consensus 22 ~L~~~GfeVid-LG~~v~~e~~v~aa~~~~adiVglS~L~t~~~ 64 (128)
T cd02072 22 AFTEAGFNVVN-LGVLSPQEEFIDAAIETDADAILVSSLYGHGE 64 (128)
T ss_pred HHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccCCH
Confidence 44566765522 22235789999999999999999977543433
No 173
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=56.65 E-value=22 Score=25.85 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-------CCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-------AVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-------~~~pVliv~~~ 192 (197)
..+.|.++.++++.|+|++|..+.. .+.+...+ ..++.+ .++||++|.+.
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g~~~~--s~~l~~~v-~~~v~~~~~~~~~~~i~V~~v~~~ 107 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGGNSRE--SRKLYDDV-RDIVEELDEDEQMPPIPVVIVDDE 107 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--SSTH--HHHHHHHH-HHHHHHTTB-TTS-B--EEE---T
T ss_pred HHHHHHHHHHHcCCeEEEEcCCChh--HHHHHHHH-HHHHHHhhhcccCCCceEEEECcH
Confidence 3466677788888888888654322 12222222 223322 25888888764
No 174
>PRK05406 LamB/YcsF family protein; Provisional
Probab=56.35 E-value=1e+02 Score=24.52 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 106 RKSQEENSAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+++.......+..+...++..|.++...--+| ..++.|++.++..+.++++++..+
T Consensus 81 ~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~ 147 (246)
T PRK05406 81 PEELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG 147 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 456666777777788888999898886654454 357899999999999999998543
No 175
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=56.11 E-value=65 Score=26.17 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=40.3
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEE
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.-...+++++.|++.+..+|+..+.+.-. .....+.+....+..++++||.+-
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValH 80 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34789999999999999999987765321 112234677888899999999875
No 176
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=55.91 E-value=85 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.7
Q ss_pred hHHHHHHHHcCCCEEEEccCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~ 162 (197)
..+..+|++.+++.|++|.+.
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~ 121 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCE 121 (201)
T ss_pred HHHHHHHHHCCCCEEEEEecc
Confidence 456688999999999999864
No 177
>PRK00074 guaA GMP synthase; Reviewed
Probab=55.79 E-value=1.5e+02 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=28.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++++|++.+...|..++..+.+.+ +.++..+|+...
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l-------------g~~v~av~vd~g 251 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI-------------GDQLTCVFVDHG 251 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh-------------CCceEEEEEeCC
Confidence 4789999999999988777776551 567999999544
No 178
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=55.70 E-value=60 Score=24.95 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRA 120 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (197)
.|.+.-|++.|+++- -+.+--+++.+.+-+. ..++.+..+
T Consensus 39 NPF~eIAvEEAvrlK---------Ek~l~eeviavs~G~a-------------------------------qs~~ilRt~ 78 (254)
T KOG3180|consen 39 NPFCEIAVEEAVRLK---------EKKLAEEVIAVSIGPA-------------------------------QSQEILRTA 78 (254)
T ss_pred CchHHHHHHHHHhHh---------hhhhhheEEEEecCcc-------------------------------chHHHHHHH
Confidence 477788999999983 2334455555555322 223344444
Q ss_pred HHHhHhcCCceEEE---EecC-ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 121 LQMCKDKMVKAESL---VLEG-DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 121 ~~~~~~~~v~~~~~---~~~g-~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...-.+.++.++.. .+.- .+++.+...++..+.||+.+|-+.
T Consensus 79 LA~Gadr~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQA 124 (254)
T KOG3180|consen 79 LAKGADRGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQA 124 (254)
T ss_pred HhccCCceeEEecCchhhccchHHHHHHHHHHHhhcCCEEEEcccc
Confidence 44444445544422 1112 578889999999999999999864
No 179
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=55.65 E-value=1.2e+02 Score=25.41 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=59.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChh--hHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSS--MVESVRK 107 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 107 (197)
+.++|+|+..+.-.|.-++....+. +-+|..+|..--.. .+.... -.+.+ .+....+
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q--------------GyeViGl~m~~~~~-----~~~~~C--~s~~d~~da~~va~ 60 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ--------------GYEVIGLFMKNWDE-----DGGGGC--CSEEDLRDAERVAD 60 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHc--------------CCeEEEEEEEeecc-----CCCCcC--CchhHHHHHHHHHH
Confidence 3679999999998777644333333 88899888744331 000000 00001 0111111
Q ss_pred H----------HHHHHHHHHHHHHHHhHhcCCceEEEEecC--ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 108 S----------QEENSAALLSRALQMCKDKMVKAESLVLEG--DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 108 ~----------~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+ .++.-+..++.+..... +|-+...-+.+. --...+++++.+.++|.|+.|..-
T Consensus 61 ~LGIp~~~vdf~~~y~~~V~~~f~~~Y~-~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYa 126 (356)
T COG0482 61 QLGIPLYVVDFEKEFWNKVFEYFLAEYK-AGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYA 126 (356)
T ss_pred HhCCceEEEchHHHHHHHHHHHHHHHHh-CCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 1 12222333344444433 244444444443 246788899999999999999854
No 180
>PRK13054 lipid kinase; Reviewed
Probab=55.64 E-value=1e+02 Score=24.91 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEECCC
Q 046290 119 RALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIVKPP 192 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv~~~ 192 (197)
++...+.+.+++++..... .+-+..+.+.+...++|.||+.. |.+.+. .++..++.. .++|+-++|..
T Consensus 22 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~-----evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 22 EAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGG-GDGTIN-----EVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEEC-CccHHH-----HHHHHHHhhccCCCCcEEEEeCC
Confidence 3444566677766543332 23355566555556788877653 333333 334445432 35899999853
No 181
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=55.60 E-value=31 Score=28.97 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEecCC
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLEGD 139 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~ 139 (197)
..+...+.+..+.+.+.+..+ ...+..||
T Consensus 21 r~~d~~~~f~~~l~~a~~~~v--D~vliAGD 49 (390)
T COG0420 21 RLEDQKKAFDELLEIAKEEKV--DFVLIAGD 49 (390)
T ss_pred chHHHHHHHHHHHHHHHHccC--CEEEEccc
Confidence 334455555556666665544 34445554
No 182
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=55.46 E-value=54 Score=26.59 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
.+.+.+.+.-+-..-..+ ...+++++.|++.+.-+|+..+.+.....+ ..+......+..++++||.+-
T Consensus 10 l~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 10 LDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred HHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 334444443333333334 689999999999999999998765322222 245677788889999998765
No 183
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.41 E-value=1.1e+02 Score=24.87 Aligned_cols=79 Identities=10% Similarity=-0.034 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEE
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIV 189 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv 189 (197)
..+.++.+.+.+.. .+.+-..+...++ +-.+.+.|++.++|-+++-.........--+-..-+.|...+ +.||++.
T Consensus 63 r~~v~~~~~~~~~g-rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 63 KQAFVATVVETVAG-RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 33444455554432 3555444443344 445557799999999888876433322211223335677788 5999999
Q ss_pred CCC
Q 046290 190 KPP 192 (197)
Q Consensus 190 ~~~ 192 (197)
+.+
T Consensus 142 n~P 144 (309)
T cd00952 142 ANP 144 (309)
T ss_pred cCc
Confidence 643
No 184
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=55.19 E-value=1.1e+02 Score=24.54 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=43.9
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+.++.+.+.+.. .+.+-..+...+..+ .+.+.+++.++|.+++..........--+-..-..|...++.||++...+
T Consensus 55 ~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 55 KVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 344444544432 244433333334444 45577899999999998765433222212233455777789999998643
No 185
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=54.98 E-value=1.1e+02 Score=24.43 Aligned_cols=60 Identities=10% Similarity=0.251 Sum_probs=31.1
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC---CCchhhhhccc-hhHHHhhcCCCcEEEECC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG---LGKIKRAFLGS-VSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~---~~~~~~~~~gs-~~~~ll~~~~~pVliv~~ 191 (197)
.+.|+++.... . .++..+.+. ++|.+++|+.. .+++-.. .|+ ..--+.++.++||+++-+
T Consensus 155 ~~~gi~v~~i~-d----~~~~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 155 AEAGIPVTLIP-D----SAVGYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHTT-EEEEE--G----GGHHHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHHHHHHHHHTT-EEEEE--
T ss_pred hhcceeEEEEe-c----hHHHHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHHHHHHHHhhCCCEEEEcc
Confidence 44677765432 2 334455552 59999999974 2223222 243 333456777899999954
No 186
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.78 E-value=1.1e+02 Score=24.66 Aligned_cols=78 Identities=17% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+...+..+. +.+.+++.++|.+++..........--+-..-..|...+ +.||++..
T Consensus 56 ~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 56 KQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred HHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 3444444444432 3444433433355444 557799999999999987544433222234445677788 79999985
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
-+
T Consensus 135 ~P 136 (294)
T TIGR02313 135 IP 136 (294)
T ss_pred Cc
Confidence 43
No 187
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.34 E-value=54 Score=25.52 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=45.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
.+.+..+..++.|++.-..+.-+-+.+.|..+.. .+|+|.+=+-..+.-.+.|+.++.++|
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccCHHHHHHH
Confidence 4455666667778888887777889999999999 899988877766655556666666655
No 188
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.28 E-value=51 Score=24.30 Aligned_cols=81 Identities=20% Similarity=0.100 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec--CCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 046290 45 FNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE--PFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQ 122 (197)
Q Consensus 45 ~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (197)
..-++.++++ |+..|++...+|... ... ....+...+...+.+..+.+
T Consensus 70 ~~~~~~~i~~----------a~~lg~~~i~~~~g~~~~~~--------------------~~~~~~~~~~~~~~l~~l~~ 119 (213)
T PF01261_consen 70 LEYLKKAIDL----------AKRLGAKYIVVHSGRYPSGP--------------------EDDTEENWERLAENLRELAE 119 (213)
T ss_dssp HHHHHHHHHH----------HHHHTBSEEEEECTTESSST--------------------TSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHhCCCceeecCccccccc--------------------CCCHHHHHHHHHHHHHHHHh
Confidence 4455555666 666699998888641 111 01123555666778888888
Q ss_pred HhHhcCCceEEEEecCCh---h---hHHHHHHHHcCCCE
Q 046290 123 MCKDKMVKAESLVLEGDP---K---DMICQSAEQMHIDL 155 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~---~---~~I~~~a~~~~~dl 155 (197)
.+++.|+.+..+...+.. . +.+.+++++.+.+-
T Consensus 120 ~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 120 IAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp HHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred hhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 888889887766655433 2 88888888777654
No 189
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.21 E-value=1.1e+02 Score=24.48 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.+.+.+.. .+.+-..+...+. .-.+.+.+++.++|-+++..........--+-..-+.|...++.||++..-
T Consensus 57 ~~~~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 57 EELIRAVVEAVNG-RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred HHHHHHHHHHhCC-CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3344555554432 3444444444344 444557789999999999776543322211224445677788999999854
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
+
T Consensus 136 P 136 (292)
T PRK03170 136 P 136 (292)
T ss_pred c
Confidence 3
No 190
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=54.18 E-value=99 Score=23.82 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=48.8
Q ss_pred EEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEE-EEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHH
Q 046290 36 VAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILT-IVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSA 114 (197)
Q Consensus 36 v~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~-lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (197)
+.+.+...|.-++.++.+. +-+++ ++++.......+... .
T Consensus 2 vl~SGGkDS~~al~~a~~~--------------G~~v~~l~~~~~~~~~~~~~~-------------------------~ 42 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEE--------------GHEVRCLITVVPENEESYMFH-------------------------T 42 (218)
T ss_pred eeecCcHHHHHHHHHHHHc--------------CCEEEEEEEeccCCCCccccC-------------------------C
Confidence 5667788888888777776 66775 556654321110000 0
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC---C----hhhHHHHHHHHcCCCEEEEccCCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG---D----PKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g---~----~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
..++.+...++..|++....-..+ + ....+.+.+++ +++.||.|....
T Consensus 43 ~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~s 97 (218)
T TIGR03679 43 PNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIAS 97 (218)
T ss_pred CCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCccc
Confidence 122334555666677665444343 1 23444444443 899999998653
No 191
>PRK13059 putative lipid kinase; Reviewed
Probab=54.07 E-value=1.2e+02 Score=24.52 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~~ 192 (197)
.++++...+...|.++...... ++-.+...+.+ ..++|.||+. .|-+.+ ..+++.+++. .++|+-|+|-.
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~-GGDGTv-----~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDI-DESYKYILIA-GGDGTV-----DNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHh-hcCCCEEEEE-CCccHH-----HHHHHHHHhcCCCCcEEEECCC
Confidence 3445556666667665432222 32233333333 4567877654 333333 3445556543 46899999853
No 192
>PRK08349 hypothetical protein; Validated
Probab=53.58 E-value=94 Score=23.36 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.1
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
+++|++.|+..|..++..+... +.+++.+|+..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~--------------g~~v~av~~d~ 34 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR--------------GVEVYPVHFRQ 34 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc--------------CCeEEEEEEeC
Confidence 6899999999998888655555 78999999964
No 193
>PRK12569 hypothetical protein; Provisional
Probab=53.15 E-value=1.1e+02 Score=24.20 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 106 RKSQEENSAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+++.+.....+..+...++..|.++...--+| ..++.|++.++..+.++++++..+
T Consensus 84 ~~el~~~v~yQigaL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 84 PQELVNDVLYQLGALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 456666677777788888999888876554443 357899999999999999988543
No 194
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=52.86 E-value=62 Score=21.92 Aligned_cols=64 Identities=8% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.++.++..|.+++..-... ..+.+... ++|++.+|-+-+ +.-...+++.....+||-+++.
T Consensus 18 V~Km~~aA~~kg~~~~I~A~s~---~e~~~~~~--~~DvvLlGPQv~------y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 18 VTKMKKAAESKGKDVTIEAYSE---TELSEYID--NADVVLLGPQVR------YMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHHhCCCceEEEEech---hHHHHhhh--cCCEEEEChHHH------HHHHHHHHHhcccCCCeEEeCH
Confidence 3445555566777776544332 34444444 899999996532 2234456778888899998875
No 195
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=52.76 E-value=91 Score=25.33 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=47.0
Q ss_pred HHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCch-h-hhhccchhHHHhhcC--CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKI-K-RAFLGSVSDYCAHHA--VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~-~-~~~~gs~~~~ll~~~--~~pVliv 189 (197)
+.+.+++.+.-+-..-. .-+..+++++.|++.+.-+|+..+.+.... . -..+.........++ ++||.+-
T Consensus 9 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lH 83 (288)
T TIGR00167 9 LLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALH 83 (288)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence 33444444443333333 347899999999999999999887754322 1 124567777888888 8898764
No 196
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.63 E-value=20 Score=27.42 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEcc
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~ 160 (197)
.-+.++++++...++|..+...+ .|.....-...+.+.++|.+|+|+
T Consensus 149 ~~~KI~~l~~~~~~~~~~~~I~v-DGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 149 VLEKIRELRKLIPENGLDFEIEV-DGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHHHTCGSEEEE-ESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHHHhcCCceEEEE-ECCCCHHHHHHHHHcCCCEEEECH
Confidence 34455566677777676665544 666555555555566999999996
No 197
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=52.58 E-value=1.2e+02 Score=25.41 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred ccEEEEEeCC-C-HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEE-EEeecCCccccc-----ccCCcCcccccChhhH
Q 046290 31 KMKVMVAIDE-S-AESFNALKWALDNLYGIVGFTPEAGGGGGILTI-VHVQEPFQRFVL-----PALSTSSAFYATSSMV 102 (197)
Q Consensus 31 ~~~Ilv~vd~-s-~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~l-v~v~~~~~~~~~-----~~~~~~~~~~~~~~~~ 102 (197)
-++++|.+.+ | ..-..+++||.++... +......+.+ +.++-..+.... ...+...+.+
T Consensus 46 d~rllvIvGPCSIhd~~~a~eyA~rLk~l-------~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf------ 112 (344)
T TIGR00034 46 DDRLLVVIGPCSIHDPEAAIEYATRLKAL-------REELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSF------ 112 (344)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHH-------HHhhhcceEEEEEeccccCCCccccccccCCCCcCCCC------
Confidence 3567777765 3 3346788888887433 3334445553 334333222110 0001000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC
Q 046290 103 ESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA 182 (197)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~ 182 (197)
+. ++.-+.+.++.....+.|+.+-+.+..-...+.+.++. +..-+|++.-- . .+-+++...+
T Consensus 113 -----~i-~~GL~~~R~ll~~i~~~GlPvatE~ld~~~~~y~~Dli-----sw~aIGARt~e---s----q~hRelaSgl 174 (344)
T TIGR00034 113 -----RI-NHGLRIARKLLLDLVNLGLPIAGEFLDMISPQYLADLF-----SWGAIGARTTE---S----QVHRELASGL 174 (344)
T ss_pred -----CH-HHHHHHHHHHHHHHHHhCCCeEEEecCcCcHHHHHHHH-----hhccccCcccc---C----HHHHHHHhCC
Confidence 01 22333344444334777999988888765544443332 23367766422 1 1226677788
Q ss_pred CCcEEEECCC
Q 046290 183 VCPIIIVKPP 192 (197)
Q Consensus 183 ~~pVliv~~~ 192 (197)
+|||.+=++.
T Consensus 175 ~~PVgfKngt 184 (344)
T TIGR00034 175 SCPVGFKNGT 184 (344)
T ss_pred CCceEecCCC
Confidence 9999876543
No 198
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.48 E-value=71 Score=27.64 Aligned_cols=54 Identities=19% Similarity=0.436 Sum_probs=31.1
Q ss_pred EecC-ChhhHHHHHH----HHcCCCEEEEccCCCCchhhhh-cc-chhHHHhhcCCCcEEEE
Q 046290 135 VLEG-DPKDMICQSA----EQMHIDLLVVGSRGLGKIKRAF-LG-SVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 135 ~~~g-~~~~~I~~~a----~~~~~dllVlG~~~~~~~~~~~-~g-s~~~~ll~~~~~pVliv 189 (197)
.+.| +....|++.. +...+|+||+|..| +.+.+++ |. ...-+-+..+++||+--
T Consensus 171 ~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 171 LVQGEGAAEEIVEAIERANQRGDVDVLIVARGG-GSIEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred cccCCCcHHHHHHHHHHhhccCCCCEEEEecCc-chHHHHhccChHHHHHHHHhCCCCeEee
Confidence 3346 5556665543 33349999999655 5555532 22 23334466778998754
No 199
>PRK13055 putative lipid kinase; Reviewed
Probab=52.21 E-value=1.3e+02 Score=24.70 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHhcCCceEEEEec--CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLE--GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~--g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~ 190 (197)
.+.+.++...+.+.+++++..... +.-+..+.+.+...++|+||+.. |-+.+. .+++.++.. ...|+-|+|
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTl~-----evvngl~~~~~~~~LgiiP 92 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAG-GDGTIN-----EVVNGIAPLEKRPKMAIIP 92 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEEC-CCCHHH-----HHHHHHhhcCCCCcEEEEC
Confidence 345566667777778776654443 23456666666566788887653 333333 333444432 346788888
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
-.
T Consensus 93 ~G 94 (334)
T PRK13055 93 AG 94 (334)
T ss_pred CC
Confidence 53
No 200
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=51.31 E-value=64 Score=20.80 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCC-c--hhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLG-K--IKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~-~--~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
..+.|.+..++.+++.|++|..+.- + ...+- -+..+.+-++.++||.++.+...
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~nDa~s 95 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELLKERFNLPVVLVDERLA 95 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEeCCcc
Confidence 4566666666667888888865421 1 11111 34445555667899999987544
No 201
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=51.16 E-value=74 Score=25.36 Aligned_cols=64 Identities=16% Similarity=0.339 Sum_probs=36.6
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccchh-HHHhhcCCCcEEEECC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSVS-DYCAHHAVCPIIIVKP 191 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~~-~~ll~~~~~pVliv~~ 191 (197)
+.+.+.+.|+++.. +..+. +..+.. ++|.+++|+..- ++.-.. .|+.. .-+.++.++||+++-.
T Consensus 126 ~a~~L~~~GI~vtl-i~Dsa----~~~~m~--~vd~VlvGAd~V~~nG~v~nk-vGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 126 MAKLLVKSGIDVVL-LTDAS----MCEAVL--NVDAVIVGSDSVLYDGGLIHK-NGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHCCCCEEE-EehhH----HHHHHH--hCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEEee
Confidence 33344556887743 33332 222233 699999999762 223222 34433 3445777899999854
No 202
>PRK13337 putative lipid kinase; Reviewed
Probab=51.03 E-value=1.3e+02 Score=24.27 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECCC
Q 046290 117 LSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKPP 192 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~~ 192 (197)
+.++...+.+.++++...... .+-+..+.+.+...+.|+||+.. |-+.+. .+.+.++.. ...|+-++|..
T Consensus 21 ~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~G-GDGTl~-----~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 21 LPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAG-GDGTLN-----EVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEc-CCCHHH-----HHHHHHhhCCCCCcEEEECCc
Confidence 334455566677766544433 34455555555555678777653 333332 333444322 34688888853
No 203
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=50.75 E-value=85 Score=25.87 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=38.6
Q ss_pred HHHHHHHHhHhcCCceEEEEec-C--ChhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLE-G--DPKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~-g--~~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++.+.++..+ .+...+.. + +..+.+.+.+++.++|.|| +|...- ..++..+.....+|++.||.
