Query 046290
Match_columns 197
No_of_seqs 135 out of 1817
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 3.8E-27 1.3E-31 169.8 14.8 142 29-190 3-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 1.6E-26 5.6E-31 169.5 17.7 152 30-193 4-161 (162)
3 2dum_A Hypothetical protein PH 99.9 4.7E-26 1.6E-30 168.4 17.1 154 29-194 3-159 (170)
4 3hgm_A Universal stress protei 99.9 8.3E-27 2.9E-31 168.1 10.6 144 30-189 1-147 (147)
5 3idf_A USP-like protein; unive 99.9 4.6E-26 1.6E-30 162.7 14.0 136 31-190 1-138 (138)
6 3fg9_A Protein of universal st 99.9 8.3E-26 2.8E-30 164.8 14.6 140 28-190 12-156 (156)
7 1tq8_A Hypothetical protein RV 99.9 7.1E-26 2.4E-30 166.9 14.2 144 29-194 15-161 (163)
8 3tnj_A Universal stress protei 99.9 3.2E-26 1.1E-30 165.8 11.1 146 28-193 3-149 (150)
9 2gm3_A Unknown protein; AT3G01 99.9 4.2E-25 1.4E-29 164.1 16.0 152 29-193 3-165 (175)
10 2z08_A Universal stress protei 99.9 2.2E-25 7.4E-30 159.2 11.9 136 30-190 1-137 (137)
11 3dlo_A Universal stress protei 99.9 1.8E-25 6E-30 163.5 10.9 132 28-190 21-155 (155)
12 3fdx_A Putative filament prote 99.9 7.9E-25 2.7E-29 157.1 8.9 137 32-190 2-143 (143)
13 3mt0_A Uncharacterized protein 99.9 2.4E-24 8.1E-29 172.1 12.5 154 7-192 116-277 (290)
14 3loq_A Universal stress protei 99.9 4.7E-24 1.6E-28 170.7 13.2 145 6-194 149-293 (294)
15 3olq_A Universal stress protei 99.9 2.5E-24 8.6E-29 173.8 11.7 160 7-193 138-307 (319)
16 3cis_A Uncharacterized protein 99.9 5.7E-24 1.9E-28 171.4 12.6 158 7-193 149-308 (309)
17 3olq_A Universal stress protei 99.9 2E-23 6.7E-28 168.6 14.1 148 28-193 4-152 (319)
18 1jmv_A USPA, universal stress 99.9 1.8E-23 6.2E-28 149.7 10.0 139 30-193 1-140 (141)
19 3loq_A Universal stress protei 99.9 4.2E-23 1.4E-27 165.1 11.0 144 28-193 19-164 (294)
20 3cis_A Uncharacterized protein 99.9 2.8E-22 9.7E-27 161.4 14.5 144 27-193 15-163 (309)
21 3ab8_A Putative uncharacterize 99.9 3.4E-22 1.2E-26 157.6 11.7 149 32-193 1-151 (268)
22 1q77_A Hypothetical protein AQ 99.9 5.3E-22 1.8E-26 141.6 10.4 132 29-190 2-138 (138)
23 3mt0_A Uncharacterized protein 99.9 8.5E-22 2.9E-26 157.3 10.4 125 28-192 4-129 (290)
24 3ab8_A Putative uncharacterize 99.9 8.1E-22 2.8E-26 155.5 9.2 131 8-190 138-268 (268)
25 2iel_A Hypothetical protein TT 97.1 0.027 9.1E-07 39.1 12.7 130 31-189 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 95.3 0.22 7.6E-06 39.6 11.0 94 31-162 24-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 94.7 0.18 6.2E-06 42.4 9.3 95 31-162 18-129 (464)
28 4b4k_A N5-carboxyaminoimidazol 93.6 0.97 3.3E-05 32.8 9.8 69 117-193 38-110 (181)
29 2ywx_A Phosphoribosylaminoimid 92.9 0.82 2.8E-05 32.5 8.5 68 116-191 14-82 (157)
30 3trh_A Phosphoribosylaminoimid 92.5 1.1 3.9E-05 32.1 8.9 70 116-193 21-94 (169)
31 4grd_A N5-CAIR mutase, phospho 92.4 0.96 3.3E-05 32.6 8.4 69 117-193 28-100 (173)
32 1xmp_A PURE, phosphoribosylami 92.2 1.1 3.9E-05 32.1 8.6 70 116-193 26-99 (170)
33 2l69_A Rossmann 2X3 fold prote 92.0 0.71 2.4E-05 29.8 6.6 72 33-151 53-124 (134)
34 3kuu_A Phosphoribosylaminoimid 92.0 1.3 4.4E-05 32.0 8.7 70 116-193 27-100 (174)
35 3oow_A Phosphoribosylaminoimid 91.9 1.2 4.2E-05 31.8 8.4 70 116-193 20-93 (166)
36 3rg8_A Phosphoribosylaminoimid 91.8 1.6 5.5E-05 31.1 8.9 70 116-193 17-91 (159)
37 1u11_A PURE (N5-carboxyaminoim 91.2 1.5 5E-05 31.9 8.3 70 116-193 36-109 (182)
38 2xry_A Deoxyribodipyrimidine p 91.1 2.5 8.4E-05 35.5 11.0 122 33-191 38-161 (482)
39 3ors_A N5-carboxyaminoimidazol 91.1 1.6 5.6E-05 31.1 8.3 70 116-193 18-91 (163)
40 3lp6_A Phosphoribosylaminoimid 90.9 1.2 4E-05 32.2 7.5 70 116-193 22-95 (174)
41 3bl5_A Queuosine biosynthesis 90.2 4.2 0.00014 29.8 11.7 36 31-80 3-38 (219)
42 1efp_B ETF, protein (electron 90.2 0.82 2.8E-05 35.2 6.7 79 40-164 35-125 (252)
43 3g40_A Na-K-CL cotransporter; 90.2 1.5 5E-05 34.5 8.0 91 66-194 190-280 (294)
44 1sur_A PAPS reductase; assimil 90.0 3 0.0001 30.7 9.6 35 32-80 45-79 (215)
45 1o4v_A Phosphoribosylaminoimid 90.0 2.1 7.3E-05 31.1 8.2 70 116-193 28-101 (183)
46 1o97_C Electron transferring f 89.5 2.8 9.5E-05 32.4 9.2 84 36-164 31-124 (264)
47 3umv_A Deoxyribodipyrimidine p 89.4 4 0.00014 34.6 10.9 126 33-191 39-168 (506)
48 1efv_B Electron transfer flavo 89.1 0.8 2.7E-05 35.3 5.9 97 40-186 38-146 (255)
49 1k92_A Argininosuccinate synth 88.5 2.8 9.4E-05 35.1 9.1 37 30-80 9-45 (455)
50 3k32_A Uncharacterized protein 88.3 2.9 9.9E-05 30.7 8.3 38 29-80 4-41 (203)
51 2wq7_A RE11660P; lyase-DNA com 88.2 5.6 0.00019 34.0 11.1 129 32-191 29-161 (543)
52 1zun_A Sulfate adenylyltransfe 88.0 2 6.9E-05 34.2 7.7 93 31-163 46-157 (325)
53 2hma_A Probable tRNA (5-methyl 87.9 4.8 0.00016 32.7 10.1 37 30-80 8-44 (376)
54 2ejb_A Probable aromatic acid 87.4 3.3 0.00011 30.3 8.0 35 32-77 2-36 (189)
55 1ni5_A Putative cell cycle pro 87.2 2.8 9.5E-05 34.7 8.4 92 31-162 13-118 (433)
56 2nz2_A Argininosuccinate synth 86.9 5 0.00017 33.1 9.7 36 31-80 5-40 (413)
57 3ih5_A Electron transfer flavo 86.3 3.5 0.00012 30.8 7.9 86 31-162 3-101 (217)
58 2j07_A Deoxyribodipyrimidine p 85.9 7.9 0.00027 31.9 10.5 108 42-191 14-121 (420)
59 1owl_A Photolyase, deoxyribodi 85.3 13 0.00044 31.2 11.6 116 41-191 14-129 (484)
60 1vl2_A Argininosuccinate synth 85.3 6.8 0.00023 32.4 9.7 38 29-80 12-49 (421)
61 3rjz_A N-type ATP pyrophosphat 84.4 7.1 0.00024 29.6 8.8 92 32-162 5-100 (237)
62 2pg3_A Queuosine biosynthesis 82.9 12 0.00042 27.7 11.8 36 31-80 2-37 (232)
63 3kcq_A Phosphoribosylglycinami 82.2 13 0.00046 27.6 10.3 41 122-162 52-92 (215)
64 1iv0_A Hypothetical protein; r 82.0 3.6 0.00012 26.6 5.5 55 139-194 38-96 (98)
65 1np7_A DNA photolyase; protein 82.0 22 0.00074 29.8 13.9 128 33-191 7-137 (489)
66 2h31_A Multifunctional protein 81.9 7.2 0.00025 32.3 8.4 69 116-192 280-353 (425)
67 2der_A TRNA-specific 2-thiouri 80.3 19 0.00065 29.2 10.4 98 29-162 15-142 (380)
68 3g40_A Na-K-CL cotransporter; 79.9 20 0.00068 28.1 12.4 120 32-191 21-146 (294)
69 2e0i_A 432AA long hypothetical 79.1 18 0.00062 30.0 10.1 115 41-191 12-126 (440)
70 2j4d_A Cryptochrome 3, cryptoc 78.8 29 0.00099 29.4 13.5 129 32-191 40-174 (525)
71 2ywb_A GMP synthase [glutamine 78.6 21 0.00071 30.1 10.5 35 32-80 210-244 (503)
72 1dnp_A DNA photolyase; DNA rep 77.8 9.9 0.00034 31.8 8.2 100 71-191 29-130 (471)
73 3da8_A Probable 5'-phosphoribo 77.6 19 0.00066 26.7 9.5 42 121-162 53-99 (215)
74 2oq2_A Phosphoadenosine phosph 77.6 20 0.00069 27.2 9.4 39 31-80 41-79 (261)
75 3fy4_A 6-4 photolyase; DNA rep 76.7 9.4 0.00032 32.6 7.8 134 31-190 4-139 (537)
76 2o8v_A Phosphoadenosine phosph 76.4 19 0.00064 27.2 8.9 34 32-79 46-79 (252)
77 1nu0_A Hypothetical protein YQ 75.7 4 0.00014 28.3 4.4 54 139-192 40-97 (138)
78 1kor_A Argininosuccinate synth 75.4 18 0.00063 29.5 9.1 36 32-80 1-36 (400)
79 3tvs_A Cryptochrome-1; circadi 75.2 6.1 0.00021 33.7 6.3 117 41-189 15-134 (538)
80 1u3d_A Cryptochrome 1 apoprote 75.0 37 0.0013 28.6 13.5 123 33-191 13-138 (509)
81 3p9x_A Phosphoribosylglycinami 73.1 26 0.00088 26.0 10.7 85 31-162 2-91 (211)
82 3nbm_A PTS system, lactose-spe 72.1 6.4 0.00022 25.9 4.6 63 117-191 23-86 (108)
83 1vhx_A Putative holliday junct 70.9 4.3 0.00015 28.4 3.7 55 139-193 42-100 (150)
84 3o1l_A Formyltetrahydrofolate 70.3 35 0.0012 26.7 9.2 83 31-162 105-191 (302)
85 1qv9_A F420-dependent methylen 67.0 12 0.00041 28.5 5.5 47 142-192 54-100 (283)
86 2wsi_A FAD synthetase; transfe 66.7 18 0.00061 28.4 6.9 102 32-164 54-169 (306)
87 3zqu_A Probable aromatic acid 65.8 6.9 0.00024 29.1 4.1 37 30-77 3-39 (209)
88 1g63_A Epidermin modifying enz 65.8 6.7 0.00023 28.4 3.9 37 30-77 1-37 (181)
89 2l2q_A PTS system, cellobiose- 65.8 24 0.00084 22.8 6.5 61 119-191 23-84 (109)
90 2dpl_A GMP synthetase, GMP syn 65.8 33 0.0011 26.8 8.3 36 32-80 21-56 (308)
91 1ccw_A Protein (glutamate muta 65.4 29 0.00098 23.5 7.0 66 121-189 24-91 (137)
92 2c5s_A THII, probable thiamine 64.3 57 0.002 26.6 11.7 35 31-79 187-221 (413)
93 2pju_A Propionate catabolism o 63.6 43 0.0015 24.9 8.9 61 120-192 28-91 (225)
94 2yxb_A Coenzyme B12-dependent 63.4 29 0.00098 24.3 6.9 64 122-189 40-106 (161)
95 4ds3_A Phosphoribosylglycinami 62.2 44 0.0015 24.6 10.2 85 31-162 7-96 (209)
96 2ehh_A DHDPS, dihydrodipicolin 62.1 53 0.0018 25.4 8.8 76 114-190 56-133 (294)
97 3d0c_A Dihydrodipicolinate syn 61.6 56 0.0019 25.6 9.2 75 114-190 68-144 (314)
98 2vc6_A MOSA, dihydrodipicolina 60.8 53 0.0018 25.3 8.6 76 114-190 56-133 (292)
99 2q5c_A NTRC family transcripti 60.7 45 0.0015 24.1 8.7 49 132-192 30-79 (196)
100 1jq5_A Glycerol dehydrogenase; 60.1 42 0.0014 26.8 8.1 70 116-193 46-120 (370)
101 2yxg_A DHDPS, dihydrodipicolin 60.1 55 0.0019 25.2 8.6 76 114-190 56-133 (289)
102 2ojp_A DHDPS, dihydrodipicolin 59.7 49 0.0017 25.5 8.2 77 114-191 57-135 (292)
103 2r8w_A AGR_C_1641P; APC7498, d 59.6 63 0.0022 25.5 9.5 77 114-191 90-168 (332)
104 3tqi_A GMP synthase [glutamine 59.6 12 0.00043 31.7 5.1 36 32-80 231-266 (527)
105 3n0v_A Formyltetrahydrofolate 59.3 60 0.0021 25.1 10.7 83 31-162 90-176 (286)
106 3fni_A Putative diflavin flavo 59.0 30 0.001 24.0 6.3 48 116-165 21-69 (159)
107 2qv7_A Diacylglycerol kinase D 58.1 38 0.0013 26.6 7.5 71 116-192 43-115 (337)
108 2l69_A Rossmann 2X3 fold prote 58.1 9.7 0.00033 24.4 3.1 43 117-159 15-57 (134)
109 3lou_A Formyltetrahydrofolate 57.8 65 0.0022 25.1 10.7 83 31-162 95-181 (292)
110 2ywr_A Phosphoribosylglycinami 57.2 55 0.0019 24.1 9.7 41 121-162 44-90 (216)
111 2v9d_A YAGE; dihydrodipicolini 57.0 72 0.0025 25.3 9.0 76 114-190 87-164 (343)
112 2rfg_A Dihydrodipicolinate syn 56.8 66 0.0023 24.9 8.7 76 114-190 56-133 (297)
113 3hly_A Flavodoxin-like domain; 56.7 32 0.0011 23.8 6.1 46 117-164 18-63 (161)
114 1vbk_A Hypothetical protein PH 56.7 68 0.0023 25.0 10.1 33 31-78 179-211 (307)
115 3s40_A Diacylglycerol kinase; 56.6 49 0.0017 25.6 7.8 70 116-192 27-98 (304)
116 3ecs_A Translation initiation 56.2 72 0.0025 25.1 9.8 61 123-191 167-231 (315)
117 3dff_A Teicoplanin pseudoaglyc 55.4 67 0.0023 24.5 10.7 49 141-189 137-185 (273)
118 1f6k_A N-acetylneuraminate lya 55.3 57 0.002 25.2 7.9 76 114-190 60-137 (293)
119 3cpr_A Dihydrodipicolinate syn 55.1 72 0.0025 24.8 8.8 75 115-190 73-149 (304)
120 3eb2_A Putative dihydrodipicol 54.7 73 0.0025 24.7 8.6 76 115-191 61-138 (300)
121 3a5f_A Dihydrodipicolinate syn 54.7 52 0.0018 25.4 7.6 76 114-190 57-134 (291)
122 1xky_A Dihydrodipicolinate syn 54.5 73 0.0025 24.7 9.2 76 114-190 68-145 (301)
123 3tqr_A Phosphoribosylglycinami 54.4 63 0.0021 23.9 10.3 84 31-162 5-93 (215)
124 1y80_A Predicted cobalamin bin 54.1 48 0.0016 24.0 7.0 67 122-191 110-179 (210)
125 1o5k_A DHDPS, dihydrodipicolin 53.6 77 0.0026 24.6 9.1 76 114-190 68-145 (306)
126 3qjg_A Epidermin biosynthesis 53.4 21 0.0007 25.7 4.7 37 30-77 4-40 (175)
127 1p3y_1 MRSD protein; flavoprot 52.9 18 0.00062 26.4 4.4 37 30-77 7-43 (194)
128 3m5v_A DHDPS, dihydrodipicolin 52.2 80 0.0027 24.4 8.8 77 114-190 63-141 (301)
129 2i2x_B MTAC, methyltransferase 52.1 68 0.0023 24.2 7.8 67 122-191 145-212 (258)
130 2bon_A Lipid kinase; DAG kinas 52.0 72 0.0025 24.9 8.1 69 118-192 47-119 (332)
131 2wkj_A N-acetylneuraminate lya 52.0 75 0.0026 24.7 8.1 76 114-190 67-145 (303)
132 3h5i_A Response regulator/sens 51.8 46 0.0016 21.6 9.0 64 124-193 25-88 (140)
133 1v6t_A Hypothetical UPF0271 pr 51.7 78 0.0027 24.2 8.8 107 33-162 30-146 (255)
134 3a11_A Translation initiation 51.6 89 0.0031 24.8 9.1 60 124-191 188-251 (338)
135 3obi_A Formyltetrahydrofolate 48.3 56 0.0019 25.3 6.8 84 30-162 88-176 (288)
136 2nwr_A 2-dehydro-3-deoxyphosph 48.1 63 0.0021 24.8 6.9 64 117-192 64-127 (267)
137 2dfa_A Hypothetical UPF0271 pr 47.8 75 0.0026 24.2 7.1 122 33-187 30-161 (250)
138 1xw8_A UPF0271 protein YBGL; N 47.3 92 0.0031 23.7 8.3 71 107-187 76-156 (252)
139 3l52_A Orotidine 5'-phosphate 47.0 79 0.0027 24.5 7.4 36 32-77 23-68 (284)
140 3o1i_D Periplasmic protein TOR 46.4 88 0.003 23.2 8.7 69 115-190 22-94 (304)
141 2r91_A 2-keto-3-deoxy-(6-phosp 46.4 95 0.0033 23.8 7.9 52 139-190 75-129 (286)
142 3tak_A DHDPS, dihydrodipicolin 45.7 1E+02 0.0034 23.7 8.6 76 114-190 57-134 (291)
143 3vk5_A MOEO5; TIM barrel, tran 45.2 42 0.0014 26.1 5.5 47 144-191 58-105 (286)
144 1vp8_A Hypothetical protein AF 45.0 41 0.0014 24.7 5.0 78 112-191 27-106 (201)
145 3ezx_A MMCP 1, monomethylamine 44.9 60 0.002 23.8 6.2 66 122-190 114-184 (215)
146 2x5e_A UPF0271 protein PA4511; 43.8 98 0.0033 23.6 7.2 106 33-161 36-151 (252)
147 3ayv_A Putative uncharacterize 43.6 76 0.0026 23.2 6.8 80 45-152 75-154 (254)
148 3pm6_A Putative fructose-bisph 43.6 35 0.0012 26.8 4.9 68 122-189 20-88 (306)
149 3na8_A Putative dihydrodipicol 43.4 1.2E+02 0.004 23.7 8.8 76 114-190 80-157 (315)
150 3flu_A DHDPS, dihydrodipicolin 43.1 1.1E+02 0.0038 23.5 8.8 76 114-190 63-140 (297)
151 3b4u_A Dihydrodipicolinate syn 43.0 87 0.003 24.1 7.2 75 115-190 60-140 (294)
152 3en0_A Cyanophycinase; serine 42.3 65 0.0022 25.0 6.3 59 121-181 77-139 (291)
153 3qze_A DHDPS, dihydrodipicolin 41.8 1.2E+02 0.0042 23.6 9.0 77 114-191 79-157 (314)
154 2ppv_A Uncharacterized protein 41.6 43 0.0015 26.7 5.2 50 140-192 167-218 (332)
155 3elf_A Fructose-bisphosphate a 41.6 53 0.0018 26.4 5.7 70 120-189 12-93 (349)
156 3inp_A D-ribulose-phosphate 3- 41.2 44 0.0015 25.3 5.0 44 116-160 181-224 (246)
157 3l21_A DHDPS, dihydrodipicolin 40.5 1.3E+02 0.0043 23.4 8.8 76 114-190 71-148 (304)
158 3q0i_A Methionyl-tRNA formyltr 40.4 1E+02 0.0035 24.2 7.3 40 120-162 55-95 (318)
159 1sbz_A Probable aromatic acid 40.3 38 0.0013 24.7 4.4 36 32-77 1-36 (197)
160 3nrb_A Formyltetrahydrofolate 40.3 81 0.0028 24.4 6.5 24 31-54 88-111 (287)
161 3egc_A Putative ribose operon 40.1 1.1E+02 0.0038 22.6 10.5 71 115-193 25-97 (291)
162 1meo_A Phosophoribosylglycinam 40.0 1.1E+02 0.0037 22.4 9.7 84 32-162 1-89 (209)
163 3f6p_A Transcriptional regulat 39.9 68 0.0023 20.1 8.3 60 124-191 22-81 (120)
164 2p0y_A Hypothetical protein LP 39.8 42 0.0014 26.8 4.9 49 140-191 178-228 (341)
165 1xrs_A D-lysine 5,6-aminomutas 39.6 1.1E+02 0.0038 25.4 7.3 45 130-174 152-199 (516)
166 1o97_D Electron transferring f 39.5 1.4E+02 0.0047 23.5 10.1 75 41-162 15-97 (320)
167 3m9w_A D-xylose-binding peripl 39.4 1.2E+02 0.0041 22.8 10.2 71 116-192 20-92 (313)
168 1qzu_A Hypothetical protein MD 39.2 35 0.0012 25.1 4.1 38 30-77 18-55 (206)
169 3r89_A Orotidine 5'-phosphate 39.1 1.3E+02 0.0046 23.3 8.3 96 31-160 17-129 (290)
170 3jy6_A Transcriptional regulat 39.1 1.1E+02 0.0039 22.4 10.2 70 114-192 23-94 (276)
171 3cg0_A Response regulator rece 39.0 75 0.0025 20.3 8.3 48 142-192 44-91 (140)
172 2gkg_A Response regulator homo 38.9 69 0.0024 19.9 7.0 45 142-189 39-86 (127)
173 1t9k_A Probable methylthioribo 38.7 68 0.0023 25.7 6.0 62 124-191 204-269 (347)
174 2o2z_A Hypothetical protein; s 38.5 49 0.0017 26.2 5.1 50 140-192 168-219 (323)
175 1gvf_A Tagatose-bisphosphate a 38.5 43 0.0015 26.0 4.7 69 121-189 10-80 (286)
176 3w01_A Heptaprenylglyceryl pho 38.4 80 0.0027 23.7 6.0 47 143-192 27-73 (235)
177 3eod_A Protein HNR; response r 37.9 75 0.0026 20.0 7.5 62 123-192 26-88 (130)
178 2f6u_A GGGPS, (S)-3-O-geranylg 37.8 60 0.0021 24.4 5.3 48 142-192 23-70 (234)
179 2qjg_A Putative aldolase MJ040 37.7 1.3E+02 0.0043 22.6 8.0 70 115-192 132-211 (273)
180 3l6u_A ABC-type sugar transpor 37.6 1.2E+02 0.0042 22.3 10.7 72 115-192 25-98 (293)
181 2nuw_A 2-keto-3-deoxygluconate 37.4 81 0.0028 24.2 6.2 52 139-190 76-130 (288)
182 3auf_A Glycinamide ribonucleot 36.9 1.3E+02 0.0044 22.4 11.3 41 121-162 65-111 (229)
183 1w3i_A EDA, 2-keto-3-deoxy glu 36.4 86 0.0029 24.1 6.2 52 139-190 76-130 (293)
184 3q94_A Fructose-bisphosphate a 36.2 54 0.0019 25.5 4.9 69 121-189 13-86 (288)
185 3ctl_A D-allulose-6-phosphate 36.1 79 0.0027 23.5 5.7 44 117-161 154-198 (231)
186 2q7x_A UPF0052 protein SP_1565 36.1 48 0.0016 26.3 4.7 49 140-191 174-224 (326)
187 3daq_A DHDPS, dihydrodipicolin 35.8 1.5E+02 0.005 22.8 7.9 75 115-190 59-135 (292)
188 3hv2_A Response regulator/HD d 35.8 92 0.0031 20.4 7.9 64 121-192 31-95 (153)
189 4dad_A Putative pilus assembly 35.5 89 0.0031 20.2 6.5 52 137-192 51-104 (146)
190 1gpm_A GMP synthetase, XMP ami 35.5 1.6E+02 0.0056 24.7 8.2 36 32-80 228-263 (525)
191 3vzx_A Heptaprenylglyceryl pho 35.5 86 0.0029 23.4 5.8 47 143-192 22-68 (228)
192 2amj_A Modulator of drug activ 35.3 1E+02 0.0034 22.2 6.1 48 113-162 32-80 (204)
193 3rot_A ABC sugar transporter, 35.2 1.4E+02 0.0047 22.2 8.9 71 116-192 21-95 (297)
194 2yvk_A Methylthioribose-1-phos 34.5 1E+02 0.0034 25.0 6.4 62 124-191 229-294 (374)
195 3e61_A Putative transcriptiona 34.4 1.3E+02 0.0046 21.9 7.8 70 114-192 24-95 (277)
196 3av3_A Phosphoribosylglycinami 34.1 1.4E+02 0.0046 21.8 10.1 43 120-162 45-92 (212)
197 3hs3_A Ribose operon repressor 33.4 1.4E+02 0.0049 21.9 7.2 66 114-192 26-94 (277)
198 4f2d_A L-arabinose isomerase; 33.2 2E+02 0.0069 24.1 8.3 84 107-196 21-110 (500)
199 3dm5_A SRP54, signal recogniti 33.2 2.1E+02 0.007 23.7 10.6 48 120-167 147-197 (443)
200 3l49_A ABC sugar (ribose) tran 33.1 1.4E+02 0.0049 21.9 8.5 72 115-192 22-95 (291)
201 1jkx_A GART;, phosphoribosylgl 33.0 1.4E+02 0.0049 21.8 10.1 42 121-162 43-89 (212)
202 3gv0_A Transcriptional regulat 33.0 1.5E+02 0.005 21.9 8.8 71 114-192 26-98 (288)
203 3p52_A NH(3)-dependent NAD(+) 32.9 1.5E+02 0.0053 22.1 8.2 36 31-79 26-61 (249)
204 3uhj_A Probable glycerol dehyd 32.6 1.2E+02 0.0041 24.5 6.7 71 116-194 67-141 (387)
205 3si9_A DHDPS, dihydrodipicolin 32.6 1.8E+02 0.006 22.7 8.8 76 114-190 78-155 (315)
206 3f6c_A Positive transcription 31.9 97 0.0033 19.5 8.2 43 146-192 40-83 (134)
207 1mvl_A PPC decarboxylase athal 31.9 50 0.0017 24.3 3.9 36 30-77 18-53 (209)
208 1of8_A Phospho-2-dehydro-3-deo 31.7 1.5E+02 0.0051 23.9 6.9 66 112-192 136-204 (370)
209 2q9u_A A-type flavoprotein; fl 31.7 1.9E+02 0.0066 22.9 8.8 49 114-164 271-319 (414)
210 3mc3_A DSRE/DSRF-like family p 31.7 1E+02 0.0036 20.5 5.3 39 31-80 15-57 (134)
211 1t5o_A EIF2BD, translation ini 31.6 91 0.0031 24.9 5.7 62 124-191 202-266 (351)
212 1vb5_A Translation initiation 31.4 1.7E+02 0.0059 22.3 11.2 40 152-192 177-220 (276)
213 3qk7_A Transcriptional regulat 31.2 1.6E+02 0.0055 21.8 10.5 70 115-192 27-97 (294)
214 1nmo_A Hypothetical protein YB 31.1 60 0.0021 24.4 4.4 31 30-77 34-64 (247)
215 3cu2_A Ribulose-5-phosphate 3- 30.9 1.2E+02 0.0042 22.6 6.1 46 114-161 171-219 (237)
216 3l4e_A Uncharacterized peptida 30.7 54 0.0018 23.9 3.9 43 116-160 45-87 (206)
217 3dbi_A Sugar-binding transcrip 30.7 1.8E+02 0.006 22.1 9.8 71 115-192 80-152 (338)
218 1viz_A PCRB protein homolog; s 29.7 87 0.003 23.5 5.0 48 142-192 23-70 (240)
219 1y5e_A Molybdenum cofactor bio 29.5 1.1E+02 0.0039 21.2 5.4 40 120-159 36-79 (169)
220 3i42_A Response regulator rece 28.8 1.1E+02 0.0037 19.1 8.4 48 142-193 37-87 (127)
221 3uug_A Multiple sugar-binding 28.5 1.9E+02 0.0064 21.7 9.4 72 115-192 20-93 (330)
222 2q8u_A Exonuclease, putative; 28.3 48 0.0016 25.8 3.5 24 114-139 47-70 (336)
223 1ydg_A Trp repressor binding p 28.2 71 0.0024 22.8 4.3 11 152-162 78-88 (211)
224 3bul_A Methionine synthase; tr 28.1 1.4E+02 0.0048 25.7 6.5 67 122-191 120-187 (579)
225 3e96_A Dihydrodipicolinate syn 28.0 2.1E+02 0.0072 22.2 8.1 75 114-190 68-144 (316)
226 2j48_A Two-component sensor ki 27.8 1E+02 0.0035 18.5 8.1 47 142-192 35-84 (119)
227 3k4h_A Putative transcriptiona 27.5 1.8E+02 0.0062 21.3 8.3 70 115-192 30-101 (292)
228 1uf3_A Hypothetical protein TT 27.3 1E+02 0.0034 21.8 5.0 6 134-139 36-41 (228)
229 1s8n_A Putative antiterminator 27.2 1.6E+02 0.0054 20.4 8.4 48 138-190 45-92 (205)
230 3h75_A Periplasmic sugar-bindi 27.2 2.1E+02 0.0071 21.8 9.3 70 116-192 22-95 (350)
231 3iwt_A 178AA long hypothetical 27.1 1.3E+02 0.0043 21.0 5.4 40 120-159 45-88 (178)
232 3grc_A Sensor protein, kinase; 27.1 1.2E+02 0.0043 19.2 7.3 47 142-192 40-89 (140)
233 3ce9_A Glycerol dehydrogenase; 26.8 1.1E+02 0.0038 24.0 5.5 69 116-193 49-122 (354)
234 1tqx_A D-ribulose-5-phosphate 26.7 1.6E+02 0.0053 21.8 5.9 55 123-177 109-163 (227)
235 3dx5_A Uncharacterized protein 26.6 1.2E+02 0.0041 22.5 5.5 43 110-152 118-163 (286)
236 1ta9_A Glycerol dehydrogenase; 26.6 2.7E+02 0.0092 22.9 8.7 69 116-193 106-179 (450)
237 1qkk_A DCTD, C4-dicarboxylate 26.3 1.4E+02 0.0047 19.5 6.0 46 142-191 37-83 (155)
238 3ctl_A D-allulose-6-phosphate 26.2 73 0.0025 23.7 4.0 45 117-163 95-139 (231)
239 3rpe_A MDAB, modulator of drug 26.2 1.6E+02 0.0054 21.6 5.9 46 115-162 47-93 (218)
240 3qw3_A Orotidine-5-phosphate d 25.8 98 0.0034 23.5 4.7 24 31-54 13-37 (255)
241 3h5d_A DHDPS, dihydrodipicolin 25.7 2.3E+02 0.008 21.9 8.3 75 115-190 64-141 (311)
242 2is8_A Molybdopterin biosynthe 25.7 1.2E+02 0.0041 21.0 4.9 40 120-159 26-69 (164)
243 3kke_A LACI family transcripti 25.5 2.1E+02 0.0071 21.3 9.2 69 115-192 32-103 (303)
244 3inp_A D-ribulose-phosphate 3- 25.5 67 0.0023 24.3 3.7 59 117-177 123-181 (246)
245 3o3m_A Alpha subunit 2-hydroxy 25.5 70 0.0024 26.0 4.1 56 139-194 321-376 (408)
246 2b4a_A BH3024; flavodoxin-like 25.4 1.3E+02 0.0046 19.0 6.9 45 142-190 49-95 (138)
247 2vzf_A NADH-dependent FMN redu 25.0 1.6E+02 0.0055 20.7 5.6 12 152-163 69-80 (197)
248 2yvq_A Carbamoyl-phosphate syn 25.0 1.1E+02 0.0037 20.8 4.5 61 125-187 64-129 (143)
249 3ksm_A ABC-type sugar transpor 24.7 2E+02 0.0068 20.8 8.7 71 116-192 18-93 (276)
250 3m47_A Orotidine 5'-phosphate 24.7 2.1E+02 0.0072 21.0 6.8 32 31-77 12-43 (228)
251 2ohh_A Type A flavoprotein FPR 24.5 2.6E+02 0.0088 21.9 9.9 46 115-162 272-317 (404)
252 2qr3_A Two-component system re 24.4 1.4E+02 0.0048 18.9 7.1 64 121-191 20-88 (140)
253 1rvg_A Fructose-1,6-bisphospha 24.4 1.3E+02 0.0043 23.7 5.1 68 121-189 9-78 (305)
254 1w2w_B 5-methylthioribose-1-ph 24.3 49 0.0017 24.0 2.7 61 125-191 27-93 (191)
255 1xng_A NH(3)-dependent NAD(+) 24.3 2.1E+02 0.0071 21.4 6.4 35 31-78 25-59 (268)
256 3lua_A Response regulator rece 24.2 1.4E+02 0.0049 18.9 6.2 48 142-192 39-90 (140)
257 3c3d_A 2-phospho-L-lactate tra 24.0 1.2E+02 0.004 23.9 4.9 47 140-191 173-221 (311)
258 3hcw_A Maltose operon transcri 24.0 2.2E+02 0.0076 21.0 8.2 71 114-192 28-100 (295)
259 3hdv_A Response regulator; PSI 23.8 1.4E+02 0.0049 18.8 7.9 61 125-192 28-90 (136)
260 3kht_A Response regulator; PSI 23.7 1.5E+02 0.0051 19.0 8.1 65 122-192 23-90 (144)
261 2rgy_A Transcriptional regulat 23.4 2.2E+02 0.0077 20.9 8.4 70 115-192 25-99 (290)
262 3cg4_A Response regulator rece 23.3 1.5E+02 0.0051 18.8 8.1 47 142-192 41-90 (142)
263 3hzh_A Chemotaxis response reg 23.2 1.6E+02 0.0056 19.3 8.1 61 125-192 57-120 (157)
264 1dos_A Aldolase class II; lyas 23.1 90 0.0031 25.1 4.2 70 120-189 20-107 (358)
265 3g1w_A Sugar ABC transporter; 23.1 2.3E+02 0.0079 20.9 9.4 72 115-192 21-95 (305)
266 3tva_A Xylose isomerase domain 23.0 1.8E+02 0.0062 21.6 5.9 43 110-153 134-176 (290)
267 3lqk_A Dipicolinate synthase s 22.5 58 0.002 23.8 2.8 37 30-77 6-43 (201)
268 3uow_A GMP synthetase; structu 22.5 3.6E+02 0.012 22.9 8.1 37 31-80 255-291 (556)
269 2xdq_A Light-independent proto 22.4 42 0.0014 27.7 2.2 46 138-183 113-159 (460)
270 2xxa_A Signal recognition part 22.3 3.2E+02 0.011 22.3 9.5 23 144-166 175-197 (433)
271 2isw_A Putative fructose-1,6-b 22.1 1.4E+02 0.0049 23.5 5.1 70 120-189 9-81 (323)
272 3ouz_A Biotin carboxylase; str 21.9 1.2E+02 0.0041 24.5 4.9 35 29-78 4-38 (446)
273 2goy_A Adenosine phosphosulfat 21.8 1.2E+02 0.0041 23.0 4.6 34 32-80 55-88 (275)
274 2au3_A DNA primase; zinc ribbo 21.7 1.8E+02 0.006 23.6 5.8 35 32-76 288-322 (407)
275 1mkz_A Molybdenum cofactor bio 21.7 2.1E+02 0.0071 20.0 5.6 40 120-159 33-76 (172)
276 1nmo_A Hypothetical protein YB 21.6 1.2E+02 0.0041 22.7 4.5 50 142-191 176-243 (247)
277 3jvd_A Transcriptional regulat 21.4 2.7E+02 0.0093 21.1 6.9 63 115-191 81-144 (333)
278 1e2b_A Enzyme IIB-cellobiose; 21.4 77 0.0026 20.4 2.9 37 31-77 3-39 (106)
279 3miz_A Putative transcriptiona 21.4 1.8E+02 0.006 21.6 5.5 66 116-190 32-99 (301)
280 3n9r_A Fructose-bisphosphate a 21.2 1.3E+02 0.0043 23.7 4.6 70 120-189 8-80 (307)
281 3kbq_A Protein TA0487; structu 21.2 1.7E+02 0.0057 20.7 4.9 38 120-159 28-69 (172)
282 3kjx_A Transcriptional regulat 21.0 2.8E+02 0.0095 21.1 8.1 67 115-189 85-153 (344)
283 1t57_A Conserved protein MTH16 21.0 81 0.0028 23.2 3.2 75 112-189 35-111 (206)
284 3t8y_A CHEB, chemotaxis respon 21.0 1.9E+02 0.0065 19.2 7.9 49 138-191 58-106 (164)
285 2yyb_A Hypothetical protein TT 21.0 1E+02 0.0035 23.0 4.0 31 30-77 35-65 (242)
286 3gt7_A Sensor protein; structu 21.0 1.8E+02 0.0062 18.9 8.6 63 122-192 25-90 (154)
