BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046291
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 315 bits (806), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/188 (80%), Positives = 173/188 (92%), Gaps = 1/188 (0%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVG +GLRCKRELWRVQY LSRIRNAAR+
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 61 LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
LLTLDEK+PRRIFEG+ALLRRM RYGLL+ TQNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
AKSIHHARVLI+Q+HIRVGRQ+VNIPSF+VRV++Q HV SLTS GRPGRVKR+ +
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFG-GGRPGRVKRRNE 179
Query: 181 KAAAKKSA 188
+A AKK++
Sbjct: 180 RAGAKKAS 187
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 306 bits (783), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 144/188 (76%), Positives = 172/188 (91%), Gaps = 1/188 (0%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVG +GLR KRELWRVQY+LSRIRNAARD
Sbjct: 1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60
Query: 61 LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
LLTLDEK PRRIFEG+ALLRRM RYGLL+ +QNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct: 61 LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
AKSIHH+RVLI+Q+HIRVG+Q+VNIPSF+VR+D+Q H+ +LTS GRPGRVKR+ +
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFG-GGRPGRVKRRNE 179
Query: 181 KAAAKKSA 188
K+A+KK++
Sbjct: 180 KSASKKAS 187
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 250 bits (638), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/186 (63%), Positives = 153/186 (82%), Gaps = 4/186 (2%)
Query: 9 NYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKD 68
NY KT PRRP+EKER+DAEL++VG FGL+ K E+WRVQYAL++IR AAR+LL LDEKD
Sbjct: 4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKD 63
Query: 69 PRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHAR 128
P+RIFEG ALLRR+ + G++E ++NKLDY+L L V+ F+ERRLQT+VFK GLAKSIHHAR
Sbjct: 64 PKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHAR 123
Query: 129 VLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSA 188
VLIK +HIRVG+Q+VN+PSFLVRV++Q H+G++ TS L GRPG R+A+K A S+
Sbjct: 124 VLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLA-GGRPG---RRARKMAKNNSS 179
Query: 189 GGADED 194
G +E+
Sbjct: 180 KGEEEN 185
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 146/183 (79%), Gaps = 3/183 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K K PRRP+EKERLD EL+L+G+FGL+ KRE+WRV+Y L+++R AAR+LLTL++KDP+R
Sbjct: 10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKR 69
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ + G+L+ T+ KLDYVL L VE FLERRLQT VFK GLAKSIHHAR+LI
Sbjct: 70 LFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILI 129
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
KQ HIRV RQ+V++PSF+VR+D+Q H+ SL S GRPGRVKR+ + AGG
Sbjct: 130 KQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYG-GGRPGRVKRRTLRKG--DGAGGD 186
Query: 192 DED 194
DE+
Sbjct: 187 DEE 189
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R+Y KT K PRRP+E RLD+EL+LVG +GLR KRE+WRV LS+IR AAR+LLTLDEK
Sbjct: 4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+FEG AL+RR+ R G+L+ ++ KLDYVLAL E FLERRLQT+V+K GLAKSIHHA
Sbjct: 64 DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKS 187
RVLI+Q+HIRVG+QIVN+PSF+VR+D+Q H+ +LTS ++KA+ AA+
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKAK--AAEGG 181
Query: 188 AGGADEDDE 196
G A+ED+E
Sbjct: 182 DGDAEEDEE 190
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLAKSIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK K + G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYG-GGRPGRVKRKNAKKGQGGAGAGD 189
Query: 192 DEDDE 196
DE+++
Sbjct: 190 DEEED 194
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLAKSIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK K + G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYG-GGRPGRVKRKNAKKGQGGAGAGD 189
Query: 192 DEDDE 196
DE+++
Sbjct: 190 DEEED 194
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLAKSIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK K + G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYG-GGRPGRVKRKNAKKGQGGAGAGD 189
Query: 192 DEDDE 196
DE+++
Sbjct: 190 DEEED 194
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLAKSIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK K + G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYG-GGRPGRVKRKNAKKGQGGAGAGD 189
Query: 192 DEDDE 196
DE+++
Sbjct: 190 DEEED 194
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 146/185 (78%), Gaps = 1/185 (0%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLAKSIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGA 191