T Consensus 40 ~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~--------~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 40 AGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGRV--------IDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCchH--------HHHHHHHHHhcCCCEEEecC
Confidence 3444455555555 44333322 2 2456777788888999888 653211 22333333345789999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 111 T~ 112 (339)
T cd08173 111 AA 112 (339)
T ss_pred cc
Confidence 54
No 204
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=50.71 E-value=92 Score=25.15 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=45.7
Q ss_pred HHHhHhcCCceEEE-EecCChhhHHHHHHHHcCCCEEEEccCCCCch-h-hhhccchhHHHhhcCC-CcEEEEC
Q 046290 121 LQMCKDKMVKAESL-VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKI-K-RAFLGSVSDYCAHHAV-CPIIIVK 190 (197)
Q Consensus 121 ~~~~~~~~v~~~~~-~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~-~-~~~~gs~~~~ll~~~~-~pVliv~ 190 (197)
.+.+.+.+.-+-.. +..-+..+++++.|++.+..+|+.-+.+.... . ...+......+..+++ +||.+--
T Consensus 8 l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhl 81 (282)
T TIGR01859 8 LQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHL 81 (282)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEEC
Confidence 33344444333333 33347899999999999999999877653322 1 1234677778888888 8987753
No 205
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=50.57 E-value=37 Score=27.55 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
+.+.+.+.+.-+-..-..+ +..+.+++.|++.+..+|+.-+.+...... ..+......+.+++++||.+-
T Consensus 8 ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 8 LLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 3344444444333333344 789999999999999999988765433332 345678889999999999763
No 206
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.57 E-value=64 Score=25.90 Aligned_cols=71 Identities=7% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CC-cEEEECCC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VC-PIIIVKPP 192 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~-pVliv~~~ 192 (197)
...+...++++.......+..+.|....+..+.|+|++-+.|+.......+....+ +++.. +. .+|+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~-~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 123 QDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQVEPDYICLTLSAS 195 (270)
T ss_pred HHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHH-HHhhhCCCeEEEEEcCc
Confidence 33344445544322111234444444444457899999999887654444444433 33222 22 35566643
No 207
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=50.41 E-value=93 Score=22.40 Aligned_cols=77 Identities=25% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhHhcCC---ceEEEEecC--ChhhHHHHHHHHcCCCEEE-Ecc--CCCCchhhhhccchhHHHhhc-
Q 046290 111 ENSAALLSRALQMCKDKMV---KAESLVLEG--DPKDMICQSAEQMHIDLLV-VGS--RGLGKIKRAFLGSVSDYCAHH- 181 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v---~~~~~~~~g--~~~~~I~~~a~~~~~dllV-lG~--~~~~~~~~~~~gs~~~~ll~~- 181 (197)
.-.+.+++.+.+.+...|+ +++.....| +..-.+.++++..++|.+| +|. +|.+.-......++++.+++-
T Consensus 16 ~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~ls 95 (144)
T PF00885_consen 16 EITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLS 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHh
Confidence 3456677778888888887 777877888 5677777888887888765 563 565554455556666655432
Q ss_pred --CCCcEE
Q 046290 182 --AVCPII 187 (197)
Q Consensus 182 --~~~pVl 187 (197)
...||.
T Consensus 96 l~~~~PV~ 103 (144)
T PF00885_consen 96 LEYGIPVI 103 (144)
T ss_dssp HHHTSEEE
T ss_pred ccCCccEE
Confidence 256664
No 208
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=50.35 E-value=1.1e+02 Score=23.15 Aligned_cols=68 Identities=7% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC---CcEEEEC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV---CPIIIVK 190 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~---~pVliv~ 190 (197)
+...++..|.++ ..+-.+-+.+.+++.+++.++|+|.+.......... +....+.+-...+ ++|++--
T Consensus 102 v~~~l~~~G~~v-i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 102 VATMLEANGFEV-IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred HHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEEC
Confidence 344556667665 212234578999999999999999998865444433 3455555544432 5565543
No 209
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.28 E-value=1.2e+02 Score=23.70 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccch---hHHHhhcCCCcEEE
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSV---SDYCAHHAVCPIII 188 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~---~~~ll~~~~~pVli 188 (197)
...++.+.+++.|++.-..+-.....+.|...++...--+.+|+..+.++.+..+..++ .+++-...++|+++
T Consensus 117 e~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 117 EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 45678888888888776655555566666666663333445666665554443233333 33344444688776
No 210
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=50.27 E-value=66 Score=25.06 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
+.++.+..++.|+++-..+-.+.+.+.+..+.. .+|+|.+=+-..+.-.+.|+.+..+++
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PGf~GQ~fi~~~l~KI 158 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPGFGGQAFIPSALDKL 158 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccccHHHHHHH
Confidence 455667777788888777777788899998988 888777766655544444555555544
No 211
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=50.08 E-value=76 Score=27.41 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC---chhhhh--------
Q 046290 102 VESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG---KIKRAF-------- 170 (197)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~---~~~~~~-------- 170 (197)
..+.++...+....+++++.+.+...|.++.+---..+..+-|-+.+.+.+.+.||.+-+--+ ++...+
T Consensus 52 ~~eik~~~lenLd~~l~~~~~~v~~~Gg~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ 131 (459)
T COG1139 52 AREIKLHVLENLDEYLEQLEENVTRNGGHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVW 131 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEE
Confidence 344556666778888888888888888877553323367788888899999999999865311 222222
Q ss_pred ccchhHHHhhcCC-CcEEEECC
Q 046290 171 LGSVSDYCAHHAV-CPIIIVKP 191 (197)
Q Consensus 171 ~gs~~~~ll~~~~-~pVliv~~ 191 (197)
-....+.|++-+. -|.-||-|
T Consensus 132 ETDLGE~IlQl~~~~PsHIV~P 153 (459)
T COG1139 132 ETDLGELILQLAGEPPSHIVAP 153 (459)
T ss_pred EccHHHHHHHhcCCCCcceecc
Confidence 2345566666554 56555543
No 212
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=50.01 E-value=33 Score=28.05 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC-CCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG-LGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~-~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+....++..+ ++|+||+|-.. .+.+...+.-.-..+.++++++|++.|.+-
T Consensus 173 ~~p~~l~AI~--~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni 224 (300)
T PF01933_consen 173 ANPEALEAIE--EADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNI 224 (300)
T ss_dssp B-HHHHHHHH--H-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SS
T ss_pred CCHHHHHHHH--hCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCC
Confidence 4567778888 89999999764 344444443344456777788999999764
No 213
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=49.80 E-value=90 Score=26.14 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCC-CcEEEE
Q 046290 120 ALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~-~pVliv 189 (197)
+...+.+.+.-+-..-. .-....++++.|++.+.-+|+..+.+.....+ -++......+..+++ +||.+-
T Consensus 9 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLH 81 (347)
T PRK13399 9 LLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLH 81 (347)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 33444444443333333 34789999999999999999998876433222 345677788888885 898764
No 214
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=49.32 E-value=89 Score=25.42 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCch-h-hhhccchhHHHhhcC--CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKI-K-RAFLGSVSDYCAHHA--VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~-~-~~~~gs~~~~ll~~~--~~pVliv 189 (197)
+...+.+.+.-+-..-..+ +..+++++.|++.+..+|+.-+.+.... . -..+......+..++ ++||.+-
T Consensus 9 ~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lH 83 (293)
T PRK07315 9 FVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIH 83 (293)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3334444443333333334 7899999999999999999887754322 1 123456677788877 6688764
No 215
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=49.10 E-value=94 Score=26.02 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCC-CcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~-~pVliv 189 (197)
+...+.+.+.-+-..-..+ ...++|++.|++.+.-+|+..+.+.....+ -++......+..+++ +||.+-
T Consensus 7 iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValH 79 (347)
T TIGR01521 7 LLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMH 79 (347)
T ss_pred HHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3344444444333333334 789999999999999999998876432222 345677788888886 898764
No 216
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=48.98 E-value=41 Score=27.67 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCCC-Cc-hhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRGL-GK-IKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~~-~~-~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+....++..+ ++|+||+|-.+. +. +..++..-+.+ .+++++||++.|.+-
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~gI~e-AI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSLYTSIIPNLLVPEIAE-ALRESKAPKVYVCNL 213 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhchhcCchhHHH-HHHhCCCCEEEEeCC
Confidence 34578888888 899999997542 22 33334444444 556789999999764
No 217
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=48.94 E-value=1.7e+02 Score=24.88 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
..+++|.+.+.-.|.-++.++... |.++..+|+..
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~--------------G~~v~av~~~~ 210 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKR--------------GVEIEAVHFHS 210 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHC--------------CCEEEEEEEeC
Confidence 578999999999998888777665 78999999854
No 218
>PHA02031 putative DnaG-like primase
Probab=48.85 E-value=45 Score=26.73 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=28.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
++|++++|++....+|...|+.++ ...+..+.++.+
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l----------~~~~~~v~vv~l 242 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRL----------RPLLIEGQVIIT 242 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHH----------HHcCCceEEEEC
Confidence 689999999999999888898884 334666776665
No 219
>PRK05920 aromatic acid decarboxylase; Validated
Probab=48.64 E-value=39 Score=25.95 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=28.2
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.+||++++.++..+.++++..-.| -+. |.+++++..
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L----------~~~-g~~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECL----------LAA-DYEVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHH----------HHC-CCEEEEEEC
Confidence 4689999999999988888877777 222 667777653
No 220
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=48.62 E-value=1.3e+02 Score=23.71 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=33.7
Q ss_pred HHHHHHHhHhcCCc-eEEEEecC---ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh
Q 046290 117 LSRALQMCKDKMVK-AESLVLEG---DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH 180 (197)
Q Consensus 117 l~~~~~~~~~~~v~-~~~~~~~g---~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~ 180 (197)
.+.+.+.++..|++ +....+.. .....+.+... ++|.|+++--....+.+.+.++-...+++
T Consensus 45 ~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~~l~~t~l~~~l~ 110 (250)
T TIGR02069 45 GERYITIFSRLGVKEVKILDVREREDASDENAIALLS--NATGIFFTGGDQLRITSLLGDTPLLDRLR 110 (250)
T ss_pred HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHHHHcCCcHHHHHH
Confidence 33455555666763 44433321 12244556666 88999888665555555555555544443
No 221
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=48.61 E-value=1e+02 Score=25.94 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCch-h-----h-----------hhccchhHHHhhcCC
Q 046290 122 QMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKI-K-----R-----------AFLGSVSDYCAHHAV 183 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~-~-----~-----------~~~gs~~~~ll~~~~ 183 (197)
+.+.+.+.-+-..-+. -...+++++.|++.+..+|+..+.+.... . . ..+......+..+++
T Consensus 20 ~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~ 99 (357)
T TIGR01520 20 QYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG 99 (357)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 3344444333333333 47899999999999999999987654221 1 0 114567778888999
Q ss_pred CcEEEE
Q 046290 184 CPIIIV 189 (197)
Q Consensus 184 ~pVliv 189 (197)
+||.+-
T Consensus 100 VPValH 105 (357)
T TIGR01520 100 VPVVLH 105 (357)
T ss_pred CCEEEE
Confidence 998875
No 222
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.12 E-value=98 Score=25.17 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCC--hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGD--PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~--~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+.++.+.+.+..+ +.+-.-+-..+ .+-++.+.+++.++|-+++-.........--+-..-..+...++.|+++..
T Consensus 59 r~~v~~~~v~~~~gr-vpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN 137 (299)
T COG0329 59 RKEVLEAVVEAVGGR-VPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYN 137 (299)
T ss_pred HHHHHHHHHHHHCCC-CcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 334455555555432 33333232223 356677789999999999988765544432222344567788899999986
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
-+
T Consensus 138 ~P 139 (299)
T COG0329 138 IP 139 (299)
T ss_pred Cc
Confidence 43
No 223
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.00 E-value=1.3e+02 Score=23.31 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
.+.++++...+++.++...+ .|.....=+..+.+.++|.+|+|+.
T Consensus 153 kI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 45555566565665554444 5544443444444569999999964
No 224
>PRK10481 hypothetical protein; Provisional
Probab=47.94 E-value=1.3e+02 Score=23.45 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCceEEEEecC--ChhhHHHHHHH---HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 128 MVKAESLVLEG--DPKDMICQSAE---QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 128 ~v~~~~~~~~g--~~~~~I~~~a~---~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
|+++....... ...+.+.+.++ ..++|+||+++-+.+. .....+-+.+..||+.-
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEcH
Confidence 66655433221 33446666666 5689999999987663 22455667778888753
No 225
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=47.83 E-value=1.2e+02 Score=23.23 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
|++|.+.+.-.|-.++-++... +.+++.+++....
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~--------------~~~v~al~~~YGq 35 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE--------------GYEVYALTFDYGQ 35 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH---------------SEEEEEEEESSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHc--------------CCeEEEEEEECCC
Confidence 5789999999999999999888 6789999986554
No 226
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=47.37 E-value=43 Score=26.26 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
..+.+.+.+.+.+.|.|++|.+. .+..+.++...+-+..+.||++.|...
T Consensus 20 ~~~~~~~~~~~~gtDai~VGGS~----~~~~~d~vv~~ik~~~~lPvilfPg~~ 69 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIVGGSD----TGVTLDNVVALIKRVTDLPVILFPGSP 69 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEEE-ST----HCHHHHHHHHHHHHHSSS-EEEETSTC
T ss_pred CcHHHHHHHHhcCCCEEEECCCC----CccchHHHHHHHHhcCCCCEEEeCCCh
Confidence 44566666677899999999776 222334555656666889999998754
No 227
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=47.34 E-value=1.5e+02 Score=23.86 Aligned_cols=75 Identities=12% Similarity=-0.010 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
++++.+.+.... .+.+-..+.. +. .-.+.+.+++.++|.+++-.........--+-..-..|...+++||++...
T Consensus 57 ~l~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 57 QVVRAAVEETAG-RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred HHHHHHHHHhCC-CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 344444444432 3444443433 44 344557789999999999765443322211223345677788999999863
No 228
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=46.97 E-value=1.7e+02 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=26.4
Q ss_pred eEEEEecCChhhHHHHH--HHHcCCCEEEEcc-CCCCchhhhhccchhH
Q 046290 131 AESLVLEGDPKDMICQS--AEQMHIDLLVVGS-RGLGKIKRAFLGSVSD 176 (197)
Q Consensus 131 ~~~~~~~g~~~~~I~~~--a~~~~~dllVlG~-~~~~~~~~~~~gs~~~ 176 (197)
+.+.+..|++.+.|.++ |.++++|.|.+-+ .+.|.+.....|.+++
T Consensus 149 iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~e 197 (509)
T PF09043_consen 149 IYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATTE 197 (509)
T ss_dssp EEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S-
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCCC
Confidence 44556689999999875 8889999986654 4666666666665544
No 229
>PRK08005 epimerase; Validated
Probab=46.76 E-value=81 Score=24.33 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=43.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHh
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCA 179 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll 179 (197)
+.++.+.+++.|.++-..+-.+-+.+.+..+.. .+|+|.+=+-..+.-.+.|+.+..+++-
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~--~vD~VlvMsV~PGf~GQ~f~~~~~~KI~ 155 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATPLLPYRYLAL--QLDALMIMTSEPDGRGQQFIAAMCEKVS 155 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH--hcCEEEEEEecCCCccceecHHHHHHHH
Confidence 445667777788888777777888888888888 8887777666555444556555555553
No 230
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=46.33 E-value=1.5e+02 Score=23.45 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=41.3
Q ss_pred HHHHhHhcCCceEEEEecC--ChhhHHH--HHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 120 ALQMCKDKMVKAESLVLEG--DPKDMIC--QSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g--~~~~~I~--~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+...+...|+++....--| ..-+-+. +.-+..++|.+|+-+.-.+ ....-+..-.+|||+-+|..
T Consensus 136 a~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEG--------aLPsvvagLvD~PVIavPTs 204 (254)
T COG1691 136 AAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEG--------ALPSVVAGLVDVPVIAVPTS 204 (254)
T ss_pred HHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEccccc--------chHHHHHhccCCCeEecccc
Confidence 3444556688887766666 4455555 4556668999888754322 33333555668999999974
No 231
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=46.22 E-value=50 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCC-Cc-hhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGL-GK-IKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~-~~-~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+....++..+ ++|+||+|-.+. +. +..++..-+. +.+++++||++.|.+-
T Consensus 165 ~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv~gI~-eAi~~s~a~kV~v~N~ 216 (308)
T cd07187 165 ANPEALEAIE--EADLIVYGPGSLYTSILPNLLVKGIA-EAIRASKAPKVYICNL 216 (308)
T ss_pred CCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchhHH-HHHHhCCCCEEEEecC
Confidence 4568888888 899999997542 22 2333344444 4567888999988764
No 232
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.10 E-value=96 Score=21.30 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=37.3
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
+...++..|.++.. +-...+.+.+.+.+.+.++|.|++.......... .....+.+-..
T Consensus 19 ~~~~l~~~G~~vi~-lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~--~~~~~~~L~~~ 77 (122)
T cd02071 19 IARALRDAGFEVIY-TGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTL--FPEVIELLREL 77 (122)
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHH--HHHHHHHHHhc
Confidence 44456666765532 2223678899999999999999998765433332 24444544444
No 233
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=46.09 E-value=1.5e+02 Score=23.70 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEECC
Q 046290 120 ALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIVKP 191 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv~~ 191 (197)
+...+.+.|++++..... ..-+..+.+.+...+.|.||+. .|-+.+. .+...++.. .++|+-++|-
T Consensus 19 ~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTi~-----ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 19 AVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAG-GGDGTLR-----EVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEE-cCChHHH-----HHHHHHHhhCCCCCCcEEEEcC
Confidence 344456667766544332 2345566665555677877654 3333332 344445432 3468888885
No 234
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=45.90 E-value=88 Score=25.67 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCC-CCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRG-LGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~-~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+....++..+ ++|+||+|-.+ .+.+...+.=.-..+.+++++.|++.|-|
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 35678888888 89999999764 23333333334445567788888888865
No 235
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=45.87 E-value=92 Score=21.04 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=38.7
Q ss_pred HhcCCceEEEEecCC-hhhHHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 125 KDKMVKAESLVLEGD-PKDMICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~-~~~~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
++.|++++....-.+ -...|.+..++ .++|+||--..+...-...--|...++..-...+|++.-
T Consensus 39 ~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 39 ADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 446787765433211 23668888888 999999986543321011122555566666668888753
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.55 E-value=1.1e+02 Score=21.66 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv 189 (197)
+...++..|.++.. ... ...+.+++.+.+.++|.|++.+...+... .+..+.+.+-... +...+++
T Consensus 22 v~~~l~~~GfeVi~--lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~--~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 22 IATAYADLGFDVDV--GPLFQTPEEIARQAVEADVHVVGVSSLAGGHLT--LVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred HHHHHHhCCcEEEE--CCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHH--HHHHHHHHHHhcCCCCCEEEE
Confidence 34455666765522 222 46789999999999999999876544433 2456666664432 2333444
No 237
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=45.43 E-value=1.2e+02 Score=24.74 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=45.3
Q ss_pred HHHhHhcCCceEEE-EecCChhhHHHHHHHHcCCCEEEEccCCCCch-h-hhhccchhHHHhhcCC--CcEEEE
Q 046290 121 LQMCKDKMVKAESL-VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKI-K-RAFLGSVSDYCAHHAV--CPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~-~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~-~-~~~~gs~~~~ll~~~~--~pVliv 189 (197)
.+.+.+.+.-+-.. +..-...+++++.|++.+..+|+.-+.+.... . -..+......+..+++ +||.+-
T Consensus 10 L~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lH 83 (286)
T PRK08610 10 LIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIH 83 (286)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEE
Confidence 33344444333322 33347899999999999999999987764332 1 1235677778888887 788764
No 238
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=45.34 E-value=1.4e+02 Score=22.94 Aligned_cols=41 Identities=5% Similarity=0.091 Sum_probs=26.5
Q ss_pred HHHhHhcCCceEEEEecC-----ChhhHHHHHHHHcCCCEEEEccC
Q 046290 121 LQMCKDKMVKAESLVLEG-----DPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-----~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
.+.+++.|+.+...-... ...+.+.+..++.++|++|+...
T Consensus 42 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 42 AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCc
Confidence 445667788764322111 12467788888899999999654
No 239
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=55 Score=25.93 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=34.1
Q ss_pred ccccCCC-CCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 3 KETVPGG-SGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 3 ~e~~~~~-~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
-|||-++ +.|.|.. ...|.. ..++|+.|.+...+..-..|.-.. +.+++++|-.+.
T Consensus 135 ~~fWqrGiSaCAVCD---Gaapif-----rnk~laVIGGGDsA~EEA~fLtky--------------askVyii~Rrd~ 191 (322)
T KOG0404|consen 135 GEFWQRGISACAVCD---GAAPIF-----RNKPLAVIGGGDSAMEEALFLTKY--------------ASKVYIIHRRDH 191 (322)
T ss_pred chHHhcccchhhccc---Ccchhh-----cCCeeEEEcCcHHHHHHHHHHHhh--------------ccEEEEEEEhhh
Confidence 3466666 7777762 223322 347899998876654433333333 789999987554
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.63 E-value=2.1e+02 Score=24.80 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCCEEEEccCCCCchhhhh
Q 046290 152 HIDLLVVGSRGLGKIKRAF 170 (197)
Q Consensus 152 ~~dllVlG~~~~~~~~~~~ 170 (197)
..|+||+-+.++......+
T Consensus 175 ~~DvVIIDTAGr~~~d~~l 193 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDL 193 (437)
T ss_pred cCCEEEEECCCcccchHHH
Confidence 4599999998877655443
No 241
>PRK13057 putative lipid kinase; Reviewed
Probab=44.51 E-value=1e+02 Score=24.68 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 117 LSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+.++.+.+++.|+++...... .+-+..+.+.+ ..++|+||+.. |-+. +..+++.+. ..+.|+-++|-.
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~G-GDGT-----v~~v~~~l~-~~~~~lgiiP~G 83 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGG-GDGT-----LNAAAPALV-ETGLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEEC-chHH-----HHHHHHHHh-cCCCcEEEECCC
Confidence 445666677777776554443 23344444443 34678777653 3222 234555554 347899999853
No 242
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.19 E-value=72 Score=25.15 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP 140 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~ 140 (197)
...++++.+.+.+.+ +...+..||.