287 3tqq_A Methionyl-tRNA formyltr 20.9 3E+02 0.01 21.4 8.4 41 119-162 49-90 (314)
288 1tqj_A Ribulose-phosphate 3-ep 20.8 1.6E+02 0.0055 21.6 5.0 46 115-161 158-203 (230)
289 3r7f_A Aspartate carbamoyltran 20.8 3E+02 0.01 21.4 7.7 41 138-187 78-118 (304)
290 3rfq_A Pterin-4-alpha-carbinol 20.4 2.1E+02 0.0072 20.4 5.4 40 120-159 54-96 (185)
291 3mcu_A Dipicolinate synthase, 20.4 73 0.0025 23.4 2.9 36 31-77 5-41 (207)
292 1rrm_A Lactaldehyde reductase; 20.4 3.2E+02 0.011 21.6 8.0 45 116-160 47-97 (386)
293 1ylq_A Putative nucleotidyltra 20.3 40 0.0014 21.2 1.3 41 117-161 4-46 (96)
294 3tb6_A Arabinose metabolism tr 20.3 2.6E+02 0.0088 20.4 10.1 74 116-192 33-108 (298)
295 2a6a_A Hypothetical protein TM 20.3 1.6E+02 0.0055 21.6 4.9 39 151-190 65-104 (218)
296 2q62_A ARSH; alpha/beta, flavo 20.2 2.7E+02 0.0093 20.7 8.1 21 141-163 89-109 (247)
297 1rtt_A Conserved hypothetical 20.1 88 0.003 22.0 3.3 18 143-162 65-82 (193)
298 3exr_A RMPD (hexulose-6-phosph 20.0 2.6E+02 0.0089 20.4 7.3 32 31-77 5-36 (221)
299 2m1z_A LMO0427 protein; homolo 20.0 67 0.0023 20.9 2.4 42 120-163 25-68 (106)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=3.8e-27 Score=169.84 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=124.7
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
+++++||||+|+++.+..++++|+.+ |+..+++|+++||++......... ........+.
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~l----------a~~~~a~l~ll~v~~~~~~~~~~~----------~~~~~~~~~~ 62 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNI----------AQRHQANLTALYVVDDSAYHTPAL----------DPVLSELLDA 62 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHH----------HHHHTCEEEEEEEEECCCCCCGGG----------HHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEecCcccccccc----------ccccHHHHHH
Confidence 56899999999999999999999999 888899999999998764321110 0133455677
Q ss_pred HHHHHHHHHHHHHHHhHhcCC-ceEEEEecCChhhHHHH-HHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 109 QEENSAALLSRALQMCKDKMV-KAESLVLEGDPKDMICQ-SAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~-~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
.++..++.++++.+.+...|+ ++++.+..|++.+.|++ ++++.++||||||+++++++.++++||++++++++++|||
T Consensus 63 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pV 142 (146)
T 3s3t_A 63 EAAHAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNV 142 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCE
Confidence 778888899999999998899 99999999999999999 9999999999999999999999999999999999999999
Q ss_pred EEEC
Q 046290 187 IIVK 190 (197)
Q Consensus 187 liv~ 190 (197)
|+||
T Consensus 143 lvV~ 146 (146)
T 3s3t_A 143 IVIR 146 (146)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.95 E-value=1.6e-26 Score=169.51 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=122.8
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC-----cccccccCCcCccc-ccChhhHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF-----QRFVLPALSTSSAF-YATSSMVE 103 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~-----~~~~~~~~~~~~~~-~~~~~~~~ 103 (197)
++++||||+|+|+.+..++++|+.+ |+..+++|+++||+++. ......... .+. ........
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 71 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAF----------KTLKAEEVILLHVIDEREIKKRDIFSLLLGV--AGLNKSVEEFEN 71 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHT----------CCSSCCEEEEEEEEEGGGTC-------------------CHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHH----------HhhcCCeEEEEEEecCccccccccccccccc--cccccchhhhHH
Confidence 5899999999999999999999999 99999999999998864 110000000 000 00001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC
Q 046290 104 SVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV 183 (197)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~ 183 (197)
...+..++..++.++++.+.+...|+++++.+..|++.+.|++++++.++|+||||+++++++.++++||++++|+++++
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~ 151 (162)
T 1mjh_A 72 ELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCC
Confidence 45566677788889999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCCC
Q 046290 184 CPIIIVKPPK 193 (197)
Q Consensus 184 ~pVliv~~~~ 193 (197)
|||||||++.
T Consensus 152 ~pVlvv~~~~ 161 (162)
T 1mjh_A 152 KPVLVVKRKN 161 (162)
T ss_dssp SCEEEECCCC
T ss_pred CCEEEEeCCC
Confidence 9999999764
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.7e-26 Score=168.42 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=119.1
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccCh-hhHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATS-SMVESVRK 107 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 107 (197)
.++++||||+|+++.+..++++|+.+ |+..+++|+++||++.......... .. ..+..+ .......+
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 70 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKR----------NKMEVGEVILLHVIDEGTLEELMDG-YS-FFYDNAEIELKDIKE 70 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHH----------CCSCCSEEEEEEEEETTGGGCCC--------------CCTTSHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEecCccccccccc-cc-cccccccccHHHHHH
Confidence 46899999999999999999999999 9999999999999886532111100 00 000000 00012234
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEE--EEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAES--LVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~--~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
..++..++.++++.+.+...|+++++ .+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++||
T Consensus 71 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 71 KLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCC
Confidence 55666777888888888878898888 8889999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCC
Q 046290 186 IIIVKPPKE 194 (197)
Q Consensus 186 Vliv~~~~~ 194 (197)
|||||+...
T Consensus 151 Vlvv~~~~~ 159 (170)
T 2dum_A 151 VLIIKEVDE 159 (170)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCc
Confidence 999997654
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=8.3e-27 Score=168.10 Aligned_cols=144 Identities=23% Similarity=0.298 Sum_probs=119.5
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
|+++||||+|+|+.+..++++|+.+ |+..+++|+++||++............ .........+..
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~~~------~~~~~~~~~~~~ 64 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGL----------QQLTGAELYILCVFKHHSLLEASLSMA------RPEQLDIPDDAL 64 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHH----------HHHHCCEEEEEEEECCHHHHHHTBSSC------CCGGGCCCTTHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEecCccccccccccc------ChhhhhhHHHHH
Confidence 4789999999999999999999999 888899999999998754211111000 011112233556
Q ss_pred HHHHHHHHHHHHHHhHhcCCce---EEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 110 EENSAALLSRALQMCKDKMVKA---ESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~---~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
++..++.++++.+.+...|+++ ++.+..|++.+.|++++++.++||||||+++++++.++++||++++++++++|||
T Consensus 65 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pV 144 (147)
T 3hgm_A 65 KDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPV 144 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCE
Confidence 6777788888888898889888 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 046290 187 IIV 189 (197)
Q Consensus 187 liv 189 (197)
|+|
T Consensus 145 lvV 147 (147)
T 3hgm_A 145 LVV 147 (147)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 5
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.94 E-value=4.6e-26 Score=162.74 Aligned_cols=136 Identities=24% Similarity=0.356 Sum_probs=118.2
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCC-CCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEA-GGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A-~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
+++||||+|+|+.+..++++|+.+ | +..+++|+++||++........ ........+..
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~l----------a~~~~~a~l~ll~v~~~~~~~~~~-----------~~~~~~~~~~~ 59 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDM----------FGKDADCTLTLIHVKPEFMLYGEA-----------VLAAYDEIEMK 59 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHH----------HTTCTTEEEEEEEEECCCCCCHHH-----------HHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHH----------hccCCCCEEEEEEEecCCCccccc-----------ccCcHHHHHHH
Confidence 579999999999999999999999 8 8999999999999886432110 01122344556
Q ss_pred H-HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 110 E-ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 110 ~-~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
+ +..++.++++.+.+...|+++++.+..|++.+.|+++++ ++||||||+++++++.+++ ||++++++++++||||+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 60 EEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEE
Confidence 6 788889999999999899999999999999999999999 9999999999999999998 99999999999999999
Q ss_pred EC
Q 046290 189 VK 190 (197)
Q Consensus 189 v~ 190 (197)
||
T Consensus 137 v~ 138 (138)
T 3idf_A 137 VK 138 (138)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.94 E-value=8.3e-26 Score=164.82 Aligned_cols=140 Identities=22% Similarity=0.289 Sum_probs=119.7
Q ss_pred CCCccEEEEEeC--CCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHH
Q 046290 28 GKKKMKVMVAID--ESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESV 105 (197)
Q Consensus 28 ~~~~~~Ilv~vd--~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
++++++||||+| +++.+..++++|+.+ |+..+++|+++||++........ ......
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~~------------~~~~~~ 69 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTL----------AHDYDVPLGICSVLESEDINIFD------------SLTPSK 69 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHH----------HHHHTCCEEEEEEECCCCTTCCC------------SSHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEEeCCCccccc------------cCCHHH
Confidence 366999999999 999999999999999 88889999999999876432111 112345
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCC-ceEEEEec-CChhhHHHHH-HHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC
Q 046290 106 RKSQEENSAALLSRALQMCKDKMV-KAESLVLE-GDPKDMICQS-AEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA 182 (197)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~-g~~~~~I~~~-a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~ 182 (197)
.+..++..++.++++.+.+...|+ .+++.+.. |++.+.|+++ +++.++||||||+++++++. .++||+++++++++
T Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a 148 (156)
T 3fg9_A 70 IQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKA 148 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhC
Confidence 566777788889999888888899 58999999 9999999999 99999999999999999887 48999999999999
Q ss_pred CCcEEEEC
Q 046290 183 VCPIIIVK 190 (197)
Q Consensus 183 ~~pVliv~ 190 (197)
+||||+||
T Consensus 149 ~~PVlvV~ 156 (156)
T 3fg9_A 149 PISVIVVR 156 (156)
T ss_dssp SSEEEEEC
T ss_pred CCCEEEeC
Confidence 99999997
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.94 E-value=7.1e-26 Score=166.92 Aligned_cols=144 Identities=26% Similarity=0.285 Sum_probs=113.4
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEE--EeecCCcccccccCCcCcccccChhhHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIV--HVQEPFQRFVLPALSTSSAFYATSSMVESVR 106 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
.++++||||+|+|+.+..++++|+.+ |+ .+++|+++ ||++..... ... .. ....+.
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~l----------A~-~~a~l~ll~a~v~~~~~~~-~~~-~~---------~~~~~~ 72 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQI----------AG-ADAKLIIASAYLPQHEDAR-AAD-IL---------KDESYK 72 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHH----------HT-TTSEEEEEEECCC----------------------------
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHH----------hC-CCCEEEEEEeeeccCcccc-ccc-cc---------ccHHHH
Confidence 55899999999999999999999999 88 99999999 887654310 000 00 011222
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCc-eEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 107 KSQEENSAALLSRALQMCKDKMVK-AESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
+..++..++.++.+.+.+...|++ +++.+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++||
T Consensus 73 ~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~P 152 (163)
T 1tq8_A 73 VTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVD 152 (163)
T ss_dssp ---CCTHHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCC
Confidence 334455677888888888888998 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCC
Q 046290 186 IIIVKPPKE 194 (197)
Q Consensus 186 Vliv~~~~~ 194 (197)
|||||++..
T Consensus 153 VlvV~~~~~ 161 (163)
T 1tq8_A 153 VLIVHTTEG 161 (163)
T ss_dssp EEEECCC--
T ss_pred EEEEeCCCC
Confidence 999997643
No 8
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.94 E-value=3.2e-26 Score=165.78 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=101.8
Q ss_pred CCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 28 GKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 28 ~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+++++||||+|+|+.+..++++|+.+ |+.++++|+++||++............. . .......+
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~~~~--~----~~~~~~~~ 66 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNL----------ASQIGARLSLIHVLDNIPMPDTPYGTAI--P----LDTETTYD 66 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHH----------HHHHTCEEEEEEEEC--------CTTCC--C----SSSCCCHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHH----------HhhcCCEEEEEEEEcCcccccccccccc--C----cCHHHHHH
Confidence 567999999999999999999999999 8888999999999987543100000000 0 00111233
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCc-eEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 108 SQEENSAALLSRALQMCKDKMVK-AESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
...+..++.++++.+.+ |+. +++.+..|++.+.|++++++.++|+||||+++++++. +++||++++++++++|||
T Consensus 67 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pV 142 (150)
T 3tnj_A 67 AMLDVEKQKLSQIGNTL---GIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDV 142 (150)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCE
Confidence 44444555555544433 565 4677889999999999999999999999999999998 999999999999999999
Q ss_pred EEECCCC
Q 046290 187 IIVKPPK 193 (197)
Q Consensus 187 liv~~~~ 193 (197)
|+||++.
T Consensus 143 lvv~~~~ 149 (150)
T 3tnj_A 143 LAVRLRD 149 (150)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999864
No 9
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.93 E-value=4.2e-25 Score=164.12 Aligned_cols=152 Identities=33% Similarity=0.589 Sum_probs=109.7
Q ss_pred CCccEEEEEeCCCH---------HHHHHHHHHHHhcccccCCCCCCCC--CCcEEEEEEeecCCcccccccCCcCccccc
Q 046290 29 KKKMKVMVAIDESA---------ESFNALKWALDNLYGIVGFTPEAGG--GGGILTIVHVQEPFQRFVLPALSTSSAFYA 97 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~---------~s~~al~~a~~l~~~~~~~~~~A~~--~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~ 97 (197)
..+++|||++|+++ .+..++++|+.++ ++. .+++|+++||++........... .+.
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la---------~~~~~~~a~l~ll~v~~~~~~~~~~~~~----~~~ 69 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKI---------VRSNTSDFKILLLHVQVVDEDGFDDVDS----IYA 69 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHT---------TTTCTTSEEEEEEEEEC----------C----CCC
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHh---------hcccCCCCEEEEEEEeeccccccccccc----ccC
Confidence 45789999999999 9999999999982 243 68999999998754321110000 011
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHH
Q 046290 98 TSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDY 177 (197)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ 177 (197)
.......+.++..+..++.++.+.+.+...|+++++.+..|++.+.|++++++.++||||||+++++++.++++||++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~ 149 (175)
T 2gm3_A 70 SPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAF 149 (175)
T ss_dssp SHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHH
Confidence 11222333344556677788888888888899999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcEEEECCCC
Q 046290 178 CAHHAVCPIIIVKPPK 193 (197)
Q Consensus 178 ll~~~~~pVliv~~~~ 193 (197)
|+++++|||||||+..
T Consensus 150 vl~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 150 CVKHAECPVMTIKRNA 165 (175)
T ss_dssp HHHHCSSCEEEEECCG
T ss_pred HHhCCCCCEEEEcCCc
Confidence 9999999999998753
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.93 E-value=2.2e-25 Score=159.23 Aligned_cols=136 Identities=32% Similarity=0.497 Sum_probs=107.1
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
|+++||||+|+++.+..++++|+.+ |+.++++|+++||.++.... . .. . ..+...+..
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~-~-~~------~----~~~~~~~~~ 58 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAE----------AEAHGARLIVVHAYEPVPDY-L-GE------P----FFEEALRRR 58 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHH----------HHHHTCEEEEEEEECC--------------------------CHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHH----------HhhcCCEEEEEEEecCCCcc-c-cc------c----chHHHHHHH
Confidence 4789999999999999999999999 88889999999998753210 0 00 0 001122333
Q ss_pred HHHHHHHHHHHHHHhHhcCC-ceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 110 EENSAALLSRALQMCKDKMV-KAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
++..++.++++.+. .|+ ++++.+..|++.+.|++++++.++|+||||+++++++.++++||++++++++++|||++
T Consensus 59 ~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 59 LERAEGVLEEARAL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp HHHHHHHHHHHHHH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEE
Confidence 44555555555443 577 77888889999999999999999999999999999999999999999999999999999
Q ss_pred EC
Q 046290 189 VK 190 (197)
Q Consensus 189 v~ 190 (197)
||
T Consensus 136 v~ 137 (137)
T 2z08_A 136 VR 137 (137)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.93 E-value=1.8e-25 Score=163.50 Aligned_cols=132 Identities=24% Similarity=0.288 Sum_probs=113.9
Q ss_pred CCCccEEEEEeCC-CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHH
Q 046290 28 GKKKMKVMVAIDE-SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVR 106 (197)
Q Consensus 28 ~~~~~~Ilv~vd~-s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
.+++++||||+|+ ++.+..++++|+.+ |+..+++|+++||.+..... .
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~l----------a~~~~a~l~llhV~~~~~~~---------------------~ 69 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEE----------ARLRGVPVYVVHSLPGGGRT---------------------K 69 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHH----------HHHHTCCEEEEEEECCSTTS---------------------C
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEEcCCCcc---------------------c
Confidence 4679999999999 99999999999999 88889999999998864210 1
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCceEEE--EecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 107 KSQEENSAALLSRALQMCKDKMVKAESL--VLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~v~~~~~--~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
+...+..++.++++.+.+...|+.++.. +..|++.+.|++++++.++||||||+++++++.++++||++++++++++|
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~ 149 (155)
T 3dlo_A 70 DEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANK 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCC
Confidence 3344566778888888888888877654 55699999999999999999999999999999999999999999999999
Q ss_pred cEEEEC
Q 046290 185 PIIIVK 190 (197)
Q Consensus 185 pVliv~ 190 (197)
|||+|+
T Consensus 150 PVLvVr 155 (155)
T 3dlo_A 150 PVICIK 155 (155)
T ss_dssp CEEEEC
T ss_pred CEEEeC
Confidence 999986
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.91 E-value=7.9e-25 Score=157.08 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=105.4
Q ss_pred cEEEEEeCCCHH--HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 32 MKVMVAIDESAE--SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 32 ~~Ilv~vd~s~~--s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
++||||+|+|+. +..++++|+.+ |+..+++|+++||++........... . ....+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~~----------~-~~~~~~~ 60 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESE----------ARIDDAEVHFLTVIPSLPYYASLGMA----------Y-TAELPGM 60 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHH----------HHHHTCEEEEEEEECC---------------------------CH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHH----------HHhcCCeEEEEEEecCCccccccccc----------c-cchhhhH
Confidence 689999999999 99999999999 88889999999999875422111100 0 0011223
Q ss_pred HHHHHHHHHHHHHHhHhcC---CceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 110 EENSAALLSRALQMCKDKM---VKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~---v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
++..++.++.+.+.+...+ +.+++.+..|++.+.|++++++.++||||||+++ +++.++++||++++++++++|||
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pV 139 (143)
T 3fdx_A 61 DELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSV 139 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCE
Confidence 3444455555666666654 4578889999999999999999999999999995 88888999999999999999999
Q ss_pred EEEC
Q 046290 187 IIVK 190 (197)
Q Consensus 187 liv~ 190 (197)
|+||
T Consensus 140 lvv~ 143 (143)
T 3fdx_A 140 LVVR 143 (143)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 13
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=2.4e-24 Score=172.15 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=118.5
Q ss_pred CCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHH-------HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 7 PGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAE-------SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 7 ~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~-------s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
...+.||||+++..... .+++||||+|+++. +..++++|..+ |+..+++|+++||++
T Consensus 116 l~~~~~PVlvv~~~~~~------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~l----------a~~~~a~l~ll~v~~ 179 (290)
T 3mt0_A 116 LRFAPCPVLMTKTARPW------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDI----------AGLAKATLHVISAHP 179 (290)
T ss_dssp HHHCSSCEEEECCCSCS------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHH----------HHHTTCEEEEEEEEC
T ss_pred HhcCCCCEEEecCCCCC------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHH----------HHHcCCeEEEEEEec
Confidence 34477999999954432 38899999999998 99999999999 888899999999998
Q ss_pred CCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCC-ceEEEEecCChhhHHHHHHHHcCCCEEEE
Q 046290 80 PFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMV-KAESLVLEGDPKDMICQSAEQMHIDLLVV 158 (197)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~~a~~~~~dllVl 158 (197)
....... . +.. ...+..++...+.++.+. +..|+ .+.+.+..|++.+.|++++++.++|||||
T Consensus 180 ~~~~~~~--~---------~~~--~~~~~~~~~~~~~l~~~~---~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVm 243 (290)
T 3mt0_A 180 SPMLSSA--D---------PTF--QLSETIEARYREACRTFQ---AEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVI 243 (290)
T ss_dssp --------------------CH--HHHHHHHHHHHHHHHHHH---HHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEE
T ss_pred Ccccccc--C---------chh--HHHHHHHHHHHHHHHHHH---HHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEE
Confidence 7543211 0 011 233334444444444443 33466 35677888999999999999999999999
Q ss_pred ccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 159 GSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 159 G~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
|+++++++.++++||++++++++++||||+||+.
T Consensus 244 G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 244 GTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp ECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred CCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 9999999999999999999999999999999874
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=4.7e-24 Score=170.67 Aligned_cols=145 Identities=24% Similarity=0.275 Sum_probs=124.5
Q ss_pred cCCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccc
Q 046290 6 VPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFV 85 (197)
Q Consensus 6 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~ 85 (197)
+...+.||||+++...... ..+++|||++|+++.+..++++|..+ |+..+++|+++||.+...