+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK K + G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYG-GGRPGRVKRKNAKKGQGGAGAGD 189
Query: 192 DEDDE 196
DE+++
Sbjct: 190 DEEED 194
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/181 (63%), Positives = 144/181 (79%), Gaps = 1/181 (0%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
MV+ + KT+ PRRPYEK RLD EL+++G +GLR KRE+WRV+YAL++IR AAR+
Sbjct: 1 MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
Query: 61 LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
LLTLDEKD +R+F+G ALLRR+ R G+L+ ++ KLDYVL L +E FLERRLQT VFK GL
Sbjct: 61 LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120
Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
AKSIHHARVLI+Q+HIRV +Q+VNIPSF+VR+D+Q H+ SL S GRPGRVKRK
Sbjct: 121 AKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFG-GGRPGRVKRKNL 179
Query: 181 K 181
K
Sbjct: 180 K 180
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 138/171 (80%), Gaps = 1/171 (0%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R KT+K PRRP+E RLDAEL+L G +GLR K E+WRV LS+IR AAR+LLTLDEK
Sbjct: 6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 65
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+FEG A++RR+ R G+L+ ++ KLDYVLAL +E FLERRLQT VFK GLAKSIHHA
Sbjct: 66 DPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHA 125
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRK 178
RVLI Q+HIRVG+QIVN+PSF+VR+DAQ H+ +L+S GRPGR KRK
Sbjct: 126 RVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYG-GGRPGRCKRK 175
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3
SV=1
Length = 190
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 143/189 (75%), Gaps = 2/189 (1%)
Query: 7 YRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDE 66
Y N+ + +K PRRP+EKERLD E++L G +GLRCKRE+WRV LS++R AR LLTL E
Sbjct: 4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPE 63
Query: 67 KDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHH 126
PRR+ EG A++RR YG L+ ++KLDYVL+LTV LERRLQTVVFK GLAKS+HH
Sbjct: 64 NHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHH 123
Query: 127 ARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKK 186
+RVLI+Q+HI V +QIV IPSF+VRV +++H+ + S GRPGRVKR ++ AAKK
Sbjct: 124 SRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFG-NGRPGRVKR-VKRNAAKK 181
Query: 187 SAGGADEDD 195
+GG D+D+
Sbjct: 182 GSGGGDDDE 190
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 137/171 (80%), Gaps = 1/171 (0%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R KT+K PRRP+E RLDAEL+L G +GLR K E+WRV LS+IR AAR+LLTLDEK
Sbjct: 6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 65
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+FEG A++RR+ R G+L+ T+ KLDYVLAL +E FLERRLQT VFK GLAKSIHHA
Sbjct: 66 DPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHA 125
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRK 178
RVLI Q+HIRVG+QIVN+PSF+VR+D Q H+ +L+S GRPGR KRK
Sbjct: 126 RVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYG-GGRPGRCKRK 175
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/183 (61%), Positives = 139/183 (75%), Gaps = 3/183 (1%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R Y KT+ P+RPYE RLDAEL+L G FGL+ K+E++R+ + LS+IR AARDLLT DEK
Sbjct: 6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK 65
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+FEG AL+RR+ R G+L + KLDYVLAL VE FLERRLQT V+K GLAKS+HHA
Sbjct: 66 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA 125
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKS 187
RVLI Q+HI VG+QIVNIPSF+VR+D++ H+ + TS RPGRV R+ AA K
Sbjct: 126 RVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFG-GARPGRVARR--NAARKAE 182
Query: 188 AGG 190
A G
Sbjct: 183 ASG 185
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 226 bits (575), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 108/171 (63%), Positives = 134/171 (78%), Gaps = 1/171 (0%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R Y KT+ P+RPYE RLDAEL+L G FGL+ KRE++R+ + LS+IR AARDLLT DEK
Sbjct: 6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEK 65
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+FEG AL+RR+ R G+L + KLDYVLAL VE FLERRLQT V+K GLAKS+HHA
Sbjct: 66 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA 125
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRK 178
RVLI Q+HI VG+QIVNIPSF+VR+D++ H+ + TS RPGRV R+
Sbjct: 126 RVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFG-GARPGRVARR 175
>sp|Q25555|RS9_NAEFO 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1
Length = 186
Score = 216 bits (549), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 136/182 (74%)
Query: 1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
MV YR + K PRRP+EKER+D EL++ G +GL+ K+E+WR+QY L+R R AR
Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60
Query: 61 LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
LLTL E D +R FEG ALLRRM R GLL+ ++ +LDY+L+L E LERRLQTVV K GL
Sbjct: 61 LLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGL 120
Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
+KSIHHAR LI Q+HIRVG+Q VN+PSF+VRVD++ H+ +S S+L Q G+PGR+ RK
Sbjct: 121 SKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180
Query: 181 KA 182
K+
Sbjct: 181 KS 182
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 127/176 (72%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
RN+ T+K P+ PYE+ER DAEL+LVG FGL+ K+E+ RV Y L +R A+ +L D K
Sbjct: 6 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAK 65
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
DP+R+ EG ALLRR+ G+L QNKL++VLAL E+ LERRLQT+V++ G AKSIHHA
Sbjct: 66 DPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHA 125
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAA 183
RVLI+ K I+VG+Q+V++PSFLVRV+++ + ++ + LT GR KRK A
Sbjct: 126 RVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAG 181
>sp|Q29197|RS9_PIG 40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1
Length = 130
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 101/122 (82%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
KT+ PRRP+EK RLD EL+L+G +GLR KRE+WRV++ L++IR AAR+LLTLDEKDPRR
Sbjct: 9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 68
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+FEG ALLRR+ R G+L+ + KLDY+L L +E FLERRLQT VFK GLA SIHH RVLI
Sbjct: 69 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLI 128
Query: 132 KQ 133
+Q
Sbjct: 129 RQ 130
>sp|Q8TVC0|RS4_METKA 30S ribosomal protein S4 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps4 PE=3 SV=1
Length = 186
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ PR P+E ERL+ E +L+ +GLR K+ELWR Q L R R A++L+ DP
Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMA--RTDPEA 66
Query: 72 IFEGQALLRRMFRYGLLE--ATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARV 129
E +AL R+++ G+L+ + LD +L LTVE LERRLQT+V++ GLAK+ AR
Sbjct: 67 QREREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQ 126
Query: 130 LIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
L+ +HI +G +IV +PS+LV + + V S S L P R + + +
Sbjct: 127 LVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSPLKDEDHPIRCEARGE 177
>sp|Q8SRW6|RS9_ENCCU 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS9 PE=1 SV=1
Length = 184
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 95/148 (64%), Gaps = 11/148 (7%)
Query: 17 PRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRI-FEG 75
PR P+EKERL E +LVG +GL+ K ELW ++ ++ + AR LLT +P I G
Sbjct: 13 PRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPING 70
Query: 76 QALLRRMFRYGLL--------EATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
++LLRR+ +YG+L + N L+ VL LT+ +LERRLQ VF AGLAKS+HHA
Sbjct: 71 RSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHA 130
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQ 155
R+LI + I + QIV++P F+VR D +
Sbjct: 131 RLLIGGRCISIKDQIVDVPGFMVRADKE 158
>sp|A8A8W3|RS4_IGNH4 30S ribosomal protein S4 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps4 PE=3 SV=1
Length = 166
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 97/154 (62%), Gaps = 3/154 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K + P P+ KERL E++L+G +GLR KRE+W L R R+ AR+LL L + R
Sbjct: 9 KKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEV--R 66
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
E +ALL+R++ GL++ LD VL+LTV LERRLQTVV+K GLAKSI+HAR L+
Sbjct: 67 EKEEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLV 125
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSS 165
HI + + V P ++VR D + +G + TS
Sbjct: 126 THGHIAINGRRVTSPGYIVRRDEEELIGYAPTSP 159
>sp|Q6KZP7|RS4_PICTO 30S ribosomal protein S4 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps4
PE=3 SV=1
Length = 183
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 2/171 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLT-LDEKDPR 70
K + PR P+EK+R+DAE +L+ +GL+ KRELWR Q L+ R AR L L DP
Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPL 68
Query: 71 RIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVL 130
I + Q L+ ++ R LL LD VL+L +E LERRL+T+V+K LA ++ AR
Sbjct: 69 AIKQFQLLIGKLSRLNLL-GENATLDDVLSLNIEDILERRLETLVYKKNLALTMKQARQF 127
Query: 131 IKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQK 181
I HI+V ++V IPSF+V ++ + + TS T P R++ K
Sbjct: 128 ITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPFTDENHPLRMEMSGTK 178
>sp|A3DMQ4|RS4_STAMF 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps4 PE=3 SV=1
Length = 168