T Consensus 25 ~~~l~~l~~~~~~~~--~D~lli~GDi 49 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQ--IDALLVAGDV 49 (253)
T ss_pred HHHHHHHHHHHHHcC--CCEEEECCcc
Confidence 345666666666554 3445666654
No 243
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=44.01 E-value=1.4e+02 Score=22.61 Aligned_cols=47 Identities=4% Similarity=0.085 Sum_probs=30.7
Q ss_pred ChhhHHHHHHHHcCCCEEEEc----cCCCCchhhhhccchhHHHhhcCC-CcEEEECC
Q 046290 139 DPKDMICQSAEQMHIDLLVVG----SRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKP 191 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG----~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~ 191 (197)
+-.+.....++...+|+++|. -...++. ...+++.+..+ ++++++-.
T Consensus 34 ~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt~ 85 (207)
T PRK15411 34 ETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFMA 85 (207)
T ss_pred CCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEEC
Confidence 334445566777789999999 3333322 36677777666 89888843
No 244
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=43.79 E-value=1e+02 Score=25.77 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccC-CCCchh----------------hhhccchhHHHhhcCC
Q 046290 122 QMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSR-GLGKIK----------------RAFLGSVSDYCAHHAV 183 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~-~~~~~~----------------~~~~gs~~~~ll~~~~ 183 (197)
+.+++.+.-+-..-+.+ +...++++.|++.+..+|+..+. +..... -..+......+..+++
T Consensus 6 ~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 85 (340)
T cd00453 6 QVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG 85 (340)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCC
Confidence 33444444333333344 78899999999999999998877 221111 1234567777888899
Q ss_pred CcEEEE
Q 046290 184 CPIIIV 189 (197)
Q Consensus 184 ~pVliv 189 (197)
+||.+-
T Consensus 86 VPV~lH 91 (340)
T cd00453 86 VPVILH 91 (340)
T ss_pred CCEEEE
Confidence 999875
No 245
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=43.67 E-value=2e+02 Score=24.40 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.7
Q ss_pred EEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 34 VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 34 Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
|+|++.+.-.|..++.++.+. .+.+++.+|+...
T Consensus 1 Vvva~SGGlDSsvll~~l~e~-------------~~~eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK-------------GGYEVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh-------------CCCeEEEEEEECC
Confidence 578999999999888888776 1348999988655
No 246
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=43.56 E-value=1.9e+02 Score=24.03 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchh
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIK 167 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~ 167 (197)
..++.+...+++.|.++-...+.-+ .+.+..+..+++.+++|.++.+...
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~~---~~~~LL~~yg~~y~~iG~~g~~~~~ 63 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDKD---ETEELLDLYGIDYIVIGKHGDSLYG 63 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccc---hHHHHHHHcCCCeEEEcCCCCCHHH
Confidence 4667777788888887766666553 5555666789999999998855433
No 247
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=43.50 E-value=44 Score=21.89 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHhHhcCCceEEE-EecCCh--hh---HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 122 QMCKDKMVKAESL-VLEGDP--KD---MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 122 ~~~~~~~v~~~~~-~~~g~~--~~---~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
+.+++.|+++... -..+.. .. .+.+..+..++|+||.-..+...... --|...+++.-..++|++
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 3446678874322 222332 22 49999999999998887654332211 135566667777777764
No 248
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=43.42 E-value=45 Score=21.03 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=36.5
Q ss_pred ceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 130 KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 130 ~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+....+.|+.++.=.+ +..++|++|++........... ...........++.+++.+..
T Consensus 17 ~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~~~~~~-~~~~~~~~~~~~vDi~~~~~~ 76 (93)
T cd05403 17 GVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDPLELAR-LLEELELLLGRPVDLVVLNAL 76 (93)
T ss_pred CccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCHHHHHH-HHHHHHHHhCCcEEEEECCcc
Confidence 46677888887776554 4558999999987765443221 122223344556777776654
No 249
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.30 E-value=2e+02 Score=24.06 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEec---C-C--------------hhhHHHHHHH-HcCCCEEEEccCCCCc-hhh
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLE---G-D--------------PKDMICQSAE-QMHIDLLVVGSRGLGK-IKR 168 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~---g-~--------------~~~~I~~~a~-~~~~dllVlG~~~~~~-~~~ 168 (197)
++.+..+.+.++.+.|..+|+.+-..++. | + +...+..+++ +.++|++=+-..+... ..+
T Consensus 137 ~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg 216 (340)
T PRK12858 137 INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEG 216 (340)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccc
Confidence 44566678889999999999876544211 1 1 1223333343 5889998886654321 111
Q ss_pred h-----hc-----cchhHHHhhcCCCcEEEECCCC
Q 046290 169 A-----FL-----GSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 169 ~-----~~-----gs~~~~ll~~~~~pVliv~~~~ 193 (197)
+ .. -..-.++...+++|+++.....
T Consensus 217 ~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 217 FDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred cccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 0 00 0223556777899999987654
No 250
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=43.15 E-value=65 Score=20.73 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=35.2
Q ss_pred HhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 125 KDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 125 ~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
++.|+++++.+. -++-...+.+..+...+|+||--......... --|...++..-..++|++
T Consensus 27 ~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~-~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 27 REAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPH-EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceec-cCcHHHHHHHHHcCCCee
Confidence 456777654221 12222468999999999999986543121111 124455566666666654
No 251
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=42.94 E-value=37 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=27.2
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
...+.+..++.++|.||+|.-+-+.+ ++++-....+||+
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms~l--------a~~Lq~~~gvPVI 201 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMSDL--------ADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHHHH--------HHHHHHHhCCCcc
Confidence 45666778889999999999775544 4445555556664
No 252
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.76 E-value=1.2e+02 Score=21.51 Aligned_cols=67 Identities=7% Similarity=-0.046 Sum_probs=41.7
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-C-CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-A-VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~-~~pVliv 189 (197)
+...+...|.++.. +-..-+.+.+.+.+.+.++|+|.+.....+.... +..+.+.+-.. . .+++++-
T Consensus 23 v~~~lr~~G~eVi~-LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~--~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 23 LDRALTEAGFEVIN-LGVMTSQEEFIDAAIETDADAILVSSLYGHGEID--CRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHH--HHHHHHHHHhcCCCCCeEEEE
Confidence 34455667776622 3233678999999999999999998765443332 24455555444 2 3555544
No 253
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=42.67 E-value=1.3e+02 Score=21.71 Aligned_cols=83 Identities=7% Similarity=0.009 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecC--ChhhHHHHHHHHcCCCEEEEccCCC-CchhhhhccchhHHHhhcCCCcE
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEG--DPKDMICQSAEQMHIDLLVVGSRGL-GKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllVlG~~~~-~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
.+...+.+..+++..+..|-++...+.-+ +..+.+.+.....++|-++.-.... .............+++.+.+..+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~l 93 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDL 93 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCE
Confidence 35566778888888887777776655443 3566666667768998777765432 22222234566677888888888
Q ss_pred EEECCC
Q 046290 187 IIVKPP 192 (197)
Q Consensus 187 liv~~~ 192 (197)
++++..
T Consensus 94 Vl~~~t 99 (164)
T PF01012_consen 94 VLFGST 99 (164)
T ss_dssp EEEESS
T ss_pred EEEcCc
Confidence 888764
No 254
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=42.65 E-value=58 Score=21.51 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=28.9
Q ss_pred HHHHHHhHhcCCceEEEEecCC-hhhHHH-HHHHHcCCCEEEEccCCCC
Q 046290 118 SRALQMCKDKMVKAESLVLEGD-PKDMIC-QSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g~-~~~~I~-~~a~~~~~dllVlG~~~~~ 164 (197)
+.+.+.+++.|+++........ +...+. .... .+|+||+-.....
T Consensus 19 ~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~--~Ad~vi~~~~~~~ 65 (96)
T cd05569 19 EALEKAAKKLGWEIKVETQGSLGIENELTAEDIA--EADAVILAADVPV 65 (96)
T ss_pred HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh--hCCEEEEecCCCC
Confidence 4566777888888776655542 333443 3344 8999999876543
No 255
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=42.42 E-value=1.1e+02 Score=24.01 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHHhHhcCC--ceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 117 LSRALQMCKDKMV--KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 117 l~~~~~~~~~~~v--~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
+.++.+..++.|. ++-..+-.+-+.+.|..+.. .+|+|.+=+-..+.-.+.|+.+..+++
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~f~~~~l~KI 166 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKAPSDLILDRV 166 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccccHHHHHHH
Confidence 4456666777777 77666666778899999988 788777766555444444555444444
No 256
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=42.37 E-value=1.3e+02 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHh
Q 046290 33 KVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l 54 (197)
+|+|.+.++..|..++..+.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~ 22 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREA 22 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHh
Confidence 4789999999999999999999
No 257
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.23 E-value=44 Score=28.62 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=14.4
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
|+-.+.+++.+++.++.++.+.+.+.
T Consensus 102 GdDi~~v~~~~~~~~~~vi~v~t~gf 127 (427)
T cd01971 102 GDDVGAVVSEFQEGGAPIVYLETGGF 127 (427)
T ss_pred hcCHHHHHHHhhhcCCCEEEEECCCc
Confidence 43344454444555667777766543
No 258
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=41.84 E-value=1.2e+02 Score=22.25 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=31.4
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCc----hhhhhccchhHHHhhcCCCcEEEEC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGK----IKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~----~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+..|++.-.-+...+..+....+++++++.++-++...... +..-.+-...+.+++...-||+|.=
T Consensus 29 ~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC 98 (164)
T PF03162_consen 29 ERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHC 98 (164)
T ss_dssp HHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-
T ss_pred HHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 44566665545444566777789999999999999875443 1222223334556777789999874
No 259
>PRK14561 hypothetical protein; Provisional
Probab=41.82 E-value=1.5e+02 Score=22.32 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=15.6
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWA 51 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a 51 (197)
+|+|++.++..|..++..+
T Consensus 2 kV~ValSGG~DSslll~~l 20 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILL 20 (194)
T ss_pred EEEEEEechHHHHHHHHHH
Confidence 6999999998888876644
No 260
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=41.57 E-value=1.6e+02 Score=25.40 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
-++...+.+++.++|.||+-....+.- +..-..++..++|||++....
T Consensus 51 ~~~~~~~~~~~~~~d~ii~~~~tf~~~------~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 51 EARKAAEEFNEANCDGLIVWMHTFGPA------KMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHhhcCCcEEEEcccccccH------HHHHHHHHhcCCCEEEEeCCC
Confidence 355666777777899999866543322 222334567899999996543
No 261
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=41.56 E-value=1.7e+02 Score=23.71 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=45.2
Q ss_pred HHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCch-hh-hhccchhHHHhhcCC--CcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKI-KR-AFLGSVSDYCAHHAV--CPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~-~~-~~~gs~~~~ll~~~~--~pVliv 189 (197)
.+.+.+.+.-+-..-... ...+++++.|++.+.-+|+..+.+.... .+ ..+......+..+.. +||.+-
T Consensus 10 L~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lH 83 (285)
T PRK07709 10 LNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 83 (285)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 334444443333333334 7899999999999999999987754332 11 234677888888876 687764
No 262
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=41.45 E-value=1.9e+02 Score=23.34 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+..+. .+.+-..+- ++..+ .+.+.+++.++|.+++-.........--+-..-..|...+++||++..
T Consensus 61 ~~v~~~~~~~~~g-~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 61 EQVVEIAVSTAKG-KVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHHHhCC-CCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 3344444444332 244444333 23433 466778999999999876544322221122344557777889999986
No 263
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=41.13 E-value=1.9e+02 Score=23.34 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=35.6
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccchh-HHHhhcCCCcEEEECCC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSVS-DYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~~-~~ll~~~~~pVliv~~~ 192 (197)
.+.+.|+++.. +..+.... + .+ ++|.+++|+..- +..-+. +|... --+.++..+||+++-+.
T Consensus 155 eL~~~GI~vtl-I~Dsa~~~-~---m~--~vd~VivGAD~I~~nG~v~NK-iGT~~lA~~Ak~~~vPfyV~a~~ 220 (275)
T PRK08335 155 ELEFLGIEFEV-ITDAQLGL-F---AK--EATLALVGADNVTRDGYVVNK-AGTYLLALACHDNGVPFYVAAET 220 (275)
T ss_pred HHHHCCCCEEE-EeccHHHH-H---HH--hCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEECcc
Confidence 33455887743 33333322 2 23 499999999752 222222 34433 34457778999999553
No 264
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.12 E-value=65 Score=23.12 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=22.4
Q ss_pred hHHHHHHHHcCCCEEEEccCC-CCchhhhhccchhHHHhhcC-CCcEEEECC
Q 046290 142 DMICQSAEQMHIDLLVVGSRG-LGKIKRAFLGSVSDYCAHHA-VCPIIIVKP 191 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~-~~~~~~~~~gs~~~~ll~~~-~~pVliv~~ 191 (197)
..+..+.+++++|-||+-.|. .+.+.+--.|--.+.+++-. .|+|-++++
T Consensus 51 ~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 51 FTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 444455555566666665443 22222222222333444444 355555544
No 265
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=40.80 E-value=1e+02 Score=26.44 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=9.3
Q ss_pred CCCcEEEECCCC
Q 046290 182 AVCPIIIVKPPK 193 (197)
Q Consensus 182 ~~~pVliv~~~~ 193 (197)
..+||++++..-
T Consensus 109 ~~iPVf~I~GNH 120 (405)
T TIGR00583 109 VAIPVFSIHGNH 120 (405)
T ss_pred CCCCEEEEcCCC
Confidence 579999997653
No 266
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=40.62 E-value=1.2e+02 Score=25.04 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhh----hhccchhHHHhhcC--CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKR----AFLGSVSDYCAHHA--VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~----~~~gs~~~~ll~~~--~~pVliv 189 (197)
+...+.+.+.-+-..-.. -+..+++++.|++.+.-+|+..+.+.....+ ..+.........++ ++||.+-
T Consensus 15 lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lH 91 (321)
T PRK07084 15 MFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLH 91 (321)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 333444444433333333 4889999999999999999988765322211 11334445566666 6888764
No 267
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=40.26 E-value=1.4e+02 Score=21.34 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHHhHhcCCceEEEEecCC-----hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 118 SRALQMCKDKMVKAESLVLEGD-----PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g~-----~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+...+...|+.+...+-.|+ ..+.|--+.+..+...|++=-.+-..-.+ | -..+++..++ .||++++..
T Consensus 15 ~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~-f-~~~~~~a~~~--KPVv~lk~G 90 (138)
T PF13607_consen 15 TAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRR-F-LEAARRAARR--KPVVVLKAG 90 (138)
T ss_dssp HHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHH-H-HHHHHHHCCC--S-EEEEE--
T ss_pred HHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHH-H-HHHHHHHhcC--CCEEEEeCC
Confidence 3455667777888877777774 34555555666667777776665444333 3 2444555544 999999865
Q ss_pred C
Q 046290 193 K 193 (197)
Q Consensus 193 ~ 193 (197)
.
T Consensus 91 r 91 (138)
T PF13607_consen 91 R 91 (138)
T ss_dssp -
T ss_pred C
Confidence 4
No 268
>PHA02546 47 endonuclease subunit; Provisional
Probab=40.21 E-value=81 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCCh
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDP 140 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~ 140 (197)
....++++.+.+.+.++ ...+..||.
T Consensus 24 ~~~~l~~ii~~a~~~~v--D~VliaGDl 49 (340)
T PHA02546 24 QLKFIKQAIEYSKAHGI--TTWIQLGDT 49 (340)
T ss_pred HHHHHHHHHHHHHHcCC--CEEEECCcc
Confidence 44566777777776654 344555653
No 269
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=40.20 E-value=1.5e+02 Score=22.73 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv 189 (197)
+...+...|.++.. +-..-+.+.+.+.+.+.++|+|.+...-...... +..+.+.+-... +++|++-
T Consensus 108 v~~~l~~~G~~Vi~-LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~vG 175 (213)
T cd02069 108 VGVILSNNGYEVID-LGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLIG 175 (213)
T ss_pred HHHHHHhCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEEE
Confidence 34445666765522 2233579999999999999999998765444433 245555554443 3565554
No 270
>PRK08005 epimerase; Validated
Probab=40.05 E-value=1.7e+02 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=20.1
Q ss_pred EEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 134 LVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 134 ~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
....|.+...-...+.+.++|.+|+|+.
T Consensus 166 I~VDGGI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 166 CWADGGITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 3457777666666666669999999953
No 271
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=39.88 E-value=71 Score=25.25 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=12.0
Q ss_pred HHhhcCCCcEEEECCCCC
Q 046290 177 YCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 177 ~ll~~~~~pVliv~~~~~ 194 (197)
+.|..++||+++||.+..
T Consensus 83 ~~L~~~~~p~~~vPG~~D 100 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMD 100 (255)
T ss_dssp HHHHCC-SEEEEE--TTS
T ss_pred HHHHhcCCcEEEecCCCC
Confidence 468889999999997643
No 272
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.61 E-value=1.9e+02 Score=22.98 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~~ 192 (197)
+.+.++...+...++++....... +-...+.+.+...++|+||+. .|-+.+. .+++.+..... .|+-++|..
T Consensus 19 ~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~-GGDGTl~-----~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 19 KPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAG-GGDGTIN-----EVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEE-CCCChHH-----HHHHHHhcCCCCCcEEEEcCc
Confidence 445556666677777765544433 223344444444567877764 3333332 33344444233 466678753
No 273
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.46 E-value=1.2e+02 Score=22.90 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCC-EEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 121 LQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHID-LLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~d-llVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
++.+.+.+..+...... .. ..+.+.+.+++...+ .+++|++= + |-.+..+..+.+||-+++.|.-
T Consensus 21 ~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSl-G-------G~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 21 KQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSL-G-------GFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEECh-H-------HHHHHHHHHHhCCCEEEEcCCC
Confidence 33444444444444333 12 345556666665544 88999652 2 3344556667788888887643
No 274
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=39.39 E-value=58 Score=25.81 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=30.7
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+......++++.|++|+.+....... ..-++.++....+|.+|+.+.
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG----P~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG----PTKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH----HHHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHHHHhCCCCEEEEcCC
Confidence 55556677889999999877644322 356788999999999999653
No 275
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=39.35 E-value=1.2e+02 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.6
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
.++|++|+|++...++|...+..++ ...+-.+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L----------~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEIL----------KKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHH----------HHCCCeEEEEeC
Confidence 4689999999999999998898884 334666666544
No 276
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=39.35 E-value=2e+02 Score=22.99 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=24.0
Q ss_pred ccEEEEEeCCCHH----------HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAE----------SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~----------s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
...+.|.+|+.+. .....+|...+ ++..+..+..+.+
T Consensus 13 ~s~lcvglDp~~~~~~~~~~~~~~~~~~~f~~~i----------i~~l~~~v~~vK~ 59 (261)
T TIGR02127 13 RSPLCVGLDPRLELLPEWGLPSSAAGLQAFCLRI----------IDATAEYAAVVKP 59 (261)
T ss_pred CCCEEEEECCChhhcccccccchHHHHHHHHHHH----------HHhcCCcceEEec
Confidence 4567888888764 33445777788 6666776655443
No 277
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.08 E-value=1.6e+02 Score=24.22 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCC-CcEEEE
Q 046290 122 QMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~-~pVliv 189 (197)
..+.+.+.-+-..-..+ +..+++++.|++.+.-+|+..+.+.....+ -.+......+..+++ +||.+-
T Consensus 10 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH 80 (307)
T PRK05835 10 LKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 33444443333333334 789999999999999999998765432211 234567777888886 999875
No 278
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=38.96 E-value=41 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhc
Q 046290 31 KMKVMVAIDESAESFNALKWALDNL 55 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~ 55 (197)
.++|++++|++...+.+..+....+
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l 70 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKL 70 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHH
Confidence 4789999999999988888888853
No 279
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=67 Score=22.16 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=30.3
Q ss_pred cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 151 MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 151 ~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+++.||+|+...+.+. ++.-+....++-.|-|++.|.+
T Consensus 60 e~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 60 EGPEVIVVGTGQSGMLE---LSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred cCCcEEEEecCceeEEE---eCHHHHHHHHhcCCeEEEeCCH
Confidence 49999999976554432 4677788899999999998864
No 280
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=38.58 E-value=83 Score=19.63 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhc
Q 046290 31 KMKVMVAIDESAESFNALKWALDNL 55 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~ 55 (197)
.++|+++.|.+.....+.+...+.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l 67 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELL 67 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHH
Confidence 3799999999998888887776664
No 281
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.47 E-value=1.7e+02 Score=22.05 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
+...++..|.++.. +-..-+.+.+++.+++.++|+|.+.......... +....+.+-..
T Consensus 104 v~~~l~~~G~~vi~-LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~--~~~~i~~l~~~ 162 (197)
T TIGR02370 104 VVTMLRANGFDVID-LGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG--QKDINDKLKEE 162 (197)
T ss_pred HHHHHHhCCcEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccccccCHHH--HHHHHHHHHHc
Confidence 33455666765522 2233578999999999999999998865555443 24555555544
No 282
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=38.30 E-value=2e+02 Score=22.66 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+.+..+.+.+++.|+.+.......+. .....+.....++|.+|++........ .. -+.+...++|++.+..
T Consensus 43 ~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~-----~~-l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG-----NA-VKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH-----HH-HHHHHHCCCCEEEEcc
Confidence 44555556666778766543323343 334455556678998888753321111 11 1345567899998854
No 283
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.24 E-value=57 Score=27.90 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.3
Q ss_pred HcCCCEEEEccCC
Q 046290 150 QMHIDLLVVGSRG 162 (197)
Q Consensus 150 ~~~~dllVlG~~~ 162 (197)
+.++.+|.+-+.+
T Consensus 118 ~~~~pvi~v~t~g 130 (426)
T cd01972 118 EIGIPVVALHCEG 130 (426)
T ss_pred hhCCCEEEEeCCc
Confidence 3345555555443
No 284
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.92 E-value=1.9e+02 Score=22.27 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-C---------ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-G---------DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH 180 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g---------~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~ 180 (197)
....+.+.++.+.|..+|+.+-..... | +......+.+.+.++|.|-....+ ++ ...+++..