T Consensus 149 vl~~~~~PVlvv~~~~~~~----~~~~~Ilv~~d~s~~s~~al~~a~~l----------a~~~~~~l~ll~v~~~~~--- 211 (294)
T 3loq_A 149 VLHDSKVPVYIFKHDMVVN----SLFDRVLVAYDFSKWADRALEYAKFV----------VKKTGGELHIIHVSEDGD--- 211 (294)
T ss_dssp HHHHCSSCEEEECCCTTTT----CTTSEEEEECCSSHHHHHHHHHHHHH----------HHHHTCEEEEEEECSSSC---
T ss_pred HHhcCCCCEEEecCccccC----ccCCEEEEEECCCHHHHHHHHHHHHH----------hhhcCCEEEEEEEccCch---
Confidence 3445779999999866421 34789999999999999999999999 777899999999987642
Q ss_pred cccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCc
Q 046290 86 LPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~ 165 (197)
.++.++.+.+.+...|+++++.+..|++.+.|.+++++.++||||||++++++
T Consensus 212 ---------------------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~ 264 (294)
T 3loq_A 212 ---------------------------KTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGS 264 (294)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSC
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCC
Confidence 12345555666666788999999999999999999999999999999999999
Q ss_pred hhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 166 IKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 166 ~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
+.++++||++++++++++||||+||++.+
T Consensus 265 ~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 265 VMTMILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred ccceeeCcHHHHHHhcCCCCEEEECCCCC
Confidence 99999999999999999999999998654
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=2.5e-24 Score=173.79 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=124.4
Q ss_pred CCCCCCcccccccccCCCCCCCCCccEEEEEeCCCH-------HHHHHHHHHHHhcccccCCCCCCCCC--CcEEEEEEe
Q 046290 7 PGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESA-------ESFNALKWALDNLYGIVGFTPEAGGG--GGILTIVHV 77 (197)
Q Consensus 7 ~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~-------~s~~al~~a~~l~~~~~~~~~~A~~~--~~~l~lv~v 77 (197)
...+.||||+++.... ..+++|||++|+++ .+..++++|..+ |+.. +++|+++||
T Consensus 138 l~~~~~PVlvv~~~~~------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~l----------a~~~~~~a~l~ll~v 201 (319)
T 3olq_A 138 LRKCPAPVWMVKDKEW------PEYGTIVVAANLSNEESYHDALNLKLIELTNDL----------SHRIQKDPDVHLLSA 201 (319)
T ss_dssp HHHCSSCEEEEESSCC------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHH----------HHHHCSSCCEEEEEE
T ss_pred HhcCCCCEEEecCccc------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHH----------HHhccCCCeEEEEEe
Confidence 3447899999997653 24789999999998 679999999999 8888 899999999
Q ss_pred ecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCC-ceEEEEecCChhhHHHHHHHHcCCCEE
Q 046290 78 QEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMV-KAESLVLEGDPKDMICQSAEQMHIDLL 156 (197)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~~a~~~~~dll 156 (197)
++..........+ ......+.++.++...+.++.+. +..|+ .+..++..|++.+.|++++++.++|||
T Consensus 202 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLi 270 (319)
T 3olq_A 202 YPVAPINIAIELP--------DFDPNLYNNALRGQHLIAMKELR---QKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIV 270 (319)
T ss_dssp ECCCSCSCCTTCT--------TCCHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEE
T ss_pred ecCcchhhhccCC--------cccHHHHHHHHHHHHHHHHHHHH---HHhCCCcccEEEecCCcHHHHHHHHHHhCCCEE
Confidence 9876532211100 11123344445555555555544 34454 355677889999999999999999999
Q ss_pred EEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 157 VVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 157 VlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
|||+++++++.++++||++++++++++||||+||+..
T Consensus 271 V~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 271 VLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp EEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred EEeccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 9999999999999999999999999999999998854
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=5.7e-24 Score=171.39 Aligned_cols=158 Identities=22% Similarity=0.266 Sum_probs=120.8
Q ss_pred CCCCCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCccccc
Q 046290 7 PGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVL 86 (197)
Q Consensus 7 ~~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~ 86 (197)
...+.||||+++....... ...+++|||++|+++.+..++++|..+ |+..+++|+++||++.......
T Consensus 149 l~~~~~PVlvv~~~~~~~~--~~~~~~Ilv~~D~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~ 216 (309)
T 3cis_A 149 LRHAHCPVVIIHDEDSVMP--HPQQAPVLVGVDGSSASELATAIAFDE----------ASRRNVDLVALHAWSDVDVSEW 216 (309)
T ss_dssp HHHCSSCEEEECTTCCCSC--SSCCCCEEEECCSSHHHHHHHHHHHHH----------HHHTTCCEEEEEESCSSCCTTC
T ss_pred HHhCCCCEEEEcCCcccCC--CCCCCeEEEEeCCChHHHHHHHHHHHH----------HHhcCCEEEEEEEeecccccCC
Confidence 3346799999997654210 134689999999999999999999999 8888999999999876432100
Q ss_pred ccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHh--cCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 87 PALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKD--KMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
. .... +...+..++.++++.+.+.. .++.+++.+..|++.+.|+++++ ++||||||+++++
T Consensus 217 ~-----------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~ 279 (309)
T 3cis_A 217 P-----------GIDW----PATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRG 279 (309)
T ss_dssp S-----------SCCH----HHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSS
T ss_pred C-----------cccH----HHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCC
Confidence 0 0001 12233334444444444433 47888888999999999999998 9999999999999
Q ss_pred chhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 165 KIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 165 ~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
++.++++||++++|+++++||||+||+..
T Consensus 280 ~~~~~l~Gsv~~~vl~~~~~pVlvv~~~~ 308 (309)
T 3cis_A 280 GYAGMLVGSVGETVAQLARTPVIVARESL 308 (309)
T ss_dssp CCTTCSSCHHHHHHHHHCSSCEEEECC--
T ss_pred CccccccCcHHHHHHhcCCCCEEEeCCCC
Confidence 99999999999999999999999999754
No 17
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=2e-23 Score=168.56 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=122.1
Q ss_pred CCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 28 GKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 28 ~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+++++|||++|+|+.+..+++||+.+ |+..+++|+++|+++....... ............+
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~l----------A~~~~a~l~ll~v~~~~~~~~~--------~~~~~~~~~~~~~ 65 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYI----------VQRNGGRIKAFLPVYDLSYDMT--------TLLSPDERNAMRK 65 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHH----------HHHHCCEEEEEEEECCGGGGCT--------TTSCHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHH----------HHHcCCeEEEEEEecccchhhc--------cccChhhHHHHHH
Confidence 466899999999999999999999999 8888999999999875432111 0111233344555
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
...+..++.++++.+.+...|+.+++.+. .|++.+.|.+.+++.++||||||+++.+++.++++||++++++++++|||
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PV 145 (319)
T 3olq_A 66 GVINQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPV 145 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCE
Confidence 66677778888888888888999999999 89999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC
Q 046290 187 IIVKPPK 193 (197)
Q Consensus 187 liv~~~~ 193 (197)
|+||+..
T Consensus 146 lvv~~~~ 152 (319)
T 3olq_A 146 WMVKDKE 152 (319)
T ss_dssp EEEESSC
T ss_pred EEecCcc
Confidence 9998754
No 18
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.90 E-value=1.8e-23 Score=149.72 Aligned_cols=139 Identities=23% Similarity=0.228 Sum_probs=103.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
|+++||||+|+|+.+..++++|..+ |+..+++|+++||.+....... .. . ........+..
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~-~~-~-------~~~~~~~~~~~ 61 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGI----------AKRHDAKLSIIHVDVNFSDLYT-GL-I-------DVNMSSMQDRI 61 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHH----------HHHHTCEEEEEEEEECCGGGCC-CC-E-------EHHHHHHTTCC
T ss_pred CCceEEEEecCchhhHHHHHHHHHH----------HHhcCCEEEEEEEecCchhhhc-cc-c-------ccchHHHHHHH
Confidence 4789999999999999999999999 8888999999999854221110 00 0 01111122222
Q ss_pred HHHHHHHHHHHHHHhHhcCCce-EEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 110 EENSAALLSRALQMCKDKMVKA-ESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
.+..++.++++. +..|+.+ +..+..|++.+.|++++++.++||||||++ ++++.+ +||++++++++++||||+
T Consensus 62 ~~~~~~~l~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlv 135 (141)
T 1jmv_A 62 STETQKALLDLA---ESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLV 135 (141)
T ss_dssp CCHHHHHHHHHH---HHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHH---HHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEE
Confidence 233444444443 3446665 567778999999999999999999999999 888877 389999999999999999
Q ss_pred ECCCC
Q 046290 189 VKPPK 193 (197)
Q Consensus 189 v~~~~ 193 (197)
||+..
T Consensus 136 v~~~~ 140 (141)
T 1jmv_A 136 VPLRD 140 (141)
T ss_dssp EECCC
T ss_pred eeCCC
Confidence 99753
No 19
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=4.2e-23 Score=165.12 Aligned_cols=144 Identities=23% Similarity=0.264 Sum_probs=121.3
Q ss_pred CCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 28 GKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 28 ~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+|+++|||++|+|+.+..++++|+.+ |+..+++|+++||++.........+ .......+
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~l----------A~~~~a~l~ll~v~~~~~~~~~~~~----------~~~~~~~~ 78 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDF----------KKVGVEEIGVLFVINLTKLSTVSGG----------IDIDHYID 78 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHH----------HHTTCCEEEEECCEECTTC-----C----------CCTTHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHH----------HhhcCCEEEEEEEecCccccccccc----------ccHHHHHH
Confidence 467899999999999999999999999 8899999999999987643211110 11233445
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEE-EEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAES-LVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
..++..++.++++.+.+...|+++++ .+. .|++.+.| ++++.++|+||||+++++.+.++++||++++++++++||
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~P 156 (294)
T 3loq_A 79 EMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVP 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCC
Confidence 66677788888888888888999988 777 89999999 899999999999999999999999999999999999999
Q ss_pred EEEECCCC
Q 046290 186 IIIVKPPK 193 (197)
Q Consensus 186 Vliv~~~~ 193 (197)
|++||+..
T Consensus 157 Vlvv~~~~ 164 (294)
T 3loq_A 157 VYIFKHDM 164 (294)
T ss_dssp EEEECCCT
T ss_pred EEEecCcc
Confidence 99999865
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.89 E-value=2.8e-22 Score=161.42 Aligned_cols=144 Identities=25% Similarity=0.377 Sum_probs=116.4
Q ss_pred CCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHH
Q 046290 27 DGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVR 106 (197)
Q Consensus 27 ~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (197)
...++++|||++|+|+.+..++++|+.+ |+..+++|+++||+++.... +.... . .....
T Consensus 15 ~~~~~~~ILv~~D~s~~s~~al~~A~~l----------A~~~~a~l~ll~v~~~~~~~-~~~~~-----~-----~~~~~ 73 (309)
T 3cis_A 15 SGNSSLGIIVGIDDSPAAQVAVRWAARD----------AELRKIPLTLVHAVSPEVAT-WLEVP-----L-----PPGVL 73 (309)
T ss_dssp ---CTTEEEEECCSSHHHHHHHHHHHHH----------HHHHTCCEEEEEECCCCCCC-TTCCC-----C-----CHHHH
T ss_pred ccCCCCeEEEEECCCHHHHHHHHHHHHH----------HHhcCCcEEEEEEecCcccc-cccCC-----C-----Cchhh
Confidence 3456899999999999999999999999 88889999999998743211 11100 0 11233
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-----CCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 107 KSQEENSAALLSRALQMCKDK-----MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~-----~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
+..++..++.++++.+.+... |+++++.+..|++.+.|+++++ ++||||||+++++++.++++||++++++++
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~ 151 (309)
T 3cis_A 74 RWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRH 151 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHh
Confidence 445566677777777777765 8999999999999999999997 899999999999999999999999999999
Q ss_pred CCCcEEEECCCC
Q 046290 182 AVCPIIIVKPPK 193 (197)
Q Consensus 182 ~~~pVliv~~~~ 193 (197)
++|||++||+..
T Consensus 152 ~~~PVlvv~~~~ 163 (309)
T 3cis_A 152 AHCPVVIIHDED 163 (309)
T ss_dssp CSSCEEEECTTC
T ss_pred CCCCEEEEcCCc
Confidence 999999999765
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=3.4e-22 Score=157.63 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=116.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccC-hhhHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYAT-SSMVESVRKSQE 110 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 110 (197)
++||||+|+|+.+..++++|+.+ |+..+++|+++||++.............. .... ..+.+...+...
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~l----------A~~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 69 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWL----------AYKLSAPLTVLFVVDTRLARIPELLDFGA-LTVPVPVLRTELERALA 69 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHH----------HHHHTCCEEEEEEEEHHHHTHHHHC--------CHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHH----------HHHhCCcEEEEEEeccCCcccccccCchH-HHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 88889999999998764311100000000 0000 001111144556
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC-chhhhhccchhHHHhhcCCCcEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG-KIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~-~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+..++.++++.+.+...|+++++.+..|++.+.|+++ +.++|+||||+++++ ++.++++||++++++++++|||++|
T Consensus 70 ~~~~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv 147 (268)
T 3ab8_A 70 LRGEAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLA 147 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEE
Confidence 6778888888888888899999999999999999999 679999999999998 8999999999999999999999999
Q ss_pred CCCC
Q 046290 190 KPPK 193 (197)
Q Consensus 190 ~~~~ 193 (197)
|+..
T Consensus 148 ~~~~ 151 (268)
T 3ab8_A 148 PGEP 151 (268)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9754
No 22
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.87 E-value=5.3e-22 Score=141.59 Aligned_cols=132 Identities=13% Similarity=0.043 Sum_probs=102.0
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee-cC-C-cccccccCCcCcccccChhhHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ-EP-F-QRFVLPALSTSSAFYATSSMVESV 105 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
.++++|||++|+|+.+..++++|+.+ |+.++++|+++||+ +. + .......+ ... . ...
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~l----------a~~~~a~l~ll~v~~~~~~~~~~~~~~~------~~~-~--~~~ 62 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNF----------SEKLGAELDILAVLEDVYNLERANVTFG------LPF-P--PEI 62 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHH----------HTTTCCEEEEEEECHHHHHHHHHHHHHC------CCC-C--THH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHH----------HHHcCCeEEEEEEecccccccccccccC------CCC-C--hHH
Confidence 35899999999999999999999999 99999999999998 53 1 11000000 000 0 123
Q ss_pred HHHHHHHHHHHHHHHHHH--hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC
Q 046290 106 RKSQEENSAALLSRALQM--CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV 183 (197)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~--~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~ 183 (197)
.+...+..++.++++ +. +...| ++++.+..|++.+.|++++++.++||||||++++ |++++++++++
T Consensus 63 ~~~~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~ 131 (138)
T 1q77_A 63 KEESKKRIERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLN 131 (138)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSS
T ss_pred HHHHHHHHHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCC
Confidence 344455566667776 65 34556 7888888999999999999999999999999875 99999999999
Q ss_pred CcEEEEC
Q 046290 184 CPIIIVK 190 (197)
Q Consensus 184 ~pVliv~ 190 (197)
||||+||
T Consensus 132 ~PVlvv~ 138 (138)
T 1q77_A 132 LASLIVK 138 (138)
T ss_dssp SEEEECC
T ss_pred CceEeeC
Confidence 9999986
No 23
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.86 E-value=8.5e-22 Score=157.30 Aligned_cols=125 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred CCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 28 GKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 28 ~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
|+++++|||++|+|+.+..++++|+.+ |+..+++|+++|+.++.
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~l----------a~~~~a~l~ll~v~~~~-------------------------- 47 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLI----------AGVTQSHLHLLVCEKRR-------------------------- 47 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHH----------HHHHCCEEEEEEECSSS--------------------------
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHH----------HHhcCCeEEEEEeeCcH--------------------------
Confidence 456899999999999999999999999 88889999999998730
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
..++.++++.+.+...|+++++.+. .|++.+.|.+++++.++||||||+++++.+.++++||++++++++++|||
T Consensus 48 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PV 123 (290)
T 3mt0_A 48 ----DHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPV 123 (290)
T ss_dssp ----CCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCE
T ss_pred ----HHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCE
Confidence 1223444455555677899999888 57899999999999999999999999999999999999999999999999
Q ss_pred EEECCC
Q 046290 187 IIVKPP 192 (197)
Q Consensus 187 liv~~~ 192 (197)
|+||+.
T Consensus 124 lvv~~~ 129 (290)
T 3mt0_A 124 LMTKTA 129 (290)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999954
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=8.1e-22 Score=155.46 Aligned_cols=131 Identities=24% Similarity=0.279 Sum_probs=110.9
Q ss_pred CCCCCcccccccccCCCCCCCCCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccc
Q 046290 8 GGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLP 87 (197)
Q Consensus 8 ~~~~~~vl~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~ 87 (197)
..+.|||++++.... .+++|||++|+++.+..++++|..+ |+..+++++++|+.+..
T Consensus 138 ~~a~~PVlvv~~~~~-------~~~~ilv~~d~s~~~~~al~~a~~l----------a~~~~a~l~ll~v~~~~------ 194 (268)
T 3ab8_A 138 RASPVPVLLAPGEPV-------ELEGALLGYDASESAVRALHALAPL----------ARALGLGVRVVSVHEDP------ 194 (268)
T ss_dssp HHCSSCEEEECSSCC-------CCCEEEEECCSCHHHHHHHHHHHHH----------HHHHTCCEEEEEECSSH------
T ss_pred HhCCCCEEEECCCCC-------CCCEEEEEECCCHHHHHHHHHHHHh----------hhcCCCEEEEEEEcCcH------
Confidence 347799999997543 2679999999999999999999999 77779999999997652
Q ss_pred cCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchh
Q 046290 88 ALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIK 167 (197)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~ 167 (197)
+..++.++.+.+.+...|+++++.+..|++.+.|.+++++. ||||||+ ++.
T Consensus 195 -----------------------~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~ 245 (268)
T 3ab8_A 195 -----------------------ARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVR 245 (268)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCS
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----ccc
Confidence 12234555666666777899998888999999999999976 9999998 667
Q ss_pred hhhccchhHHHhhcCCCcEEEEC
Q 046290 168 RAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 168 ~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
++++||++++++++++||||++|
T Consensus 246 ~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 246 RLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp CCSSCCHHHHHHHHCSSCEEEEC
T ss_pred ccEeccHHHHHHhcCCCCEEEeC
Confidence 88999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.09 E-value=0.027 Score=39.12 Aligned_cols=130 Identities=12% Similarity=0.002 Sum_probs=90.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
|.+|||.+.-.-.+.........+. ++.....+.++- +..... .+.. ..++.+
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~---------~~~~~~~f~VLV--Pa~~~~----------a~~~------e~~~a~ 53 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELL---------AQDPEARFVLLV--PAVPPP----------GWVY------EENEVR 53 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHH---------HHCTTCEEEEEE--EEECCC----------CSCC--------CHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhh---------cCCCceEEEEEe--cCCCCc----------cccc------ChHHHH
Confidence 3689999987766665555545552 111125554432 222110 0000 224566
Q ss_pred HHHHHHHHHHHHHhHhcCCceE-EEEecCChhhHHHHHHHHcC--CCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAE-SLVLEGDPKDMICQSAEQMH--IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~-~~~~~g~~~~~I~~~a~~~~--~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
+.+++.++.....+...|+.+. -.+..+++...|.....+.+ +|=||+-+..+ ..++||....+.+.-+ ...||+
T Consensus 54 ~~A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVl 131 (138)
T 2iel_A 54 RRAEEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVI 131 (138)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEE
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEE
Confidence 6788888888889999999998 89999999999999999999 99999988764 5677888888888888 899998
Q ss_pred EE
Q 046290 188 IV 189 (197)
Q Consensus 188 iv 189 (197)
-+
T Consensus 132 hl 133 (138)
T 2iel_A 132 HV 133 (138)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=95.31 E-value=0.22 Score=39.57 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=64.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcE-EEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGI-LTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~-l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
.++|+|++.|+..|..++..+..+ .+..+.+ +.++|+.....
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~----------~~~~g~~~v~av~vd~g~r--------------------------- 66 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKL----------KNYFSLKEVALAHFNHMLR--------------------------- 66 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHS----------TTTTTCSEEEEEEEECCSS---------------------------
T ss_pred CCEEEEEecchHHHHHHHHHHHHH----------HHHcCCCEEEEEEEECCCC---------------------------
Confidence 468999999999999999888877 5556777 99999954321
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEec--------C-Ch--------hhHHHHHHHHcCCCEEEEccCC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLE--------G-DP--------KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+..+.+.+.|+..|+++...... | ++ ...+.+.+++.+++.|+.|.+.
T Consensus 67 -~~s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 67 -ESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp -THHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred -cccHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 012233445666677778877654432 1 11 1355667888899999999763
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=94.67 E-value=0.18 Score=42.36 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=66.9
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
..+|+|++.++..|..++..+..+ .+..+.++.++|+......
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~----------~~~~~~~v~avhvdhglrg--------------------------- 60 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSL----------RDEWKLQVIAAHVDHMFRG--------------------------- 60 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHH----------HHTTTCBCEEEEEECTTCT---------------------------
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHH----------HHHcCCeEEEEEEECCCCc---------------------------
Confidence 468999999999999999988887 4445788999999544210
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec--------C-Ch--------hhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE--------G-DP--------KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+..+.+.+.|+..|+++...-.. | ++ ...+.+++++.+++.|+.|.+.
T Consensus 61 ~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 61 RESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 112234455777788888877655442 1 11 2456677888899999999764
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=93.57 E-value=0.97 Score=32.81 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHHHHHHhHhcCCceEEEEecC-ChhhHHHHHH---HHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 117 LSRALQMCKDKMVKAESLVLEG-DPKDMICQSA---EQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a---~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+++.+.+++.|+.++..+..- ...+.+.+++ ++.+++++|.|+.+...+... +...+..||+-||..
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv--------vAa~T~~PVIGVPv~ 109 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHTTCCSCEEEEECC
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh--------HHhcCCCCEEEEecC
Confidence 3445566677889999888875 4455555555 456789999998776665543 445789999999985
Q ss_pred C
Q 046290 193 K 193 (197)
Q Consensus 193 ~ 193 (197)
.
T Consensus 110 s 110 (181)
T 4b4k_A 110 S 110 (181)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=92.91 E-value=0.82 Score=32.48 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ...+.+.+++++...+++|.++.....+... +...+++||+-||.
T Consensus 14 v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv--------va~~t~~PVIgVP~ 82 (157)
T 2ywx_A 14 IAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV--------VASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH--------HHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH--------HHhccCCCEEEecC
Confidence 34456666777899988888765 5778888888876669999988776655543 45577899999987
No 30
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=92.48 E-value=1.1 Score=32.11 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=49.0
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHH---HHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQS---AEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|+.++..+..- ...+.+.++ +++.+++++|.++.....+... +...+++||+-||.
T Consensus 21 v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 92 (169)
T 3trh_A 21 TMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--------IAAHTLKPVIGVPM 92 (169)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--------HHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--------HHhcCCCCEEEeec
Confidence 34456666778899998888764 344444444 5557899999998776655543 45578999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 93 ~~ 94 (169)
T 3trh_A 93 AG 94 (169)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=92.38 E-value=0.96 Score=32.60 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHhHhcCCceEEEEecC-ChhhHHHHH---HHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 117 LSRALQMCKDKMVKAESLVLEG-DPKDMICQS---AEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+++...++..|+.++..+..- ...+.+.++ ++..++++||.++.....+... +...+.+||+-||-.
T Consensus 28 ~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv--------vA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 28 MKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM--------LAAKTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH--------HHHHCCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh--------heecCCCCEEEEEcC
Confidence 3445556677889988888765 444555555 4446789999998776655543 455779999999854
Q ss_pred C
Q 046290 193 K 193 (197)
Q Consensus 193 ~ 193 (197)
.
T Consensus 100 ~ 100 (173)
T 4grd_A 100 S 100 (173)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=92.23 E-value=1.1 Score=32.13 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=49.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHH---cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQ---MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~---~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ...+.+.+++++ .++++||.++.....+... +...+++||+-||.
T Consensus 26 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 97 (170)
T 1xmp_A 26 TMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGVPV 97 (170)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--------HHhccCCCEEEeeC
Confidence 34456666677899998888765 556666666653 4589999988776655543 45577999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 98 ~~ 99 (170)
T 1xmp_A 98 QS 99 (170)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 33
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=92.02 E-value=0.71 Score=29.77 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=48.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
-++|.+|..+-+.+|+++...+ |+++.++ +++..+
T Consensus 53 ivvvvvddkewaekairfvksl--------------gaqvlii-iydqdq------------------------------ 87 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSL--------------GAQVLII-IYDQDQ------------------------------ 87 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH--------------CCCCEEE-EECSCH------------------------------
T ss_pred EEEEEEccHHHHHHHHHHHHhc--------------CCeEEEE-EEeCch------------------------------
Confidence 3455667777788999999888 7776555 334321
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHc
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQM 151 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~ 151 (197)
..++++.......|.++.+.....++.+.+-+..++.
T Consensus 88 --nrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 88 --NRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp --HHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 3455666777778888877555557777777777653
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=92.01 E-value=1.3 Score=32.00 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHH---HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAE---QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|+.++..+..- ...+.+.++++ ..++++||.++.....+... +...+.+||+-||.
T Consensus 27 v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 98 (174)
T 3kuu_A 27 TMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM--------LAAKTLVPVLGVPV 98 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH--------HHHTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--------HHhccCCCEEEeeC
Confidence 34456666678899998888765 45566666654 45789999998766655543 45578999999986
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 99 ~~ 100 (174)
T 3kuu_A 99 QS 100 (174)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 35
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=91.89 E-value=1.2 Score=31.83 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHH---cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQ---MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~---~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|+.++..+..- ...+.+.+++++ .+++++|.++.....+... +...+.+||+-||.
T Consensus 20 v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 91 (166)
T 3oow_A 20 TMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM--------VAAKTTLPVLGVPV 91 (166)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH--------HHhccCCCEEEeec
Confidence 34456666677889888888765 455666666553 4689999998776655543 45578999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 92 ~~ 93 (166)
T 3oow_A 92 KS 93 (166)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 36
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=91.80 E-value=1.6 Score=31.07 Aligned_cols=70 Identities=7% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHH---Hc-CCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAE---QM-HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~-~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+++...++..|+.++..+..- ...+.+.++++ .. ++++||.++.....+... +...+.+||+-||
T Consensus 17 v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 88 (159)
T 3rg8_A 17 HAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF--------VDGFVKGATIACP 88 (159)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH--------HHHHSSSCEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH--------HHhccCCCEEEee
Confidence 34456666777899988888765 45555656543 32 589999998776655543 4557899999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
...
T Consensus 89 ~~~ 91 (159)
T 3rg8_A 89 PPS 91 (159)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 37
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=91.15 E-value=1.5 Score=31.94 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=49.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHH---cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQ---MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~---~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|+.++..+..- ...+.+.+++++ .++++||.++.....+... +...+.+||+-||.
T Consensus 36 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 107 (182)
T 1u11_A 36 TMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM--------CAAWTRLPVLGVPV 107 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH--------HHhccCCCEEEeeC
Confidence 34455666677899998888765 456666666653 4589999988776655543 45577999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 108 ~~ 109 (182)
T 1u11_A 108 ES 109 (182)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 38
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=91.07 E-value=2.5 Score=35.55 Aligned_cols=122 Identities=20% Similarity=0.097 Sum_probs=77.2
Q ss_pred EEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 33 KVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 33 ~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
++|+=+ |.--....||..|+.. |...+.+|..|++.++.... . .....
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~----------a~~~~~~v~~vfi~dp~~~~---~-----------------~~~r~ 87 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAI----------AKEANVPVVVVFCLTDEFLE---A-----------------GIRQY 87 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHH----------HHHHTSCEEEEEEECTTGGG---S-----------------CHHHH
T ss_pred cEEEEecCCCCccccHHHHHHHHH----------HHHcCCcEEEEEEeChhhhc---c-----------------CHHHH
Confidence 445555 3334456777888776 44346789999999875421 0 12233
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.-..+.+..+.+.+++.|+.. .+..|++.+.|.+++++.+++.|+.-... ..... ...+.+...+.|++..+.
T Consensus 88 ~Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lgi~~~~~~ 160 (482)
T 2xry_A 88 EFMLKGLQELEVSLSRKKIPS--FFLRGDPGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGISIPFFEVD 160 (482)
T ss_dssp HHHHHHHHHHHHHHHHTTCCE--EEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCcE--EEEeCCHHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcCCEEEEEe
Confidence 344555666667777777755 45679999999999999999999986533 32222 222334444588887775
Q ss_pred C
Q 046290 191 P 191 (197)
Q Consensus 191 ~ 191 (197)
.
T Consensus 161 ~ 161 (482)
T 2xry_A 161 A 161 (482)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=91.07 E-value=1.6 Score=31.11 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=49.0
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHH---HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAE---QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ...+.+.++++ +.+++++|.++.....+... +...+++||+-||.
T Consensus 18 v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 89 (163)
T 3ors_A 18 IMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM--------VASLTTLPVIGVPI 89 (163)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--------HHhccCCCEEEeeC
Confidence 34556666778899998888764 45566656554 45689999998766655433 45578999999986
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 90 ~~ 91 (163)
T 3ors_A 90 ET 91 (163)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 40
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=90.91 E-value=1.2 Score=32.21 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=48.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-Chhh---HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKD---MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~---~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ...+ .+.+.+++.++++||.++.....+... +...+.+||+-||.
T Consensus 22 v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 93 (174)
T 3lp6_A 22 VMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM--------VAAATPLPVIGVPV 93 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH--------HHhccCCCEEEeeC
Confidence 34456666778899988888764 3344 444445667899999998766655433 45578999999986
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 94 ~~ 95 (174)
T 3lp6_A 94 PL 95 (174)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=90.24 E-value=4.2 Score=29.78 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++|+|++.+...|..++..+.+. +.++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~--------------~~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE--------------FEEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH--------------CSEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc--------------CCceEEEEEeCC
Confidence 468999999999999988888777 468888988654
No 42
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=90.19 E-value=0.82 Score=35.17 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCc--EEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAGGGGG--ILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALL 117 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~--~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (197)
.++.+..|+..|.++ +.. +. +++++.+-+.. .++.+
T Consensus 35 lnp~d~~Ale~A~~L----------ke~-g~~~~V~av~~G~~~-------------------------------a~~~l 72 (252)
T 1efp_B 35 MNPFDEIAVEEAIRL----------KEK-GQAEEIIAVSIGVKQ-------------------------------AAETL 72 (252)
T ss_dssp ECHHHHHHHHHHHHH----------HTT-TSCSEEEEEEEESGG-------------------------------GHHHH
T ss_pred CCHHHHHHHHHHHHH----------Hhc-CCCceEEEEEeCChh-------------------------------HHHHH
Confidence 468899999999999 655 55 89988775331 11222
Q ss_pred HHHHHHhHhcCCceEEEEe-c-----C-C---hhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 118 SRALQMCKDKMVKAESLVL-E-----G-D---PKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~-~-----g-~---~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
..+. ..|.+--.++. . + + .++.|...+++.++|+|++|.+...