T Consensus 105 ~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~~------~~~~~i~~ 176 (235)
T cd00958 105 REMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--DA------ESFKEVVE 176 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--CH------HHHHHHHh
Confidence 345556667777777888765432221 1 122223445777899998885321 11 33567788
Q ss_pred cCCCcEEEECC
Q 046290 181 HAVCPIIIVKP 191 (197)
Q Consensus 181 ~~~~pVliv~~ 191 (197)
.+++||++.-.
T Consensus 177 ~~~~pvv~~GG 187 (235)
T cd00958 177 GCPVPVVIAGG 187 (235)
T ss_pred cCCCCEEEeCC
Confidence 88999877643
No 285
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=37.68 E-value=1.1e+02 Score=19.54 Aligned_cols=50 Identities=6% Similarity=-0.015 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
........+...+...|+.+.......++.+.+..+-...-.=+||+|..
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECch
Confidence 34455566777778888888776655577888777776666677778854
No 286
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.54 E-value=1.7e+02 Score=24.57 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=40.1
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCC-CcEEEE
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAV-CPIIIV 189 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~-~pVliv 189 (197)
.-...+++++.|++.+.-+|+.-+.+.....+ -++......+..+++ +||.+-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH 81 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMH 81 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 44789999999999999999998876432222 245677788888886 898764
No 287
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=37.45 E-value=1.4e+02 Score=20.94 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC-----------------ChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG-----------------DPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g-----------------~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
....+.+.+.+.+++.|++++..-+.. +-.+.+.+... .+|.||+++.-.
T Consensus 15 ~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~sP~y 81 (152)
T PF03358_consen 15 NTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFASPVY 81 (152)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEeecEE
Confidence 344556666666666666666544433 12344455555 899999999643
No 288
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=36.86 E-value=2.2e+02 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=32.7
Q ss_pred cCChhhHH-HHHHHHcCCCEEEEccCCCC-chhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 137 EGDPKDMI-CQSAEQMHIDLLVVGSRGLG-KIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 137 ~g~~~~~I-~~~a~~~~~dllVlG~~~~~-~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
.|-+..++ ..+.+++++|.||.=.+|.+ ++...+ ...+...+||+++.++.
T Consensus 181 ~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi------~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 181 RGPFSEELEKALLREYRIDAVVTKASGEQGGELEKV------KAAEALGINVIRIARPQ 233 (256)
T ss_pred eCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHH------HHHHHcCCcEEEEeCCC
Confidence 45433333 44578889999998766654 333222 35678899999996543
No 289
>PRK00766 hypothetical protein; Provisional
Probab=36.85 E-value=76 Score=24.21 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCceEEEEecC-ChhhHHHHHHHH----cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 128 MVKAESLVLEG-DPKDMICQSAEQ----MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 128 ~v~~~~~~~~g-~~~~~I~~~a~~----~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
|+-+....+.| |..+.|.++.+. .++.+|.+..-..+++.- --.+.|-..+..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv----vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV----VDIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE----ecHHHHHHHHCCCEEEE
Confidence 45566667778 899999999886 345577776554444432 12356778899999999
No 290
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=36.72 E-value=2e+02 Score=22.24 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEe-cCCh---------hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHh
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVL-EGDP---------KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCA 179 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~-~g~~---------~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll 179 (197)
.....+.+.++.+.|...++.+-.... .+.. .....+.+.+.++|.|=..+....+... ---....+++
T Consensus 107 ~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~-~~~~~~~~~~ 185 (236)
T PF01791_consen 107 EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATP-EDVELMRKAV 185 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccH-HHHHHHHHHH
Confidence 456667777888888888776544422 2211 3666777888999999988763222111 1123345678
Q ss_pred hcCCCc----EEEEC
Q 046290 180 HHAVCP----IIIVK 190 (197)
Q Consensus 180 ~~~~~p----Vliv~ 190 (197)
..+++| |++--
T Consensus 186 ~~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 186 EAAPVPGKVGVKASG 200 (236)
T ss_dssp HTHSSTTTSEEEEES
T ss_pred HhcCCCcceEEEEeC
Confidence 888899 88764
No 291
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.45 E-value=73 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=7.2
Q ss_pred HcCCCEEEEccCC
Q 046290 150 QMHIDLLVVGSRG 162 (197)
Q Consensus 150 ~~~~dllVlG~~~ 162 (197)
+.++.+|.+-+.+
T Consensus 116 ~~~~~vi~v~t~g 128 (406)
T cd01967 116 ELGIPVIPVNCEG 128 (406)
T ss_pred hhCCCEEEEeCCC
Confidence 3456666665544
No 292
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.22 E-value=76 Score=27.12 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=5.4
Q ss_pred CcEEEEEEe
Q 046290 69 GGILTIVHV 77 (197)
Q Consensus 69 ~~~l~lv~v 77 (197)
..-+.++|-
T Consensus 24 ~~~~~l~Hg 32 (430)
T cd01981 24 KNVHAVMHA 32 (430)
T ss_pred CCcEEEEeC
Confidence 555666665
No 293
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=36.22 E-value=1.9e+02 Score=22.00 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=25.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
..++|+.+.++-.|.-|.-...+- |.++..+|...++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr--------------G~~V~~l~f~~~~ 39 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR--------------GCEVIALHFDSPP 39 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB--------------T-EEEEEEEE-TT
T ss_pred CceEEEEecCCccHHHHHHHHHHC--------------CCEEEEEEEECCC
Confidence 458999999998887655544444 9999999997543
No 294
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.12 E-value=1.3e+02 Score=20.03 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=37.2
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
++.|+.++......+-...|.+..++..+|+||-...+... .-.|...++..-...+|++.
T Consensus 40 ~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 40 QEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhCCCEEe
Confidence 44677765433322334778999999999999987543221 11234445555666788764
No 295
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=36.00 E-value=59 Score=28.12 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+.|.+..++.+.++|++-+.-.+.+-+--+.++++++-.+.++||+.|+
T Consensus 109 L~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~ 159 (456)
T TIGR01283 109 LFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVD 159 (456)
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEE
Confidence 445555555555555555544433332222223333333333345555554
No 296
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.75 E-value=1.7e+02 Score=21.81 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=31.9
Q ss_pred CCceEEEEecC--C--hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 128 MVKAESLVLEG--D--PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 128 ~v~~~~~~~~g--~--~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
++++... +| + ..+.|++.+++.++|+|++|-... -+..++ .+.....+.+|++
T Consensus 74 ~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~P--kQE~~~----~~~~~~~~~~v~~ 130 (177)
T TIGR00696 74 KLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGCP--KQEIWM----RNHRHLKPDAVMI 130 (177)
T ss_pred CCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCCc--HhHHHH----HHhHHhCCCcEEE
Confidence 5655443 55 2 247789999999999999997532 233333 2333444555554
No 297
>PRK08392 hypothetical protein; Provisional
Probab=35.71 E-value=1.9e+02 Score=21.98 Aligned_cols=69 Identities=14% Similarity=-0.133 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
..++++.+.+.+.|+-++.-....-+...+++.+.+.++ .+++|+..+..- .+-.-..+..+++++..+
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~-~vg~~~~a~~~~~~~g~~ 205 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPE-DVGNVSWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChH-HCCcHHHHHHHHHHcCCC
Confidence 455667777788877555443445677789999998886 589998765421 110013456677776644
No 298
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=35.70 E-value=1.8e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=15.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHh
Q 046290 31 KMKVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l 54 (197)
.++|||.=.+.+ ++|+.|++.-
T Consensus 4 ~~kvLviG~g~r--ehal~~~~~~ 25 (426)
T PRK13789 4 KLKVLLIGSGGR--ESAIAFALRK 25 (426)
T ss_pred CcEEEEECCCHH--HHHHHHHHHh
Confidence 468888866655 6778888766
No 299
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.60 E-value=2.2e+02 Score=22.54 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=36.2
Q ss_pred HHHHHHHhHh--cCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 117 LSRALQMCKD--KMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 117 l~~~~~~~~~--~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+..+.+.+++ .|+.+......++.. ..+++.....++|.||+........ ....+. +....+||+++..
T Consensus 18 ~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-----~~~~~~-~~~~giPvV~~~~ 90 (303)
T cd01539 18 RKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA-----QTVINK-AKQKNIPVIFFNR 90 (303)
T ss_pred HHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH-----HHHHHH-HHHCCCCEEEeCC
Confidence 3334444454 455544333233443 3455556677999888864332111 122233 4567899998853
No 300
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=35.44 E-value=1.9e+02 Score=22.82 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=30.5
Q ss_pred EecCC---hhhHHHHHHHHcCCCE-EEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 135 VLEGD---PKDMICQSAEQMHIDL-LVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 135 ~~~g~---~~~~I~~~a~~~~~dl-lVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
+..|+ ..+.+.+.++ .+|+ ||||++..-..-. +... ..+....+|++|.+..
T Consensus 154 V~FGE~~~~~~~~~~~~~--~~DlllviGTSl~V~pa~----~l~~-~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 154 VWFGEMPLYMDEIESVMS--KTDLFVAVGTSGNVYPAA----GFVG-RAQFYGATTLELNLEE 209 (242)
T ss_pred EEcCCCCCcHHHHHHHHH--hCCEEEEEccCCccccHH----HHHH-HHHHcCCeEEEECCCC
Confidence 44565 3456666665 6887 7788765332221 2222 3455678999997654
No 301
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.26 E-value=78 Score=26.89 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=5.3
Q ss_pred CCCEEEEccCC
Q 046290 152 HIDLLVVGSRG 162 (197)
Q Consensus 152 ~~dllVlG~~~ 162 (197)
++.++.+.+.+
T Consensus 117 ~~~vi~v~t~g 127 (410)
T cd01968 117 GIPVIPVHSPG 127 (410)
T ss_pred CCCEEEEECCC
Confidence 44455554443
No 302
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.22 E-value=2.1e+02 Score=22.85 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHH---HHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQ---SAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~---~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
...-+.+.+...|+++..+..-||-.+.|.+ .+.+ ++|+||+. .|.+...+ --+.+.+.+-+..|+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~-r~D~vI~t-GGLGPT~D---DiT~e~vAka~g~~lv 91 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDNPDRIVEALREASE-RADVVITT-GGLGPTHD---DLTAEAVAKALGRPLV 91 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHh-CCCEEEEC-CCcCCCcc---HhHHHHHHHHhCCCcc
Confidence 3444666778889999988888875555544 3444 49999985 44333332 1233444444455544
No 303
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=35.09 E-value=2.8e+02 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=28.6
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
.+++++.+.+...|..|+-...+. |.++..+|+.
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~kr--------------G~~V~~v~f~ 213 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKR--------------GVEVIPVHIY 213 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHc--------------CCeEEEEEEE
Confidence 579999999999988876666665 8999999994
No 304
>PRK06988 putative formyltransferase; Provisional
Probab=35.06 E-value=2.1e+02 Score=23.36 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHhHhcCCceEEEEecCCh-hhHHHHHHHHcCCCEEEEccCC
Q 046290 119 RALQMCKDKMVKAESLVLEGDP-KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~-~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+.+.|+.+.. ..+. .+.+.+..++.++|++|+-..+
T Consensus 46 ~v~~~A~~~gip~~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 46 SVAAVAAEHGIPVIT---PADPNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHHHHcCCcEEc---cccCCCHHHHHHHHhcCCCEEEEehhc
Confidence 356667777887643 2222 3456777888899999987644
No 305
>PRK00861 putative lipid kinase; Reviewed
Probab=34.99 E-value=2.1e+02 Score=22.93 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=31.5
Q ss_pred CceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 129 VKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 129 v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
++++...... +-+..+.+.+...+.|+||+. .|-+.+. .+...++ ...+|+-++|..
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTl~-----evv~~l~-~~~~~lgviP~G 90 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIAS-GGDGTLS-----AVAGALI-GTDIPLGIIPRG 90 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEE-CChHHHH-----HHHHHHh-cCCCcEEEEcCC
Confidence 4444433332 445666666666678887764 3333333 3344444 346888888853
No 306
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.97 E-value=1.4e+02 Score=19.96 Aligned_cols=66 Identities=8% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHhHhcCCceEEEEecCC-hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEGD-PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+...+++.|.++. +...+ ..+.+.+.+++.++|+|.++..-...... ...+++.+-...+...+++
T Consensus 20 la~~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~--~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 20 LAAYLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVSMTPNLPE--AKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH--HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH--HHHHHHHHHhcCCCCEEEE
Confidence 3444455566554 44443 35899999999999999998743333322 2455555444445333333
No 307
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=34.85 E-value=1.7e+02 Score=20.95 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=24.7
Q ss_pred Hhc-CCceEEEEecCC--hhhHHHHHHHHcCCCEEEEcc
Q 046290 125 KDK-MVKAESLVLEGD--PKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 125 ~~~-~v~~~~~~~~g~--~~~~I~~~a~~~~~dllVlG~ 160 (197)
++. |++++.. ..+. -...|.+..++..+|+||--.
T Consensus 46 ~~~~Gi~v~~v-i~~~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 46 QEATGLDVTRL-LSGPLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred HhccCCeeEEE-EcCCCCCchhHHHHHHcCceeEEEEec
Confidence 345 8877655 3331 126799999999999998865
No 308
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=34.81 E-value=1.8e+02 Score=21.13 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
..+.|.+.+++.++|+|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 4678888888889999999987643
No 309
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.78 E-value=1.9e+02 Score=24.37 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=36.5
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC---chhhhhccchh-HHHhhcCCCcEEEECCC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG---KIKRAFLGSVS-DYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~---~~~~~~~gs~~-~~ll~~~~~pVliv~~~ 192 (197)
+.+.|+++.. +..+... ....+..+|.+++|+.+-. +.-+ -+|... .-+.++..+|++++-+.
T Consensus 223 L~~~GIpvtl-I~Dsa~~----~~m~~~~Vd~VivGAD~I~~NG~v~N-KiGTy~lA~~Ak~~~vPfyV~ap~ 289 (363)
T PRK05772 223 LMEEGIKVTL-ITDTAVG----LVMYKDMVNNVMVGADRILRDGHVFN-KIGTFKEAVIAHELGIPFYALAPT 289 (363)
T ss_pred HHHCCCCEEE-EehhHHH----HHHhhcCCCEEEECccEEecCCCEee-hhhhHHHHHHHHHhCCCEEEEccc
Confidence 4556887743 3333222 2233357999999997632 2222 245544 33457778999998553
No 310
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=34.61 E-value=2.2e+02 Score=22.09 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=45.0
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
++++-..+...|.-|+-.|.+. ..-..++++.+.....+..+...
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~--------------~~v~~L~t~~~~~~~s~~~H~~~--------------------- 46 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ--------------HEVVCLLTMVPEEEDSYMFHGVN--------------------- 46 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT---------------EEEEEEEEEESTTT-SSS-STT---------------------
T ss_pred cEEEEEcCcHHHHHHHHHHHHh--------------CCccEEEEeccCCCCcccccccC---------------------
Confidence 6778889999999888777665 23456666766554333333322
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
++-+...++..|++....-..| +..+.+....++.+++.+|-|.-.
T Consensus 47 ----~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~ 95 (218)
T PF01902_consen 47 ----IELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDID 95 (218)
T ss_dssp ----GTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS
T ss_pred ----HHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCC
Confidence 0001112223345544433343 455667777777788888888753
No 311
>PLN02476 O-methyltransferase
Probab=34.58 E-value=1.3e+02 Score=24.26 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHH---cCCCEEEEccCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQ---MHIDLLVVGSRG 162 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllVlG~~~ 162 (197)
+..+.+++.++..|+.-...+..|+..+.|.++..+ ..+|+|++....
T Consensus 154 e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 154 NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 344455566667788766778889998888776532 479999999864
No 312
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.45 E-value=2.2e+02 Score=21.99 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...+..+.+.+++.|.++......++.. ...++.....++|.||+......... ...+ .+.....||+++-.
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~-----~~i~-~~~~~~iPvV~~~~ 88 (282)
T cd06318 15 AALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLV-----PAVA-AAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchH-----HHHH-HHHHCCCCEEEecC
Confidence 3455556666667777665433334543 34555566779999999653321111 1122 23456789998854
No 313
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=34.42 E-value=1.9e+02 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.-+....++.+++- ++..|+++.++++.+.
T Consensus 13 ~G~t~~l~~~~~~g----------~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 13 NGNTAKLAEAVLEG----------AEEAGAEVEIIRLPEK 42 (207)
T ss_pred CCcHHHHHHHHHHH----------HHHcCCEEEEEEecCC
Confidence 45567777777777 6666999999999765
No 314
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=34.35 E-value=2.5e+02 Score=22.73 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.+.+.+.. .+.+-..+. ++..+ .+.+.+++.++|-+++..........--+-..-..+...++.||++...
T Consensus 63 ~~~~~~~~~~~~~-~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 63 SQVVRAAVETTAG-RVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred HHHHHHHHHHhCC-CCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3344445444432 344433343 24433 4456788899999999776433222222234445677788999999864
No 315
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.29 E-value=1.7e+02 Score=22.69 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+.++.+..++.|+++-..+-.+.+.+.+..+.. .+|+|.+=+-
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~--~~D~vlvMtV 137 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD--KVDLILLMSV 137 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--hCCeEEEEEe
Confidence 555667777788888777777788899988888 7776655443
No 316
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=34.27 E-value=90 Score=22.41 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCEEEEccCCCCc
Q 046290 144 ICQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 144 I~~~a~~~~~dllVlG~~~~~~ 165 (197)
..++++..+...|++...+.+.
T Consensus 121 ~~dl~~~~~~~vilV~~~~~~~ 142 (166)
T TIGR00347 121 TADLIKLLQLPVILVVRVKLGT 142 (166)
T ss_pred HHHHHHHhCCCEEEEECCCCcH
Confidence 4445555555555555444433
No 317
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=34.18 E-value=4e+02 Score=25.02 Aligned_cols=144 Identities=9% Similarity=0.058 Sum_probs=75.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccc---cccCCcCcccccChhhHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFV---LPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
.-+||.|+....+....+........ -+.....++++|.++-..... ..+...-. . ......
T Consensus 443 ~Lril~cl~~~~~is~~i~~le~~~~--------~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~------~-~~~~~s 507 (769)
T KOG1650|consen 443 ELRILTCLHGPENISGIINLLELSSG--------SLESPLSVYALHLVELVGRATPLLISHKLRKN------G-RVESRS 507 (769)
T ss_pred ceEEEEEecCCCcchHHHHHHHHcCC--------CCCCCcceeeeeeeecccccchhhhhhhhccc------c-cccccc
Confidence 56899999887776555554433311 111156788899888643221 11110000 0 000000
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEec---CChhhHHHHHHHHcCCCEEEEccCCCCchh------hhhccchhHHH
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLE---GDPKDMICQSAEQMHIDLLVVGSRGLGKIK------RAFLGSVSDYC 178 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~---g~~~~~I~~~a~~~~~dllVlG~~~~~~~~------~~~~gs~~~~l 178 (197)
...++....++.+.+.- ..++.+...... ..-.+.|+..+...+.+++++.-+..-... +..+.++-+.+
T Consensus 508 ~~~~~i~~aF~~f~~~~-~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~v 586 (769)
T KOG1650|consen 508 SSSDQINVAFEAFEKLS-QEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNV 586 (769)
T ss_pred ccchhhHHHHHHHHHhc-CCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHH
Confidence 00112233333333322 123333322211 245789999999999999999887542111 12345777899
Q ss_pred hhcCCCcEEEEC
Q 046290 179 AHHAVCPIIIVK 190 (197)
Q Consensus 179 l~~~~~pVliv~ 190 (197)
+.++||.|-+.=
T Consensus 587 l~~aPCSVgIlv 598 (769)
T KOG1650|consen 587 LKNAPCSVGILV 598 (769)
T ss_pred HhcCCCeEEEEE
Confidence 999999997763
No 318
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.15 E-value=81 Score=27.84 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.+...-|++.+..+ ..-+.++|.-..
T Consensus 10 g~~~~Ga~~~a~~i--------------~~~~~i~H~p~G 35 (513)
T CHL00076 10 GPAHIGTLRVASSF--------------KNVHAIMHAPLG 35 (513)
T ss_pred CchhhhHHHHHHhc--------------CCcEEEeeCCCC
Confidence 34445666666666 677888887443
No 319
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.11 E-value=1.4e+02 Score=24.75 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=36.3
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---CchhhhhccchhH-HHhhcCCCcEEEECC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSVSD-YCAHHAVCPIIIVKP 191 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~~~-~ll~~~~~pVliv~~ 191 (197)
.+.+.|+++.. +..+.. ..+....++|.+++|+.+- ++.-+. +|...- -+.++.++||+++-+
T Consensus 191 eL~~~GI~vtl-I~Dsa~----~~~M~~~~Vd~VivGAd~I~aNG~v~NK-iGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 191 ELAQEGIDHAI-IADNAA----GYFMRKKEIDLVIVGADRIASNGDFANK-IGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHCCCCEEE-EcccHH----HHHhhhcCCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcCCCEEEecc
Confidence 34556777643 323222 2233345799999999752 222222 344333 345777899999854
No 320
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.07 E-value=3.1e+02 Score=23.71 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh---hHHHHHHHHcCCCEEEEccCCCCchhhhhcc
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK---DMICQSAEQMHIDLLVVGSRGLGKIKRAFLG 172 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~---~~I~~~a~~~~~dllVlG~~~~~~~~~~~~g 172 (197)
.++++...+...++++-....+-+++ ..=++..++.++|+||+.++||+.-..-++.
T Consensus 144 AfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfe 203 (483)
T KOG0780|consen 144 AFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFE 203 (483)
T ss_pred hHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHH
Confidence 45666666666677775544444543 4444556778999999999998876654443
No 321
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.03 E-value=1.7e+02 Score=20.77 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=39.5
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEEC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVK 190 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~ 190 (197)
..+++.|.++.. +-...+.+.+++.|.+.++|+|.+++--.+... .+..+.+.+-..- ..+++++-
T Consensus 23 ~~l~~~GfeVi~-LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~--~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 23 HAFTNAGFNVVN-LGVLSPQEEFIKAAIETKADAILVSSLYGHGEI--DCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred HHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecccccCHH--HHHHHHHHHHHCCCCCCEEEec
Confidence 345666765522 222357899999999999999999875433332 2344555553332 23445553
No 322
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=34.00 E-value=1.5e+02 Score=20.98 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHH--cCCCEEEEcc
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQ--MHIDLLVVGS 160 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllVlG~ 160 (197)
...+++.|+++.....-+|-.+.|.+..++ .++|+||...
T Consensus 33 ~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttG 74 (144)
T TIGR00177 33 AALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTG 74 (144)
T ss_pred HHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECC
Confidence 344555677766555555444444443332 2799999863
No 323
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=33.75 E-value=91 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHhHhcCCceEEEEecCChhhHHHHHHHHc---CCCEEEEccCC
Q 046290 119 RALQMCKDKMVKAESLVLEGDPKDMICQSAEQM---HIDLLVVGSRG 162 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~---~~dllVlG~~~ 162 (197)
.+++.++..|+.-...+..|+..+.|.++..+. .+|+|.+-+..
T Consensus 85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 344444555665456677899999998888765 59999998754
No 324
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.75 E-value=3.1e+02 Score=23.59 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=25.2
Q ss_pred HHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhh
Q 046290 118 SRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKR 168 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~ 168 (197)
+++...+...++.+.......+..+.|.+ ..++|+|++-+.|++....
T Consensus 268 eqL~~~a~~~~vp~~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~ 315 (424)
T PRK05703 268 EQLKTYAKIMGIPVEVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDK 315 (424)
T ss_pred HHHHHHHHHhCCceEccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCH
Confidence 33444444455655332222233333332 2368999999888765543
No 325
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=33.53 E-value=2.4e+02 Score=23.36 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
..+.+.+.+++.++|+|| +|... .+.++..+.....+|++.||...
T Consensus 75 ~v~~~~~~~~~~~~d~IIaiGGGs--------v~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 75 EVEKVEEKAKDVNAGFLIGVGGGK--------VIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHHhhccCCCEEEEeCCch--------HHHHHHHHHHhcCCCEEEeCCCc
Confidence 356777778877899877 55211 12333333334568999999754
No 326
>PRK08227 autoinducer 2 aldolase; Validated
Probab=33.49 E-value=2.5e+02 Score=22.50 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCC-------hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGD-------PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~-------~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
+.-+.+.++.+.|.++|+.+-...-.|. ....-.+.+.+.++|+|=+-..+ ..-++++..+++
T Consensus 124 ~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~v 193 (264)
T PRK08227 124 QSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPV 193 (264)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCC
Confidence 3444577788899999987544223331 12334556788899998776542 222567778999
Q ss_pred cEEEECCCC
Q 046290 185 PIIIVKPPK 193 (197)
Q Consensus 185 pVliv~~~~ 193 (197)
||++--.+.
T Consensus 194 PVviaGG~k 202 (264)
T PRK08227 194 PIVIAGGKK 202 (264)
T ss_pred cEEEeCCCC
Confidence 999886543
No 327
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=33.08 E-value=3.7e+02 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=28.7
Q ss_pred cCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 127 KMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 127 ~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.|.+.-..+-.|...-.-+++|++.++|+||...|.
T Consensus 126 ~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 126 RGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 455665666678778888889999999999999774
No 328
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=32.95 E-value=96 Score=23.26 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=27.0
Q ss_pred hHHHHHHH----HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 142 DMICQSAE----QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 142 ~~I~~~a~----~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
+.+.+.++ ..++|.||+|..+...+. ...+.+....+.||+
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~-----~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLL-----GAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGH-----HHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHH-----HHHHhhcccCCCEEE
Confidence 35555555 789999999987654332 233556666677775
No 329
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.92 E-value=2.4e+02 Score=21.99 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...+..+.+.+++.|..+-.....++.. ..+++.....++|-||+-........ +.. +.+....+||+++-.
T Consensus 16 ~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~-----~~~-~~~~~~~iPvV~~d~ 89 (280)
T cd06315 16 LGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ-----AEL-ELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-----HHH-HHHHHCCCCEEEecC
Confidence 3455556666666675543322223433 35677777889999999542211111 111 234567899999954
No 330
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.56 E-value=1.7e+02 Score=21.58 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=27.4
Q ss_pred eEEEEecCChhhHHHHHH---HHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 131 AESLVLEGDPKDMICQSA---EQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 131 ~~~~~~~g~~~~~I~~~a---~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
++..+..++..+.+-..- ...++|+||-. |.+++.|-++.+.||+-++..
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~s 62 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVSIPVVEIPIS 62 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE---
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECCC
Confidence 455566776555544433 44788888753 556677777778999988754
No 331
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=32.40 E-value=1.7e+02 Score=24.88 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=13.3
Q ss_pred hHHHHHHHHcCCCEEEEccCCCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
+.+-+.++..+.-++|.|+....
T Consensus 178 ~~vk~V~~av~vPLIL~gsg~~~ 200 (389)
T TIGR00381 178 KVLEDVLQAVDVPIVIGGSGNPE 200 (389)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCc
Confidence 44444456566677777765444
No 332
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=31.99 E-value=1.6e+02 Score=22.81 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHhHhcCCceEEEEecCChhhHHHHHHHH---cCCCEEEEccC
Q 046290 118 SRALQMCKDKMVKAESLVLEGDPKDMICQSAEQ---MHIDLLVVGSR 161 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllVlG~~ 161 (197)
+.+++.++..|+.-...+..|+..+.+.+.... ..+|+|++...
T Consensus 107 ~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 107 EVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 344445555676655677889888877776543 47999999864
No 333
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.85 E-value=2.4e+02 Score=21.69 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.+.+.++..|..+.......+..+.+.+.....++|-||+-..... . ...+ -+...++||+++..
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--~-----~~~~-~~~~~~ipvV~~~~ 95 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ--D-----PLPE-RLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHHH-HHHhCCCCEEEECC
Confidence 3444455566667666554333343456666666778998877432211 1 1122 34567889998854
No 334
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=31.76 E-value=2.4e+02 Score=21.68 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhHhcCCceEEEEec--CChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 114 AALLSRALQMCKDKMVKAESLVLE--GDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~--g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
...++.+.+.+++.|.++...... ++.. ..+++.....++|-||+......... +..+ .+...++||+.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~ 88 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLV-----PAVE-RAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhH-----HHHH-HHHHCCCeEEEE
Confidence 344455556666677766554332 2332 34444555568999888643222111 2223 345678999988
Q ss_pred CC
Q 046290 190 KP 191 (197)
Q Consensus 190 ~~ 191 (197)
..
T Consensus 89 ~~ 90 (275)
T cd06320 89 ND 90 (275)
T ss_pred CC
Confidence 54
No 335
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=31.71 E-value=2.4e+02 Score=21.62 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=24.3
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
...+.+..+ ++|.|+++.-....+.+.+.++-..+.++.
T Consensus 74 ~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~ 112 (217)
T cd03145 74 DPEVVARLR--DADGIFFTGGDQLRITSALGGTPLLDALRK 112 (217)
T ss_pred CHHHHHHHH--hCCEEEEeCCcHHHHHHHHcCChHHHHHHH
Confidence 345666666 889999987665555555555555554443
No 336
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.45 E-value=2.2e+02 Score=22.69 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHH
Q 046290 42 AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRAL 121 (197)
Q Consensus 42 ~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (197)
..+...++.|+.+ |+..|....=+.-++... +...++.+++..+-++.+.
T Consensus 92 ~~aleiM~KaI~L----------A~dLGIRtIQLAGYDVYY--------------------E~~d~eT~~rFi~g~~~a~ 141 (287)
T COG3623 92 QQALEIMEKAIQL----------AQDLGIRTIQLAGYDVYY--------------------EEADEETRQRFIEGLKWAV 141 (287)
T ss_pred HHHHHHHHHHHHH----------HHHhCceeEeeccceeee--------------------ccCCHHHHHHHHHHHHHHH
Confidence 4456777888888 776676554443332211 1112455566666777778
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHH
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQS 147 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~ 147 (197)
..++.++|.....+-...+...|.++
T Consensus 142 ~lA~~aqV~lAvEiMDtpfm~sIsk~ 167 (287)
T COG3623 142 ELAARAQVMLAVEIMDTPFMNSISKW 167 (287)
T ss_pred HHHHhhccEEEeeecccHHHHHHHHH
Confidence 88888888777776666666666665
No 337
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=31.25 E-value=2.2e+02 Score=22.41 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=29.5
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCc------------------hhhhhccchhHHHhhcCCCcEEEECC
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGK------------------IKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~------------------~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.|. .......+.+.++|++|-|--.... .+.+.+...++.+-...+++|.....
T Consensus 174 ~Gs-G~~~~~~a~~~gaD~~ITGd~k~h~~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~~~~~i~v~~~~~ 245 (249)
T TIGR00486 174 SGS-GLSFIMKALREGVDAYITGDLSHHTAHLARELGLNVIDAGHYATERGGLRKLMEDLNENEGLEVVFSDI 245 (249)
T ss_pred cCc-hHHHHHHHHHcCCCEEEecCCchHHHHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 344 3345555556688888887644222 22233445566665555667666543
No 338
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.95 E-value=3.1e+02 Score=23.17 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC-----CchhhhhccchhHHHhhcCCCcEEE
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL-----GKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~-----~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
.+...+.++.+...+ ......++.+.+.+.++|+|++-.+-. ++...+ .. ..++++..++||++
T Consensus 125 i~~vr~a~VtvkiRl-~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p--~~-l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 125 IAEVRDSGVITAVRV-SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEP--LN-LKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHhcceEEEEec-CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCH--HH-HHHHHHHCCCCEEE
Confidence 334444454444444 123567888888888999999853211 110011 11 23456677899986
No 339
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.94 E-value=2.6e+02 Score=21.86 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+..+.+.+.+.|..+......++.. ..+++.+...++|-||+.......... ..+ .+....+||+.+-.
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~-----~l~-~l~~~~ipvV~~~~ 88 (288)
T cd01538 16 RDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALAS-----AVE-KAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHH-----HHH-HHHHCCCCEEEECC
Confidence 445555566666777665543333432 355555556799999986532221111 112 24456899999854
No 340
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.92 E-value=1.5e+02 Score=19.04 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=30.6
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKPP 192 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~~ 192 (197)
.+...+..++..+|++++...-... .. -...+++-... .+|++++-..
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~-~~---~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDG-DG---LELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSS-BH---HHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHhcccCceEEEEEeeeccc-cc---cccccccccccccccEEEecCC
Confidence 4555567788899999999754332 11 24445554444 5888888643
No 341
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=30.80 E-value=2.5e+02 Score=21.59 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.+++.|.++......++. ...+++.....++|-||+.......... ..+ -+.....||+.+..
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~i~-~~~~~~iPvV~~~~ 88 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDP-----VLK-EAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchH-----HHH-HHHHCCCCEEEEec
Confidence 455666667777778766553333333 2234555566689999986533211111 112 34566899999864
No 342
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=30.69 E-value=1.5e+02 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCCh
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDP 140 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~ 140 (197)
....++++.+.+.+.+++ ..+..||.
T Consensus 26 ~~~~~~~~~~~~~~~~~d--~i~~~GD~ 51 (223)
T cd00840 26 QFEAFEEIVELAIEEKVD--FVLIAGDL 51 (223)
T ss_pred HHHHHHHHHHHHHhcCCC--EEEECCcc
Confidence 444555555555554443 34555653
No 343
>PRK09875 putative hydrolase; Provisional
Probab=30.66 E-value=2.2e+02 Score=23.17 Aligned_cols=51 Identities=8% Similarity=-0.094 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCC--CEEEEccCCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHI--DLLVVGSRGL 163 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~--dllVlG~~~~ 163 (197)
.++.++.+.....+.|+.+.++.-.+.....+++..++.++ +.||+|....
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~ 189 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL 189 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC
Confidence 34445554555555677777776666666667888888887 8899987653
No 344
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.29 E-value=2.2e+02 Score=20.86 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
....|++.+++.++|+|++|-... -+..++ .+...+.+.+|++.
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~P--kQE~~~----~~~~~~l~~~v~~~ 130 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGAP--KQELWI----ARHKDRLPVPVAIG 130 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCC--HHHHHH----HHHHHHCCCCEEEE
Confidence 345589999999999999997542 233333 33444556666654
No 345
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=30.08 E-value=2.1e+02 Score=20.59 Aligned_cols=72 Identities=7% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHc--CCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQM--HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~--~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++..+.+.+.+.+.|++++ ....+-..+|+++..+. ++|-+|+-.-+.+..+- -....+....+|++=|
T Consensus 26 tl~~i~~~~~~~a~~~g~~v~--~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~-----Ai~DAl~~~~~P~vEV 98 (140)
T PF01220_consen 26 TLEDIEQKCKETAAELGVEVE--FFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSI-----AIRDALKAISIPVVEV 98 (140)
T ss_dssp HHHHHHHHHHHHHHHTTEEEE--EEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-H-----HHHHHHHCCTS-EEEE
T ss_pred CHHHHHHHHHHHHHHCCCeEE--EEecCCHHHHHHHHHHHHhhCCEEEEccchhccccH-----HHHHHHHcCCCCEEEE
Confidence 344555666666777666554 44444444444443332 58999997654433221 2234667778998877
Q ss_pred C
Q 046290 190 K 190 (197)
Q Consensus 190 ~ 190 (197)
+
T Consensus 99 H 99 (140)
T PF01220_consen 99 H 99 (140)
T ss_dssp E
T ss_pred E
Confidence 4
No 346
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.85 E-value=87 Score=27.32 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=6.5
Q ss_pred CCcEEEEEEe
Q 046290 68 GGGILTIVHV 77 (197)
Q Consensus 68 ~~~~l~lv~v 77 (197)
...-+.++|-
T Consensus 55 I~da~~lvHG 64 (475)
T PRK14478 55 ITDVAHLVHG 64 (475)
T ss_pred cCCEEEEEEC
Confidence 3567777774
No 347
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=1e+02 Score=25.50 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCCC-C-chhhhhccchhHHHhhcCCCcEEEECC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRGL-G-KIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~~-~-~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+....++..+ ++|+||+|-.+. + -+..+++..+.+. ++++..|++.+.+
T Consensus 178 ~a~~eaveAI~--~AD~IviGPgSl~TSIlP~Lllp~I~ea-Lr~~~ap~i~v~n 229 (323)
T COG0391 178 SAAPEAVEAIK--EADLIVIGPGSLFTSILPILLLPGIAEA-LRETVAPIVYVCN 229 (323)
T ss_pred CCCHHHHHHHH--hCCEEEEcCCccHhhhchhhchhHHHHH-HHhCCCCEEEecc
Confidence 34567788888 899999997642 2 2333455666664 4458888888755
No 348
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=29.69 E-value=1.4e+02 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 145 CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 145 ~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+.+++++|.||.=.+|..+....+ ...+.+.+||+++.++
T Consensus 183 ~aL~~~~~i~~lVtK~SG~~g~~eKi------~AA~~lgi~vivI~RP 224 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSGGAGTEAKL------EAARELGIPVVMIARP 224 (248)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHHHH------HHHHHcCCeEEEEeCC
Confidence 34577888999888666544333222 4567888999999654
No 349
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=29.68 E-value=69 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCc-EEEEEEeec
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGG-ILTIVHVQE 79 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~-~l~lv~v~~ 79 (197)
+.+|.|...++..|--.|..++++ |+..+. +|.++|+--
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~----------ar~~~~~~i~VlfiD~ 66 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEV----------ARENGRDKISVLFIDW 66 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHH----------HHHhCCCceEEEEEcc
Confidence 678999999999999999999999 777676 888888843
No 350
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=29.39 E-value=2.8e+02 Score=21.68 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=28.5
Q ss_pred hhHHHHHH---HHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 141 KDMICQSA---EQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 141 ~~~I~~~a---~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.+.+.+ ++.++|+|||-+-|.+.-.+ +.+-+.+.+||++-+
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r-------~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGYTQEMR-------DIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCHHHH-------HHHHHHhCCCEEeHH
Confidence 34444443 34579999999988774433 345566789998743
No 351
>PRK14057 epimerase; Provisional
Probab=29.22 E-value=2.5e+02 Score=22.41 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHHhHhcCC---------ceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 118 SRALQMCKDKMV---------KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 118 ~~~~~~~~~~~v---------~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
.+..+..++.|+ .+-..+.-+-+.+.|..+.. .+|+|.+=+-..+.-.+.|+.++.+++
T Consensus 113 ~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~--~vD~VLvMtV~PGfgGQ~Fi~~~l~KI 180 (254)
T PRK14057 113 HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS--DVEVIQLLAVNPGYGSKMRSSDLHERV 180 (254)
T ss_pred HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH--hCCEEEEEEECCCCCchhccHHHHHHH
Confidence 344455555564 45555556778899998988 788777766655544455655555554
No 352
>PLN02347 GMP synthetase
Probab=29.20 E-value=4.2e+02 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=30.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++++|++.+.-.|.-++..+.+. .+.+++.+++...
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~a-------------lG~~v~av~id~g 265 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKA-------------IGDRLHCVFVDNG 265 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHH-------------hCCcEEEEEEeCC
Confidence 568999999999998888877773 1678999998654
No 353
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=29.11 E-value=2.7e+02 Score=21.40 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=33.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF 81 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~ 81 (197)
+.-||+-+|+.+.+..++..++.- |.....-+-+|.+-...
T Consensus 105 P~~VlFiTDG~~~~~~~~~~~i~~----------as~~pifwqFVgiG~~~ 145 (200)
T PF10138_consen 105 PALVLFITDGGPDDRRAIEKLIRE----------ASDEPIFWQFVGIGDSN 145 (200)
T ss_pred CeEEEEEecCCccchHHHHHHHHh----------ccCCCeeEEEEEecCCc
Confidence 568999999999999999999999 87777777777775554
No 354
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=29.05 E-value=3.9e+02 Score=23.34 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=30.2
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
..++++.+.++..|-.|+-++... |.++..+|+...
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~kr--------------G~~v~~l~f~~g 212 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRR--------------GSRVHYCFFNLG 212 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHc--------------CCEEEEEEEecC
Confidence 569999999999998888777666 889999999644
No 355
>PRK06455 riboflavin synthase; Provisional
Probab=28.87 E-value=2.4e+02 Score=20.74 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=44.7
Q ss_pred HHHHHHHHhHh--cCCceEEEEecC--ChhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHH---hhcCCCcEE
Q 046290 116 LLSRALQMCKD--KMVKAESLVLEG--DPKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYC---AHHAVCPII 187 (197)
Q Consensus 116 ~l~~~~~~~~~--~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~l---l~~~~~pVl 187 (197)
.++-+.+.+.+ .+.++....+.| +..-.+.+++++.++|.+| +|+-+++.-.......++.-| --....||+
T Consensus 16 L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi 95 (155)
T PRK06455 16 MGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHII 95 (155)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEE
Confidence 34455555555 346666666678 5566667777777888665 677665544455545555544 334568877
Q ss_pred EE
Q 046290 188 IV 189 (197)
Q Consensus 188 iv 189 (197)
-|
T Consensus 96 ~v 97 (155)
T PRK06455 96 EV 97 (155)
T ss_pred EE
Confidence 65
No 356
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=28.55 E-value=3.8e+02 Score=22.94 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...+.+.+-+.+.|+.++..-++......|.+.+. +++-+|+|+..
T Consensus 262 ~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT 307 (388)
T COG0426 262 KMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEIL--DAKGLVVGSPT 307 (388)
T ss_pred HHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHh--hcceEEEecCc
Confidence 34444556667778888887777777788888888 89999999875
No 357
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.48 E-value=2.5e+02 Score=23.59 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=26.3
Q ss_pred HHHHHHHHhHhcCCceEEEE-ecCC----hhhHHHHHHHHcCCCEEE-Ecc
Q 046290 116 LLSRALQMCKDKMVKAESLV-LEGD----PKDMICQSAEQMHIDLLV-VGS 160 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~-~~g~----~~~~I~~~a~~~~~dllV-lG~ 160 (197)
..+++...++..|+.+...- ...+ ..+.+.+.+++.++|.|| +|.
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 46 VVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred chHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34455555566666553321 1122 245666788888999877 654
No 358
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.47 E-value=2.8e+02 Score=21.43 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=31.8
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...+.+.+++.++|.|++......+......-...+++...+++||+..-.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GG 201 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGG 201 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 345667777789997777554332221112235567777788999988754
No 359
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.46 E-value=2.9e+02 Score=21.56 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=13.3
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
.|+..+.++..-+ ++|.+|+-.+.+
T Consensus 102 vg~~~e~~~~~~~--~iDF~vVDc~~~ 126 (218)
T PF07279_consen 102 VGEAPEEVMPGLK--GIDFVVVDCKRE 126 (218)
T ss_pred ecCCHHHHHhhcc--CCCEEEEeCCch
Confidence 3554444443333 677777766543
No 360
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.28 E-value=4.3e+02 Score=23.55 Aligned_cols=112 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+++-=..|.|++=--|-+..+.|.+|++. +-.|.+..+ +. +..-..++
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqN-----------kfrVLIAAC--DT-------------------FRsGAvEQ 424 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQN-----------KFRVLIAAC--DT-------------------FRSGAVEQ 424 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhC-----------CceEEEEec--cc-------------------hhhhHHHH
Confidence 34666788889877777888888888532 334444333 21 11223345
Q ss_pred HHHHHHHHHHH---HHHHhH-hcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 109 QEENSAALLSR---ALQMCK-DKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 109 ~~~~~~~~l~~---~~~~~~-~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
++.+.+.+-+- ..+.+. .+|-+ ...+++.-+++|+.++.|+|.|.+-||-....-++++.+.-+
T Consensus 425 LrtHv~rl~~l~~~~v~lfekGYgkd------~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~ 492 (587)
T KOG0781|consen 425 LRTHVERLSALHGTMVELFEKGYGKD------AAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLI 492 (587)
T ss_pred HHHHHHHHHHhccchhHHHhhhcCCC------hHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHH
Confidence 55444433110 111111 11111 123678888999999999999999888766666777776533
No 361
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=28.14 E-value=2.5e+02 Score=21.94 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
..++.+.+++.|+++-..+-.+.+.+.+..+.. .+|+|.+=+-..+.-.+.|+.++.+++
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~fi~~~l~KI 156 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQPFIPEMLDKI 156 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchhccHHHHHHH
Confidence 445667777788888777777778888888888 778776666544433344444444433
No 362
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=28.11 E-value=1.7e+02 Score=22.75 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=32.1
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECCCCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKPPKE 194 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~~~~ 194 (197)
...+.+.+.+.+.|.|++|.+..-. .-...+.+.+-+..+ .||++.|...+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4567777887889999999764221 122334343333333 99999987643
No 363
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=28.08 E-value=1.2e+02 Score=24.09 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=31.8
Q ss_pred cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 137 EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 137 ~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++.+.+.+..+...+|-||+..+..+...+. .-.+.+-..++.||++=
T Consensus 162 ~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~---~el~~a~~~~~~pvlvG 211 (263)
T COG0434 162 NRSLEEAVKDTVERGLADAVIVTGSRTGSPPDL---EELKLAKEAVDTPVLVG 211 (263)
T ss_pred CcCHHHHHHHHHHccCCCEEEEecccCCCCCCH---HHHHHHHhccCCCEEEe
Confidence 347788888889999999999976543322211 11233455566888763
No 364
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=27.94 E-value=3.6e+02 Score=26.57 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEec--CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLE--GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~--g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+++..+.+++.++..+|+++...+. ....+.+++-.++..+|+| +|+|.