T Consensus 73 r~al----a~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 73 RTAL----AMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp HHHH----HHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHH----hcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2221 22554434443 1 2 2 4567888888889999999987754
No 43
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=90.17 E-value=1.5 Score=34.48 Aligned_cols=91 Identities=8% Similarity=-0.008 Sum_probs=61.1
Q ss_pred CCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHH
Q 046290 66 GGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMIC 145 (197)
Q Consensus 66 ~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~ 145 (197)
+..+++++++-|++. +...+.++..++++.+.+.-. .... ++.+.+.+.|.
T Consensus 190 ~nW~A~I~L~~vV~d--------------------------e~a~~~a~~~l~~Lv~~~Ri~-a~~~--vv~~~F~~il~ 240 (294)
T 3g40_A 190 SNWKASLSFMTFAPT--------------------------AIQAQAAENFLQSLAELARIP-NVKM--QVLRENPIKSS 240 (294)
T ss_dssp HHHTCEEEEEEECSS--------------------------HHHHHHHHHHHHHHHHHHTCC-SCEE--EEESSCTTTSS
T ss_pred hCcCCeEEEEEecCC--------------------------HHHHHHHHHHHHHHHHHhcCC-ceEE--EecCchHHHHh
Confidence 345999999999877 445566677777777777632 2232 33365666665
Q ss_pred HHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 146 QSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 146 ~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
+ + -++|++++|-.....+. ..++++..+....+.+.+..+
T Consensus 241 ~-s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 241 K-L--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp S-C--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSC
T ss_pred h-C--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCch
Confidence 5 4 47999999997665554 336677777877788876543
No 44
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=90.02 E-value=3 Score=30.74 Aligned_cols=35 Identities=3% Similarity=-0.054 Sum_probs=29.1
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.+|+|++.++..|..++..+..+ +.++.++|+...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~--------------~~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQI--------------RPDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHH--------------STTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHh--------------CCCCeEEEeeCC
Confidence 48999999999999999988888 356888888554
No 45
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=89.97 E-value=2.1 Score=31.11 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=48.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHH---HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAE---QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++...++..|++++..+..- ...+.+.++++ ..++++||.++.....+... +...+++||+-||.
T Consensus 28 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~ 99 (183)
T 1o4v_A 28 VMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM--------VASITHLPVIGVPV 99 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH--------HHhccCCCEEEeeC
Confidence 34456666677899988888765 45555566654 45689999988766655443 45578999999997
Q ss_pred CC
Q 046290 192 PK 193 (197)
Q Consensus 192 ~~ 193 (197)
..
T Consensus 100 ~~ 101 (183)
T 1o4v_A 100 KT 101 (183)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=89.46 E-value=2.8 Score=32.38 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=53.4
Q ss_pred EEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCc--EEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHH
Q 046290 36 VAIDESAESFNALKWALDNLYGIVGFTPEAGGGGG--ILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENS 113 (197)
Q Consensus 36 v~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~--~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (197)
+....++.+..++..|.++ +...+. +++++.+-+.. .
T Consensus 31 ~~~~lnp~d~~ale~A~~L----------ke~~g~~~~V~av~~G~~~-------------------------------~ 69 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKI----------KESSDTDVEVVVVSVGPDR-------------------------------V 69 (264)
T ss_dssp EEEEECHHHHHHHHHHHHH----------HHHCSSCCEEEEEEESCGG-------------------------------G
T ss_pred CCCccCHHHHHHHHHHHHH----------HHhcCCCceEEEEEeCchh-------------------------------H
Confidence 3444568899999999999 655555 89888774321 1
Q ss_pred HHHHHHHHHHhHhcCCceEEEEec----C-C---hhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLE----G-D---PKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~----g-~---~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
++.+..+ -..|.+--+++.. + + .++.|...+++.++|+|++|.+...
T Consensus 70 ~~~lr~a----la~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 70 DESLRKC----LAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHHHHHH----HHTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHHHHHH----HhcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 1222222 2236544344432 1 2 3567888888889999999987654
No 47
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=89.42 E-value=4 Score=34.60 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=75.9
Q ss_pred EEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 33 KVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 33 ~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+|+=. |.--....||..|++. |...+..|..|+++++..... . . .....
T Consensus 39 ~vlvWFRrDLRl~DN~AL~~A~~~----------a~~~~~pVl~vfildp~~~~~-~--~---------------~~~r~ 90 (506)
T 3umv_A 39 PVVYWMLRDQRLADNWALLHAAGL----------AAASASPLAVAFALFPRPFLL-S--A---------------RRRQL 90 (506)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH----------HHHHTCCEEEEEECCCTTCGG-G--C---------------CHHHH
T ss_pred EEEEEeCCCcchhhcHHHHHHHHh----------hhhcCCCEEEEEeccchhhcc-C--C---------------CHHHH
Confidence 455544 4445566788888887 554477899999998752110 0 0 01222
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh--cCCCcEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH--HAVCPIII 188 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~--~~~~pVli 188 (197)
.-..+-|..+.+.+++.|+. ..++.|++.+. .+++++.+++.|+.-. ......+..-..+.+ .+. ...+++..
T Consensus 91 ~FL~~sL~dL~~~L~~lG~~--L~v~~G~p~~v-~~L~~~~~a~~V~~d~-ep~~~~r~rD~~V~~-~l~~~~~gi~~~~ 165 (506)
T 3umv_A 91 GFLLRGLRRLAADAAARHLP--FFLFTGGPAEI-PALVQRLGASTLVADF-SPLRPVREALDAVVG-DLRREAPGVAVHQ 165 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--EEEESSCTTHH-HHHHHHTTCSEEEECC-CCCHHHHHHHHHHHH-HHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCc--eEEEecChHHH-HHHHHhcCCCEEEecc-ChhHHHHHHHHHHHH-HHhhccCCeEEEE
Confidence 34445555666666666654 45678999999 9999999999999732 222221111123333 333 55788877
Q ss_pred ECC
Q 046290 189 VKP 191 (197)
Q Consensus 189 v~~ 191 (197)
+..
T Consensus 166 ~~~ 168 (506)
T 3umv_A 166 VDA 168 (506)
T ss_dssp ECC
T ss_pred eCC
Confidence 653
No 48
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=89.09 E-value=0.8 Score=35.30 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCc--EEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHH
Q 046290 40 ESAESFNALKWALDNLYGIVGFTPEAGGGGG--ILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALL 117 (197)
Q Consensus 40 ~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~--~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (197)
.++.+..++..|.++ +.. +. +++++.+-+.. .++.+
T Consensus 38 lnp~d~~Ale~A~~L----------ke~-g~~~~V~av~~G~~~-------------------------------a~~~l 75 (255)
T 1efv_B 38 MNPFCEIAVEEAVRL----------KEK-KLVKEVIAVSCGPAQ-------------------------------CQETI 75 (255)
T ss_dssp ECHHHHHHHHHHHHH----------HHT-TSCSEEEEEEEESTT-------------------------------HHHHH
T ss_pred CCHHHHHHHHHHHHH----------Hhc-CCCceEEEEEeCChh-------------------------------HHHHH
Confidence 358889999999999 554 55 89988775431 12222
Q ss_pred HHHHHHhHhcCCceEEEEe-c-----C-C---hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290 118 SRALQMCKDKMVKAESLVL-E-----G-D---PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI 186 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~-~-----g-~---~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV 186 (197)
..+. ..|.+--.++. . + + .++.|...+++.++|+|++|.+...+.. +.+...+...++.|.
T Consensus 76 r~al----a~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~~~~ 146 (255)
T 1efv_B 76 RTAL----AMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLDWPQ 146 (255)
T ss_dssp HHHH----HHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHTCCE
T ss_pred HHHH----hcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhCCCc
Confidence 2221 22554434443 1 2 2 4567888888889999999987754332 333444444444443
No 49
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=88.48 E-value=2.8 Score=35.12 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.4
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
..++|+|++.+...|..++.++.+. +.+++.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~--------------G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK--------------GAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT--------------TCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc--------------CCEEEEEEEEcC
Confidence 3578999999999999999888776 789999998654
No 50
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=88.27 E-value=2.9 Score=30.69 Aligned_cols=38 Identities=16% Similarity=0.005 Sum_probs=29.4
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+.+++|+|++.+...|..++..+... +.++.++|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~~--------------g~~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKKL--------------GYNPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHHT--------------TEEEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHHc--------------CCCeEEEEEeCC
Confidence 44689999999999998888766555 678999998544
No 51
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=88.22 E-value=5.6 Score=33.95 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=80.4
Q ss_pred cEEEEEeC--CCHHHHHHHHHHHHhcccccCCCCCCCC--CCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290 32 MKVMVAID--ESAESFNALKWALDNLYGIVGFTPEAGG--GGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 32 ~~Ilv~vd--~s~~s~~al~~a~~l~~~~~~~~~~A~~--~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (197)
..+|+=+- .--....||..|+.. +.. .+..|..|+++++........+ .
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~----------~~~~~~~~pv~~vfi~dp~~~~~~~~~-----------------~ 81 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTA----------ANAAPGRYFVRPIFILDPGILDWMQVG-----------------A 81 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHH----------HHHSTTTEEEEEEEEECTTGGGCTTSC-----------------H
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHh----------CccccCCCeEEEEEEECchhhcccCCC-----------------H
Confidence 34466553 345567788888877 432 3566999999988542111110 2
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
....-..+.+..+.+.+++.|+.. .++.|++.+.|.+++++.+++.|+.-.. ...... -.-....+.+....|++.
T Consensus 82 ~r~~Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~-~rd~~v~~~~~~~gi~~~ 157 (543)
T 2wq7_A 82 NRWRFLQQTLEDLDNQLRKLNSRL--FVVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSV-TRDAAVQKLAKAEGVRVE 157 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHH-HHHHHHHHHHHHcCCEEE
Confidence 222344455666666777777655 4457999999999999999999988643 233322 122333455566678887
Q ss_pred EECC
Q 046290 188 IVKP 191 (197)
Q Consensus 188 iv~~ 191 (197)
.+..
T Consensus 158 ~~~~ 161 (543)
T 2wq7_A 158 THCS 161 (543)
T ss_dssp EECC
T ss_pred EecC
Confidence 7765
No 52
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=88.00 E-value=2 Score=34.23 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=57.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
+.+++|++.++..|...+..+..++ ...+.++.++|+...... .
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~----------~~~~~~i~vv~vDtg~~~-----------------------~--- 89 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAF----------FPGKLPFPVMHVDTRWKF-----------------------Q--- 89 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHH----------TTSCCSSCEEEECCSCCC-----------------------H---
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhc----------cccCCCEEEEEEECCCCC-----------------------H---
Confidence 4589999999999999999998883 223456788888443210 0
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-----CC-h-------------hhHHHHHHHHcCCCEEEEccCCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-----GD-P-------------KDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-----g~-~-------------~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
+.++...+.++..|+++...... |. . .+.+.+++++.++|.++.|.+..
T Consensus 90 ----et~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 90 ----EMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp ----HHHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred ----HHHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 11223334456667766543211 21 0 12466667778999999998753
No 53
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=87.94 E-value=4.8 Score=32.71 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=30.2
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+.++|+|++.+...|..++..+.+. +-++..+|+...
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~--------------G~~V~~v~~~~~ 44 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ--------------GYDVIGIFMKNW 44 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT--------------TCEEEEEEEECC
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc--------------CCcEEEEEEECC
Confidence 3569999999999999888777666 678999988543
No 54
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=87.36 E-value=3.3 Score=30.31 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=27.4
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+||++++.++..+..+.+..-.+ .+. +.+++++..
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L----------~~~-g~~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVL----------EEL-DFSVDLVIS 36 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHH----------HHT-TCEEEEEEC
T ss_pred CEEEEEEECHHHHHHHHHHHHHH----------HHC-CCEEEEEEC
Confidence 68999999998888888877777 333 778888754
No 55
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=87.21 E-value=2.8 Score=34.75 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=59.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCC-CCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGG-GGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~-~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (197)
..+|+|++.++..|..++..+..+ .+. .+.++.++||......
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~----------~~~~~g~~v~avhvdhglr~-------------------------- 56 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQW----------RTENPGVALRAIHVHHGLSA-------------------------- 56 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHH----------HTTSTTCEEEEEEECCSCCS--------------------------
T ss_pred CCEEEEEEcchHHHHHHHHHHHHH----------HHhcCCCeEEEEEEECCCCc--------------------------
Confidence 468999999999999999988887 444 5789999999543210
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEec----C-Ch---h-----hHHHHHHHHcCCCEEEEccCC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLE----G-DP---K-----DMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~----g-~~---~-----~~I~~~a~~~~~dllVlG~~~ 162 (197)
...+..+.+.+.|+..|+++...-.. | ++ + ..+.+.++ +++.|+.|.+.
T Consensus 57 --~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 57 --NADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp --SHHHHHHHHHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred --ccHHHHHHHHHHHHHcCCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 12223445667777788876654332 2 11 1 12222333 48899998764
No 56
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=86.93 E-value=5 Score=33.09 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=30.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++|+|++.+...|..++.++.+. +.+++.+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~--------------G~eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ--------------GYDVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT--------------TEEEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc--------------CCEEEEEEEECC
Confidence 578999999999999988887665 678999998544
No 57
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=86.33 E-value=3.5 Score=30.77 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=57.9
Q ss_pred ccEEEEEeCC-----CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHH
Q 046290 31 KMKVMVAIDE-----SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESV 105 (197)
Q Consensus 31 ~~~Ilv~vd~-----s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (197)
|+.|||-++- .+.+..++..|.++ |...+.+++++-+-+...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~L----------a~~~g~~v~av~~G~~~~----------------------- 49 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSL----------ANELNCQLEAVVAGTGLK----------------------- 49 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHH----------HHHHTCCEEEEEEESCCT-----------------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHH----------HHhcCCeEEEEEECCCHH-----------------------
Confidence 4568888874 47789999999999 777788898887744311
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCceEEEEec----C-C---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 106 RKSQEENSAALLSRALQMCKDKMVKAESLVLE----G-D---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~----g-~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
. ..+.+..+|.+--+.+-. + + .++.|.+.+++.++|+|++|...
T Consensus 50 ---------~----~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 50 ---------E----IEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ---------T----THHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ---------H----HHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 111223346644343432 1 2 46788899999999999999753
No 58
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=85.89 E-value=7.9 Score=31.86 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHH
Q 046290 42 AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRAL 121 (197)
Q Consensus 42 ~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (197)
-....||..|+.. + +|..|++.++.... . ......-..+.+..+.
T Consensus 14 l~Dn~aL~~A~~~--------------~-~v~~vfi~d~~~~~-------------------~-~~~r~~fl~~sL~~l~ 58 (420)
T 2j07_A 14 LHDHPALLEALAR--------------G-PVVGLVVLDPNNLK-------------------T-TPRRRAWFLENVRALR 58 (420)
T ss_dssp STTCHHHHHHHTT--------------S-CEEEEEEECHHHHS-------------------S-CHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhC--------------C-CEEEEEEECCcccc-------------------C-CHHHHHHHHHHHHHHH
Confidence 4445667766655 3 78899998874311 0 1223334455666666
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+.+++.|+.. .+..|++.+.|.+++++.+++.|+.-.. ........-.. |...+.|++..+..
T Consensus 59 ~~L~~~g~~l--~~~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd~~----v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 59 EAYRARGGAL--WVLEGLPWEKVPEAARRLKAKAVYALTS-HTPYGRYRDGR----VREALPVPLHLLPA 121 (420)
T ss_dssp HHHHHTTCCE--EEEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHHHH----HHHHCSSCEEEECC
T ss_pred HHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-cChhHHHHHHH----HHHHcCCeEEEeCC
Confidence 7777777755 4567999999999999999999998543 23333222222 32223788877754
No 59
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=85.31 E-value=13 Score=31.22 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRA 120 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (197)
--....||..|+.. ...|..|+++++........ ......-..+.+..+
T Consensus 14 Rl~Dn~aL~~A~~~--------------~~~v~~vfi~dp~~~~~~~~-----------------~~~r~~fl~~sL~~L 62 (484)
T 1owl_A 14 RLSDNIGLAAARAQ--------------SAQLIGLFCLDPQILQSADM-----------------APARVAYLQGCLQEL 62 (484)
T ss_dssp CSSSCHHHHHHHHH--------------CSCEEEEEEECHHHHTCTTC-----------------CHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHhc--------------CCCEEEEEEEcchhhcCCCC-----------------CHHHHHHHHHHHHHH
Confidence 34456778888876 23788999988743210000 022223444555666
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.+++.|+.. .++.|++.+.|.+++++.+++.|+.-.. ........ -....+.+....|++..+..
T Consensus 63 ~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 63 QQRYQQAGSRL--LLLQGDPQHLIPQLAQQLQAEAVYWNQD-IEPYGRDR-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHHHHHTSCE--EEEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHH-HHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-CChhHHHH-HHHHHHHHHHcCcEEEEecC
Confidence 66666667655 4467999999999999999999988543 33333222 23334455666788877754
No 60
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=85.29 E-value=6.8 Score=32.39 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.|.++|+|++.+.-.|..++.++.+. |.+++.+++...
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~--------------G~eViavt~d~G 49 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK--------------GFDVIAYVANVG 49 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT--------------TCEEEEEEEESS
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC--------------CCeEEEEEEEcC
Confidence 35679999999999999988888777 789999888543
No 61
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=84.36 E-value=7.1 Score=29.62 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=54.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcc-cccccCCcCcccccChhhHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQR-FVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
++++|.+++...|..++-.+... +-++..++...+... .....
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~--------------G~eV~~L~~~~~~~~~s~~~h---------------------- 48 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN--------------RFSVKFLVTMVSENEESYMYH---------------------- 48 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT--------------TCEEEEEEEEECC------------------------------
T ss_pred CEEEEEecCcHHHHHHHHHHHHc--------------CCeEEEEEEEcCCCCCccccC----------------------
Confidence 58999999999999888777666 677776654333210 00000
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEecCC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLEGD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...++.+...++..|++....-..|. ..+.+.+..++.+++.+|.|.--
T Consensus 49 ---~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 49 ---TINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp ---CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---
T ss_pred ---CccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 01112234455666787765555553 46677777777789999999754
No 62
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=82.94 E-value=12 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=29.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+++++|++.+...|..++.++.+. +.+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~--------------~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD--------------YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH--------------CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc--------------CCCEEEEEEECC
Confidence 358999999999999998888777 458888888543
No 63
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=82.22 E-value=13 Score=27.60 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=27.6
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+.+.+.|+.+...-...-..+.+.+..++.++|++|+....
T Consensus 52 ~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 52 LIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 45667788764321111123788899999999999998764
No 64
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=82.03 E-value=3.6 Score=26.65 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCC----CCchhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRG----LGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~----~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
...+.|.+++++++++.||+|-.- ..+......-..++++-.. +.||..+-...+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 357889999999999999999531 1111111223445666666 899998876543
No 65
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=82.00 E-value=22 Score=29.83 Aligned_cols=128 Identities=16% Similarity=0.013 Sum_probs=76.7
Q ss_pred EEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCccccccc-CCcCcccccChhhHHHHHHHH
Q 046290 33 KVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPA-LSTSSAFYATSSMVESVRKSQ 109 (197)
Q Consensus 33 ~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (197)
.+|+=+ |.--....||..|+.. +..+..|++.++........ ... .....
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~~--------------~~~v~~vfi~dp~~~~~~~~~~~~-------------~~~~r 59 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALKS--------------GLAITAVYCYDPRQFAQTHQGFAK-------------TGPWR 59 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT--------------TSEEEEEEEECGGGGSBCTTSCBS-------------SCHHH
T ss_pred cEEEEeCCCCCcchHHHHHHHHhc--------------CCCEEEEEEECchhhcccccccCC-------------CCHHH
Confidence 455555 3345566778888776 56788999988753221000 000 00122
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..-..+.+..+.+.+++.|+.. .++.|++.+.|.+++++.+++.|+.-.. ........- ....+.+....|++..+
T Consensus 60 ~~Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd-~~v~~~l~~~gi~~~~~ 135 (489)
T 1np7_A 60 SNFLQQSVQNLAESLQKVGNKL--LVTTGLPEQVIPQIAKQINAKTIYYHRE-VTQEELDVE-RNLVKQLTILGIEAKGY 135 (489)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCE--EEEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHHH-HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCcE--EEEECCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHHH-HHHHHHHHhcCCeEEEe
Confidence 2344455666666677777655 4567999999999999999999888643 333332222 22334445557887776
Q ss_pred CC
Q 046290 190 KP 191 (197)
Q Consensus 190 ~~ 191 (197)
..
T Consensus 136 ~~ 137 (489)
T 1np7_A 136 WG 137 (489)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 66
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=81.95 E-value=7.2 Score=32.27 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhH---HHHHHHHcCC-CEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDM---ICQSAEQMHI-DLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~---I~~~a~~~~~-dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+++...++..|+.++..+..- ...+. +.+.++..++ ++||.++...+.+... +...+++||+-||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv--------va~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV--------MSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH--------HHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH--------HhccCCCCEEEee
Confidence 34556666777889888887764 33344 4444555667 6888887665555432 4557799999999
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 75
No 67
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=80.25 E-value=19 Score=29.21 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
.+.++|+|++.+...|..++..+.+. +-++..+|+...... . ....
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~--------------G~~V~~v~~~~~~~~----------------~-~~~~--- 60 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ--------------GYQVEGLFMKNWEED----------------D-GEEY--- 60 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT--------------CCEEEEEEEECCCCC----------------S-HHHH---
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHc--------------CCeEEEEEEEcCccc----------------c-ccCC---
Confidence 34679999999999988877665554 778999988532210 0 0000
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEec-----------------CC------------hhhHHHHHHHH-cCCCEEEE
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLE-----------------GD------------PKDMICQSAEQ-MHIDLLVV 158 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-----------------g~------------~~~~I~~~a~~-~~~dllVl 158 (197)
-...+..+.+...|+..|++....-.. |. -...+.++|.+ .++|.|+.
T Consensus 61 --~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~Iat 138 (380)
T 2der_A 61 --CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIAT 138 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEEC
T ss_pred --CCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 011233455666667777766544332 10 12456677887 89999999
Q ss_pred ccCC
Q 046290 159 GSRG 162 (197)
Q Consensus 159 G~~~ 162 (197)
|...
T Consensus 139 GH~a 142 (380)
T 2der_A 139 GHYV 142 (380)
T ss_dssp CCSC
T ss_pred cccc
Confidence 9753
No 68
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=79.89 E-value=20 Score=28.08 Aligned_cols=120 Identities=8% Similarity=0.099 Sum_probs=76.1
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
-+|||++.........++++..+- ...+-++++++.+..... .+.+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt-----------~~~G~ltv~~i~p~~~~~-----------------------~l~~ 66 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDIT-----------YPKGSVKLLGLAGNTDKE-----------------------NLLS 66 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-----------TTTCEEEEEECC---CTT-----------------------CHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhc-----------cCceeEEEEEEccCCCcc-----------------------HHHH
Confidence 379999988878899999999993 235789999997554210 0011
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcC-----CCEEEEccCCCCchhhhhccchhHHHhhcCCCc
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMH-----IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCP 185 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~-----~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~p 185 (197)
+ ++.+.+.++.+++..-..+... ++...+...++.++ ...|+||...... .+--+..+..+ +++...-
T Consensus 67 q----l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~~y~~~i~~-~~~~~~n 140 (294)
T 3g40_A 67 Q----LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDEEIREIIRK-ASMYRMG 140 (294)
T ss_dssp H----HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHHHHHHHHHH-HHHTTCE
T ss_pred H----HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhHHHHHHHHH-HHHhCce
Confidence 1 2455667788888877777654 88888888877765 6789998765332 21123344443 3355888
Q ss_pred EEEECC
Q 046290 186 IIIVKP 191 (197)
Q Consensus 186 Vliv~~ 191 (197)
|++.+.
T Consensus 141 Vlil~~ 146 (294)
T 3g40_A 141 VLLFSK 146 (294)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998864
No 69
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=79.06 E-value=18 Score=29.95 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRA 120 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (197)
--....||..|++. +.+|..|++.++........ .......-..+.+..+
T Consensus 12 Rl~DN~aL~~A~~~--------------~~~v~~vfi~dp~~~~~~~~----------------~~~~r~~Fl~~sL~~L 61 (440)
T 2e0i_A 12 RLEDNTGLNYALSE--------------CDRVIPVFIADPRQLINNPY----------------KSEFAVSFMINSLLEL 61 (440)
T ss_dssp CSSSCHHHHHHHHH--------------SSEEEEEEEECHHHHSSCTT----------------CCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhc--------------CCCEEEEEEeChhhhccCCc----------------CCHHHHHHHHHHHHHH
Confidence 34445778888887 67899999988742110000 0022233445556666
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.+++.|+.. .+..|++.+.|.++++ +++.|+.-.. ........ -....+.+....|++..+..
T Consensus 62 ~~~L~~~G~~L--~v~~g~~~~~l~~l~~--~~~~v~~~~~-~~~~~~~r-d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 62 DDELRKKGSRL--NVFFGEAEKVVSRFFN--KVDAIYVNED-YTPFSISR-DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp HHHHHTTTCCC--EEEESCHHHHHHHHCT--TCSEEEEECC-CSHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHcCCeE--EEEECCHHHHHHHHHc--CCCEEEEecc-cChHHHHH-HHHHHHHHHHcCceEEEecC
Confidence 66777777655 4457999999999999 9999888543 33333222 23334455666788877764
No 70
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=78.82 E-value=29 Score=29.38 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=78.2
Q ss_pred cEEEEEeC--CCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCccccccc--CCcCcccccChhhHHHHHH
Q 046290 32 MKVMVAID--ESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPA--LSTSSAFYATSSMVESVRK 107 (197)
Q Consensus 32 ~~Ilv~vd--~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 107 (197)
+.+|+=+- .--....||..|+.. +..|..|+++++........ ... ...
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~--------------~~~v~~vfi~dp~~~~~~~~~~~~~-------------~~~ 92 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS--------------SDTILPVYCLDPRLFHTTHFFNFPK-------------TGA 92 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT--------------CSEEEEEEEECGGGGSBCTTTCCBS-------------SCH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc--------------CCcEEEEEEECchhhcccccccCCC-------------CCH
Confidence 45566664 345567788888777 45799999998753211000 000 002
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC--Cc
Q 046290 108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV--CP 185 (197)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~--~p 185 (197)
....-..+.+..+.+.+++.|+.. .++.|++.+.|.+++++.+++.|+.-.. ........-..+ .+.+.... |+
T Consensus 93 ~r~~Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~rd~~v-~~~l~~~gv~i~ 168 (525)
T 2j4d_A 93 LRGGFLMECLVDLRKNLMKRGLNL--LIRSGKPEEILPSLAKDFGARTVFAHKE-TCSEEVDVERLV-NQGLKRVGNSTK 168 (525)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHHHHTCSEEEEECC-CSHHHHHHHHHH-HHHHHTTCSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-CCHHHHHHHHHH-HHHHHhcCCceE
Confidence 222344455666666677777765 4457999999999999999999998643 333333332333 33445555 78
Q ss_pred EEEECC
Q 046290 186 IIIVKP 191 (197)
Q Consensus 186 Vliv~~ 191 (197)
+..+..
T Consensus 169 ~~~~~~ 174 (525)
T 2j4d_A 169 LELIWG 174 (525)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 877654
No 71
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=78.65 E-value=21 Score=30.06 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=29.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.+...|..++..+.+. +.+++.+|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~--------------g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA--------------GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH--------------TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc--------------CCeEEEEEEeCC
Confidence 68999999999999888877666 679999998543
No 72
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=77.76 E-value=9.9 Score=31.81 Aligned_cols=100 Identities=12% Similarity=-0.046 Sum_probs=59.1
Q ss_pred EEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEe--cCChhhHHHHHH
Q 046290 71 ILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVL--EGDPKDMICQSA 148 (197)
Q Consensus 71 ~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~--~g~~~~~I~~~a 148 (197)
+|..|++.++....... .......-..+.+..+.+.+++.|+....... .|++.+.|.+++
T Consensus 29 ~v~~vfi~dp~~~~~~~-----------------~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~ 91 (471)
T 1dnp_A 29 RVLALYIATPRQWATHN-----------------MSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVC 91 (471)
T ss_dssp EEEEEEEECHHHHHHTT-----------------CCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEEEECchhhccCC-----------------CCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHH
Confidence 89999998874210000 01223334455666666777777876644322 689999999999
Q ss_pred HHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 149 EQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 149 ~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
++.+++.|+.-.. ........-..+ .+.+.. |++..+..
T Consensus 92 ~~~~~~~v~~~~~-~~~~~~~rd~~v-~~~l~~--i~~~~~~~ 130 (471)
T 1dnp_A 92 AENSVTHLFYNYQ-YEVNERARDVEV-ERALRN--VVCEGFDD 130 (471)
T ss_dssp HHHTCCEEEEECC-CSHHHHHHHHHH-HHHCTT--SEEEEECC
T ss_pred HHcCCCEEEEecc-cCchHHHHHHHH-HHHhcC--cEEEEecC
Confidence 9999999988543 333332222222 222322 77766654
No 73
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=77.62 E-value=19 Score=26.71 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHhHhcCCceEEEEec--C---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 121 LQMCKDKMVKAESLVLE--G---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~--g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+.|+.+...-.. . ...+++.+..++.++|++|+...+
T Consensus 53 ~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 53 AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 45667778876543211 1 124678899999999999998765
No 74
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=77.61 E-value=20 Score=27.24 Aligned_cols=39 Identities=0% Similarity=-0.113 Sum_probs=30.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
+.+++|++.++..|...+..+..+ ... +..+.++|+...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~----------~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKL----------SEK-YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHH----------TTT-SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHh----------Ccc-CCCeeEEEecCC
Confidence 457999999999999999999888 332 357888888443
No 75
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=76.68 E-value=9.4 Score=32.60 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=73.8
Q ss_pred ccEEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290 31 KMKVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 31 ~~~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
.+.+||=. |.--....||..|+.. +..|..|+|.++......+.. ...+.. . .-..