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTHr 706 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTHR 706 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEE-EechH
Confidence 3445566777778888888766554 3678889999999999965 57765
No 365
>PRK08299 isocitrate dehydrogenase; Validated
Probab=27.93 E-value=1.1e+02 Score=26.25 Aligned_cols=26 Identities=0% Similarity=-0.201 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 42 AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 42 ~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++...++|+++ |+..+.+|+++|=
T Consensus 185 ~~~eRIa~~AF~~----------A~~r~~kVt~v~K 210 (402)
T PRK08299 185 ESIRDFARASFNY----------GLDRKYPVYLSTK 210 (402)
T ss_pred HHHHHHHHHHHHH----------HHHcCCCEEEECC
Confidence 4788999999999 8777777777764
No 366
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=27.89 E-value=2.5e+02 Score=21.59 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
..++.+..++.|..+-..+.-|-..+.|..+++ ..|++.+-+-..+.-.+.|+-+.-.++
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGGQkFme~mm~KV 160 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGGQKFMEDMMPKV 160 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCchhhhHHHHHHHH
Confidence 556667778889999888888999999999999 888887777655544445555544433
No 367
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=27.85 E-value=3.4e+02 Score=22.25 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=37.4
Q ss_pred CCceEEEEecC-C----hhhHHHHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEECC
Q 046290 128 MVKAESLVLEG-D----PKDMICQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 128 ~v~~~~~~~~g-~----~~~~I~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
++.+...++.| + -...+.+.+++.++|.|.+..+.+.. ..+...-....++.+..++||+..-+
T Consensus 133 d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 45566666555 2 23467777788889999876543221 11101113455677778899887654
No 368
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=27.72 E-value=2e+02 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=19.3
Q ss_pred ceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 130 KAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 130 ~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
-++..+...+..+.|-++-. +.+.+|+|..
T Consensus 81 IVHP~l~~~~av~~i~k~L~--RlhavVIGPG 110 (306)
T KOG3974|consen 81 IVHPVLDQENAVDIIEKLLQ--RLHAVVIGPG 110 (306)
T ss_pred eecccccCCchHhHHHHHHh--heeEEEECCC
Confidence 34444445566777777666 7788888853
No 369
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=27.58 E-value=3.8e+02 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=15.3
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.....|++.+++.+.+.+.+|+.+
T Consensus 245 ~~~~~l~~~a~~~g~~~~wigs~~ 268 (403)
T cd06361 245 FHVFLLFNKAIERNINKVWIASDN 268 (403)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECc
Confidence 355566666666677777776554
No 370
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=27.44 E-value=2.1e+02 Score=23.47 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCC-Cch-hhhhccchhHHHhhcCCCcEEEECC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGL-GKI-KRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~-~~~-~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+....++..+ ++|+||+|-.+. +.+ ..+.+.-+.+.| ++.||+.|-|
T Consensus 175 a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 175 PAPGVLEAIE--EADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCHHHHHHHH--hCCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEEcC
Confidence 5678888888 899999997642 222 234455566666 6788885543
No 371
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=27.42 E-value=4.1e+02 Score=23.07 Aligned_cols=76 Identities=12% Similarity=0.005 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..-.....+.+.++..|.++.....+. ++...|.++.+....|-|++-..+..++...+ ..+....+|++-++.
T Consensus 50 lv~aAMR~Fad~LraeG~~V~Y~~~~~~~~~~~l~~~l~~~~~d~~~~~~p~~~~l~~~m-----~~L~~~~g~~i~~~~ 124 (505)
T COG3046 50 LVFAAMRHFADELRAEGLKVRYERADDNSFGGELRRALEAYPGDRVQVQEPGDHRLEARM-----KSLSMALGIEITEVE 124 (505)
T ss_pred HHHHHHHHHHHHHhhCCceeEEEEcCCcccchHHHHHHHhcCCCeEEEecCcchhHHHHH-----HhhhhhcCceeEEec
Confidence 344556667778888899998776665 68889999999999999999887766665443 334445677777776
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
..
T Consensus 125 ~~ 126 (505)
T COG3046 125 NP 126 (505)
T ss_pred Cc
Confidence 53
No 372
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.79 E-value=3.6e+02 Score=22.20 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCC----hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGD----PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
...+++.+.+++.|+.+......++ ..+.+.+.+++.++|.||- -.|.+.+. ++..+......|++.||
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa-vGGGS~iD------~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 36 LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG-IGGGKTLD------TAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE-ecCchhhH------HHHHHHHHcCCCEEEeC
Confidence 4566666667777777654445554 3566777788889997664 23322221 12222222368999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
...
T Consensus 109 TTa 111 (351)
T cd08170 109 TIA 111 (351)
T ss_pred Ccc
Confidence 753
No 373
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.70 E-value=2.9e+02 Score=21.37 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=28.0
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.++|++++.+|..+-++.+..-.+ -+ +.+++++..
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L----------~~--g~~V~VvmT 53 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCF----------SE--WAEVRAVVT 53 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHh----------cC--CCeEEEEEC
Confidence 4679999999999999988877666 32 567777755
No 374
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=26.60 E-value=3.9e+02 Score=22.48 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=41.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.....+.|+.+-+.+..-...+.+.++ +|.+-+|++.-.. ..-.+++..+++||.+=++
T Consensus 125 ~~R~ll~~~~e~GlpvatE~ld~~~~~y~~dl-----vs~~~IGARt~es-------q~hr~~asg~~~PVg~Kng 188 (349)
T PRK09261 125 IARKLLLDINELGLPAATEFLDPITPQYIADL-----ISWGAIGARTTES-------QVHRELASGLSCPVGFKNG 188 (349)
T ss_pred HHHHHHHHHHHhCCCeEEEecccccHHHHHhh-----cceeeeccchhcC-------HHHHHHhcCCCCeeEecCC
Confidence 33333333567799998988877655444443 6788899875332 2235577788999988554
No 375
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=26.44 E-value=2e+02 Score=21.28 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 128 MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 128 ~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+-++....--|-..+.|.++++. ++|.|.+|+-
T Consensus 125 ~~~v~ie~SGGI~~~ni~~ya~~-gvD~isvg~~ 157 (169)
T PF01729_consen 125 NPRVKIEASGGITLENIAEYAKT-GVDVISVGSL 157 (169)
T ss_dssp TTTSEEEEESSSSTTTHHHHHHT-T-SEEEECHH
T ss_pred CCcEEEEEECCCCHHHHHHHHhc-CCCEEEcChh
Confidence 33455544444567889999865 6999999973
No 376
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.28 E-value=3e+02 Score=20.99 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.++..|.++......++. ...+++.+...++|-+|+......... ...+. +...++||+.+..
T Consensus 15 ~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~-~~~~~ipvV~~~~ 88 (267)
T cd06322 15 IELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIR-----AAIAK-AKKAGIPVITVDI 88 (267)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhH-----HHHHH-HHHCCCCEEEEcc
Confidence 344555555566677766543333343 334455555678999999643221111 11233 4456799999864
No 377
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=26.08 E-value=1.4e+02 Score=22.28 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHcCCCEEEEccCCCCchhhhhcc---c-hhHHHh--hcCCCcEEEECCCCCCC
Q 046290 148 AEQMHIDLLVVGSRGLGKIKRAFLG---S-VSDYCA--HHAVCPIIIVKPPKEQH 196 (197)
Q Consensus 148 a~~~~~dllVlG~~~~~~~~~~~~g---s-~~~~ll--~~~~~pVliv~~~~~~~ 196 (197)
..-..+|++++.-...+.......| + ++..++ .+..+||+|+|.....+
T Consensus 84 lqlGkYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G 138 (187)
T COG1036 84 LQLGKYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKEG 138 (187)
T ss_pred eecccccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEecccccCC
Confidence 3445789999876554444433322 1 223333 34469999999876543
No 378
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.08 E-value=3.1e+02 Score=21.23 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHh--hcCCCcEEEECCC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCA--HHAVCPIIIVKPP 192 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll--~~~~~pVliv~~~ 192 (197)
+...+...|..+.. ...| +.....++.. +|+|++...-.. ..++ ...+++- .....||+++-..
T Consensus 16 l~~~L~~~g~~v~~-~~~~---~~a~~~~~~~-~dlviLD~~lP~-~dG~---~~~~~iR~~~~~~~PIi~Lta~ 81 (229)
T COG0745 16 LKEYLEEEGYEVDV-AADG---EEALEAAREQ-PDLVLLDLMLPD-LDGL---ELCRRLRAKKGSGPPIIVLTAR 81 (229)
T ss_pred HHHHHHHCCCEEEE-ECCH---HHHHHHHhcC-CCEEEEECCCCC-CCHH---HHHHHHHhhcCCCCcEEEEECC
Confidence 44445556655533 2223 5566666666 999999875432 2221 2223332 4466889998654
No 379
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.95 E-value=4e+02 Score=22.44 Aligned_cols=133 Identities=17% Similarity=0.072 Sum_probs=66.6
Q ss_pred ccEEEEEeCC-C-HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCccccc-ChhhHHHHHH
Q 046290 31 KMKVMVAIDE-S-AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYA-TSSMVESVRK 107 (197)
Q Consensus 31 ~~~Ilv~vd~-s-~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 107 (197)
-.+.+|.+.+ | ..-..+++||.++... +......|.++.=.....+....+ .. +.. .+......
T Consensus 51 d~rllvIvGPCSIhd~~~aleyA~rLk~l-------~~~~~d~l~ivmR~y~eKPRTs~g-wk---Gl~~DP~ldgs~-- 117 (356)
T PRK12822 51 DPRLLVIIGPCSIHDPQAALEYAKRLAVL-------QHQYLDQLYIVMRTYFEKPRTRKG-WK---GLIFDPDLDGSN-- 117 (356)
T ss_pred CCCeEEEEcCCcCCCHHHHHHHHHHHHHH-------HHhhcccEEEEEEeccccCCCCCC-cc---ccccCCCCCCCc--
Confidence 3567777765 3 3446888999888433 444555666654332221111111 00 000 00000000
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEE---EEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLL---VVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll---VlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
.-++.-+.+.++.....+.|+.+-+.+.+-...+.+ +|++ -+|++.-- ...-+.++..+++
T Consensus 118 -~i~~GL~i~R~ll~~~~~~GlPvatE~ld~~~~qy~--------~Dlisw~aIGARt~e-------sq~hrelaSgls~ 181 (356)
T PRK12822 118 -DIEKGLRLARQLLLSINTLGLATATEFLDTTSFPYI--------ADLICWGAIGARTTE-------SQVHRQLASALPC 181 (356)
T ss_pred -cHHHHHHHHHHHHHHHHHhCCCEEEeecccccHHHH--------HHHHHhhhhccchhc-------CHHHHHHHhCCCC
Confidence 002222334444444667789998888876544444 3444 56665321 1233556778899
Q ss_pred cEEEECCC
Q 046290 185 PIIIVKPP 192 (197)
Q Consensus 185 pVliv~~~ 192 (197)
||.+=++.
T Consensus 182 PVgfKngt 189 (356)
T PRK12822 182 PVGFKNGT 189 (356)
T ss_pred ceEecCCC
Confidence 99876543
No 380
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.88 E-value=3.5e+02 Score=22.01 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcC--CCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHA--VCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~--~~pVliv~~~~ 193 (197)
..+.+.+.+++.++|.|| +|...-. .++..+.... ..|++.||...
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~--------D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTL--------DTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHH--------HHHHHHHHHhcCCCCEEEEeCCC
Confidence 356777778888999988 6632211 1222221222 68999999754
No 381
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.87 E-value=2.8e+02 Score=20.66 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
....+...++..|+++...-..++. ....++.....++|.+|+........ . .-..+.+.++|++.+...
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~------~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAP------T-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcch------h-HHHHhhhcCCCEEEeccC
Confidence 3333444445567666544333333 33444444445899999875432211 1 134556778999988543
No 382
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.72 E-value=4.3e+02 Score=22.71 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCC----hhhHHHHHHHHcCCCEEEEccC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGD----PKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+..+++.+.++..+++. ..++-|| .+..|.+++++.+.++-|+|-.
T Consensus 90 ~~~~~~~~~l~~~~Id~-LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIP 139 (416)
T PRK14072 90 AEYERLLEVFKAHDIGY-FFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIP 139 (416)
T ss_pred HHHHHHHHHHHHcCCCE-EEEECChHHHHHHHHHHHHHHHhCCCceEEEee
Confidence 45566667777766655 3333442 3555666666567667777654
No 383
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=25.54 E-value=1.5e+02 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCEEEEccCCCCc
Q 046290 143 MICQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 143 ~I~~~a~~~~~dllVlG~~~~~~ 165 (197)
...++++..+..+|++...+.+.
T Consensus 124 ~~adl~~~l~~pvilV~~~~~~~ 146 (222)
T PRK00090 124 TLADLAKQLQLPVILVVGVKLGC 146 (222)
T ss_pred cHHHHHHHhCCCEEEEECCCCcH
Confidence 34556666666666666544433
No 384
>PLN02828 formyltetrahydrofolate deformylase
Probab=25.46 E-value=3.6e+02 Score=21.69 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=52.8
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
..+||.|-+.++..+..+|-++.+- ...++++.+|-...+...
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~-----------g~l~~eI~~ViSn~~~~~-------------------------- 111 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQD-----------GRLPVDITCVISNHERGP-------------------------- 111 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhc-----------CCCCceEEEEEeCCCCCC--------------------------
Confidence 4679999999999998888887665 233556555533222110
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEec--CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLE--GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~--g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
-..+.+.++..|+.+...-.. ....+.+.+..+ ++|++|+....
T Consensus 112 -------~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 112 -------NTHVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred -------CchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeeeh
Confidence 002444556778877533222 222346666666 69999998643
No 385
>PRK12361 hypothetical protein; Provisional
Probab=25.41 E-value=4e+02 Score=23.63 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+..+++.+.+... ++++...... +-+..+.+.+...++|+||+. .|.+.+. .+.+.+. +.++|+-++|-.
T Consensus 260 ~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~-GGDGTl~-----ev~~~l~-~~~~~lgiiP~G 330 (547)
T PRK12361 260 EYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIAC-GGDGTVT-----EVASELV-NTDITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEE-CCCcHHH-----HHHHHHh-cCCCCEEEecCC
Confidence 3444555555443 4443333322 345666666656677877664 3333333 3334443 346889898853
No 386
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=25.38 E-value=2.4e+02 Score=19.56 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHhHhcCCceEEEEecCChh----hHHHHHHHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPK----DMICQSAEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~----~~I~~~a~~~~~dllVlG 159 (197)
+.+.+++.|.++.....-.|-. +.|.++.+ ++|+||..
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dliitt 64 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALE--RADLVITT 64 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEEc
Confidence 4455666777665444434433 33434443 58988775
No 387
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=25.37 E-value=1.5e+02 Score=24.00 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhHhcCCce-EEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKA-ESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....++.+++.+.-+|++. ....+.+|+.+.+.+..+...+|+||+--..
T Consensus 155 S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 155 SKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPS 205 (286)
T ss_dssp -HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SS
T ss_pred CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCC
Confidence 4556666666667677653 3445678898888776667789999997653
No 388
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.23 E-value=3.1e+02 Score=20.89 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.+...+.+.|+.+......++.. ..+++.....++|-||+......... ...+ .+...++||+.+..
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-----~~l~-~~~~~~iPvV~~~~ 89 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYI-----PGLR-KAKQAGIPVVITNS 89 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccH-----HHHH-HHHHCCCcEEEeCC
Confidence 33444444455676665433333432 33444455668999988653221111 1122 34567899988854
No 389
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.18 E-value=2e+02 Score=21.86 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=27.6
Q ss_pred HHHHHHhHhc-CCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh
Q 046290 118 SRALQMCKDK-MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH 180 (197)
Q Consensus 118 ~~~~~~~~~~-~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~ 180 (197)
+.+.+.+... |+++....... ...+.+... ++|.|+++-.......+.+.++-...+++
T Consensus 49 ~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~--~ad~I~l~GG~~~~~~~~l~~~~l~~~l~ 108 (212)
T cd03146 49 ARFYAAFESLRGVEVSHLHLFD--TEDPLDALL--EADVIYVGGGNTFNLLAQWREHGLDAILK 108 (212)
T ss_pred HHHHHHHhhccCcEEEEEeccC--cccHHHHHh--cCCEEEECCchHHHHHHHHHHcCHHHHHH
Confidence 3344444545 65554332222 333344444 78888887632223333344444444444
No 390
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=25.15 E-value=3.3e+02 Score=21.18 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=28.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.+|+|++.+...|..++..+... +..+.++++...
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~--------------~~~i~vvfiDTG 75 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV--------------DPDIPVIFLDTG 75 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc--------------CCCCcEEEecCC
Confidence 35999999999999999888776 556888887444
No 391
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=25.09 E-value=97 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEE
Q 046290 7 PGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIV 75 (197)
Q Consensus 7 ~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv 75 (197)
+.+.+|||+-+=... ...++.+.+++.+.+=++.++++ .+.++.+..++
T Consensus 172 aaG~gCpVi~sl~~a----------D~ai~VTEPTp~glhD~kr~~el----------~~~f~ip~~iV 220 (284)
T COG1149 172 AAGTGCPVIASLKGA----------DLAILVTEPTPFGLHDLKRALEL----------VEHFGIPTGIV 220 (284)
T ss_pred CCCCCChHHHhhccC----------CEEEEEecCCccchhHHHHHHHH----------HHHhCCceEEE
Confidence 345778887554433 36888889999999999999999 77778776665
No 392
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.05 E-value=3.6e+02 Score=21.54 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=43.4
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhh---ccchhHHHhhcCCCcEEE
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAF---LGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~---~gs~~~~ll~~~~~pVli 188 (197)
...+.+.|++.|+..-..+......+.|...++.-.-=+.+|+..+-++.+..+ +....+.+-.+++.|+.+
T Consensus 133 ~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 133 SDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 456677778888877666666666777878777433224445555555543322 223344444566788875
No 393
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=25.02 E-value=2.4e+02 Score=22.00 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
...+.+.+.+.+.|.|++|.+..-...+ ...+...+- +...||++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v~~ik-~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLIEALR-RYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHHHHHh-ccCCCEEEeCCCc
Confidence 4456777777789999999765222222 233444444 4559999998654
No 394
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=24.95 E-value=1.3e+02 Score=21.01 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=30.0
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
..+|+|+.|..+.+....+.++.. ....|.++..+...+.
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~----------l~~~G~~V~~~g~~~t 79 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAG----------LRANGVDVIDIGLVPT 79 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHH----------HHHTTEEEEEEEEB-H
T ss_pred CCeEEEEEcccCCHHHHHHHHHHH----------HhhcccccccccccCc
Confidence 579999999999998888888777 3445888888875444
No 395
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=24.95 E-value=3.1e+02 Score=20.75 Aligned_cols=69 Identities=6% Similarity=-0.026 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..++.+.+.++..|..+.......+.. ..+++.....++|.||+........ .. -+.+...++|++++-
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~------~~-~~~~~~~~ipvV~~~ 86 (266)
T cd06282 16 ECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATS------PA-LDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCch------HH-HHHHhhCCCCEEEEe
Confidence 344555555666777665543333433 2444555556899999864322111 11 233556688887773
No 396
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=24.88 E-value=3.1e+02 Score=20.79 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHhHhcCCceEEEEec-----CChhhHHHHHHHHcCCCEEEEccC
Q 046290 120 ALQMCKDKMVKAESLVLE-----GDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~-----g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+...+++.|+.+...-.. ......+.+..+..++|++|+-..
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 355667778876431111 123567888888889999988543
No 397
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.88 E-value=3.2e+02 Score=20.86 Aligned_cols=68 Identities=7% Similarity=-0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..++.+.+.+++.|.++.......+. ...+.+.....++|-||+...... . ..+ .+...++||+.+-.
T Consensus 19 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~-----~~~-~l~~~~ipvV~~~~ 88 (268)
T cd06277 19 EIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST---E-----YIK-EIKELGIPFVLVDH 88 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh---H-----HHH-HHhhcCCCEEEEcc
Confidence 34444555566667666544333332 224455555678999998553211 1 123 24456789888854
No 398
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=24.79 E-value=1.8e+02 Score=17.86 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.0
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHh
Q 046290 31 KMKVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l 54 (197)
.++|+++.|.+.....+...+...
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~ 66 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALEL 66 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHH
Confidence 389999999998877666666665
No 399
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=24.79 E-value=1.5e+02 Score=21.05 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=25.1
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.+.+.++++++|.|++.-..... . -+... -..+++.+|.|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~-~--~i~~i-i~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE-E--QIKRI-IEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H-H--HHHHH-HHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH-H--HHHHH-HHHHHhCCCEEEEeC
Confidence 4889999999999999998654321 1 11222 234566789999887
No 400
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=24.79 E-value=98 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=39.8
Q ss_pred CChhhHHHHHHHHcCC---CEEEEccCCCCc----hhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 138 GDPKDMICQSAEQMHI---DLLVVGSRGLGK----IKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~---dllVlG~~~~~~----~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
|+....|..++...-+ =++++|.+|.-+ .+...+|.++..+|....+|..+++..
T Consensus 63 Gn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~ 124 (361)
T TIGR03297 63 GNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTD 124 (361)
T ss_pred hhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCC
Confidence 4667777777432233 347888887543 445678999999999999999999653
No 401
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.69 E-value=1.8e+02 Score=23.07 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=32.9
Q ss_pred CChhhHH-HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 138 GDPKDMI-CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 138 g~~~~~I-~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
|.+..++ ..+.++.++|.||.=.+|..+....+ ...+.+.+||+++.++.
T Consensus 179 GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi------~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 179 GPFSKELNRALFRQYGIDVLVTKESGGSGFDEKI------EAARELGIPVIVIKRPP 229 (249)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHH------HHHHHcCCeEEEEeCCC
Confidence 4343333 44578889999998766655443322 24678899999996554
No 402
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=24.67 E-value=4e+02 Score=21.95 Aligned_cols=67 Identities=24% Similarity=0.332 Sum_probs=35.9
Q ss_pred HHHHHHhHhcCCceEEEEe-cCC------hhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 118 SRALQMCKDKMVKAESLVL-EGD------PKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~-~g~------~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+++.+.+++.++++..... .++ ..+.+.+.+++ ++|.|| +|.. +. ..++..+.-....|++.|
T Consensus 40 ~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGG--s~------~D~aK~vA~~~~~p~i~I 110 (348)
T cd08175 40 KKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSG--TI------NDITKYVSYKTGIPYISV 110 (348)
T ss_pred HHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCc--HH------HHHHHHHHHhcCCCEEEe
Confidence 4555556666775544332 232 23445555555 889877 5521 11 122223333346899999
Q ss_pred CCCC
Q 046290 190 KPPK 193 (197)
Q Consensus 190 ~~~~ 193 (197)
|...
T Consensus 111 PTTa 114 (348)
T cd08175 111 PTAP 114 (348)
T ss_pred cCcc
Confidence 9753
No 403
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.56 E-value=3.6e+02 Score=22.03 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=33.4
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEEC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+.+.++..|+.+-. ..++.. ..+.+.+.++|.|++-.+..++ ......-....++....++||+.--
T Consensus 101 ~i~~lk~~g~~v~~--~v~s~~--~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaG 168 (307)
T TIGR03151 101 YIPRLKENGVKVIP--VVASVA--LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAG 168 (307)
T ss_pred HHHHHHHcCCEEEE--EcCCHH--HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEEC
Confidence 34444555654422 223332 3456667799999982221111 0010011334456666689988653
No 404
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.53 E-value=3.1e+02 Score=20.71 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+...+.+.+++.|..+.......+. ...+++.....++|-+|+....... ...+ .+ ....||+++..
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-------~~~~-~~-~~~ipvv~~~~ 85 (267)
T cd06284 16 EILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP-------TALT-AL-AKLPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH-------HHHH-HH-hcCCCEEEEec
Confidence 34445555556677766443333343 4456667777799988874322111 0112 22 33789988853
No 405
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.46 E-value=1.2e+02 Score=25.66 Aligned_cols=40 Identities=8% Similarity=-0.181 Sum_probs=23.9
Q ss_pred CCccccCCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHH
Q 046290 1 MEKETVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNA 47 (197)
Q Consensus 1 ~~~e~~~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~a 47 (197)
+|+|.--.++.|++.-.--...+ .+..+..+.++..+..-
T Consensus 1 ~~~~~~~~~~~C~~~ga~~~~~~-------I~d~~~lvhGp~gC~~~ 40 (396)
T cd01979 1 FECETGNYHTFCGLACVAWLYQK-------IEDSFFLVVGTKTCAHF 40 (396)
T ss_pred CccccCCcccccchhhHHHHhcc-------cCcceeEeecchhHHHH
Confidence 46777777788886543332222 44566666777666543
No 406
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=24.39 E-value=2.5e+02 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHHHhHhcCCceEEEEecCChhhHHHHHHHH----cCCCEEEEccCC
Q 046290 118 SRALQMCKDKMVKAESLVLEGDPKDMICQSAEQ----MHIDLLVVGSRG 162 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllVlG~~~ 162 (197)
+.+++.+...|+.-...++.|+..+.|.+.... ..+|+|.+-+..
T Consensus 118 ~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 118 ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCH
Confidence 345555566777666778889998888887653 479999998764
No 407
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.36 E-value=3.1e+02 Score=21.55 Aligned_cols=50 Identities=6% Similarity=0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEecCCh---hhHHHHHHHHcCCCEEEE
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLEGDP---KDMICQSAEQMHIDLLVV 158 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~---~~~I~~~a~~~~~dllVl 158 (197)
..+...+.+.++.+.+++.|+.+-.+...+.. .....++++..+.+-+-+
T Consensus 127 ~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~~~v~~ 179 (279)
T TIGR00542 127 TRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNSPWFTL 179 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCCCceEE
Confidence 34555667888888888889977666543332 344556666555444333
No 408
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=24.33 E-value=1.3e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 152 HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 152 ~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.--+.|+|+.|.+ +..+.+...++++.....+++|+-+.
T Consensus 23 ~~H~~I~G~TGsG--KS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 23 NRHIAIFGTTGSG--KSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred cceEEEECCCCCC--HHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3356788887765 34466777777776667788887543
No 409
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=24.26 E-value=2.5e+02 Score=20.17 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=9.6
Q ss_pred HHhhcCCCcEEEECCC
Q 046290 177 YCAHHAVCPIIIVKPP 192 (197)
Q Consensus 177 ~ll~~~~~pVliv~~~ 192 (197)
..+...++|+++|+..
T Consensus 46 ~~l~~~~~p~~~v~GN 61 (188)
T cd07392 46 NLLLAIGVPVLAVPGN 61 (188)
T ss_pred HHHHhcCCCEEEEcCC
Confidence 3445556777777654
No 410
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=24.25 E-value=2.2e+02 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=9.1
Q ss_pred hhHHHHHHHHcCCCEEEEc
Q 046290 141 KDMICQSAEQMHIDLLVVG 159 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG 159 (197)
.+.+.+.+++.++|+||+.
T Consensus 20 le~l~~~~~~~~~D~vv~~ 38 (224)
T cd07388 20 LEKLVGLAPETGADAIVLI 38 (224)
T ss_pred HHHHHHHHhhcCCCEEEEC
Confidence 3444444444455555543
No 411
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.16 E-value=3.4e+02 Score=20.97 Aligned_cols=70 Identities=16% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
....+.+.++..|..+......++.. ...++..-..++|-||+......... ...++ +....+||+++-.
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-----~~i~~-~~~~~iPvV~~~~ 88 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLT-----EAVQK-AIARGIPVIDMGT 88 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhH-----HHHHH-HHHCCCcEEEeCC
Confidence 44445555566777665544443433 33444555678999999543211111 12233 3445889999854
No 412
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.00 E-value=3.2e+02 Score=20.66 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.+.+.+++.|..+.......+.. ...++.....++|-||++........ ... ..+...++|++.+-.
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~-----~~l-~~l~~~~ipvv~~~~ 88 (268)
T cd06323 17 LKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVV-----PAV-KAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH-----HHH-HHHHHCCCcEEEEcc
Confidence 33344444555666654332223443 24455555668999888743211000 111 224556899998844
No 413
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=23.81 E-value=4.5e+02 Score=22.29 Aligned_cols=48 Identities=6% Similarity=-0.100 Sum_probs=33.0
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
....++|.+.+. .+|+|+|.+.=..... ..-+.+-...+|++..+|.-
T Consensus 204 ~~L~d~l~~~a~--~ad~V~~PAc~Gld~~-----~~~~aL~~~~~~~l~elPtl 251 (421)
T COG3075 204 PALADELIPVAN--TAEMVLMPACFGLDND-----ELWDALNDVLGLALFELPTL 251 (421)
T ss_pred HHHHHHHHHhcC--CcceEeeceeeCCCcH-----HHHHHHHHHhCCceeecCCC
Confidence 457888889988 9999999876221111 12245666778999988754
No 414
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.78 E-value=2.3e+02 Score=18.89 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC--CcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV--CPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~--~pVliv 189 (197)
+...+.+.|.++... ......+.+.+.+.+.++|+|.+........ ..-.....+.+..+ +++++-
T Consensus 19 ~~~~l~~~G~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~---~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 19 VAIALRDNGFEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALSTTHM---EAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHCCCEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecchHhHH---HHHHHHHHHHHhcCCCCeEEEe
Confidence 344456667665432 2335778888898989999999987543322 12234455666665 665554
No 415
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.65 E-value=3.2e+02 Score=20.43 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=36.6
Q ss_pred HHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...+...++..|+++.......+. .....+.....++|.||+.....+... -..+...++||+.+-.
T Consensus 18 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~--------~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 18 LRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL--------LEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--------HHHHHHcCCCEEEecc
Confidence 333444445556666544333343 234444455668998888754432211 2235667888888754
No 416
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.49 E-value=2.9e+02 Score=23.18 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=63.3
Q ss_pred ccEEEEEeCC-C-HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEE-EEeecCCccccc-----ccCCcCcccccChhhH
Q 046290 31 KMKVMVAIDE-S-AESFNALKWALDNLYGIVGFTPEAGGGGGILTI-VHVQEPFQRFVL-----PALSTSSAFYATSSMV 102 (197)
Q Consensus 31 ~~~Ilv~vd~-s-~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~l-v~v~~~~~~~~~-----~~~~~~~~~~~~~~~~ 102 (197)
-+++||.+.+ | .....+++||.++... +......+.+ +.++-..+.... ...+...+.+
T Consensus 50 d~rllvIvGPCSIhd~~~a~eyA~rL~~l-------~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf------ 116 (348)
T PRK12756 50 DPRLLVIIGPCSIHDTDAALDYATRLAAL-------REQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSY------ 116 (348)
T ss_pred CCceEEEecCCcCCCHHHHHHHHHHHHHH-------HHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCc------
Confidence 3577777766 3 4457888999887433 3344445554 444333221111 0111101011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEE---EEccCCCCchhhhhccchhHHHh
Q 046290 103 ESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLL---VVGSRGLGKIKRAFLGSVSDYCA 179 (197)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll---VlG~~~~~~~~~~~~gs~~~~ll 179 (197)
+. +..-....++.....+.|+.+-+.+..--.. ++ -+|+| -+|++.- . ...-+.+.
T Consensus 117 -----~i-~~GL~~~R~ll~~i~~~GlP~atE~ld~~~~----qY----~~DliSwgaIGARt~---e----sq~hre~A 175 (348)
T PRK12756 117 -----RV-NHGLELARKLLLQINELGLPTATEFLDMVTG----QY----IADLISWGAIGARTT---E----SQIHREMA 175 (348)
T ss_pred -----cH-HHHHHHHHHHHHHHHHcCCceeehhcccccH----HH----HHHHHhhhhhccccc---c----CHHHHHHH
Confidence 01 1111222223323356788887776655222 22 34677 5665532 1 12346677
Q ss_pred hcCCCcEEEECCC
Q 046290 180 HHAVCPIIIVKPP 192 (197)
Q Consensus 180 ~~~~~pVliv~~~ 192 (197)
..++|||.+=++.
T Consensus 176 Sgls~PVgfKN~t 188 (348)
T PRK12756 176 SALSCPVGFKNGT 188 (348)
T ss_pred hcCCCceEecCCC
Confidence 8889999876543
No 417
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=23.42 E-value=2.4e+02 Score=24.22 Aligned_cols=54 Identities=11% Similarity=-0.030 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
-.+.|.+.+++.++|-||.-....=.....-...+-+.+..+..+|+|.+-.+.
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~ 391 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDL 391 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999999999999876532221111122334556666899999995443
No 418
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=23.36 E-value=1.3e+02 Score=26.88 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC--CCchhh----hhccchhHHHhhcCCCcEEEEC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG--LGKIKR----AFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~--~~~~~~----~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..++|+..|++.++|+|++|..= .....+ .-++..-.+++..-||-+=++.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lS 96 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILS 96 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEec
Confidence 57999999999999999999731 111111 2245555666666667665553
No 419
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=23.28 E-value=2.3e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 143 MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 143 ~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
...+.++ ++-++.+|-.. ..+..+-....+.+++..+.+|++
T Consensus 90 ~FA~a~~--~aGlvfIGP~~-~aI~aMGdK~~AK~l~~~AgVp~V 131 (645)
T COG4770 90 DFAQAVE--DAGLVFIGPSA-GAIRAMGDKIAAKKLAAEAGVPTV 131 (645)
T ss_pred HHHHHHH--HCCcEEECCCH-HHHHHhccHHHHHHHHHHcCCCcc
Confidence 3444555 57888888554 334433334567778887777753
No 420
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.20 E-value=3.5e+02 Score=20.70 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+..+...+++.|.++......++..+ ..++.....++|.+|++........ ... ..+....+||+++-.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~-----~~l-~~~~~~~ipvV~~~~ 88 (277)
T cd06319 16 IMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAV-----TLL-KLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhH-----HHH-HHHHHCCCCEEEEec
Confidence 3444555556666766543322334432 2333344568999988653321111 111 235567899988853
No 421
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=23.13 E-value=3e+02 Score=19.98 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEe--cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVL--EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~--~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.++..+.+.+.+...|+++++.-- +|...+.|-+..+ ++|-||+-.-+.+..+- -....+...++|++=|+
T Consensus 28 l~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~--~~dgiiINpga~THtSi-----Al~DAl~~~~~P~VEVH 100 (146)
T PRK05395 28 LADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARD--GADGIIINPGAYTHTSV-----ALRDALAAVSIPVIEVH 100 (146)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccc--CCcEEEECchHHHHHHH-----HHHHHHHcCCCCEEEEe
Confidence 334445555666666765544322 2344444444433 68999997654443221 12345666788988774
No 422
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=23.06 E-value=3.3e+02 Score=23.65 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=26.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++|||++ +.++.....++.+.++ |.++.+++..+.
T Consensus 2 ~~kvLi~-~~geia~~ii~a~~~~--------------Gi~~v~v~~~~d 36 (472)
T PRK07178 2 IKKILIA-NRGEIAVRIVRACAEM--------------GIRSVAIYSEAD 36 (472)
T ss_pred CcEEEEE-CCcHHHHHHHHHHHHc--------------CCeEEEEeCCCc
Confidence 6789988 7777778878877777 777777776544
No 423
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.89 E-value=1.4e+02 Score=25.73 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=5.9
Q ss_pred cCCCEEEEccCC
Q 046290 151 MHIDLLVVGSRG 162 (197)
Q Consensus 151 ~~~dllVlG~~~ 162 (197)
....++.+-+.+
T Consensus 148 ~~~pvi~v~t~g 159 (443)
T TIGR01862 148 IGKDVVAVNCPG 159 (443)
T ss_pred cCCCEEEEecCC
Confidence 345555555443
No 424
>PRK10799 metal-binding protein; Provisional
Probab=22.88 E-value=3.8e+02 Score=21.02 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=33.1
Q ss_pred EecCChhhHHHHHHHHcCCCEEEEccCCCC------------------chhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 135 VLEGDPKDMICQSAEQMHIDLLVVGSRGLG------------------KIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 135 ~~~g~~~~~I~~~a~~~~~dllVlG~~~~~------------------~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
++.|+-. .+...+.+.++|++|-|--..+ ..+.+.+...++.+-...+.|+..++-+
T Consensus 170 i~~GsG~-~~i~~a~~~gaD~~ITGd~k~h~~~~A~~~gl~li~~GH~~sE~~~~~~la~~L~~~~~~~~~~i~~~ 244 (247)
T PRK10799 170 WCTGGGQ-SFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIP 244 (247)
T ss_pred EECCchH-HHHHHHHHcCCCEEEECCcchHHHHHHHHCCCeEEEcCchHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 3344433 3455556678888888864321 1222334556666666677888877644
No 425
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=22.85 E-value=1.8e+02 Score=18.71 Aligned_cols=45 Identities=4% Similarity=-0.076 Sum_probs=24.4
Q ss_pred HHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 119 RALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
.+.+.++..|+.+........-.+.-+..-+-..+|++|+.....
T Consensus 19 ~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 19 ALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 345556667777766554432222222222222789999987643
No 426
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=22.73 E-value=3.2e+02 Score=23.04 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=24.8
Q ss_pred hhhHHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
....++..++. .+++.||+=-+..+.-+.|+ ..++..++||+.++-.
T Consensus 59 ~i~~~~~~an~~~~c~gvi~wMhTfSpakmwI------~gl~~l~kPllhl~tQ 106 (359)
T PF02610_consen 59 EITRVCKEANADEDCDGVITWMHTFSPAKMWI------PGLQRLQKPLLHLHTQ 106 (359)
T ss_dssp HHHHHHHHHHH-TTEEEEEEEESS---THHHH------HHHHH--S-EEEEE--
T ss_pred HHHHHHHHhhccCCccEEeehhhhhccHHHHH------HHHHHhCCCeEEeecc
Confidence 34444444442 47888887666665554443 4677889999998643
No 427
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=22.65 E-value=4.6e+02 Score=21.89 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHhHhcCCceEEEEecC-------ChhhHHHHHHHHcCC----CEEE-EccCCCCchhhhhccchhHHHh--hcCC
Q 046290 118 SRALQMCKDKMVKAESLVLEG-------DPKDMICQSAEQMHI----DLLV-VGSRGLGKIKRAFLGSVSDYCA--HHAV 183 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g-------~~~~~I~~~a~~~~~----dllV-lG~~~~~~~~~~~~gs~~~~ll--~~~~ 183 (197)
+++.+.+...|+.+...+..+ +..+.+.+...+.++ |+|| +|...- +.++..+. ....
T Consensus 43 ~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v--------~D~ak~~A~~~~rg 114 (354)
T cd08199 43 KKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVL--------TDVAGLAASLYRRG 114 (354)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHH--------HHHHHHHHHHhcCC
Confidence 445555555677666544432 234555666666666 8888 553211 22222222 2347
Q ss_pred CcEEEECCC
Q 046290 184 CPIIIVKPP 192 (197)
Q Consensus 184 ~pVliv~~~ 192 (197)
+|++.||..
T Consensus 115 ~p~i~VPTT 123 (354)
T cd08199 115 TPYVRIPTT 123 (354)
T ss_pred CCEEEEcCc
Confidence 899999974
No 428
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.62 E-value=3.6e+02 Score=20.65 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+.+..++.++|.|++....+.+...-..-....++...++.||+..-.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECC
Confidence 45556667778998888764433221112235567778888999988754
No 429
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.56 E-value=1.5e+02 Score=25.16 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=16.1
Q ss_pred CChhhHHHHHHH-HcCCCEEEEccCCCC
Q 046290 138 GDPKDMICQSAE-QMHIDLLVVGSRGLG 164 (197)
Q Consensus 138 g~~~~~I~~~a~-~~~~dllVlG~~~~~ 164 (197)
||-.+.+++.++ +.+..+|.+-+.+..
T Consensus 100 GDDi~~v~~~~~~~~~~pVi~v~tpgf~ 127 (407)
T TIGR01279 100 KMDLEGLAERLSTNFGVPVLFAPASGLD 127 (407)
T ss_pred HhhHHHHHHHHHHhhCCCEEEeeCCCcc
Confidence 554555655544 456777777766543
No 430
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=22.55 E-value=1.6e+02 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=17.7
Q ss_pred CChhhHHHHH-HHHcCCCEEEEccCCCC
Q 046290 138 GDPKDMICQS-AEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 138 g~~~~~I~~~-a~~~~~dllVlG~~~~~ 164 (197)
|+=.+.+++. .++.++.+|.+-+.|..
T Consensus 113 GdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 113 KMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 5445566554 44778999988876643
No 431
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.52 E-value=3.2e+02 Score=20.02 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.7
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+..+.|++.+++.++|+|++|-.... +..++ .+..++.+.+|++.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~Pk--QE~~~----~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGAPK--QERWI----ARHRQRLPAGVIIG 132 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCCH--HHHHH----HHHHHHCCCCEEEE
Confidence 56899999999999999999975432 33332 34455666665554
No 432
>PRK06247 pyruvate kinase; Provisional
Probab=22.40 E-value=2.2e+02 Score=25.04 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~~ 192 (197)
.+......|+..++.+||+-+.. |+++..+.+.-| |||+.+-+.
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s---------G~ta~~isk~RP~~pI~a~t~~ 401 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS---------GDTALRAARERPPLPILALTPN 401 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 56667778888899989887643 566666666655 999998654
No 433
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=22.32 E-value=73 Score=20.25 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=21.1
Q ss_pred chhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 165 KIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 165 ~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
.++++--| ..+++.++++-||.+.+.+.+
T Consensus 23 a~KgwRsG-aVdK~vkna~ePvyi~R~~~P 51 (79)
T PF10808_consen 23 AWKGWRSG-AVDKIVKNAQEPVYIYRAKNP 51 (79)
T ss_pred HHHHHhhc-chHHHhcCCCCcEEEEecCCc
Confidence 34444333 458899999999999987654
No 434
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=22.22 E-value=1.7e+02 Score=23.22 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 128 MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 128 ~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
|+++.-+...||+.+....|.++..-.|+.+--.. +.-.+-.+-++.+++..++-+|+-+=
T Consensus 20 Gv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~vfiPltVG 80 (256)
T COG0107 20 GVNFKNLRDAGDPVELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQVFIPLTVG 80 (256)
T ss_pred cccccchhhcCChHHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhceeeeEec
Confidence 56666655668999988888877555555554433 22223445677788888888888763
No 435
>PF13362 Toprim_3: Toprim domain
Probab=22.21 E-value=2.1e+02 Score=18.38 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=19.5
Q ss_pred CccEEEEEeCCCHH--HHHHHHHHHHh
Q 046290 30 KKMKVMVAIDESAE--SFNALKWALDN 54 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~--s~~al~~a~~l 54 (197)
..++|+++.|.+.. ...+...+...