T Consensus 4 ~~~~lvWFRrDLRl~DN~AL~~A~~~--------------~~~vlpvfi~dp~~~~~~~~~-~~~g~~---~----~g~~ 61 (537)
T 3fy4_A 4 GSGSLIWFRKGLRVHDNPALEYASKG--------------SEFMYPVFVIDPHYMESDPSA-FSPGSS---R----AGVN 61 (537)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHTT--------------CSCEEEEEEECHHHHSCCTTS-SSSBCS---S----CBHH
T ss_pred CCcEEEEeCCCcccchhHHHHHHHhc--------------CCCEEEEEEeChhhhcccccc-cccccc---c----CCHH
Confidence 34455554 4445566777777765 568999999986431100000 000000 0 0012
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
...-..+.|..+.+.+++.|+.. .++.|++.+.|.+++++.+++.|+.-.. ........ -....+.+....+++..
T Consensus 62 r~~Fl~~sL~~L~~~L~~~G~~L--~v~~G~~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~R-D~~v~~~l~~~gI~~~~ 137 (537)
T 3fy4_A 62 RIRFLLESLKDLDSSLKKLGSRL--LVFKGEPGEVLVRCLQEWKVKRLCFEYD-TDPYYQAL-DVKVKDYASSTGVEVFS 137 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHTTSCEEEEEECCC-CSHHHHHH-HHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCce--EEEECCHHHHHHHHHHHcCCCEEEEecc-ccHHHHHH-HHHHHHHHHHcCCeEEE
Confidence 22344445556666666666544 4567999999999999999999988643 23322211 22233445555666554
Q ss_pred EC
Q 046290 189 VK 190 (197)
Q Consensus 189 v~ 190 (197)
+.
T Consensus 138 ~~ 139 (537)
T 3fy4_A 138 PV 139 (537)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 76
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=76.36 E-value=19 Score=27.21 Aligned_cols=34 Identities=3% Similarity=-0.040 Sum_probs=28.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
.+|+|++.++..|..++..+..+ +.++.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~--------------~~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQI--------------RPDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHH--------------STTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHh--------------CCCCeEEEecC
Confidence 47999999999999999988888 34677888744
No 77
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=75.73 E-value=4 Score=28.25 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHcCCCEEEEccC----CCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSR----GLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~----~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
...+.|.+++++++++.||+|-. |..+.........++++-...++||..+-..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 34789999999999999999953 2222222223345555655568999988653
No 78
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=75.43 E-value=18 Score=29.52 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.+...|..++.++.+.+ +.++..+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~-------------g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY-------------RAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH-------------TCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh-------------CCcEEEEEEeCC
Confidence 379999999999999888887652 568889988544
No 79
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=75.16 E-value=6.1 Score=33.75 Aligned_cols=117 Identities=14% Similarity=0.017 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRA 120 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (197)
--....||..|+.. +. .+..|..|+|.++........+ .....-..+.|..+
T Consensus 15 Rl~DN~AL~~A~~~----------~~-~g~~vl~vfi~dp~~~~~~~~~-----------------~~r~~Fl~~sL~~L 66 (538)
T 3tvs_A 15 RLHDNPALLAALAD----------KD-QGIALIPVFIFDGESAGTKNVG-----------------YNRMRFLLDSLQDI 66 (538)
T ss_dssp CSSSCHHHHTTTGG----------GT-TTCBCCEEEEECSSSSCSTTCC-----------------HHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHh----------CC-CCCCEEEEEecChhhhccCCCC-----------------HHHHHHHHHHHHHH
Confidence 34445667666665 43 4558999999987542110000 12223444556666
Q ss_pred HHHhHhc---CCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDK---MVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~---~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.+.+++. |+.. .++.|++.+.|.+++++.+++.|+.-. ........ .-....+.+....+++..+
T Consensus 67 ~~~L~~~~~~G~~L--~v~~G~~~~vl~~L~~~~~a~~V~~n~-~~~~~~~~-RD~~v~~~l~~~gi~~~~~ 134 (538)
T 3tvs_A 67 DDQLQAATDGRGRL--LVFEGEPAYIFRRLHEQVRLHRICIEQ-DCEPIWNE-RDESIRSLCRELNIDFVEK 134 (538)
T ss_dssp HHHGGGSCSSSSCC--EEEESCHHHHHHHHHHHHCEEEECEEC-CCCGGGHH-HHHHHHHHHHHSSCCCCEE
T ss_pred HHHHHHhhcCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEcc-CCCHHHHH-HHHHHHHHHHhCCceEEEe
Confidence 6667766 6544 556799999999999999999998743 33332221 1122233444455555444
No 80
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=74.98 E-value=37 Score=28.58 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=74.8
Q ss_pred EEEEEe--CCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 33 KVMVAI--DESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 33 ~Ilv~v--d~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
++|+=+ |.--....||..|+.. + .+..|+++++....... .. ....
T Consensus 13 ~~l~WfrrDLRl~DN~aL~~A~~~--------------~-~v~pvfi~dp~~~~~~~--~~---------------~~~~ 60 (509)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRA--------------G-PVIALFVWAPEEEGHYH--PG---------------RVSR 60 (509)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH--------------S-CEEEEEEECGGGGTTCC--CC---------------HHHH
T ss_pred cEEEEECCCCccchhHHHHHHHhC--------------C-CEEEEEEECchhcccCC--cc---------------hHHH
Confidence 345545 4445567788888877 3 46788888875321100 00 1111
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.-..+.+..+.+.+++.|+.. .++. |++.+.|.+++++.+++.|+.... ........ -....+.+....|++..+
T Consensus 61 ~fl~~sL~~L~~~L~~~G~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~gi~~~~~ 136 (509)
T 1u3d_A 61 WWLKNSLAQLDSSLRSLGTCL--ITKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLVR-DHRAKDVLTAQGIAVRSF 136 (509)
T ss_dssp HHHHHHHHHHHHHHHHTTCCE--EEEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHHH-HHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeE--EEEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcCcEEEEE
Confidence 134556666777777778765 3444 699999999999999999988643 23322222 223344556678888777
Q ss_pred CC
Q 046290 190 KP 191 (197)
Q Consensus 190 ~~ 191 (197)
..
T Consensus 137 ~~ 138 (509)
T 1u3d_A 137 NA 138 (509)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 81
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=73.11 E-value=26 Score=25.97 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
|+||.|-+.++-.+..++-.+..- ...++++.+|-. ....
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-----------~~l~~eI~~Vis--n~~~--------------------------- 41 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-----------GQLPCEVALLIT--DKPG--------------------------- 41 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-----------TCCSSEEEEEEE--SCSS---------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-----------CCCCcEEEEEEE--CCCC---------------------------
Confidence 468999999987777777777654 233566666544 3210
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+.+.+.|+.+...-.. .+ ....+.+..++.++|++|+...+
T Consensus 42 -------a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 -------AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp -------SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred -------cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 02455667778876432111 11 24688899999999999998765
No 82
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=72.06 E-value=6.4 Score=25.92 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=38.0
Q ss_pred HHHHHHHhHhcCCceEEEEe-cCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 117 LSRALQMCKDKMVKAESLVL-EGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+..+.+++.|++++..-. .+...+.+ + ++|+|++|-+=+..+.. .++......+||.++++
T Consensus 23 v~km~~~a~~~gi~v~i~a~~~~~~~~~~----~--~~DvvLLgPQV~y~~~~------ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 23 ANAINEGANLTEVRVIANSGAYGAHYDIM----G--VYDLIILAPQVRSYYRE------MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHHTCSEEEEEEETTSCTTTG----G--GCSEEEECGGGGGGHHH------HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHHCCCceEEEEcchHHHHhhc----c--CCCEEEEChHHHHHHHH------HHHHhhhcCCcEEEeCH
Confidence 34445555667787765433 34433322 3 68999999765443332 24455666899999875
No 83
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=70.86 E-value=4.3 Score=28.43 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHcCCCEEEEccC----CCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSR----GLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~----~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
...+.|.+++++++++.||+|-. +.........-..+..+....++||..|....
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 56889999999999999999943 11111111112334455555689999987644
No 84
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=70.27 E-value=35 Score=26.74 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=51.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
++||.|-+.++-.+..+|-.+..- ...++++.+| +.....
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-----------g~l~~~I~~V--isn~~~--------------------------- 144 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-----------DELDCDIACV--ISNHQD--------------------------- 144 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-----------TCSCSEEEEE--EESSST---------------------------
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-----------CCCCcEEEEE--EECcHH---------------------------
Confidence 568888888887777776666554 2234555544 433220
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+...+...|+++...-.. .+ ....+.+..++.++|++|+....
T Consensus 145 ---------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ---------LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ---------THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ---------HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 112356678876442111 11 24678999999999999998764
No 85
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=66.95 E-value=12 Score=28.48 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=35.0
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+++.+++++.|++|+.+....... ..-+++++....+|.+|+.+.
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEEG
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcCC
Confidence 34455568999999999887654322 356788999999999999643
No 86
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=66.69 E-value=18 Score=28.37 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=55.8
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhccccc-------CCCCCC--CCCCcEEEEEEeecCCcccccccCCcCcccccChhhH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIV-------GFTPEA--GGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMV 102 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~-------~~~~~A--~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (197)
.+|+|++.++..|..++..+...+.... ++ +.+ ...+..+.++|+......
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~i~vv~iDtg~~f------------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQF-DFEFQSFPMQRLPTVFIDQEETF------------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCCEEEEECCCTTCC-------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccc-cccccccCCCCeeEEEEeCCCCC-------------------
Confidence 4799999999999998888776531100 00 000 011456888888543210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEe----cCChhhHHHHHHHHc-CCCEEEEccCCCC
Q 046290 103 ESVRKSQEENSAALLSRALQMCKDKMVKAESLVL----EGDPKDMICQSAEQM-HIDLLVVGSRGLG 164 (197)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~----~g~~~~~I~~~a~~~-~~dllVlG~~~~~ 164 (197)
. +.++-..+.++..|+++..... .....+.+.++++.. ..+.+++|.+..-
T Consensus 114 ----p-------et~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 114 ----P-------TLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp ----H-------HHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred ----H-------HHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 1 1111122333445665532211 124566777777663 6789999987543
No 87
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=65.84 E-value=6.9 Score=29.07 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=29.3
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.++|++++.++..+-.+.+..-.+ .+ .+.+++++..
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L----------~~-~g~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCL----------VQ-EEREVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHH----------HH-TTCEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHH----------HH-CCCEEEEEEC
Confidence 4689999999999988888877777 22 2788888755
No 88
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=65.78 E-value=6.7 Score=28.42 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=29.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
|++||++++.++..+.++.+..-.+ .+. +.+++++..
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L----------~~~-g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVEL----------KQH-FDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHH----------TTT-SSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHH----------HHC-CCEEEEEEc
Confidence 3678999999999988888888887 433 778888754
No 89
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=65.76 E-value=24 Score=22.82 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 119 RALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
++.+.+++.|++++.....- +..+ .. .++|+|+.+..-.....+ .++.....++||+++++
T Consensus 23 kl~~~~~~~gi~~~i~~~~~~~~~~----~~--~~~D~Ii~t~~l~~~~~~------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 23 RIEKYAKSKNINATIEAIAETRLSE----VV--DRFDVVLLAPQSRFNKKR------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHTCSEEEEEECSTTHHH----HT--TTCSEEEECSCCSSHHHH------HHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHCCCCeEEEEecHHHHHh----hc--CCCCEEEECCccHHHHHH------HHHHhcccCCCEEEECh
Confidence 44555566777766544332 3332 23 379999998754332221 12233344678888765
No 90
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=65.76 E-value=33 Score=26.79 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=28.4
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.++..|..++..+.+.+ +.+++.+|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~-------------g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI-------------GDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh-------------CCCEEEEEEcCC
Confidence 579999999999988887776652 567889988543
No 91
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=65.37 E-value=29 Score=23.52 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=42.6
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC--CCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA--VCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~--~~pVliv 189 (197)
...++..|.++.. +-...+.+.+.+.+++.++|+|.+.+....... .+..+.+.+-... +++|++=
T Consensus 24 ~~~l~~~G~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 24 DHAFTNAGFNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHTTCEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 3455667766632 223467899999999999999999887644333 2455666554432 3677664
No 92
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=64.34 E-value=57 Score=26.58 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=29.7
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
.++++|++.++..|..++..+... +.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~--------------G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKR--------------GVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHB--------------TEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHHc--------------CCcEEEEEEeC
Confidence 578999999999999888877766 78999999864
No 93
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=63.58 E-value=43 Score=24.93 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHH---HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAE---QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~---~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+.+.+.+.+...+..+..++..+.+...-+ ..++|+||-. |.++..|-++.+.||+-++..
T Consensus 28 ~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 28 FRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCC
Confidence 333444445556677777877666654433 2357755432 667777778889999988754
No 94
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=63.39 E-value=29 Score=24.29 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC--CCcEEEE
Q 046290 122 QMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA--VCPIIIV 189 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~--~~pVliv 189 (197)
..+...|.++ .... ..+.+.+.+.+++.++|+|.+.+....... .+..+.+.+-... +++|++=
T Consensus 40 ~~l~~~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 40 RALRDAGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHTTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHCCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEe
Confidence 3455566554 2222 257899999999999999999886544333 2345555554432 3777764
No 95
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=62.21 E-value=44 Score=24.59 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=52.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|-+.++.....++-.++.- ...+.++.+| +...... .
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~~-----------~~l~~~I~~V--isn~~~a----------------~--------- 48 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQA-----------PGFPAEIVAV--FSDKAEA----------------G--------- 48 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHTS-----------TTCSEEEEEE--EESCTTC----------------T---------
T ss_pred CccEEEEEECCcHHHHHHHHHHHc-----------CCCCcEEEEE--EECCccc----------------H---------
Confidence 568999999987777666666533 2234455544 4332100 0
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
..+.+++.|+.+...-.. .+ ..+.+.+..++.++|++|+...+
T Consensus 49 ---------~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 49 ---------GLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp ---------HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred ---------HHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 024567778876432211 11 24788999999999999998754
No 96
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=62.11 E-value=53 Score=25.39 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 56 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 56 EKVIEFAVKRAAG-RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444444444432 24443333233555554 5678889999998887654332221112333567778899999985
No 97
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=61.64 E-value=56 Score=25.56 Aligned_cols=75 Identities=13% Similarity=-0.019 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-. +..+.| .+.+++.++|-+.+-.........--+-..-+.|...++.||++..
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 68 KQVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3344444444432 3555444545 665554 6678899999999987654433221122333567778899999986
No 98
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=60.84 E-value=53 Score=25.34 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 56 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 56 EQVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3344444444432 24444434333555554 6678899999998887654332221112233467778899999975
No 99
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=60.66 E-value=45 Score=24.12 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred EEEEecCChhhHHHHHHH-HcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 132 ESLVLEGDPKDMICQSAE-QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 132 ~~~~~~g~~~~~I~~~a~-~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+..+..++..+.+...-+ ..++|+||-. |.++..|-++.+.||+-++..
T Consensus 30 ~i~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 30 IPITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred ceEEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 344566776555544322 4677854432 667777778889999988754
No 100
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=60.13 E-value=42 Score=26.77 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecCCh----hhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDP----KDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+++...++..|+.+...+..|++ .+.+.+.+++.++|+|| +|... . ..++..+.....+|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs---v-----~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK---T-----LDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH---H-----HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH---H-----HHHHHHHHHhcCCCEEEec
Confidence 4555666666677776544556653 45677778888999988 55311 1 1222222233469999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
...
T Consensus 118 TTa 120 (370)
T 1jq5_A 118 TAA 120 (370)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 101
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=60.12 E-value=55 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+.+-.........--+-..-+.|...++.||++..
T Consensus 56 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 56 KKVIEKVVDVVNG-RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344444444433 24443333233555554 5678889999998887654432221122333567778899999975
No 102
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=59.66 E-value=49 Score=25.52 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..-
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 57 ADVVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444433 24443333333555554 56688889999988776543322211223335677788999999863
No 103
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=59.64 E-value=63 Score=25.51 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+.+-.........--+-..-+.|...++.||++..-
T Consensus 90 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 90 RRAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344444444432 24444434333555554 56788899999999876544322211123335677788999999863
No 104
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=59.64 E-value=12 Score=31.68 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.6
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.+...|..++..+.+.+ +.+++.+|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~-------------G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI-------------GDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH-------------GGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh-------------CCeEEEEEeccC
Confidence 689999999999988887776642 568999998443
No 105
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=59.28 E-value=60 Score=25.14 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=51.5
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|-+.++-.+..+|-++..- ...++++.+| +.....
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-----------g~l~~~i~~V--isn~~~--------------------------- 129 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-----------GQLGMDVVAV--VSNHPD--------------------------- 129 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-----------TSSCCEEEEE--EESSST---------------------------
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-----------CCCCcEEEEE--EeCcHH---------------------------
Confidence 568999888887777777766554 2234555544 444320
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+...+...|+.+...-.. .+ ....+.+..++.++|++|+....
T Consensus 130 ---------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ---------LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ---------THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---------HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 112356678876542111 11 24578899999999999998764
No 106
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=59.05 E-value=30 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=28.4
Q ss_pred HHHHHHHHhHhcCCceEEEEecCC-hhhHHHHHHHHcCCCEEEEccCCCCc
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGD-PKDMICQSAEQMHIDLLVVGSRGLGK 165 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllVlG~~~~~~ 165 (197)
..+.+.+.+.+.|++++..-.... ....+..... ++|.||+|+.-..+
T Consensus 21 iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 21 LAQAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTTS
T ss_pred HHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCCC
Confidence 333344444556776655444433 3455555555 79999999976543
No 107
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=58.13 E-value=38 Score=26.58 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHh-hcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCA-HHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll-~~~~~pVliv~~~ 192 (197)
..+++...+...|+++....... +.+..+.+.+...++|+||+.. |-+ .+..+++.++ ....+|+.++|-.
T Consensus 43 ~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDG-----Tv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 43 ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDG-----TLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHH-----HHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-Cch-----HHHHHHHHHHhCCCCCcEEEecCC
Confidence 44556666677777666544433 3444555555445788777642 212 2234555553 2457999999854
No 108
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.06 E-value=9.7 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEc
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVG 159 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG 159 (197)
+.+++...+..|.++.+.-......+.|-+..++.++.++|+-
T Consensus 15 lrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvv 57 (134)
T 2l69_A 15 LRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVV 57 (134)
T ss_dssp HHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3344444444454443321112334444444454454444443
No 109
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=57.83 E-value=65 Score=25.05 Aligned_cols=83 Identities=7% Similarity=0.053 Sum_probs=52.8
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|-+.++-.+..+|-++..- ...++++.+ |+.....
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-----------g~l~~~i~~--Visn~~~--------------------------- 134 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-----------GELKMDIVG--IVSNHPD--------------------------- 134 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-----------TSSCCEEEE--EEESSST---------------------------
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-----------CCCCcEEEE--EEeCcHH---------------------------
Confidence 568999999887787777777665 223455544 4444321
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec-CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE-GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+...+...|+.+...-.. .+ ....+.+..++.++|++|+....
T Consensus 135 ---------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 ---------FAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ---------THHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---------HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 012356678876542111 12 24578899999999999998765
No 110
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=57.21 E-value=55 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHhHhcCCceEEEEecCC------hhhHHHHHHHHcCCCEEEEccCC
Q 046290 121 LQMCKDKMVKAESLVLEGD------PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~------~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+.|+.+.. +...+ ..+.+.+..++.++|++|+...+
T Consensus 44 ~~~A~~~gIp~~~-~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVECKV-IQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCCEEE-CCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEE-eCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 4556677887643 11222 24678888899999999997654
No 111
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=57.01 E-value=72 Score=25.33 Aligned_cols=76 Identities=20% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 87 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 87 KAIARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344444444432 24443333333555554 6678889999998877654332221112333567778899999975
No 112
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=56.84 E-value=66 Score=24.88 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+.+-.........--+-..-+.|...++.||++..
T Consensus 56 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 56 KRVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444444444433 24444433333555554 5678889999999987654432221122333567778899999975
No 113
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=56.70 E-value=32 Score=23.79 Aligned_cols=46 Identities=11% Similarity=-0.015 Sum_probs=26.9
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
.+.+.+.+...|++++..-........+..... ++|.||+|+.-..
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 18 SQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 333444445567776554444433444544444 7899999997654
No 114
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=56.69 E-value=68 Score=24.98 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=27.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
.++++|.+.+ ..|..++-.+.+. |.+++.+|..
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~~--------------G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMKR--------------GVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHHB--------------TCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHHHHHhC--------------CCeEEEEEEE
Confidence 4689999999 9888777666666 8999999986
No 115
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=56.58 E-value=49 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=39.9
Q ss_pred HHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh-cCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH-HAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~-~~~~pVliv~~~ 192 (197)
.++++...+...+++++...... +-+..+.+.+.+ ++|+||+.. |.+. +..+++.+.. ..++|+.++|-.
T Consensus 27 ~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGT-----l~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 27 NLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGT-----VFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHH-----HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchH-----HHHHHHHHhhCCCCCcEEEecCC
Confidence 33445556666777776655443 445555555543 788777642 2122 2344454544 357899999853
No 116
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=56.22 E-value=72 Score=25.12 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=36.0
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC---CCchhhhhccc-hhHHHhhcCCCcEEEECC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG---LGKIKRAFLGS-VSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~---~~~~~~~~~gs-~~~~ll~~~~~pVliv~~ 191 (197)
.+.+.|+++.. +..+.+. .+. + ++|.+++|+.+ .++.-+. .|. ...-+.++..+||+|+-+
T Consensus 167 ~L~~~gI~vtl-i~Dsa~~-~~m---~--~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 167 ALCHLNVPVTV-VLDAAVG-YIM---E--KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHTTTCCEEE-ECGGGHH-HHG---G--GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHcCCCEEE-EehhHHH-HHH---H--hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhCCCEEEEec
Confidence 34456887743 3333222 222 2 79999999975 2333332 344 334457777899999954
No 117
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=55.41 E-value=67 Score=24.51 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=35.9
Q ss_pred hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
.+.|.+..++.+.|+|+.-............+..+....+....|++..
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 4556778889999999996555556666666777777777777777765
No 118
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=55.28 E-value=57 Score=25.16 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 60 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 60 KEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3344444444432 24443333233555544 6678889999998887654332221112333456777789999975
No 119
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=55.15 E-value=72 Score=24.77 Aligned_cols=75 Identities=19% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 73 ~v~~~~~~~~~g-rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 149 (304)
T 3cpr_A 73 ELLKAVREEVGD-RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYD 149 (304)
T ss_dssp HHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444444432 24443333233555554 6678889999998877654332221112333567778899999975
No 120
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=54.75 E-value=73 Score=24.70 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+.++.+.+.+.. .+.+-.-+-..+..+. +.+.+++.++|-+++..........--+-..-+.|...++.||++..-
T Consensus 61 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (300)
T 3eb2_A 61 AVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTN 138 (300)
T ss_dssp HHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 344444444432 3455444444455444 456788889999999876544332211223446678888999999864
No 121
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=54.68 E-value=52 Score=25.39 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 57 ~~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 57 KETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444444444433 24443333333555544 6678889999998887654332221111222345667789999975
No 122
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=54.51 E-value=73 Score=24.68 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 68 ~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 68 VALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344444444432 24443333333555554 6678889999998887654432221112333567778899999975
No 123
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=54.43 E-value=63 Score=23.88 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=52.6
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHH
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQE 110 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (197)
.+||.|-+.++-....++-.++.- . .+.++.+| +......
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~----------~--~~~eI~~V--is~~~~a-------------------------- 44 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQK----------G--LAIEIRAV--ISNRADA-------------------------- 44 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHT----------T--CSEEEEEE--EESCTTC--------------------------
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHc----------C--CCCEEEEE--EeCCcch--------------------------
Confidence 568999999988877777767654 1 34555544 4332100
Q ss_pred HHHHHHHHHHHHHhHhcCCceEEEEec--C---ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 111 ENSAALLSRALQMCKDKMVKAESLVLE--G---DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 111 ~~~~~~l~~~~~~~~~~~v~~~~~~~~--g---~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
. ..+.+.+.|+.+...-.. . ...+++.+..++.++|++|+...+
T Consensus 45 -~-------~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 45 -Y-------GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp -H-------HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred -H-------HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 0 024566778876432111 1 124678999999999999997654
No 124
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=54.13 E-value=48 Score=24.00 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=41.3
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC---CCcEEEECC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA---VCPIIIVKP 191 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~---~~pVliv~~ 191 (197)
..+...|.++.. +-...+.+.+.+.+++.++|+|.+.......... +..+.+.+-... ++||++--+
T Consensus 110 ~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 110 MMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEECC
Confidence 344556665532 2234578999999999999999998754333322 334445444332 288887644
No 125
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=53.61 E-value=77 Score=24.64 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 68 EKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444444432 24443333333555554 6678889999998887654432221122333567778899999975
No 126
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=53.43 E-value=21 Score=25.65 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=28.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.+||++++.++..+.++++..-.+ .+ .+.+++++..
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L----------~~-~g~~V~vv~T 40 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIEL----------KS-KFDEVNVIAS 40 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHH----------TT-TCSEEEEEEC
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHH----------HH-CCCEEEEEEC
Confidence 3579999999999988888877777 33 3788887754
No 127
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=52.87 E-value=18 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=29.2
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.++|++++.++..+.++.+..-.+ .+ .+.+++++..
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L----------~~-~g~~V~vv~T 43 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYF----------KS-FFKEIRVVMT 43 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHH----------TT-TSSEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHH----------HH-CCCEEEEEEc
Confidence 3579999999999888888877777 33 3788888754
No 128
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=52.15 E-value=80 Score=24.43 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+....+.+-..+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++.||++..
T Consensus 63 ~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (301)
T 3m5v_A 63 RTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYN 141 (301)
T ss_dssp HHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444445554443124443333323454444 5678889999999987654433222122334567778899999985
No 129
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=52.07 E-value=68 Score=24.19 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=42.2
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKP 191 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~ 191 (197)
..+...|.++.. +-..-+.+.+.+.+++.++|+|.+.+........ +..+.+.+-.. .++||++--.
T Consensus 145 ~~L~~~G~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG~ 212 (258)
T 2i2x_B 145 ALLRANGYNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGGG 212 (258)
T ss_dssp HHHHHTTCEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEEST
T ss_pred HHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEECc
Confidence 345566766533 2234688999999999999999998764433322 23444444333 3488887643
No 130
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=51.98 E-value=72 Score=24.95 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh---cCCCcEEEECCC
Q 046290 118 SRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH---HAVCPIIIVKPP 192 (197)
Q Consensus 118 ~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~---~~~~pVliv~~~ 192 (197)
.++...+.+.|+++....... +-+..+.+.+...++|+||+.. |-+ .+..+++.+.. ...+|+.++|-.
T Consensus 47 ~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G-GDG-----Tl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG-GDG-----TINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE-SHH-----HHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc-cch-----HHHHHHHHHhhcccCCCCeEEEecCc
Confidence 345556677777776554432 3344444444445788776642 211 23455566654 457899998853
No 131
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=51.97 E-value=75 Score=24.66 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCC-CcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV-CPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~-~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+.| .+.+++.++|-+++-.........--+-..-+.|...++ .||++..
T Consensus 67 ~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 67 EQVLEIVAEEAKG-KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3344444444432 24443333222555554 567888999999887765433222111233345677778 9999975
No 132
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=51.77 E-value=46 Score=21.58 Aligned_cols=64 Identities=6% Similarity=-0.000 Sum_probs=34.1
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPK 193 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~ 193 (197)
+...|..+. ...+..+.+....+...+|+|++...-..+..++ ...+.+-..-.+||+++-...
T Consensus 25 L~~~g~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 25 LNKYGYTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHTTCEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHcCCEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 344455432 2345555554444437899999987642212221 223334344569999886543
No 133
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=51.75 E-value=78 Score=24.16 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=65.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
..=|++.+-......++..+++ |+..|..|=.-=-+++...+ ... . .....+++...
T Consensus 30 SANIACGfHAGDp~~M~~tv~l----------A~~~gV~IGAHPgypDl~GF-GRR-----------~-m~~s~~el~~~ 86 (255)
T 1v6t_A 30 SANVACGWHAGDPLVMRKTVRL----------AKENDVQVGAHPGYPDLMGF-GRR-----------Y-MKLTPEEARNY 86 (255)
T ss_dssp EEEEECSSSSCCHHHHHHHHHH----------HHHTTCEEEEECCCSCTTTT-TCS-----------C-CCCCHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHH----------HHHcCCeEecCCCCCcccCC-CCC-----------C-CCCCHHHHHHH
Confidence 4455665555555566667777 55557665432222322211 000 0 01123555666
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
....+-.+...++..|.++...--+| ..++.|.+.+...+.+|+++|..+
T Consensus 87 v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (255)
T 1v6t_A 87 ILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN 146 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 66677778888999998886654454 357999999999999999999543
No 134
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=51.58 E-value=89 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=35.6
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccchh-HHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSVS-DYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~~-~~ll~~~~~pVliv~~ 191 (197)
+.+.|+++.. +..+-+...+ .++|.|++|+.+- +..-+. +|... --+.++.++|++|+-+
T Consensus 188 L~~~GI~vtl-I~Dsa~~~~M------~~Vd~VivGAd~V~anG~v~NK-iGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 188 LASYGIPVIY-VVDSAARHYM------KMTDKVVMGADSITVNGAVINK-IGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHTTCCEEE-ECGGGTTTTG------GGCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCEEEEECC
T ss_pred HHhCCCCEEE-EehHHHHHHH------HhCCEEEECccEEecCCCEeec-ccHHHHHHHHHHcCCCEEEecc
Confidence 4456888754 4343333322 4799999999752 222222 34433 3346677899999854
No 135
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=48.26 E-value=56 Score=25.33 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=49.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCC-cccccccCCcCcccccChhhHHHHHHH
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPF-QRFVLPALSTSSAFYATSSMVESVRKS 108 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (197)
.++||.|-+.++-.+..+|-++.+- ...+++ +..|+... ..
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-----------g~l~~~--i~~Visn~p~~------------------------- 129 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-----------GDLHMI--PTAIVSNHPRE------------------------- 129 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-----------TSSCEE--EEEEEESSCGG-------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-----------CCCCeE--EEEEEcCCChh-------------------------
Confidence 3668988888887777777777654 222344 44455443 21
Q ss_pred HHHHHHHHHHHHHHHhHhcCCceEEEEec-CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 109 QEENSAALLSRALQMCKDKMVKAESLVLE-GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+...++..|+.+...-.. .+ ....+.+..++.++|++|+....
T Consensus 130 -----------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 130 -----------TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp -----------GSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred -----------HHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 112245567765432111 11 23568888888899999997654
No 136
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=48.08 E-value=63 Score=24.80 Aligned_cols=64 Identities=6% Similarity=-0.031 Sum_probs=40.9
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
|..+.+.+++.|+.+-+.+.+-.-.+.+ .+ .+|++=+|+..-.... ..+++ ..+++||++=++.
T Consensus 64 L~~l~~~~~e~Glp~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G~ 127 (267)
T 2nwr_A 64 VKALRKVKEEFGLKITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKGQ 127 (267)
T ss_dssp HHHHHHHHHHHCCEEEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECCT
T ss_pred HHHHHHHHHhcCCeEEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCCC
Confidence 4445666788899887766554433333 32 5899999986544332 33444 3678999887664
No 137
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=47.80 E-value=75 Score=24.17 Aligned_cols=122 Identities=12% Similarity=0.006 Sum_probs=71.9
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
..=|++.+-......++..+++ |+..|..|=.-=-+++...+ ... . .....+++...
T Consensus 30 SANIACGfHAGDp~~M~~tv~l----------A~~~gV~IGAHPgypDl~GF-GRR-----------~-m~~s~~el~~~ 86 (250)
T 2dfa_A 30 SANLACGFHGGSPGRILEAVRL----------AKAHGVAVGAHPGFPDLVGF-GRR-----------E-MALSPEEVYAD 86 (250)
T ss_dssp EEEEECSSSSCCHHHHHHHHHH----------HHHTTCEEEEECCCSCTTTT-TCS-----------C-CCCCHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHH----------HHHcCCeEecCCCCCcccCC-CCC-----------C-CCCCHHHHHHH
Confidence 4455665555555566667777 55557665432222322211 000 0 01123555566
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA 182 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~ 182 (197)
....+-.+...++..|.++...--+| ..++.|.+.+...+.+|+++|..+ |...+..+..
T Consensus 87 v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~~~~A~~~ 156 (250)
T 2dfa_A 87 VLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPG----------TVYEEEARKA 156 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTT----------SHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHHHHHHHHc
Confidence 66677778888888888775543343 357999999999999999999443 3334455555
Q ss_pred CCcEE
Q 046290 183 VCPII 187 (197)
Q Consensus 183 ~~pVl 187 (197)
..|++
T Consensus 157 Gl~~~ 161 (250)
T 2dfa_A 157 GLRVV 161 (250)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 55554
No 138
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=47.27 E-value=92 Score=23.71 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhH
Q 046290 107 KSQEENSAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSD 176 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~ 176 (197)
+++.......+-.+..+++..|.++...--+| ..++.|.+.+...+.+|+++|..+ |...
T Consensus 76 ~el~~~v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~~ 145 (252)
T 1xw8_A 76 ETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG----------SELI 145 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT----------SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHHH
Confidence 55566666677778888999998886654443 357999999999999999999543 3334
Q ss_pred HHhhcCCCcEE
Q 046290 177 YCAHHAVCPII 187 (197)
Q Consensus 177 ~ll~~~~~pVl 187 (197)
+..+....|++
T Consensus 146 ~~A~~~Gl~~~ 156 (252)
T 1xw8_A 146 RAGKQYGLTTR 156 (252)
T ss_dssp HHHHHTTCCEE
T ss_pred HHHHHcCCcEE
Confidence 45555555554
No 139
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=47.00 E-value=79 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=23.5
Q ss_pred cEEEEEeCCCHH----------HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAE----------SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~----------s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..+.|.+|.++. .....+++..+ ++.++..+..+.+
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~i----------vd~l~~~v~~~Kv 68 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTV----------VEALGEHVAVFKP 68 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHH----------HHHHTTTCSEEEE
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHH----------HHHhCCcceEEEe
Confidence 468899998876 34456777777 4444555555544
No 140
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=46.44 E-value=88 Score=23.25 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC--Chh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG--DPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g--~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..++.+.+.+++.|.++......+ +.. ...++.....++|-||+.......+. ...+.+ . ..+||+++-
T Consensus 22 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~~-~-~~iPvV~~~ 94 (304)
T 3o1i_D 22 SVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-----HNLKSW-V-GNTPVFATV 94 (304)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-----TTHHHH-T-TTSCEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHHHH-c-CCCCEEEec
Confidence 344445555566677776655554 533 34455555679999998765433222 223333 4 789999983
No 141
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=46.43 E-value=95 Score=23.78 Aligned_cols=52 Identities=6% Similarity=0.032 Sum_probs=34.0
Q ss_pred ChhhH--HHHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEEC
Q 046290 139 DPKDM--ICQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 139 ~~~~~--I~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+..+. +.+.+++.++|-+++-...... ...--+-..-+.|...++.||++..
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 129 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYN 129 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45544 4667888999999998765544 2221112333567778899999985
No 142
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.66 E-value=1e+02 Score=23.70 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+.+..........--+-..-+.|...++.||++..
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3tak_A 57 TQVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYN 134 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445555555543 24443433333555444 5678889999999887654433221122334567778899999985
No 143
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=45.20 E-value=42 Score=26.13 Aligned_cols=47 Identities=6% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEE-ECC
Q 046290 144 ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII-VKP 191 (197)
Q Consensus 144 I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli-v~~ 191 (197)
+++.+.+.+.|.|++|+.+-+.+... +..+...+-+..+.||++ .||
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fPP 105 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFPP 105 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECCC
Confidence 56666677899999994444433332 345666666668999999 883
No 144
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=44.97 E-value=41 Score=24.67 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhHhcCCc-eEEEEecCChhhHHHHHHHHcCCCEEEEccCC-CCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 112 NSAALLSRALQMCKDKMVK-AESLVLEGDPKDMICQSAEQMHIDLLVVGSRG-LGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~-~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++.++.+.+.+++.|++ +-.-...|..+....+.. .+..+|+++.+. ......+-+..-..+-+.....+|+.-
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEEC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEE
Confidence 3455666667777776764 222233466777777765 368999998653 233333445566666677777777765
Q ss_pred CC
Q 046290 190 KP 191 (197)
Q Consensus 190 ~~ 191 (197)
..
T Consensus 105 tH 106 (201)
T 1vp8_A 105 SH 106 (201)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 145
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.93 E-value=60 Score=23.84 Aligned_cols=66 Identities=5% Similarity=-0.076 Sum_probs=40.3
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEE--ccCCCCchhhhhccchhHHHhhcC---CCcEEEEC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVV--GSRGLGKIKRAFLGSVSDYCAHHA---VCPIIIVK 190 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVl--G~~~~~~~~~~~~gs~~~~ll~~~---~~pVliv~ 190 (197)
..+...|.++.. +-..-+.+.|++.+++.++|+|.+ .+.-..... .+..+.+.+-... ++||++--
T Consensus 114 ~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 114 TMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEEC
Confidence 344566665522 223368999999999999999999 543222221 2345555554443 47877753
No 146
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=43.81 E-value=98 Score=23.56 Aligned_cols=106 Identities=9% Similarity=0.013 Sum_probs=64.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHH
Q 046290 33 KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEEN 112 (197)
Q Consensus 33 ~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (197)
..=|++.+-......++..+++ |+..+..|=.-=-+++...+ ... . .....+++...
T Consensus 36 SANIACGfHAGDp~~M~~Tv~l----------A~~~gV~IGAHPgypDl~GF-GRR-----------~-m~~s~~el~~~ 92 (252)
T 2x5e_A 36 QANLACGFHAGDPLTMRRAVEL----------AVRHGVSIGAHPAYPDLSGF-GRR-----------S-LACSAEEVHAM 92 (252)
T ss_dssp EEEEECSSSSCCHHHHHHHHHH----------HHHTTCEEEEECCCSCTTTT-TCS-----------C-CCCCHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHH----------HHHcCCeeecCCCCCcccCC-CCC-----------C-CCCCHHHHHHH
Confidence 4455665555555566667777 55557665432223322211 100 0 01123555566
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEecC----------ChhhHHHHHHHHcCCCEEEEccC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLEG----------DPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
....+-.+..+++..|.++...--+| ..++.|.+.+...+.+|+++|..
T Consensus 93 v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 93 VLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 66677778888898888876544443 35799999999999999999954
No 147
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=43.63 E-value=76 Score=23.21 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 046290 45 FNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMC 124 (197)
Q Consensus 45 ~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (197)
...++.++++ |+..|++..++|.-.... .. ....+...+...+.+.++.+.+
T Consensus 75 ~~~~~~~i~~----------A~~lGa~~v~~~~g~~~~-----------------~~-~~~~~~~~~~~~~~l~~l~~~a 126 (254)
T 3ayv_A 75 LRRLLFGLDR----------AAELGADRAVFHSGIPHG-----------------RT-PEEALERALPLAEALGLVVRRA 126 (254)
T ss_dssp HHHHHHHHHH----------HHHTTCSEEEEECCCCTT-----------------CC-HHHHHHTHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHH----------HHHhCCCEEEECCCCCcc-----------------cc-cccHHHHHHHHHHHHHHHHHHH
Confidence 3456666666 666799888887532211 00 0012233345566667777777
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMH 152 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~ 152 (197)
++.|+.+-.+...+...+.+.++++..+
T Consensus 127 ~~~gv~l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 127 RTLGVRLLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp HHHTCEEEEECSSCSSGGGTHHHHHHHT
T ss_pred hhcCCEEEEcCCCCCCHHHHHHHHHhcC
Confidence 7788877665555544555666666444
No 148
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=43.56 E-value=35 Score=26.84 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=42.2
Q ss_pred HHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 122 QMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
+.+++.+.-+-..-..+ +...++++.|++.+..+|+--+.+........+......+..+.++||.+-
T Consensus 20 ~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 20 TFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 33444444444334444 789999999999999999876654222211112234455677889999763
No 149
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=43.37 E-value=1.2e+02 Score=23.74 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+. +.+.+++.++|-+++..........--+-..-+.|...++.||++..
T Consensus 80 ~~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 80 DEVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3444444444443 2445443333355444 45568889999999987654433222222344567778899999985
No 150
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=43.07 E-value=1.1e+02 Score=23.52 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.... .+.+-..+-..+..+. +.+.+++.++|-+++..........--+-..-+.|...++.||++..
T Consensus 63 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 140 (297)
T 3flu_A 63 TAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYN 140 (297)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444444444443 2444443333355444 45678889999999887654433221112334667778899999985
No 151
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=43.03 E-value=87 Score=24.14 Aligned_cols=75 Identities=13% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcC---CCcEEE
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHA---VCPIII 188 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~---~~pVli 188 (197)
+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+++....... ...--+-..-+.|...+ +.||++
T Consensus 60 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 60 AILSSFIAAGIA-PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp HHHHHHHHTTCC-GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 344444443332 24454444443555554 667888999999998765444 22211123335677777 899999
Q ss_pred EC
Q 046290 189 VK 190 (197)
Q Consensus 189 v~ 190 (197)
..
T Consensus 139 Yn 140 (294)
T 3b4u_A 139 YN 140 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 152
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=42.34 E-value=65 Score=25.02 Aligned_cols=59 Identities=7% Similarity=-0.077 Sum_probs=33.6
Q ss_pred HHHhHhcCC-ceEEEEecC---ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc
Q 046290 121 LQMCKDKMV-KAESLVLEG---DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH 181 (197)
Q Consensus 121 ~~~~~~~~v-~~~~~~~~g---~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~ 181 (197)
.+.+...|+ .++...+.. -....+.+..+ ++|.|.++--....+.+.+.++-...++++
T Consensus 77 ~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~ 139 (291)
T 3en0_A 77 QTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIRQ 139 (291)
T ss_dssp HHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHHH
Confidence 444555576 444433321 22356677777 899999987655455555555555555443
No 153
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=41.79 E-value=1.2e+02 Score=23.58 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+. +.+.+++.++|-+.+..........--+-..-+.|...++.||++..-
T Consensus 79 ~~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 79 IQVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444443 2444333333345444 456788899999999876544332211223345677788999999853
No 154
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=41.63 E-value=43 Score=26.68 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC-CC-chhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG-LG-KIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~-~~-~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+....++..+ ++|+||+|-.+ .+ -+..++..-+.+. +.++++|++.|.+-
T Consensus 167 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 167 PMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNV 218 (332)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 3567888888 89999999765 23 3334445555555 67789999998764
No 155
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=41.62 E-value=53 Score=26.36 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=44.2
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-----------hhccchhHHHhhcCCCcEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-----------AFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-----------~~~gs~~~~ll~~~~~pVl 187 (197)
+.+.+++.+.-+-..-..+ +...++++.|++.+..+|+-.+.+...... ..+......+..+.++||.
T Consensus 12 ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVa 91 (349)
T 3elf_A 12 MLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVA 91 (349)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred HHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 4444455554444444444 789999999999999999876643211100 1123445667888899997
Q ss_pred EE
Q 046290 188 IV 189 (197)
Q Consensus 188 iv 189 (197)
+-
T Consensus 92 LH 93 (349)
T 3elf_A 92 LH 93 (349)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 156
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=41.24 E-value=44 Score=25.31 Aligned_cols=44 Identities=11% Similarity=-0.021 Sum_probs=27.4
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEcc
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~ 160 (197)
.++++++...+.|.++...+--|--.+.+.. +.+.++|.+|+|+
T Consensus 181 KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~-~~~aGAD~~V~GS 224 (246)
T 3inp_A 181 KAKEISKWISSTDRDILLEIDGGVNPYNIAE-IAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHHTSCCEEEEESSCCTTTHHH-HHTTTCCEEEESH
T ss_pred HHHHHHHHHHhcCCCeeEEEECCcCHHHHHH-HHHcCCCEEEEeh
Confidence 3555666666666666655544522344444 4555899999996
No 157
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=40.51 E-value=1.3e+02 Score=23.36 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-..+-..+..+. +.+.+++.++|-+++..........--+-..-+.|...++.||++..
T Consensus 71 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 148 (304)
T 3l21_A 71 IELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYD 148 (304)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344444444432 2444333333355444 45678889999999987654433222122334667888899999985
No 158
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=40.42 E-value=1e+02 Score=24.15 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHhHhcCCceEEEEecCCh-hhHHHHHHHHcCCCEEEEccCC
Q 046290 120 ALQMCKDKMVKAESLVLEGDP-KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~-~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+.+.+.+.|+.+.. ..+. ..++.+..++.++|++|+-..+
T Consensus 55 v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 55 VKTLALEHNVPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHTTCCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHcCCCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 45566777887632 2222 2578888899999999997765
No 159
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=40.35 E-value=38 Score=24.73 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=28.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+||++++.++..+.++.+..-.+ .+..+.+++++..
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L----------~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQAL----------REMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHH----------HTCTTCEEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHH----------HhccCCEEEEEEC
Confidence 37999999998888888887777 4433788888754
No 160
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=40.27 E-value=81 Score=24.40 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=17.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHh
Q 046290 31 KMKVMVAIDESAESFNALKWALDN 54 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l 54 (197)
++||.|-+.++-.+..++-.+..-
T Consensus 88 ~~ri~vl~Sg~g~nl~~ll~~~~~ 111 (287)
T 3nrb_A 88 RKKVVIMVSKFDHCLGDLLYRHRL 111 (287)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCcCHHHHHHHHHC
Confidence 567888888877777666666654
No 161
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=40.05 E-value=1.1e+02 Score=22.60 Aligned_cols=71 Identities=11% Similarity=-0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+..+.+.+.+.|..+......++.. ..+++.....++|-||+...... . . .-+.+....+||+++-..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~-~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--H-----D-YLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--C-----H-HHHHSSCTTSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--h-----H-HHHHhhccCCCEEEEecc
Confidence 445555666677787776554444543 34666667779999998654321 1 1 122345668999998654
Q ss_pred C
Q 046290 193 K 193 (197)
Q Consensus 193 ~ 193 (197)
.
T Consensus 97 ~ 97 (291)
T 3egc_A 97 L 97 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 162
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=39.95 E-value=1.1e+02 Score=22.40 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=51.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHH
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEE 111 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (197)
+||.|-+.++-.+..+|-.++.- ...+.++.+|-..++...
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-----------~~~~~~I~~Vvs~~~~~~---------------------------- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-----------PNSSAQIDIVISNKAAVA---------------------------- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-----------TTCSCEEEEEEESSTTCH----------------------------
T ss_pred CeEEEEEECCchHHHHHHHHHhc-----------CCCCcEEEEEEeCCCChH----------------------------
Confidence 37888888887777777655544 223456655544332110
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.++.+.+.|+.+...-.. .+ ..+.+.+..++.++|++|+...+
T Consensus 42 --------~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 --------GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp --------HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred --------HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 025567778876431111 11 23678888899999999998654
No 163
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=39.93 E-value=68 Score=20.08 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=34.1
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+...|..+. ...+.. ...+..+...+|+|++...-.+. .++ ...+.+-...++|++++-.
T Consensus 22 L~~~g~~v~---~~~~~~-~al~~~~~~~~dlii~D~~~p~~-~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 22 LRKEGYEVH---CAHDGN-EAVEMVEELQPDLILLDIMLPNK-DGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHTTCEEE---EESSHH-HHHHHHHTTCCSEEEEETTSTTT-HHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHhCCEEEE---EeCCHH-HHHHHHhhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCEEEEEC
Confidence 344455432 233444 44556677789999998764321 221 3344454555789988854
No 164
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=39.80 E-value=42 Score=26.81 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC-CC-chhhhhccchhHHHhhcCCCcEEEECC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG-LG-KIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~-~~-~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+....++..+ ++|+||+|-.+ .+ -+..++..-+.+. +.++++|++.|.+
T Consensus 178 a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 178 AVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 4566777777 89999999765 23 3444555555555 6778899998876
No 165
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=39.60 E-value=1.1e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=31.5
Q ss_pred ceEEEEecCChhhHHHHH--HHHcCCCEEEEccC-CCCchhhhhccch
Q 046290 130 KAESLVLEGDPKDMICQS--AEQMHIDLLVVGSR-GLGKIKRAFLGSV 174 (197)
Q Consensus 130 ~~~~~~~~g~~~~~I~~~--a~~~~~dllVlG~~-~~~~~~~~~~gs~ 174 (197)
-+.+.+..|++.+.|.++ |.++++|.|.+-++ +.|.+.....|.+
T Consensus 152 ~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT 199 (516)
T 1xrs_A 152 LLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGAT 199 (516)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCC
T ss_pred EEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCC
Confidence 345666689999999875 88899999876543 5555555555543
No 166
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=39.46 E-value=1.4e+02 Score=23.48 Aligned_cols=75 Identities=7% Similarity=-0.035 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC-cEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHHHHHHHHHHHHH
Q 046290 41 SAESFNALKWALDNLYGIVGFTPEAGGGG-GILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSR 119 (197)
Q Consensus 41 s~~s~~al~~a~~l~~~~~~~~~~A~~~~-~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (197)
++.+..++..|.++ +. .+ .+++++-+-+. . +.
T Consensus 15 ~~~~~eal~~A~~L----------~e-~g~~~V~av~~G~~-~-----------------------------------~~ 47 (320)
T 1o97_D 15 RPVSLELIGAANGL----------KK-SGEDKVVVAVIGSQ-A-----------------------------------DA 47 (320)
T ss_dssp CTHHHHHHHHHHHH----------CS-STTCEEEEEEESTT-G-----------------------------------GG
T ss_pred CHHHHHHHHHHHHH----------hh-CCCCcEEEEEECCc-H-----------------------------------HH
Confidence 47889999999999 76 55 58888866322 0 00
Q ss_pred HHHHhHhcCCceEEEEec---C----ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 120 ALQMCKDKMVKAESLVLE---G----DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~---g----~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+.+.+..+|.+--+.+.. + ..++.|.+.+++.++|+|++|...
T Consensus 48 ~~~~a~a~GaDkv~~v~d~~l~~~~~~~a~~La~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 48 FVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp GHHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHHHHHhcCCceEEEEeCcccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 111123345543333322 1 136778888888899999999854
No 167
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=39.43 E-value=1.2e+02 Score=22.76 Aligned_cols=71 Identities=10% Similarity=-0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.+..+.+.+.+.|..+......++..+ .+++.....++|-||+.......... .. +.+....+||+++-..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN-----VV-KEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH-----HH-HHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH-----HH-HHHHHCCCeEEEECCc
Confidence 444455556667777665544445433 45556666799999987654332221 12 2345678999998654
No 168
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=39.21 E-value=35 Score=25.07 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=28.4
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++++.++..+.++.+..-.| .+..+.+++++..
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L----------~~~~g~~V~vv~T 55 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKL----------LDIPGLEVAVVTT 55 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHH----------C---CEEEEEEEC
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHH----------hcccCCEEEEEEC
Confidence 3579999999999988888887777 4424778887754
No 169
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=39.09 E-value=1.3e+02 Score=23.27 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=53.3
Q ss_pred ccEEEEEeCCCHH------------HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccC
Q 046290 31 KMKVMVAIDESAE------------SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYAT 98 (197)
Q Consensus 31 ~~~Ilv~vd~s~~------------s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~ 98 (197)
...+.|.+|+++. .....+|...+ ++.++..+..+.+--..
T Consensus 17 ~s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~i----------vd~l~~~v~~~Kvg~~l----------------- 69 (290)
T 3r89_A 17 NGFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEI----------IDQTYDVCAIYKLQIAY----------------- 69 (290)
T ss_dssp HCSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHH----------HHHHTTSCSEEEEEHHH-----------------
T ss_pred CCCEEEEECCChhhCchhhccccchHHHHHHHHHHH----------HHHhCCcceEEEecHHH-----------------
Confidence 4468889998862 34556777777 44445555555542110
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHH-----cCCCEEEEcc
Q 046290 99 SSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQ-----MHIDLLVVGS 160 (197)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~-----~~~dllVlG~ 160 (197)
....-...-+.+++..+.+++.|..+-.....+|...+...+++. .++|++.+-.
T Consensus 70 -------f~~~G~~~v~~L~~~i~~~~~~g~~VflDlK~~DIpnTv~~~a~~~~~~~lg~D~vTvh~ 129 (290)
T 3r89_A 70 -------YESYGIEGMIAYRDTLSYLREKDLLSIGDVKRSDIAASAKMYAKAHFEGDFETDFITLNP 129 (290)
T ss_dssp -------HHTTHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHSGGGCCSEEEECC
T ss_pred -------HHhcCHHHHHHHHHHHHHHHHCCCeEEEEecccCcHHHHHHHHHHHhccccCCCEEEEcc
Confidence 011111222344445555555676666666677766665555533 5678877743
No 170
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=39.05 E-value=1.1e+02 Score=22.39 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...+..+.+.+.+.|..+......++.. ..+++.....++|-||+..... . .. -..+....+||+++..
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-----~~-~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P-----QT-VQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H-----HH-HHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H-----HH-HHHHHHCCCCEEEEec
Confidence 3455556666777787776554444543 3566666677999999876543 1 11 1235567899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 171
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.95 E-value=75 Score=20.27 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=26.8
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+...+..+...+|+|++...-.+....+ ...+.+-....+|++++-..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 3344555566899999987643111211 22333333356899988543
No 172
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=38.95 E-value=69 Score=19.87 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=25.9
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEE
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIV 189 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv 189 (197)
+...+..+...+|++++...-.+...++ ...+.+-.. ..+|++++
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 3334455666899999987533111111 234445443 46999998
No 173
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=38.69 E-value=68 Score=25.65 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=36.2
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC---Cchhhhhccch-hHHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL---GKIKRAFLGSV-SDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~---~~~~~~~~gs~-~~~ll~~~~~pVliv~~ 191 (197)
+.+.|+++.. +..+ ++....++..+|.|++|+.+- +..-+. +|.. .--+.++.++|++|+-+
T Consensus 204 L~~~GI~vtl-I~Ds----a~~~~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 204 LMKDGIEVYV-ITDN----MAGWLMKRGLIDAVVVGADRIALNGDTANK-IGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHTTTCEEEE-ECGG----GHHHHHHTTCCSEEEECCSEEETTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhCCCCEEE-Eehh----HHHHHhhcCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEecc
Confidence 4556777643 3222 333344445799999999752 222222 3443 33456677899999854
No 174
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=38.54 E-value=49 Score=26.21 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCC-C-chhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGL-G-KIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~-~-~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
+....++..+ ++|+||+|-.+. + -+..++..-+.+. +.++++|++.|.+-
T Consensus 168 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 168 PLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 4567888888 899999997652 3 3334455566665 67789999998764
No 175
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=38.50 E-value=43 Score=26.03 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=44.9
Q ss_pred HHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
.+.+++.+.-+-..-..+ +..+++++.|++.+..+|+-.+.+.....+ ..+......+..+.++||.+-
T Consensus 10 l~~A~~~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 10 LQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred HHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 333444444333333344 789999999999999999887765322111 234567777888899998764
No 176
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=38.44 E-value=80 Score=23.74 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 143 MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 143 ~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..++.+.+.+.|.|.+|-+..-...+ .-.+.+.+-+ .+.|+++.|..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~--~~~~v~~ik~-~~~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDN--VIHLMSKIRR-YPLPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHH--HHHHHHHHTT-SCSCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHH--HHHHHHHhcC-cCCCEEEecCC
Confidence 34555567789999999864333332 2345555555 78999999874
No 177
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=37.89 E-value=75 Score=20.01 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=32.0
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECCC
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKPP 192 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~~ 192 (197)
.+...|..+. . ..+. +...+..+...+|+|++...-... .+ -...+.+-... .+|++++-..
T Consensus 26 ~L~~~g~~v~--~-~~~~-~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 26 WFSSLGATTV--L-AADG-VDALELLGGFTPDLMICDIAMPRM-NG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHTTCEEE--E-ESCH-HHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHhCCceEE--E-eCCH-HHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 3344455432 2 3344 344455677789999998753221 11 12333443333 4899888654
No 178
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=37.85 E-value=60 Score=24.35 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+++...+.++|+|.+|-+........+ .+.+++-+ .+.|+++.+-.
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~ir~-~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKVSQ-YGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHHTT-SCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHhcC-CCCCEEEecCC
Confidence 45667777789999999975333333322 45555544 68999988754
No 179
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=37.73 E-value=1.3e+02 Score=22.56 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEe-cC---------ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVL-EG---------DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC 184 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~-~g---------~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~ 184 (197)
+.+.++.+.|...|+.+...+. .| +....+.+.+.+.++|.|.++.. .++ ....++...+++
T Consensus 132 ~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~i 203 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPA 203 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCC
Confidence 4555666777777776654431 11 11234457788889999988731 222 233556667789
Q ss_pred cEEEECCC
Q 046290 185 PIIIVKPP 192 (197)
Q Consensus 185 pVliv~~~ 192 (197)
||+....-
T Consensus 204 pvva~GGi 211 (273)
T 2qjg_A 204 PVVVAGGP 211 (273)
T ss_dssp CEEEECCS
T ss_pred CEEEEeCC
Confidence 99987643
No 180
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=37.58 E-value=1.2e+02 Score=22.32 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+..+.+.+.+.|..+......++..+ ..++.....++|-||+......... ... +-+....+||+++-..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 25 RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SAI-EEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HHH-HHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHH-HHHHHcCCCEEEecCC
Confidence 4455555666777877765544455433 4455555678999998654333221 112 2345568999999654
No 181
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=37.41 E-value=81 Score=24.22 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=34.1
Q ss_pred ChhhHH--HHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEEC
Q 046290 139 DPKDMI--CQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 139 ~~~~~I--~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+..+.| .+.+++.++|-+++-...... ...--+-..-+.|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 455554 667888999999998765443 2221112333567778899999975
No 182
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.90 E-value=1.3e+02 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHhHhcCCceEEEEecCC------hhhHHHHHHHHcCCCEEEEccCC
Q 046290 121 LQMCKDKMVKAESLVLEGD------PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~------~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+.|+.+.. +...+ ..+.+.+..++.++|++|+...+
T Consensus 65 ~~~A~~~gIp~~~-~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALH-MDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEE-CCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEE-ECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 4556777876643 11111 24678888999999999997654
No 183
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=36.41 E-value=86 Score=24.14 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=33.6
Q ss_pred ChhhHH--HHHHHHcCCCEEEEccCCCCc-hhhhhccchhHHHhhcCCCcEEEEC
Q 046290 139 DPKDMI--CQSAEQMHIDLLVVGSRGLGK-IKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 139 ~~~~~I--~~~a~~~~~dllVlG~~~~~~-~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+..+.| .+.+++.++|-+++-...... ...--+-..-+.|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 455554 566888899999888765443 2221112333567778899999975
No 184
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=36.16 E-value=54 Score=25.50 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCch-hh-hhccchhHHHhh--cCCCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKI-KR-AFLGSVSDYCAH--HAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~-~~-~~~gs~~~~ll~--~~~~pVliv 189 (197)
.+.+++.+.-+-..-..+ +..+++++.|++.+..+|+-.+.+.... .+ ..+......+.. +.++||.+-
T Consensus 13 l~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 13 LNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 333444444343333444 7899999999999999998776542222 11 134566677788 889998763
No 185
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=36.13 E-value=79 Score=23.53 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=25.2
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEc-cC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVG-SR 161 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG-~~ 161 (197)
++++++...+.|.++...+--|--.+.+...++ .++|.+|+| +.
T Consensus 154 I~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~-aGAd~~V~G~sa 198 (231)
T 3ctl_A 154 LAELKAWREREGLEYEIEVDGSCNQATYEKLMA-AGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHH-HTCCEEEECTTT
T ss_pred HHHHHHHHhccCCCceEEEECCcCHHHHHHHHH-cCCCEEEEccHH
Confidence 344555555555555554444433445555443 489999999 54
No 186
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=36.11 E-value=48 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHcCCCEEEEccCC-CC-chhhhhccchhHHHhhcCCCcEEEECC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRG-LG-KIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~-~~-~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+....++..+ ++|+||+|-.+ .+ -+..++...+.+. +.++++|++.|.+
T Consensus 174 a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 4466777777 89999999765 23 3444555556555 6778899999876
No 187
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=35.85 E-value=1.5e+02 Score=22.77 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++|-+.+..........--+-..-+.|...++.||++..