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~ 66 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAER 66 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHH
Confidence 47899999999877 66666666666
No 436
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.12 E-value=4.4e+02 Score=21.53 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=35.7
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccch-hHHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSV-SDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~-~~~ll~~~~~pVliv~~ 191 (197)
+.+.|+++.. +..+. +....+..++|.+++|+..- +++-+. .|+. ..-+.++.++||+++-+
T Consensus 174 L~~~gI~vtl-I~Dsa----~~~~m~~~~vd~VlvGAd~v~~nG~v~nk-~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 174 LMQDGIDVTL-ITDSM----AAYFMQKGEIDAVIVGADRIARNGDVANK-IGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHCCCCEEE-EChhH----HHHHccccCCCEEEEcccEEecCCCEeEh-hhHHHHHHHHHHhCCCEEEecc
Confidence 4456887744 32222 22223345899999999752 223332 3443 33445777899999854
No 437
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=22.10 E-value=4.4e+02 Score=21.48 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=52.9
Q ss_pred EEEEEEeecCCc----ccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHH
Q 046290 71 ILTIVHVQEPFQ----RFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQ 146 (197)
Q Consensus 71 ~l~lv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~ 146 (197)
.+.++||-.... ...+.......+.+..+.....+-+.....-+..|+++. ..++....-....-.|.. |.+
T Consensus 51 ~wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~~a~~~L~~~~~~N~~~L~~i~-~s~~~~~~~~~~~~~g~t---L~d 126 (309)
T PF10236_consen 51 GWIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPMYAAKWLKKFLKANEELLKKIK-LSKDYKWSKRESTPKGST---LLD 126 (309)
T ss_pred CEEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHHHHHHHHHHHHHHhHHHHHhcc-ccccccccccccCCCCCC---HHH
Confidence 889999965531 111111111334555566666665555555555555533 112111111111223333 444
Q ss_pred HHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEECC
Q 046290 147 SAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVKP 191 (197)
Q Consensus 147 ~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~~ 191 (197)
.++ +|...... ..-.++.+-+++..+.. +|||+.=+
T Consensus 127 Lv~--------~g~~~~~~-a~~~~~~l~~EL~~~~~~~PVL~avD 163 (309)
T PF10236_consen 127 LVE--------QGINDPKY-AWDVFQALIRELKAQSKRPPVLVAVD 163 (309)
T ss_pred HHH--------hhcccchh-HHHHHHHHHHHHHhcccCCceEEEeh
Confidence 433 23332221 12245777888999998 99998744
No 438
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=22.01 E-value=1.6e+02 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=23.1
Q ss_pred hcCCceEEEEecCChhhHHHHHHHHcCCCEEEE
Q 046290 126 DKMVKAESLVLEGDPKDMICQSAEQMHIDLLVV 158 (197)
Q Consensus 126 ~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVl 158 (197)
+.+..-+..+..|+..+.|..+++-.+++++.|
T Consensus 109 ~~g~~hH~~~~~G~~~~~l~~~~~~lgi~v~~~ 141 (142)
T PF02952_consen 109 ENGIAHHVALVYGDYAEELKELAKYLGIEVVEM 141 (142)
T ss_dssp HT-SSSEEEEEES--HHHHHHHHHHHT--EE-E
T ss_pred hCCCCCeEEEEcCcHHHHHHHHHHHcCCEEEEc
Confidence 456677788899999999999999999998865
No 439
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.99 E-value=4.3e+02 Score=21.30 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=9.0
Q ss_pred hhHHHHHHHHcCCCEEEEcc
Q 046290 141 KDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~ 160 (197)
.+.+...++++++|.|.+-+
T Consensus 136 ~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 136 SDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHHcCCcEEEEeC
Confidence 33444444444444444443
No 440
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.87 E-value=1.6e+02 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=15.4
Q ss_pred CChhhHHHHH-HHHcCCCEEEEccCCCC
Q 046290 138 GDPKDMICQS-AEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 138 g~~~~~I~~~-a~~~~~dllVlG~~~~~ 164 (197)
|+=.+.+++. .++.++.+|.+.+.+..
T Consensus 115 GdDi~~v~~~~~~~~~~pvi~v~t~gf~ 142 (421)
T cd01976 115 GDDIEAVARKASKELGIPVVPVRCEGFR 142 (421)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 4434444444 33557778888766643
No 441
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.83 E-value=6.6e+02 Score=23.44 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHH------------------HHHHHHcCCCEEEEccCCCCc
Q 046290 104 SVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMI------------------CQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I------------------~~~a~~~~~dllVlG~~~~~~ 165 (197)
+..++..++.++.+..+.+.|++.++.+..-+-+|+..+.| ++.+++.+++=+|+..+....
T Consensus 199 eeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~ 278 (733)
T PLN02925 199 DDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNP 278 (733)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCh
Confidence 33444556677788889999999988777666565543322 345788899999998876553
Q ss_pred hhhhh-ccchhHHHhhc-CCCcEEEEC
Q 046290 166 IKRAF-LGSVSDYCAHH-AVCPIIIVK 190 (197)
Q Consensus 166 ~~~~~-~gs~~~~ll~~-~~~pVliv~ 190 (197)
..... ..-.+.++... .+.|+++=-
T Consensus 279 ~~~V~AyR~La~~L~~~g~~yPLhLgv 305 (733)
T PLN02925 279 VVMVQAYRLLVAEMYVLGWDYPLHLGV 305 (733)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 32211 12222332222 678887743
No 442
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.83 E-value=3.9e+02 Score=20.82 Aligned_cols=78 Identities=12% Similarity=-0.036 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 046290 45 FNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMC 124 (197)
Q Consensus 45 ~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (197)
...++.++++ |+..|++..+++....... . ..+...+...+.++.+...+
T Consensus 89 ~~~~~~~i~~----------a~~lGa~~i~~~~~~~~~~----------------~----~~~~~~~~~~~~l~~l~~~a 138 (275)
T PRK09856 89 LDMIKLAMDM----------AKEMNAGYTLISAAHAGYL----------------T----PPNVIWGRLAENLSELCEYA 138 (275)
T ss_pred HHHHHHHHHH----------HHHhCCCEEEEcCCCCCCC----------------C----CHHHHHHHHHHHHHHHHHHH
Confidence 3455566667 7777999887764322100 0 01233345667888888888
Q ss_pred HhcCCceEEEEec------CChhhHHHHHHHHcC
Q 046290 125 KDKMVKAESLVLE------GDPKDMICQSAEQMH 152 (197)
Q Consensus 125 ~~~~v~~~~~~~~------g~~~~~I~~~a~~~~ 152 (197)
++.|+.+-.+... .+....+.++.+..+
T Consensus 139 ~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~ 172 (275)
T PRK09856 139 ENIGMDLILEPLTPYESNVVCNANDVLHALALVP 172 (275)
T ss_pred HHcCCEEEEecCCCCcccccCCHHHHHHHHHHcC
Confidence 8899877655431 123567777777655
No 443
>PRK06849 hypothetical protein; Provisional
Probab=21.73 E-value=4e+02 Score=22.23 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=18.9
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|||--...+.+.. .|-.+ .+. |.+++++..
T Consensus 3 ~~~~VLI~G~~~~~~l~---iar~l----------~~~-G~~Vi~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAPAALE---LARLF----------HNA-GHTVILADS 36 (389)
T ss_pred CCCEEEEeCCCcHHHHH---HHHHH----------HHC-CCEEEEEeC
Confidence 36788887655554433 44444 222 677776644
No 444
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=21.70 E-value=3.5e+02 Score=20.23 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=11.5
Q ss_pred HcCCCEEEEccCCCC
Q 046290 150 QMHIDLLVVGSRGLG 164 (197)
Q Consensus 150 ~~~~dllVlG~~~~~ 164 (197)
-.++|.||+|+.-..
T Consensus 67 l~~aD~ii~gsPty~ 81 (200)
T PRK03767 67 LADYDAIIFGTPTRF 81 (200)
T ss_pred HHhCCEEEEEecccC
Confidence 348999999997643
No 445
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.62 E-value=2.5e+02 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChh
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPK 141 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~ 141 (197)
....++.+...+.+.+ +...++.||..
T Consensus 24 ~~~~l~~l~~~i~~~~--~D~viIaGDif 50 (407)
T PRK10966 24 HQAFLDWLLEQVQEHQ--VDAIIVAGDIF 50 (407)
T ss_pred HHHHHHHHHHHHHhcC--CCEEEECCccc
Confidence 3445556666665544 44566667643
No 446
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.60 E-value=4.1e+02 Score=21.52 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRA 120 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (197)
+-++...+..++.- .+..|+++.---.+.+..+.+...+.. .+-+..+
T Consensus 54 svEs~E~i~~~A~~----------vk~~Ga~~lRGgafKPRTSPYsFQGlg----------------------e~gL~~l 101 (286)
T COG2876 54 SVESEEQVRETAES----------VKAAGAKALRGGAFKPRTSPYSFQGLG----------------------EEGLKLL 101 (286)
T ss_pred ccCCHHHHHHHHHH----------HHHcchhhccCCcCCCCCCcccccccC----------------------HHHHHHH
Confidence 55555555555555 444466666555655544333322221 2455556
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
.+...+.|..+.+.+..-.-.+.+.++ +|+|=+|++.-
T Consensus 102 ~~a~~~~Gl~vvtEvm~~~~~e~~~~y-----~DilqvGARNM 139 (286)
T COG2876 102 KRAADETGLPVVTEVMDVRDVEAAAEY-----ADILQVGARNM 139 (286)
T ss_pred HHHHHHcCCeeEEEecCHHHHHHHHhh-----hhHHHhcccch
Confidence 666777899888888765444444443 57777777653
No 447
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=21.55 E-value=3.7e+02 Score=20.41 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+..+.+.+++.|..+......++. ...+++.....++|-||+...... .. -+...++||+.+...
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~----------~~-~~~~~gipvv~~~~~ 84 (265)
T cd06291 16 ELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLG----------IE-EYENIDLPIVSFDRY 84 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCCcC----------HH-HHhcCCCCEEEEeCC
Confidence 34444556666677666443333333 335556677778999988654211 11 234567899988643
No 448
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.45 E-value=1.4e+02 Score=26.33 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=5.2
Q ss_pred CcEEEEEEe
Q 046290 69 GGILTIVHV 77 (197)
Q Consensus 69 ~~~l~lv~v 77 (197)
..-+.++|-
T Consensus 24 ~~~~~i~Hg 32 (511)
T TIGR01278 24 KNVHAVMHA 32 (511)
T ss_pred CCcEEEeeC
Confidence 555566665
No 449
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.42 E-value=1.8e+02 Score=22.22 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHH
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYC 178 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~l 178 (197)
..++.+..++.|+++-..+..+.+.+.+..+.. ..|+|.+=+-..+.-.+.|...+.+++
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~PG~~Gq~f~~~~~~KI 153 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVDMVLVMSVEPGFGGQKFIPEVLEKI 153 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-TTTSSB--HGGHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcCEEEEEEecCCCCcccccHHHHHHH
Confidence 334556666778888777777778888888888 889866655544433344555555544
No 450
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=21.31 E-value=1.6e+02 Score=18.43 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC-CchhhhhccchhHHHhhcC
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL-GKIKRAFLGSVSDYCAHHA 182 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~-~~~~~~~~gs~~~~ll~~~ 182 (197)
.+.+-.+..++++.+.+...|+.+. ...++.+.|.+.+-... .|+++- ..+.+.+...+++.++...
T Consensus 5 ~l~~I~~~~l~~l~~~l~~~~i~l~---~~~~~~~~l~~~~~~~~-----~GAR~l~r~i~~~i~~~la~~il~~~ 72 (81)
T PF10431_consen 5 DLEKIADLQLKKLNERLKEKGIELE---FDDAVVDYLAEKGYDPE-----YGARPLRRIIEREIEPPLADAILSGK 72 (81)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTEEEE---E-HHHHHHHHHHHHHTT-----TTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEE---ecHHHHHHHHHhCcccC-----CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455566677777777775543 35577888888775432 355442 2344445556666666544
No 451
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=21.17 E-value=2.3e+02 Score=22.91 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHhHhcCCceEEEEecCC----hhhHHHHHHHHcCCCEEEEccC
Q 046290 120 ALQMCKDKMVKAESLVLEGD----PKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllVlG~~ 161 (197)
++......|+.+...-...+ ....+.+..++.++|+||+...
T Consensus 130 l~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 130 LRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred HHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 44445556777765544432 4678899999999999999753
No 452
>PRK00211 sulfur relay protein TusC; Validated
Probab=21.15 E-value=1.2e+02 Score=20.93 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=23.8
Q ss_pred cEEEEEeCCCHH----HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAE----SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~----s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++|++.+..+|+ +..+++.|+.. +.. +.++.++..-+.
T Consensus 2 ~ki~~i~~~~Pyg~~~~~eaLd~ala~----------~a~-~~~v~vff~~Dg 43 (119)
T PRK00211 2 KRIAFVFRQAPHGTASGREGLDALLAT----------SAF-TEDIGVFFIDDG 43 (119)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHH----------hcc-cCCeeEEEEhhh
Confidence 568888886554 55666666665 322 347888877443
No 453
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.11 E-value=1.4e+02 Score=26.55 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=55.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+.|.|.-- -.|-+.|.|++-+++.. +++.-..|..+-+++..
T Consensus 183 ~rDIcV~Ap--TGSGKTLaY~iPIVQ~L------~~R~v~~LRavVivPtr----------------------------- 225 (620)
T KOG0350|consen 183 PRDICVNAP--TGSGKTLAYVIPIVQLL------SSRPVKRLRAVVIVPTR----------------------------- 225 (620)
T ss_pred CCceEEecC--CCCCceeeehhHHHHHH------ccCCccceEEEEEeeHH-----------------------------
Confidence 455655443 34455566666665544 55545558888776653
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcC---CCEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMH---IDLLVV 158 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~---~dllVl 158 (197)
+-+.+..+.+.+++...|+.+.......+..++..+.+.... +|+||-
T Consensus 226 ~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVa 276 (620)
T KOG0350|consen 226 ELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVA 276 (620)
T ss_pred HHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEc
Confidence 233445555666777777765554445578888888887555 577665
No 454
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.94 E-value=5.1e+02 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEcc
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~ 160 (197)
.+.+.+.++.+...+ .......+.+.+.+.++|+|++..
T Consensus 124 v~~~~~~~V~v~vr~-~~~~~~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 124 IAEIRDAGVIVAVSL-SPQRAQELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred HHHHHhCeEEEEEec-CCcCHHHHHHHHHHCCCCEEEEec
Confidence 333444455543333 223467888888888999999954
No 455
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.88 E-value=4.3e+02 Score=20.93 Aligned_cols=70 Identities=9% Similarity=-0.034 Sum_probs=38.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+.+.+.+++.|..+......++.. ..+++.....++|-||+........ .+..+. +....+||+++-.
T Consensus 16 ~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~-----~~~l~~-~~~~~iPvV~~d~ 87 (302)
T TIGR02634 16 DRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVL-----SNAVQE-AKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHH-----HHHHHH-HHHCCCeEEEecC
Confidence 33445555666676654432233433 3456666667899998865332211 122233 3456789998854
No 456
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.32 E-value=2e+02 Score=24.43 Aligned_cols=26 Identities=19% Similarity=0.518 Sum_probs=13.4
Q ss_pred CChhhHHHHHHH-HcC-CCEEEEccCCC
Q 046290 138 GDPKDMICQSAE-QMH-IDLLVVGSRGL 163 (197)
Q Consensus 138 g~~~~~I~~~a~-~~~-~dllVlG~~~~ 163 (197)
|+=.+.+++.++ +.. +.+|.+.+.+.
T Consensus 104 GdDi~~v~~~~~~~~~~~~vi~v~tpgf 131 (415)
T cd01977 104 GDDIKAVAKEVMEELPDVDIFVCNAPGF 131 (415)
T ss_pred cCCHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 544455555443 333 56666655543
No 457
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=20.31 E-value=1.8e+02 Score=22.07 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-CC----ceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 107 KSQEENSAALLSRALQMCKDK-MV----KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~-~v----~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
+.+++-+++.+..+.+-.... +- -+.......+..+.+.+..++.+-.-+++++..+.......+..+. +.+..
T Consensus 52 ~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr-~~l~~ 130 (185)
T PF09936_consen 52 EAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELR-RMLEE 130 (185)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHH-HHHHH
T ss_pred HHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHH-HHHhc
Confidence 344555666666655444322 10 1222233467788888888888888888888766433333334443 44567
Q ss_pred CCCcEEEE
Q 046290 182 AVCPIIIV 189 (197)
Q Consensus 182 ~~~pVliv 189 (197)
...|+|++
T Consensus 131 ~~~P~Lll 138 (185)
T PF09936_consen 131 EDRPVLLL 138 (185)
T ss_dssp --S-EEEE
T ss_pred cCCeEEEE
Confidence 78888887
No 458
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.28 E-value=4.7e+02 Score=21.13 Aligned_cols=35 Identities=6% Similarity=0.051 Sum_probs=20.9
Q ss_pred cEEEEEeCCCHHH----------HHHHHHHHHhcccccCCCCCCCCCCcEEEEEE
Q 046290 32 MKVMVAIDESAES----------FNALKWALDNLYGIVGFTPEAGGGGGILTIVH 76 (197)
Q Consensus 32 ~~Ilv~vd~s~~s----------~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~ 76 (197)
..+.|.+|+.+.- ....+|-..+ .+.+...+..+.
T Consensus 14 ~~lcvGlDP~~~~l~~~~~~~~~~~~~~f~~~i----------vd~~~~~v~~vK 58 (278)
T PRK00125 14 GSLCVGLDPHPSLLPAWGLSGDADGLFEFCRII----------VDATADLVAAFK 58 (278)
T ss_pred CCEEEEECCChHhcccccccccHHHHHHHHHHH----------HHhcCCcccEEe
Confidence 3477777775443 4556666666 556666654443
No 459
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.27 E-value=3.9e+02 Score=20.26 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+..+.+.+++.|..+......++.. ..+++.....++|-||+........ ... -+....+||+.+-.
T Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-------~~~-~~~~~~ipvV~~~~ 86 (264)
T cd06274 16 RIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDD-------PYY-LCQKAGLPVVALDR 86 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-------HHH-HHHhcCCCEEEecC
Confidence 344445555666777665544444443 3556666677999888865432111 112 24456789988854
No 460
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=20.25 E-value=3.2e+02 Score=20.69 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.5
Q ss_pred hcCCCcEEEECC
Q 046290 180 HHAVCPIIIVKP 191 (197)
Q Consensus 180 ~~~~~pVliv~~ 191 (197)
...++|++.++.
T Consensus 67 ~~~~~p~~~v~G 78 (240)
T cd07402 67 AALPIPVYLLPG 78 (240)
T ss_pred hhcCCCEEEeCC
Confidence 333455555443
No 461
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=20.13 E-value=4.8e+02 Score=21.21 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC-C----hhhHHHHHHHHcCCCEEEEccCCCC-chhhhhccchhHHHhhcCCCc
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG-D----PKDMICQSAEQMHIDLLVVGSRGLG-KIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g-~----~~~~I~~~a~~~~~dllVlG~~~~~-~~~~~~~gs~~~~ll~~~~~p 185 (197)
...+.++.+++.+ ++.+...++-| + ....+++..++.+++.|.+-.+.+. ...+..-=+...++...+++|
T Consensus 109 ~~~~iv~~~~~~~---~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ip 185 (309)
T PF01207_consen 109 LLAEIVKAVRKAV---PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIP 185 (309)
T ss_dssp HHHHHHHHHHHH----SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSE
T ss_pred HhhHHHHhhhccc---ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccce
Confidence 3444444444433 36666666665 2 1466777888889999988765322 111111112335677777888
Q ss_pred EEEE
Q 046290 186 IIIV 189 (197)
Q Consensus 186 Vliv 189 (197)
|+.=
T Consensus 186 vi~N 189 (309)
T PF01207_consen 186 VIAN 189 (309)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 8753
No 462
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.13 E-value=4.6e+02 Score=20.93 Aligned_cols=49 Identities=12% Similarity=-0.011 Sum_probs=29.7
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCc-h-hhhhccchhHHHhhcCCCcEEEECCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGK-I-KRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~-~-~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+-.+.+.+++.++|-+++....... . ...+ -..-..+.. ++||++..-+
T Consensus 80 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i-~~yf~~v~~--~lpv~iYn~P 130 (279)
T cd00953 80 SIELARAAKSFGIYAIASLPPYYFPGIPEEWL-IKYFTDISS--PYPTFIYNYP 130 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHH-HHHHHHHHh--cCCEEEEeCc
Confidence 4445677999999999997664322 1 1111 122233444 7999999643
No 463
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=20.09 E-value=3e+02 Score=21.60 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 144 ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 144 I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
.++.+.+.+.|.|++|.+..- ..--...+...+-+ .+.||++.|...
T Consensus 24 ~~~~~~~~gtdai~vGGS~~v--t~~~~~~~v~~ik~-~~lPvilfp~~~ 70 (232)
T PRK04169 24 ALEAICESGTDAIIVGGSDGV--TEENVDELVKAIKE-YDLPVILFPGNI 70 (232)
T ss_pred HHHHHHhcCCCEEEEcCCCcc--chHHHHHHHHHHhc-CCCCEEEeCCCc
Confidence 336666678999999976422 11112344444444 889999998754
Done!