T Consensus 59 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 59 LILKTVIDLVDK-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344444444432 34554433333555444 5568888999998887654332221112333556677799999985
No 188
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.83 E-value=92 Score=20.41 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=33.9
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECCC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKPP 192 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~~ 192 (197)
...+...|..+. ...+..+. ++..+...+|+|++...-... .++ ...+++-.. ..+||+++-..
T Consensus 31 ~~~L~~~g~~v~---~~~~~~~a-~~~l~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 31 QQLLSPLPYTLH---FARDATQA-LQLLASREVDLVISAAHLPQM-DGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHTTSSCEEE---EESSHHHH-HHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHhcccCcEEE---EECCHHHH-HHHHHcCCCCEEEEeCCCCcC-cHH---HHHHHHHhHCCCCeEEEEECC
Confidence 334444554332 23344444 445566789999998764321 111 222333333 35899988654
No 189
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=35.52 E-value=89 Score=20.18 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=30.9
Q ss_pred cCChhhHHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECCC
Q 046290 137 EGDPKDMICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKPP 192 (197)
Q Consensus 137 ~g~~~~~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~~ 192 (197)
..+..+.+..+.+. ..+|+|++...-.. ..++ ...+.+-... .+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAEL---AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 44555666666666 79999999876432 2221 2334444333 4888888553
No 190
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=35.47 E-value=1.6e+02 Score=24.71 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=28.4
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
++++|++.+...|..++..+.+.+ +.+++.+|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~-------------G~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI-------------GKNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHHh-------------CCCEEEEEEeCC
Confidence 689999999999988877766542 567899988644
No 191
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=35.46 E-value=86 Score=23.44 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 143 MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 143 ~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..++.+.+.+.|.|.+|-+..-...+ .-.+.+.+-+ .+.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCC
Confidence 34455567789999999864322222 2345555555 78999999865
No 192
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=35.26 E-value=1e+02 Score=22.20 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHhcCCceEEEEec-CChhhHHHHHHHHcCCCEEEEccCC
Q 046290 113 SAALLSRALQMCKDKMVKAESLVLE-GDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 113 ~~~~l~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...+.+.+.+.+++.|.+++..-+. ++-.+.+.+... .+|.||+++.-
T Consensus 32 ~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 32 NDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 3344555555556667777665554 344556666666 79999999864
No 193
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=35.16 E-value=1.4e+02 Score=22.23 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=39.5
Q ss_pred HHHHHHHHhHhcCCceEEEEec--CChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLE--GDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~--g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.+.+.+++.|.++...... ++..+ ..++.....++|-||+........... . +-+....+||+.+..
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~-----~-~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKS-----L-QRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHH-----H-HHHHHHTCCEEEESC
T ss_pred HHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-----H-HHHHHCCCCEEEEcC
Confidence 3444445555667766544333 34433 444555566899999875543322221 1 234556899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 95 ~ 95 (297)
T 3rot_A 95 R 95 (297)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=34.48 E-value=1e+02 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=36.2
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC---CCchhhhhccch-hHHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG---LGKIKRAFLGSV-SDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~---~~~~~~~~~gs~-~~~ll~~~~~pVliv~~ 191 (197)
+.+.|+++.. +..+ ++....++..+|.|++|+.+ .+..-+. +|.. .--+.++.++|++|+-+
T Consensus 229 L~~~GIpvtl-I~Ds----a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 229 LMQGGIDVTL-ITDS----MAAHTMKEKQISAVIVGADRIAKNGDTANK-IGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHTTTCEEEE-ECGG----GHHHHHHHTTCCEEEECCSEEETTCCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHcCCCEEE-Eehh----HHHHHhhhcCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEecc
Confidence 4556777643 3222 23333444579999999975 2223222 3443 33456677899999854
No 195
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.40 E-value=1.3e+02 Score=21.89 Aligned_cols=70 Identities=4% Similarity=-0.040 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.+.+.|..+......++.. ..+++.....++|-||+... .. ...+..+....+||+++..
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~~----~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----NE----NIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----GH----HHHHHHHHHC-CCEEEGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----Ch----HHHHHHHHcCCCCEEEEec
Confidence 3445555666677788776554445543 45666667779999999651 11 1122045566899998854
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 95 ~ 95 (277)
T 3e61_A 95 I 95 (277)
T ss_dssp C
T ss_pred c
Confidence 3
No 196
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=34.05 E-value=1.4e+02 Score=21.84 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 120 ALQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
..+.+.+.|+.+...-.. .+ ..+.+.+..++.++|++|+...+
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 345567778876431111 11 24578888899999999997654
No 197
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.43 E-value=1.4e+02 Score=21.89 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHhcCCc-eEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVK-AESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~-~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
...++.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. ..+ + -+....+||+++.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~---------~-~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTI---------P-PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCC---------C-TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHH---------H-HHHhCCCCEEEEc
Confidence 34455556666777876 54433334443 3456667777999999875 111 1 1346689999986
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 198
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=33.21 E-value=2e+02 Score=24.14 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCceEEEEecC--ChhhHHHHHHHHc----CCCEEEEccCCCCchhhhhccchhHHHhh
Q 046290 107 KSQEENSAALLSRALQMCKDKMVKAESLVLEG--DPKDMICQSAEQM----HIDLLVVGSRGLGKIKRAFLGSVSDYCAH 180 (197)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~----~~dllVlG~~~~~~~~~~~~gs~~~~ll~ 180 (197)
.+..++..+.-+++.+.+...+.-....+..| ...+.+.+.+++. ++|.||+=.+..+.-+-+.. +++
T Consensus 21 ~~~~~~v~~~~~~~~~~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~------~l~ 94 (500)
T 4f2d_A 21 PETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWIN------GLT 94 (500)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHH------HHH
Q ss_pred cCCCcEEEECCCCCCC
Q 046290 181 HAVCPIIIVKPPKEQH 196 (197)
Q Consensus 181 ~~~~pVliv~~~~~~~ 196 (197)
..++|||++....+..
T Consensus 95 ~l~~PvL~~~~q~~~~ 110 (500)
T 4f2d_A 95 MLNKPLLQFHTQFNAA 110 (500)
T ss_dssp HCCSCEEEEECCSCSS
T ss_pred hcCCCEEEEeCCCCCC
No 199
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.18 E-value=2.1e+02 Score=23.66 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=25.9
Q ss_pred HHHHhHhcCCceEEEEecCChh---hHHHHHHHHcCCCEEEEccCCCCchh
Q 046290 120 ALQMCKDKMVKAESLVLEGDPK---DMICQSAEQMHIDLLVVGSRGLGKIK 167 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~---~~I~~~a~~~~~dllVlG~~~~~~~~ 167 (197)
+..+....++.+.......++. ...++.++..++|+|++-+.++....
T Consensus 147 L~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 147 LRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccch
Confidence 3344445565543211112443 33455666667899999887766543
No 200
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=33.10 E-value=1.4e+02 Score=21.86 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=41.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..++.+.+.+++.|..+......++.. ..+++.....++|-||+......... ... +.+....+||+.+...
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PWL-QKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HHH-HHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HHH-HHHHHCCCcEEEecCC
Confidence 445555566677787765554444543 34455555679999998654311111 122 2345668999998654
No 201
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=33.03 E-value=1.4e+02 Score=21.77 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=27.7
Q ss_pred HHHhHhcCCceEEEEec--CC---hhhHHHHHHHHcCCCEEEEccCC
Q 046290 121 LQMCKDKMVKAESLVLE--GD---PKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~--g~---~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+.+.|+.+...-.. .+ ..+.+.+..++.++|++|+...+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 45567778766431111 11 24678889999999999998654
No 202
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=33.01 E-value=1.5e+02 Score=21.93 Aligned_cols=71 Identities=7% Similarity=-0.083 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecC--ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEG--DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.+.+.|..+......+ +....+.+.....++|-||+....... .. -..+....+||+++..
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~-~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND-------PR-VRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC-------HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc-------HH-HHHHhhCCCCEEEECC
Confidence 3455556666677777664433333 234567777777899999886432111 11 2234567899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 4
No 203
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=32.94 E-value=1.5e+02 Score=22.12 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=28.2
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeec
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQE 79 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~ 79 (197)
.++++|++.++..|..++..+.+.+ +.+++.+|+..
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~~-------------g~~v~av~~~~ 61 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRAL-------------KENVFALLMPT 61 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH-------------TTSEEEEECCS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHc-------------CCcEEEEEecC
Confidence 6799999999999988777776642 56788888743
No 204
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=32.65 E-value=1.2e+02 Score=24.46 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecCC----hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGD----PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..+++.+.+++ |+.+.+....++ ..+.+.+.+++.++|+|| |-.|.+- ..++..+.....+|++.||.
T Consensus 67 ~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II-avGGGs~------~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 67 LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILV-GVGGGKT------ADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEE-EESSHHH------HHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEE-EeCCcHH------HHHHHHHHHhcCCCEEEecC
Confidence 44556666677 777644445554 356677778888999765 3333221 23334444445899999997
Q ss_pred CCC
Q 046290 192 PKE 194 (197)
Q Consensus 192 ~~~ 194 (197)
...
T Consensus 139 Tag 141 (387)
T 3uhj_A 139 IAS 141 (387)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 205
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=32.59 E-value=1.8e+02 Score=22.69 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhH--HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDM--ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-..+..+. +.+.+++.++|-+++..........--+-..-+.|...++.||++..
T Consensus 78 ~~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 78 KRIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3444444444443 2444443333355544 45678889999999987654433221122333567778899999985
No 206
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.91 E-value=97 Score=19.52 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECCC
Q 046290 146 QSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKPP 192 (197)
Q Consensus 146 ~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~~ 192 (197)
+..++..+|+|++...-... .++ ...+.+-... .+|++++-..
T Consensus 40 ~~~~~~~~dlii~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 40 QRVETLKPDIVIIDVDIPGV-NGI---QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHCCSEEEEETTCSSS-CHH---HHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHhcCCCEEEEecCCCCC-ChH---HHHHHHHhcCCCCeEEEEeCC
Confidence 44455689999998764331 111 2334444443 4888888554
No 207
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=31.89 E-value=50 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=26.9
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++++.++..+.++.+..-.| .+ .+ +++++..
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L----------~~-~g-~V~vv~T 53 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCF----------TE-WA-EVRAVVT 53 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHH----------HT-TS-EEEEEEC
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHH----------hc-CC-CEEEEEc
Confidence 3579999999999888888877777 33 24 7777754
No 208
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=31.74 E-value=1.5e+02 Score=23.94 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEE---EEccCCCCchhhhhccchhHHHhhcCCCcEEE
Q 046290 112 NSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLL---VVGSRGLGKIKRAFLGSVSDYCAHHAVCPIII 188 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll---VlG~~~~~~~~~~~~gs~~~~ll~~~~~pVli 188 (197)
+.-+.+.++.....+.|+.+-+.+.+-...+.+ +|+| -+|++.--. ..-..+...++|||.+
T Consensus 136 ~GL~i~r~ll~~v~e~GlPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~PVg~ 200 (370)
T 1of8_A 136 KGLQSARQLFVNLTNIGLPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFPVGF 200 (370)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCeEEE
Confidence 334444455545567899998888776443333 6888 677764221 2224456688999998
Q ss_pred ECCC
Q 046290 189 VKPP 192 (197)
Q Consensus 189 v~~~ 192 (197)
=++.
T Consensus 201 Kngt 204 (370)
T 1of8_A 201 KNGT 204 (370)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 7664
No 209
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=31.71 E-value=1.9e+02 Score=22.89 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG 164 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~ 164 (197)
++..+.+.+.+.+.|++++..-........+..... ++|.||+|+.-..
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~ 319 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFASPTLN 319 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccC
Confidence 344444455555556655544433322334444444 8999999987543
No 210
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=31.70 E-value=1e+02 Score=20.47 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCHH----HHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAE----SFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~----s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.+++++.+...|+ ...++..|... ...+.++.++...+-
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A-----------~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASIS-----------ASMEYETSVFFMIXG 57 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHH-----------HHTTCEEEEEECTTG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHH-----------HHCCCCEEEEEEeCc
Confidence 4567777665543 44555555443 234678887766433
No 211
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=31.63 E-value=91 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.308 Sum_probs=36.4
Q ss_pred hHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC--Cchhhhhccchh-HHHhhcCCCcEEEECC
Q 046290 124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL--GKIKRAFLGSVS-DYCAHHAVCPIIIVKP 191 (197)
Q Consensus 124 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~--~~~~~~~~gs~~-~~ll~~~~~pVliv~~ 191 (197)
+.+.|+++.. +..+ ++....++..+|.|++|+.+- ++.-+ -+|... --+.++.++|++|+-+
T Consensus 202 L~~~GI~vtl-I~Ds----a~~~~M~~~~Vd~VivGAd~V~aNGv~N-KiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 202 LMEDGIDVTL-ITDS----MVGIVMQKGMVDKVIVGADRIVRDAVFN-KIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHTTCCEEE-ECGG----GHHHHHHTTCCSEEEECCSEEETTEEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhCCCCEEE-Eehh----HHHHHhhcCCCCEEEECccchhhcCccc-ccCHHHHHHHHHHcCCCEEEeCc
Confidence 4556887744 3222 333344445799999999752 22222 234433 3346677899999854
No 212
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=31.40 E-value=1.7e+02 Score=22.27 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCCEEEEccCCC---Cchhhhhccc-hhHHHhhcCCCcEEEECCC
Q 046290 152 HIDLLVVGSRGL---GKIKRAFLGS-VSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 152 ~~dllVlG~~~~---~~~~~~~~gs-~~~~ll~~~~~pVliv~~~ 192 (197)
++|.+++|+.+- +++-.. .|. ....+.++..+|++++-+.
T Consensus 177 ~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~vp~~V~a~~ 220 (276)
T 1vb5_A 177 EASIAIVGADMITKDGYVVNK-AGTYLLALACHENAIPFYVAAET 220 (276)
T ss_dssp TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECCG
T ss_pred cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcCCCEEEeccc
Confidence 799999999763 233333 343 3445577778999998653
No 213
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=31.17 E-value=1.6e+02 Score=21.82 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+..+.+.+.+.|..+......+ +....+.+.....++|-||+....... .. -..+....+||+++-..
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-------~~-~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-------FR-LQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-------HH-HHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-------HH-HHHHHhCCCCEEEECCC
Confidence 345555566667777665544332 345667788888899999997544321 11 23455678999998653
No 214
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=31.08 E-value=60 Score=24.43 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=24.5
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++++|.++. .++.|++. ++.+.+.|=
T Consensus 34 ~V~~I~~~lD~t~~---vi~eAi~~--------------~adlIitHH 64 (247)
T 1nmo_A 34 TVQKIVTGVTASQA---LLDEAVRL--------------GADAVIVHH 64 (247)
T ss_dssp BCCEEEEEEECCHH---HHHHHHHT--------------TCSEEEEEE
T ss_pred ccCEEEEEEcCCHH---HHHHHHhC--------------CCCEEEECC
Confidence 37899999999875 47777777 778888873
No 215
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=30.94 E-value=1.2e+02 Score=22.57 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh-hhHHHHHHHH--cCCCEEEEccC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP-KDMICQSAEQ--MHIDLLVVGSR 161 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~-~~~I~~~a~~--~~~dllVlG~~ 161 (197)
-+.++++++...+.+..+...+ .|.. .+.+... .+ .++|.+|+|+.
T Consensus 171 l~ki~~lr~~~~~~~~~~~I~v-dGGI~~~~~~~~-~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 171 LDRVIQVEKRLGNRRVEKLINI-DGSMTLELAKYF-KQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEE-ESSCCHHHHHHH-HHSSSCCCCEEECGG
T ss_pred HHHHHHHHHHHHhcCCCceEEE-ECCcCHHHHHHH-HHhCCCCcEEEEeeH
Confidence 3444556666665555555444 4544 4444444 45 68999999975
No 216
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=30.72 E-value=54 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEcc
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGS 160 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~ 160 (197)
.+..+.+.++..|+++...-+.....+.+.+..+ ++|.|+++-
T Consensus 45 ~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~G 87 (206)
T 3l4e_A 45 YVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECC
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECC
Confidence 4445556666667754432212223344445555 689999976
No 217
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.72 E-value=1.8e+02 Score=22.13 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..++.+.+.+.+.|..+......++.. ..+++.....++|-||+....... ......+...++||+++...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcCC
Confidence 345555666677777665544344443 335566666799999986533221 12234566778999988643
No 218
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=29.74 E-value=87 Score=23.55 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=29.1
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+++...+.++|+|.+|-+........ -...+++-. .+.|+++.+-.
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~--~~~v~~ir~-~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRR-FLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHH--HHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhhC-cCCCEEEecCc
Confidence 4566777778999999997432233322 244455544 67999987643
No 219
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=29.49 E-value=1.1e+02 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHH----HHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQS----AEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~----a~~~~~dllVlG 159 (197)
+...+.+.|+++.....-+|-.+.|.+. ++..++|+||..
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3344555677766555555544444433 332378988874
No 220
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.84 E-value=1.1e+02 Score=19.09 Aligned_cols=48 Identities=4% Similarity=-0.093 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEECCCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIVKPPK 193 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv~~~~ 193 (197)
+...+..++..+|+|++...-.. ..++ ...+++-.. ..+|++++-...
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEECCc
Confidence 44455667778999999876432 1111 233444443 458999886543
No 221
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=28.51 E-value=1.9e+02 Score=21.74 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..++.+.+.+++.|.++......++..+ ..++.....++|-||+......... ... +-+....+||+++...
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DVL-KQAGEQGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HHH-HHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HHH-HHHHHCCCCEEEECCC
Confidence 3444555666667877665554455543 3444445568999999754422211 112 2355678999999654
No 222
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=28.29 E-value=48 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGD 139 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~ 139 (197)
...++++.+.+.+.+++ ..+..||
T Consensus 47 ~~~l~~lv~~~~~~~~D--~vliaGD 70 (336)
T 2q8u_A 47 KKALDKVVEEAEKREVD--LILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESC
T ss_pred HHHHHHHHHHHHHhCCC--EEEECCc
Confidence 34566666666655544 4566777
No 223
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=28.24 E-value=71 Score=22.77 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=9.5
Q ss_pred CCCEEEEccCC
Q 046290 152 HIDLLVVGSRG 162 (197)
Q Consensus 152 ~~dllVlG~~~ 162 (197)
.+|.||+|+.-
T Consensus 78 ~aD~ii~gsP~ 88 (211)
T 1ydg_A 78 WAEAIVFSSPT 88 (211)
T ss_dssp HCSEEEEEEEE
T ss_pred HCCEEEEEcCc
Confidence 79999999864
No 224
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=28.09 E-value=1.4e+02 Score=25.70 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=41.6
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKP 191 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~ 191 (197)
..+...|.++.. +-..-+.+.|++.+++.++|+|.+......... .+..+.+.+-.. .++||+|--.
T Consensus 120 ~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 120 VVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEEcc
Confidence 344556665422 223367899999999999999999875433322 233444444332 3589887644
No 225
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=28.00 E-value=2.1e+02 Score=22.17 Aligned_cols=75 Identities=7% Similarity=-0.066 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+.++.+.+.+.. .+.+-.-+-. +..+.| .+.+++.++|-+++..........--+-..-+.|...++.||++..
T Consensus 68 ~~v~~~~v~~~~g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 68 KEEVRRTVEYVHG-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444444442 2444444432 554444 5568888999999976544322221112333556777789999986
No 226
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.80 E-value=1e+02 Score=18.53 Aligned_cols=47 Identities=4% Similarity=-0.024 Sum_probs=27.3
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv~~~ 192 (197)
+...+..+...+|++++...-.. ... -...+.+-.. ..+|++++-+.
T Consensus 35 ~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 34445556668999999875432 111 1234444444 45898888554
No 227
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=27.53 E-value=1.8e+02 Score=21.28 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
..+..+.+.+.+.|..+.......+. ...+.+.....++|-||+-..... .-.-+.+....+||+++-..
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECCC
Confidence 34445555666667655432222222 345666777779999998543211 11223455678999998654
No 228
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=27.26 E-value=1e+02 Score=21.81 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.7
Q ss_pred EEecCC
Q 046290 134 LVLEGD 139 (197)
Q Consensus 134 ~~~~g~ 139 (197)
.+..||
T Consensus 36 vi~~GD 41 (228)
T 1uf3_A 36 IALIGN 41 (228)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 344444
No 229
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=27.20 E-value=1.6e+02 Score=20.44 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.+..+. .+.++...+|+|++...-.. ..++ ...+.+-...+.||+++-
T Consensus 45 ~~~~~a-l~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 45 GDGQEA-VELAELHKPDLVIMDVKMPR-RDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp SSHHHH-HHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCSCEEEEE
T ss_pred CCHHHH-HHHHhhcCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEe
Confidence 344343 34556668999999876432 1111 334555555567988874
No 230
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.16 E-value=2.1e+02 Score=21.83 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChhh---HHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPKD---MICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~~---~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.++.+.+.+++.|+++......++..+ .|..+... .++|-||+.. ...... .. -+.+....+||+++..
T Consensus 22 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~-----~~-~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 22 YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAP-----QI-LRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHH-----HH-HHHHTTSCCEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHH-----HH-HHHHHhCCCcEEEEcC
Confidence 344445555666777766554556543 34444554 6999999853 211111 11 2245567899999854
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 95 ~ 95 (350)
T 3h75_A 95 P 95 (350)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.11 E-value=1.3e+02 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHH----HHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQS----AEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~----a~~~~~dllVlG 159 (197)
+.+.+.+.|+++.....-+|-.+.|.+. ....++|+||..
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 4455667788877666666554444443 334568988874
No 232
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.06 E-value=1.2e+02 Score=19.20 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=27.3
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh---cCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH---HAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~---~~~~pVliv~~~ 192 (197)
+...+..+...+|+|++...-.. ..++ ...+++-. ...+|++++-..
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 34445567778999999875322 1111 23334433 346899988653
No 233
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=26.79 E-value=1.1e+02 Score=24.04 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHhHhcCCceEEEE-ec-C--ChhhHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLV-LE-G--DPKDMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~-~~-g--~~~~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+++.+.+++.|+++.... .. + +..+.+ +.+++.++|+|| +|... ...++..+.-...+|++.||
T Consensus 49 ~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGs--------v~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 49 FGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGK--------AIDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHH--------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChH--------HHHHHHHHHhhcCCCEEEec
Confidence 34555566666777665433 22 2 234555 667777889888 55311 12223333333468999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
...
T Consensus 120 TT~ 122 (354)
T 3ce9_A 120 TST 122 (354)
T ss_dssp SCC
T ss_pred Ccc
Confidence 754
No 234
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.70 E-value=1.6e+02 Score=21.82 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=34.7
Q ss_pred HhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHH
Q 046290 123 MCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDY 177 (197)
Q Consensus 123 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ 177 (197)
..++.|.++-..+-.+.+.+.+..+.....+|+|.+.+-..+.-.+.|..+..++
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~k 163 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGK 163 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHH
Confidence 5667788887766445677777766654458999888766554343444444443
No 235
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=26.64 E-value=1.2e+02 Score=22.48 Aligned_cols=43 Identities=0% Similarity=-0.114 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCC---hhhHHHHHHHHcC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGD---PKDMICQSAEQMH 152 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~---~~~~I~~~a~~~~ 152 (197)
.+...+.+.++.+.+++.|+.+-.+...+. ..+.+.++.+..+
T Consensus 118 ~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 118 RQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcC
Confidence 355666777788888888987766554432 3456667776554
No 236
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=26.61 E-value=2.7e+02 Score=22.90 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=40.3
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh----hHHHHHHHHcCCCEEE-EccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK----DMICQSAEQMHIDLLV-VGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~----~~I~~~a~~~~~dllV-lG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
..+++.+.++..|+.+...+..|++. +.+.+.+++ ++|+|| +|... ...++..+.....+|++.||
T Consensus 106 ~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS--------viD~AK~iA~~~giP~I~IP 176 (450)
T 1ta9_A 106 CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK--------TMDSAKYIAHSMNLPSIICP 176 (450)
T ss_dssp THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH--------HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH--------HHHHHHHHHHhcCCCEEEEe
Confidence 45666666677787765455667543 344444555 788887 55211 12233333334579999999
Q ss_pred CCC
Q 046290 191 PPK 193 (197)
Q Consensus 191 ~~~ 193 (197)
...
T Consensus 177 TTA 179 (450)
T 1ta9_A 177 TTA 179 (450)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 237
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.27 E-value=1.4e+02 Score=19.47 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=26.3
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc-CCCcEEEECC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH-AVCPIIIVKP 191 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~-~~~pVliv~~ 191 (197)
+...+..+...+|+|++...-... .++ ...+.+-.. ..+||+++-.
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~-~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGM-DGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCC-CHH---HHHHHHHhhCCCCCEEEEEC
Confidence 444455566789999998764321 111 223334333 3589988854
No 238
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=26.21 E-value=73 Score=23.73 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=30.7
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCC
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
+.++.+.+++.|.++-..+-.+.+.+.+..+.. .+|+|.+-+-..
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~p 139 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIH--KADKITVMTVDP 139 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCT
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh--cCCEEEEeeecc
Confidence 445666777788888776655667777777766 788886544433
No 239
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.16 E-value=1.6e+02 Score=21.65 Aligned_cols=46 Identities=7% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
.+++.+.+.++..|.+++..-+.. .-.+...+..+ .+|.||+++.-
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~ 93 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQMPA 93 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEECCh
Confidence 344445555555677777665553 22334444444 79999999864
No 240
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=25.81 E-value=98 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=15.1
Q ss_pred ccEEEEEeCCCHHHHHH-HHHHHHh
Q 046290 31 KMKVMVAIDESAESFNA-LKWALDN 54 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~a-l~~a~~l 54 (197)
..++.|++|.++..... .+++..+
T Consensus 13 ~~~LcVgLD~~~~~~~~~~~~~~~l 37 (255)
T 3qw3_A 13 RSLLCVGLDPRAKTAAAAVEECKRL 37 (255)
T ss_dssp TCCEEEEECCCCSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchhcchHHHHHHHH
Confidence 45799999988643212 4555555
No 241
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=25.73 E-value=2.3e+02 Score=21.91 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHH--HHHHHHcCC-CEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMI--CQSAEQMHI-DLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~-dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
+.++.+.+.+.. .+.+-..+-..+..+.| .+.+++.++ |-+++..........--+-..-+.|...++.||++..
T Consensus 64 ~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (311)
T 3h5d_A 64 ELFAAVQKVVNG-RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYN 141 (311)
T ss_dssp HHHHHHHHHSCS-SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344444444432 24443333333555554 456777775 9888876544332221122344667888899999985
No 242
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=25.72 E-value=1.2e+02 Score=21.00 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=22.3
Q ss_pred HHHHhHhcCCceEEEEecCChhh----HHHHHHHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKD----MICQSAEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~----~I~~~a~~~~~dllVlG 159 (197)
+...+.+.|+++.....-+|-.+ .|.++.+..++|+||..
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 44455667877665544454333 34333332368988774
No 243
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.52 E-value=2.1e+02 Score=21.28 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccc-hhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGS-VSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs-~~~~ll~~~~~pVliv~~ 191 (197)
..++.+.+.+.+.|..+......++. ...+++.....++|-||+....... . ..+.+. . .+||+++..
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l~-~-~iPvV~i~~ 102 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAVL-E-GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHHH-T-TSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHHh-C-CCCEEEECC
Confidence 34555556667778777654444443 3456677777899999986543321 1 234444 4 899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 4
No 244
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=25.51 E-value=67 Score=24.28 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHH
Q 046290 117 LSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDY 177 (197)
Q Consensus 117 l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ 177 (197)
+.+..+.+++.|+++-..+..+.+.+.+..+.. .+|+|.+.+-..+.-.+.|+.+..++
T Consensus 123 ~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 123 IDRSLQLIKSFGIQAGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHH
Confidence 445556667778877776655666677766666 68888776654332222344444443
No 245
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=25.48 E-value=70 Score=25.96 Aligned_cols=56 Identities=9% Similarity=-0.099 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCCCC
Q 046290 139 DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194 (197)
Q Consensus 139 ~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~~~ 194 (197)
.-.+.+.+++++.++|-||.-....=.........+.+.+.+...+|+|.+-.+..
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 45678888999999999997665433333322233444666888999999865443
No 246
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.36 E-value=1.3e+02 Score=19.01 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=26.0
Q ss_pred hHHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEEC
Q 046290 142 DMICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVK 190 (197)
Q Consensus 142 ~~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~ 190 (197)
+...+..+. ..+|++++...-.. ..+. ...+.+-... .+|++++-
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 334455566 78999999875432 1111 2334444333 58999886
No 247
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=25.00 E-value=1.6e+02 Score=20.71 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.6
Q ss_pred CCCEEEEccCCC
Q 046290 152 HIDLLVVGSRGL 163 (197)
Q Consensus 152 ~~dllVlG~~~~ 163 (197)
.+|.||+|+.-.
T Consensus 69 ~aD~ii~~sP~y 80 (197)
T 2vzf_A 69 NADGLIVATPIY 80 (197)
T ss_dssp HCSEEEEEEECB
T ss_pred HCCEEEEEeCcc
Confidence 789999998643
No 248
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=24.95 E-value=1.1e+02 Score=20.78 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=35.9
Q ss_pred HhcCCceEEEEec--C-C--hhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 125 KDKMVKAESLVLE--G-D--PKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 125 ~~~~v~~~~~~~~--g-~--~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
++.|++++....- | + ....|.++.++.++|+||--..+.... .--|...++..-...+|++
T Consensus 64 ~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 64 NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTTCCEE
T ss_pred HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhCCCeE
Confidence 3567877653321 2 1 004699999999999999876552111 1224444555555567765
No 249
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=24.74 E-value=2e+02 Score=20.76 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhcCCceEEEEe--cCChhh--HHHHHHHHcC-CCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVL--EGDPKD--MICQSAEQMH-IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~--~g~~~~--~I~~~a~~~~-~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.++.+.+.+.+.|.++..... .++..+ ..++.....+ +|-||+.......... . -+.+....+||+++.
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~-----~-~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 18 VYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTP-----S-VAQYRARNIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHH-----H-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH-----H-HHHHHHCCCcEEEEe
Confidence 444455555666776654332 234432 2344444446 9999997643222221 1 123556789999996
Q ss_pred CC
Q 046290 191 PP 192 (197)
Q Consensus 191 ~~ 192 (197)
..
T Consensus 92 ~~ 93 (276)
T 3ksm_A 92 SD 93 (276)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 250
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=24.68 E-value=2.1e+02 Score=21.02 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.+++++.|+... .. ++.+ ++..+..+..+|+
T Consensus 12 ~~~lilAlD~~~~-~~----a~~~----------v~~~~~~v~~~Kv 43 (228)
T 3m47_A 12 MNRLILAMDLMNR-DD----ALRV----------TGEVREYIDTVKI 43 (228)
T ss_dssp GGGEEEECCCCSH-HH----HHHH----------HHTTTTTCSEEEE
T ss_pred CCCeEEEeCCCCH-HH----HHHH----------HHHcCCcccEEEE
Confidence 5689999998753 33 4444 3333555667777
No 251
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=24.46 E-value=2.6e+02 Score=21.94 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~ 162 (197)
+..+.+.+.+.+.|++++..-........+..... ++|.||+|+.-
T Consensus 272 ~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~ 317 (404)
T 2ohh_A 272 KMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPT 317 (404)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCE
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECcc
Confidence 33444444455566666554443333444555455 89999999874
No 252
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.43 E-value=1.4e+02 Score=18.86 Aligned_cols=64 Identities=6% Similarity=0.030 Sum_probs=32.9
Q ss_pred HHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCC----chhhhhccchhHHHhhc-CCCcEEEECC
Q 046290 121 LQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLG----KIKRAFLGSVSDYCAHH-AVCPIIIVKP 191 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~----~~~~~~~gs~~~~ll~~-~~~pVliv~~ 191 (197)
...+...|..+. ...+. +...+..+...+|+|++...-.. ....+ ...+.+-.. ..+|++++-.
T Consensus 20 ~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 20 QLLLKNHFSKVI---TLSSP-VSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHTTTSSEEE---EECCH-HHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHhCCcEEE---EeCCH-HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 333444455432 22333 44555666678999999875320 11111 223334333 3588888743
No 253
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=24.37 E-value=1.3e+02 Score=23.66 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred HHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhcCCCcEEEE
Q 046290 121 LQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 121 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~~~~pVliv 189 (197)
.+.+++.+.-+-..-..+ ...++|++.|++.+.-+|+-.+.+.....+ ..+......... .++||.+-
T Consensus 9 l~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValH 78 (305)
T 1rvg_A 9 LKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVH 78 (305)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 334444444333333344 789999999999999999987764322221 234566666777 88998764
No 254
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=24.32 E-value=49 Score=23.97 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=34.7
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcC--CCEEEEccCCC---CchhhhhccchhH-HHhhcCCCcEEEECC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMH--IDLLVVGSRGL---GKIKRAFLGSVSD-YCAHHAVCPIIIVKP 191 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~--~dllVlG~~~~---~~~~~~~~gs~~~-~ll~~~~~pVliv~~ 191 (197)
...|+++.. +... ++....++.. +|.+++|+.+- +..-+ -+|+..- -+.++..+|++++-+
T Consensus 27 ~~~gI~vtl-I~Ds----a~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 27 VYDKIPSTL-ITDS----SIAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHTCCBEE-BCGG----GHHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHcCCCEEE-Eech----HHHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 445787744 3222 2333344445 99999999752 22222 2344333 345666899999854
No 255
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=24.28 E-value=2.1e+02 Score=21.42 Aligned_cols=35 Identities=9% Similarity=-0.075 Sum_probs=27.3
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
.++++|++.++..|..++..+...+ +.+++.+++.
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~-------------~~~v~av~~~ 59 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF-------------KENAHALLMP 59 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEECC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC-------------CCCEEEEEeC
Confidence 4689999999999998888777762 2467778774
No 256
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.20 E-value=1.4e+02 Score=18.93 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=27.9
Q ss_pred hHHHHHHHH-cCCCEEEEccCCCCchhhhhccchhHHHhh---cCCCcEEEECCC
Q 046290 142 DMICQSAEQ-MHIDLLVVGSRGLGKIKRAFLGSVSDYCAH---HAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~-~~~dllVlG~~~~~~~~~~~~gs~~~~ll~---~~~~pVliv~~~ 192 (197)
+...+..++ ..+|+|++...-.+...++ ...+++-. ...+||+++-..
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 334455566 7899999987543122221 23344443 346899988653
No 257
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=24.03 E-value=1.2e+02 Score=23.89 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHcCCCEEEEccCCC--CchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 140 PKDMICQSAEQMHIDLLVVGSRGL--GKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 140 ~~~~I~~~a~~~~~dllVlG~~~~--~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
+....++..+ ++|+||+|-.+. |-+..++..-+.+.|.. + |++.|.+
T Consensus 173 a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~Al~~-s--~kV~v~n 221 (311)
T 3c3d_A 173 ISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMRELLKK-K--KVVAVSP 221 (311)
T ss_dssp CCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHHHHT-S--EEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHHHHc-C--CEEEEcc
Confidence 4567888888 899999997652 33444566667776544 4 8877765
No 258
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.98 E-value=2.2e+02 Score=21.03 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 114 AALLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 114 ~~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+-..... ...-..+....+||+++-.
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 28 INVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 345555666667777665432222222 345667777789999998643221 1112335567899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 100 ~ 100 (295)
T 3hcw_A 100 P 100 (295)
T ss_dssp C
T ss_pred C
Confidence 4
No 259
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=23.75 E-value=1.4e+02 Score=18.76 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=32.6
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc--CCCcEEEECCC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH--AVCPIIIVKPP 192 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~--~~~pVliv~~~ 192 (197)
...|..+.. ..+..+.+....+...+|+|++...-... .++ ...+.+-.. ..+|++++-..
T Consensus 28 ~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 28 KSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQPE-SGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSSS-CHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCCC-CHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 344555422 34455555544444349999998763321 111 233444443 35888888654
No 260
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.72 E-value=1.5e+02 Score=18.95 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh---cCCCcEEEECCC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH---HAVCPIIIVKPP 192 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~---~~~~pVliv~~~ 192 (197)
..+...|..+.. ....+. +...+..+...+|+|++...-.. ..+ -...+.+-. ...+|++++-..
T Consensus 23 ~~L~~~~~~~~v-~~~~~~-~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 23 RVLDRKDIHCQL-EFVDNG-AKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHTTCCEEE-EEESSH-HHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHhcCCCeeE-EEECCH-HHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 334445554333 223334 34445566778999999875322 111 123344443 235899988654
No 261
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.39 E-value=2.2e+02 Score=20.89 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCCh--hhH---HHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDP--KDM---ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~--~~~---I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++.+.+.+++.|..+......++. ... +++.....++|-||+...... . ...+. +....+||+++
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~~-l~~~~iPvV~~ 96 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLDE-LHRMHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHHH-HHHHCSSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHHH-HhhcCCCEEEE
Confidence 34444555556667665433222333 233 556666678999988653322 1 11222 34467999988
Q ss_pred CCC
Q 046290 190 KPP 192 (197)
Q Consensus 190 ~~~ 192 (197)
...
T Consensus 97 ~~~ 99 (290)
T 2rgy_A 97 NRA 99 (290)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 262
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.30 E-value=1.5e+02 Score=18.80 Aligned_cols=47 Identities=4% Similarity=-0.022 Sum_probs=28.0
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhh---cCCCcEEEECCC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAH---HAVCPIIIVKPP 192 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~---~~~~pVliv~~~ 192 (197)
+...+..+...+|+|++...-.. ..+. ...+.+-. ...+||+++-..
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 44555666778999999876432 1111 23344444 345899988543
No 263
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.21 E-value=1.6e+02 Score=19.26 Aligned_cols=61 Identities=7% Similarity=0.091 Sum_probs=31.5
Q ss_pred HhcCCceEEEEecCChhhHHHHHHHHc--CCCEEEEccCCCCchhhhhccchhHHHhhcC-CCcEEEECCC
Q 046290 125 KDKMVKAESLVLEGDPKDMICQSAEQM--HIDLLVVGSRGLGKIKRAFLGSVSDYCAHHA-VCPIIIVKPP 192 (197)
Q Consensus 125 ~~~~v~~~~~~~~g~~~~~I~~~a~~~--~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~-~~pVliv~~~ 192 (197)
...|..+ .....+..+.+ +..++. .+|+|++...-.. ..++ ...+++-... .+||+++-..
T Consensus 57 ~~~g~~v--~~~~~~~~~al-~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 57 TSEGFNI--IDTAADGEEAV-IKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHTTCEE--EEEESSHHHHH-HHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HhCCCeE--EEEECCHHHHH-HHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 4445544 21334444444 444445 7899999876432 1111 2334444433 4888888553
No 264
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=23.10 E-value=90 Score=25.10 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCc------hhh------hh-----ccchhHHHhhc
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGK------IKR------AF-----LGSVSDYCAHH 181 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~------~~~------~~-----~gs~~~~ll~~ 181 (197)
+.+.+++.+.-+-..-+.+ +...++++.|++.+..+|+-.+.+... +.. .+ +......+..+
T Consensus 20 ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~ 99 (358)
T 1dos_A 20 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEH 99 (358)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHH
Confidence 3444454554443334444 789999999999999999877654211 111 11 23445566777
Q ss_pred CCCcEEEE
Q 046290 182 AVCPIIIV 189 (197)
Q Consensus 182 ~~~pVliv 189 (197)
.++||.+-
T Consensus 100 ~~VPVaLH 107 (358)
T 1dos_A 100 YGVPVILH 107 (358)
T ss_dssp HTCEEEEE
T ss_pred CCCCEEEE
Confidence 88998764
No 265
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.06 E-value=2.3e+02 Score=20.90 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHhcCCceEEEEe-cCChhh--HHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVL-EGDPKD--MICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~-~g~~~~--~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..++.+.+.+++.|..+..... .++..+ ..++.....++|-||+.......... .. +-+....+||+++..
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 21 RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----TI-NKAVDAGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----HH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----HH-HHHHHCCCcEEEECC
Confidence 3445555566667776654322 335433 34455555699999986544322221 11 234556899999865
Q ss_pred C
Q 046290 192 P 192 (197)
Q Consensus 192 ~ 192 (197)
.
T Consensus 95 ~ 95 (305)
T 3g1w_A 95 G 95 (305)
T ss_dssp C
T ss_pred C
Confidence 4
No 266
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=22.96 E-value=1.8e+02 Score=21.56 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCC
Q 046290 110 EENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHI 153 (197)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~ 153 (197)
.+...+.+.++.+.+++.|+.+-.+-.. +..+.+.++.+..+.
T Consensus 134 ~~~~~~~l~~l~~~a~~~Gv~l~lE~~~-~~~~~~~~l~~~~~~ 176 (290)
T 3tva_A 134 YSELVRVTQDLLTHAANHGQAVHLETGQ-ESADHLLEFIEDVNR 176 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCS-SCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCC-CCHHHHHHHHHhcCC
Confidence 3455667778888888889876554433 345666666665543
No 267
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=22.50 E-value=58 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=26.8
Q ss_pred CccEEEEEeCCCHHHH-HHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESF-NALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~-~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+.+||++++.++...- .+++..-.+ .+ .+.+++++..
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L----------~~-~g~eV~vv~T 43 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERL----------VE-LGAKVTPFVT 43 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHH----------HH-TTCEEEEECS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHH----------hh-CCCEEEEEEC
Confidence 3579999999997777 777766666 22 2678887753
No 268
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=22.50 E-value=3.6e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.4
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.++++|++.+...|.-++..+.+.+ +.+++.+|+...
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~~-------------G~~v~~v~vd~g 291 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKIF-------------KERFFGIFIDNG 291 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECS
T ss_pred CceEEEEcccCCCHHHHHHHHHHHh-------------CCeEEEEEEecC
Confidence 5689999999998887776665532 568999998543
No 269
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=22.42 E-value=42 Score=27.69 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=26.5
Q ss_pred CChhhHHHHHHH-HcCCCEEEEccCCCCchhhhhccchhHHHhhcCC
Q 046290 138 GDPKDMICQSAE-QMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV 183 (197)
Q Consensus 138 g~~~~~I~~~a~-~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~ 183 (197)
|+-.+.+++.++ +.++.+|.+-+.+..+-...-.......++++..
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~ 159 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARCP 159 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTCC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHhh
Confidence 655566666654 6689999988876442111122344555666543
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.26 E-value=3.2e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCEEEEccCCCCch
Q 046290 144 ICQSAEQMHIDLLVVGSRGLGKI 166 (197)
Q Consensus 144 I~~~a~~~~~dllVlG~~~~~~~ 166 (197)
.+..++..++|+|++-+.++...
T Consensus 175 ~l~~~~~~~~D~VIIDTpG~l~~ 197 (433)
T 2xxa_A 175 ALKEAKLKFYDVLLVDTAGRLHV 197 (433)
T ss_dssp HHHHHHHTTCSEEEEECCCCCTT
T ss_pred HHHHHHhCCCCEEEEECCCcccc
Confidence 34444445789999988766544
No 271
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=22.07 E-value=1.4e+02 Score=23.55 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhc-CCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHH-AVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~-~~~pVliv 189 (197)
+.+.+++.+.-+-..-..+ +..++|++.|++.+.-+|+-.+.+.....+ -++.......... ..+||.+-
T Consensus 9 ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 81 (323)
T 2isw_A 9 MLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIH 81 (323)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3444454544443333444 789999999999999999887764211111 1234555666666 78998764
No 272
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=21.86 E-value=1.2e+02 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEee
Q 046290 29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78 (197)
Q Consensus 29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~ 78 (197)
+|+++||| ++.+......++.+.++ |.++.+++..
T Consensus 4 m~~~kiLI-~g~g~~a~~i~~aa~~~--------------G~~~v~v~~~ 38 (446)
T 3ouz_A 4 MEIKSILI-ANRGEIALRALRTIKEM--------------GKKAICVYSE 38 (446)
T ss_dssp TCCCEEEE-CCCHHHHHHHHHHHHHT--------------TCEEEEEEEG
T ss_pred cccceEEE-ECCCHHHHHHHHHHHHc--------------CCEEEEEEcC
Confidence 56889999 56666666666666666 7777777543
No 273
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=21.79 E-value=1.2e+02 Score=23.00 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=27.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecC
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEP 80 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~ 80 (197)
.+|+|++. +..|...+..+..+ +.++.++|+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~--------------~~~i~vv~iDtg 88 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL--------------NRNVKVFSLDTG 88 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH--------------CTTCCEEEECCS
T ss_pred CCEEEEee-cHHHHHHHHHHHHh--------------CCCceEEEEeCC
Confidence 57999999 99999999888877 456778888443
No 274
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=21.74 E-value=1.8e+02 Score=23.56 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=26.3
Q ss_pred cEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEE
Q 046290 32 MKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVH 76 (197)
Q Consensus 32 ~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~ 76 (197)
++|+++.|++.....|...++..+. ..+..+.++.
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~----------~~g~~~~v~~ 322 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLL----------SAGVEVYPVY 322 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHH----------HTTCEEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHH----------hCCCeEEEEE
Confidence 6899999999988888887777743 2356666653
No 275
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=21.73 E-value=2.1e+02 Score=19.95 Aligned_cols=40 Identities=0% Similarity=0.028 Sum_probs=22.2
Q ss_pred HHHHhHhcCCceEEEEecCChh----hHHHHHHHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPK----DMICQSAEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~----~~I~~~a~~~~~dllVlG 159 (197)
+.+.+.+.|+++.....-+|-. +.|.+++++.++|+||..
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3444556687766554445433 344444443358988874
No 276
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=21.59 E-value=1.2e+02 Score=22.70 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=28.1
Q ss_pred hHHHHHHHHcCCCEEEEccCCCCc------------------hhhhhccchhHHHhhcCCCcEEEECC
Q 046290 142 DMICQSAEQMHIDLLVVGSRGLGK------------------IKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 142 ~~I~~~a~~~~~dllVlG~~~~~~------------------~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
...++.+.+.++|++|-|--.... .+++++....+.+-.+.++++.+++.
T Consensus 176 ~~~~~~a~~~gaD~~iTGd~~~h~~~~a~e~gi~~i~~GH~~tE~~~~~~l~~~L~~~~~~~v~~~~~ 243 (247)
T 1nmo_A 176 QSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_dssp GGGHHHHHHHCCSEEEESCCCHHHHHHHHHTTCEEEECCHHHHTSHHHHHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEcCccHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 344455666678888877643211 12233345555565566777777765
No 277
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.44 E-value=2.7e+02 Score=21.12 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
..++.+.+.+.+.|..+......+ +....+++.....++|-||+... + ..+....+||+++-.
T Consensus 81 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~----~----------~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 81 ESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV----V----------GSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC----T----------TCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch----H----------HHHhhCCCCEEEECc
Confidence 344455555666677665443333 11234556666679999998654 1 123456789888854
No 278
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=21.43 E-value=77 Score=20.36 Aligned_cols=37 Identities=8% Similarity=-0.121 Sum_probs=24.0
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
+++||+++..+-.+.-..+..-.. ++..|.++.+-++
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~----------~~~~gi~~~i~a~ 39 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQ----------AEKYEVPVIIEAF 39 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHH----------HHHSCCSEEEEEE
T ss_pred CcEEEEECCCchhHHHHHHHHHHH----------HHHCCCCeEEEEe
Confidence 468999998875555555544455 5555767766665
No 279
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=21.38 E-value=1.8e+02 Score=21.61 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=39.0
Q ss_pred HHHHHHHHhHhcCCceEEEEecCCh--hhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEEC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDP--KDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~ 190 (197)
.++.+.+.+.+.|..+......++. ...+++.....++|-||+....... .-..+....+||+++-
T Consensus 32 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 32 IVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEEC
Confidence 4444556666677766554444444 3456666677799999886533111 1123445678998884
No 280
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=21.21 E-value=1.3e+02 Score=23.67 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHHHHHHHcCCCEEEEccCCCCchhh-hhccchhHHHhhc-CCCcEEEE
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMICQSAEQMHIDLLVVGSRGLGKIKR-AFLGSVSDYCAHH-AVCPIIIV 189 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllVlG~~~~~~~~~-~~~gs~~~~ll~~-~~~pVliv 189 (197)
+.+.+++.+.-+-..-..+ +...+|++.|++.+.-+|+-.+.+.....+ .++.......... .++||.+-
T Consensus 8 ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 80 (307)
T 3n9r_A 8 ILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_dssp HHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEE
T ss_pred HHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3344444444443334444 789999999999999999887654221111 2334555555565 78998763
No 281
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.18 E-value=1.7e+02 Score=20.71 Aligned_cols=38 Identities=13% Similarity=-0.093 Sum_probs=22.9
Q ss_pred HHHHhHhcCCceEEEEecCChh----hHHHHHHHHcCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPK----DMICQSAEQMHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~----~~I~~~a~~~~~dllVlG 159 (197)
+.+.+.+.|+++.....-+|-. +.|.++++ ++|+||..
T Consensus 28 l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~--~~DlVitt 69 (172)
T 3kbq_A 28 IGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE--VSDLVVSS 69 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH--HCSEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEEc
Confidence 4455666788776655555433 34444444 48988864
No 282
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.05 E-value=2.8e+02 Score=21.08 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++.+.+.+.+.|..+.......+.. ..+++.....++|-||+....... ..-..+....+||+++
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 455556667777787765443334443 344555566789998886433221 1123456678999988
No 283
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=21.01 E-value=81 Score=23.16 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhHhcCCce-EEEEecCChhhHHHHHHHHcCCCEEEEccCC-CCchhhhhccchhHHHhhcCCCcEEEE
Q 046290 112 NSAALLSRALQMCKDKMVKA-ESLVLEGDPKDMICQSAEQMHIDLLVVGSRG-LGKIKRAFLGSVSDYCAHHAVCPIIIV 189 (197)
Q Consensus 112 ~~~~~l~~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~-~~~~~~~~~gs~~~~ll~~~~~pVliv 189 (197)
..++.++.+.+.+++.+++- -.-...|..+....+..+ + .+|++..+. ......+-+..-..+-+.....+|+.-
T Consensus 35 NT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 111 (206)
T 1t57_A 35 NTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAG 111 (206)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEECC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEe
Confidence 34556666667777767642 222223566666665442 3 888887652 222222334444555566666666543
No 284
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=21.01 E-value=1.9e+02 Score=19.17 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECC
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKP 191 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~ 191 (197)
.+..+ .++..++..+|+|++...-.. ..+ -...+.+-...++|++++-.
T Consensus 58 ~~~~~-al~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 58 KDGLE-AVEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SSHHH-HHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred CCHHH-HHHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 34444 444555668999999876332 111 12345555556688888854
No 285
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=20.99 E-value=1e+02 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=24.6
Q ss_pred CccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 30 KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 30 ~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++|++++|.++. .++.|++. ++.+.+.|=
T Consensus 35 ~V~~I~~alD~t~~---vi~eAi~~--------------~adlIitHH 65 (242)
T 2yyb_A 35 TVRKVGAAVDAGEA---IFRKALEE--------------EVDFLIVHH 65 (242)
T ss_dssp BCCCEEEEEECSHH---HHHHHHHT--------------TCSEEEEEE
T ss_pred ccCEEEEEEcCCHH---HHHHHHHC--------------CCCEEEECC
Confidence 37899999998864 56677777 888888884
No 286
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.98 E-value=1.8e+02 Score=18.94 Aligned_cols=63 Identities=6% Similarity=0.051 Sum_probs=34.0
Q ss_pred HHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhc---CCCcEEEECCC
Q 046290 122 QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHH---AVCPIIIVKPP 192 (197)
Q Consensus 122 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~---~~~pVliv~~~ 192 (197)
..+...|..+ ....+. +...+..++..+|+|++...-.. ..++ ...+.+-.. ..+|++++-..
T Consensus 25 ~~L~~~g~~v---~~~~~~-~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 25 HILEETGYQT---EHVRNG-REAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHTTTCEE---EEESSH-HHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHCCCEE---EEeCCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 3334445543 222343 44455667778999999876332 1111 233444333 45899988653
No 287
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=20.95 E-value=3e+02 Score=21.40 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHHHHhHhcCCceEEEEecCCh-hhHHHHHHHHcCCCEEEEccCC
Q 046290 119 RALQMCKDKMVKAESLVLEGDP-KDMICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 119 ~~~~~~~~~~v~~~~~~~~g~~-~~~I~~~a~~~~~dllVlG~~~ 162 (197)
...+.+.+.|+.+.. ..+. ..++.+..++.++|++|+-..+
T Consensus 49 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQ---PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCCEEC---CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEEC---cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 355667778887522 2222 2477888889999999998765
No 288
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.80 E-value=1.6e+02 Score=21.60 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccC
Q 046290 115 ALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSR 161 (197)
Q Consensus 115 ~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~ 161 (197)
+.++++++...+.+.++...+.-|--.+.+.+..+ .++|.+|+|+.
T Consensus 158 ~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~-aGad~vvvGSa 203 (230)
T 1tqj_A 158 PKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE-AGANAIVAGSA 203 (230)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHH-HTCCEEEESHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHH-cCCCEEEECHH
Confidence 34445555555555555555555522355555433 38999999974
No 289
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=20.75 E-value=3e+02 Score=21.39 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=24.3
Q ss_pred CChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290 138 GDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII 187 (197)
Q Consensus 138 g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl 187 (197)
|.....-.+....+++|.||+-....+. .+.+..++.+||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~~---------~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDEY---------YEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTTC---------HHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChhH---------HHHHHHhCCCCEE
Confidence 3333344444455578999997654332 3455677888865
No 290
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=20.41 E-value=2.1e+02 Score=20.40 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=22.4
Q ss_pred HHHHhHhcCCceEEEEecCChhhHHHHHHHH---cCCCEEEEc
Q 046290 120 ALQMCKDKMVKAESLVLEGDPKDMICQSAEQ---MHIDLLVVG 159 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllVlG 159 (197)
+...+++.|.++.....-.|-.+.|.+..++ .++|+||..
T Consensus 54 L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 54 VTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 4455566777766554445433444433222 479998874
No 291
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.41 E-value=73 Score=23.39 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=25.3
Q ss_pred ccEEEEEeCCCHHHHH-HHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFN-ALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~-al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
.++|++++.++...-+ +++..-.+ .+ .|.+++++..
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L----------~~-~g~eV~vv~T 41 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKL----------IA-EGAEVRPVVS 41 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHH----------HH-TTCEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHH----------Hh-CCCEEEEEEe
Confidence 5799999999976655 66666555 22 2788888754
No 292
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=20.35 E-value=3.2e+02 Score=21.58 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhcCCceEEEE-ecCC----hhhHHHHHHHHcCCCEEE-Ecc
Q 046290 116 LLSRALQMCKDKMVKAESLV-LEGD----PKDMICQSAEQMHIDLLV-VGS 160 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~-~~g~----~~~~I~~~a~~~~~dllV-lG~ 160 (197)
..+++.+.++..|+.+...- ..++ ..+.+.+.+++.++|+|| +|.
T Consensus 47 ~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 47 VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 34555555566666543211 1223 357777888888999888 553
No 293
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=20.34 E-value=40 Score=21.16 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=23.8
Q ss_pred HHHHHHHhHh-cCCceEEEEecCChhhHHHHHHHH-cCCCEEEEccC
Q 046290 117 LSRALQMCKD-KMVKAESLVLEGDPKDMICQSAEQ-MHIDLLVVGSR 161 (197)
Q Consensus 117 l~~~~~~~~~-~~v~~~~~~~~g~~~~~I~~~a~~-~~~dllVlG~~ 161 (197)
++++.+.+++ .+. ....+.|+.++.= +-.. .++|++|+...
T Consensus 4 l~~i~~~l~~~~~~--~~v~LFGS~ArG~--~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 4 MKEIKEITKKDVQD--AEIYLYGSVVEGD--YSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHCTT--CEEEEESHHHHCC--SSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHcCC--cEEEEEEEEEeCC--CCCCCCceEEEEEeCC
Confidence 3444445544 233 4556788776652 2233 58999998764
No 294
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.29 E-value=2.6e+02 Score=20.41 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=41.7
Q ss_pred HHHHHHHHhHhcCCceEEEEecCChh--hHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEEEECCC
Q 046290 116 LLSRALQMCKDKMVKAESLVLEGDPK--DMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP 192 (197)
Q Consensus 116 ~l~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVliv~~~ 192 (197)
.++.+.+.+.+.|..+......++.. ..+++.....++|-||+-......... .....+ -+....+||+++-..
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~-~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP--NIGYYL-NLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT--THHHHH-HHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC--cHHHHH-HHHhcCCCEEEEecC
Confidence 44445556666787766554444543 345555667799999986543221100 001112 345678999998653
No 295
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=20.28 E-value=1.6e+02 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=27.6
Q ss_pred cCCCEEEEccCCCCchhhhhcc-chhHHHhhcCCCcEEEEC
Q 046290 151 MHIDLLVVGSRGLGKIKRAFLG-SVSDYCAHHAVCPIIIVK 190 (197)
Q Consensus 151 ~~~dllVlG~~~~~~~~~~~~g-s~~~~ll~~~~~pVliv~ 190 (197)
.++|.|+++. |.+.+..+.+| ++++.+....++|++-|+
T Consensus 65 ~dld~Iav~~-GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs 104 (218)
T 2a6a_A 65 KDLDVVGVGI-GPGGLTGLRVGIATVVGLVSPYDIPVAPLN 104 (218)
T ss_dssp GGCSEEEEEC-CSSCHHHHHHHHHHHHHHHGGGTCCEEEEC
T ss_pred HHCCEEEEEc-CCCchHhHHHHHHHHHHHHHHcCCCEEEeC
Confidence 3689999974 44666666666 466666677789998775
No 296
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.20 E-value=2.7e+02 Score=20.67 Aligned_cols=21 Identities=10% Similarity=-0.223 Sum_probs=14.4
Q ss_pred hhHHHHHHHHcCCCEEEEccCCC
Q 046290 141 KDMICQSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 141 ~~~I~~~a~~~~~dllVlG~~~~ 163 (197)
...+.+... .+|.||+++.-.
T Consensus 89 ~~~l~~~i~--~AD~iI~~sP~Y 109 (247)
T 2q62_A 89 VQELRELSI--WSEGQVWVSPER 109 (247)
T ss_dssp HHHHHHHHH--HCSEEEEEEECS
T ss_pred HHHHHHHHH--HCCEEEEEeCCC
Confidence 455555555 789999988653
No 297
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=20.08 E-value=88 Score=21.96 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCCEEEEccCC
Q 046290 143 MICQSAEQMHIDLLVVGSRG 162 (197)
Q Consensus 143 ~I~~~a~~~~~dllVlG~~~ 162 (197)
.+.+... .+|.||+|+.-
T Consensus 65 ~~~~~l~--~aD~ii~~sP~ 82 (193)
T 1rtt_A 65 RFREQIR--AADALLFATPE 82 (193)
T ss_dssp HHHHHHH--HCSEEEEECCE
T ss_pred HHHHHHH--hCCEEEEEccc
Confidence 3444444 78999999864
No 298
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=20.05 E-value=2.6e+02 Score=20.36 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEe
Q 046290 31 KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHV 77 (197)
Q Consensus 31 ~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v 77 (197)
..++.|+.|+... ..+++.+-.+ +..+..+++
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~--------------~~~~~~ikv 36 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSV--------------GNEVDVIEA 36 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH--------------GGGCSEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhh--------------CCCceEEEE
Confidence 4589999998753 5556666666 555666777
No 299
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.04 E-value=67 Score=20.93 Aligned_cols=42 Identities=2% Similarity=-0.097 Sum_probs=24.1
Q ss_pred HHHHhHhcCCceEEEEecC-ChhhHHH-HHHHHcCCCEEEEccCCC
Q 046290 120 ALQMCKDKMVKAESLVLEG-DPKDMIC-QSAEQMHIDLLVVGSRGL 163 (197)
Q Consensus 120 ~~~~~~~~~v~~~~~~~~g-~~~~~I~-~~a~~~~~dllVlG~~~~ 163 (197)
+.+.+++.|+++....... .+...|. +..+ ++|+||+.....
T Consensus 25 LekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 25 LKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 4455566677766655443 2222231 2233 789999998754
Done!