Score = 120 bits (300), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 101/160 (63%), Gaps = 7/160 (4%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ PR P+ KE L EL+L+G++GLR KRELWR Q + + R+ AR LL P+
Sbjct: 9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLA----APQE 64
Query: 72 IFEG--QALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARV 129
I E +ALL R++R GLL + L+ VL LTVE LERRLQT+V+K GLA++I+HAR
Sbjct: 65 IREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQ 123
Query: 130 LIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQT 169
LI HI + + + P ++V + ++ V + TS ++
Sbjct: 124 LIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPFKKS 163
>sp|A1RWT8|RS4_THEPD 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5)
GN=rps4 PE=3 SV=1
Length = 172
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KE L E++LVG +GLR KRELW + L IR AR LL L ++ R
Sbjct: 9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--R 66
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
I + L+ R+++ GLL + LD VL+LTV LERRLQT+V++ GLA +I HAR LI
Sbjct: 67 IKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPG 173
HI V + V P +LV D +N + S L + + G
Sbjct: 127 THGHIAVNSRRVRSPGYLVSRDEENFISYYEGSPLAKMAQGG 168
>sp|Q9HJD7|RS4_THEAC 30S ribosomal protein S4 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps4 PE=3 SV=1
Length = 199
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 9/193 (4%)
Query: 10 YGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDL---LTLDE 66
+ K + PR P+EKER+D E ++V +GL+ K+E+WR + LS IR+ ARDL L ++
Sbjct: 7 HHKKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTND 66
Query: 67 KDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHH 126
+ ++ E +++R+ RY LL + LD VL+LTVE+ L+RRLQT+VF+ LA S+
Sbjct: 67 VNAQKQLE--RMIKRLNRYKLL-SENATLDDVLSLTVENILDRRLQTIVFRKNLAISVRQ 123
Query: 127 ARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGR--VKRKAQKAAA 184
AR LI HI V + V +P LV ++ + S + P R + AQ++A
Sbjct: 124 ARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSPVANELHPIRQALLAPAQRSAE 183
Query: 185 -KKSAGGADEDDE 196
K+ G A E+ E
Sbjct: 184 MKEGQGEASEEGE 196
>sp|A0B9L2|RS4_METTP 30S ribosomal protein S4 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps4 PE=3 SV=1
Length = 183
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK-DPR 70
KT+ +PR+P+E +R+ E+ L+ ++GLR KRELW+ + L + R R LL + + R
Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEAR 68
Query: 71 RIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVL 130
E A++ R+ R+G+L+ + LD +L+L + LERRLQT V++ GLA +I AR
Sbjct: 69 ADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQF 127
Query: 131 IKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGR 174
I HI+V Q V +PS+LV+ + + S L + G P R
Sbjct: 128 ITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171
>sp|P54020|RS4_METJA 30S ribosomal protein S4 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps4 PE=3 SV=1
Length = 187
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R + KT++ P P+ KER++ E L +GLR KRE+W+ + L + R AR L++ ++
Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DR 63
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
+ E L + +YG+L+ LD VL+LTVE LERRLQT+VF+ GLA++ A
Sbjct: 64 TEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQA 123
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVK 176
R LI HI V ++V PS++V V+ ++ + + S P R K
Sbjct: 124 RQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>sp|B8GEG7|RS4_METPE 30S ribosomal protein S4 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=rps4 PE=3 SV=1
Length = 181
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 4/164 (2%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTL--DEKDP 69
K ++ P+RP+EK+R++ E R+V +GLR KRE+WR Q L R R AAR+LL D
Sbjct: 9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDE 68
Query: 70 RRI-FEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHAR 128
++I + + LL + R GLL + D VL+L ++ LERRLQT+V++ GLA+S AR
Sbjct: 69 QQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQAR 127
Query: 129 VLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRP 172
++ HI + + V+IPS+ V D + + TS LT G P
Sbjct: 128 QMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHP 171
>sp|A7IAH7|RS4_METB6 30S ribosomal protein S4 OS=Methanoregula boonei (strain 6A8)
GN=rps4 PE=3 SV=1
Length = 185
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTL-DEKDPR 70
K+++ P+RP+EK R++ E RLV +GLR KRE+W+ Q L + R AAR+LL L +
Sbjct: 9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQ 68
Query: 71 RIFEGQ--ALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHAR 128
+FE + L+ M R GLL + +D VLAL V + LERRLQT+V++ GLA+S AR
Sbjct: 69 TVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQAR 127
Query: 129 VLIKQKHIRVGRQIVNIPSFLV 150
L+ HI +G + V +P +LV
Sbjct: 128 QLVTHGHIAIGGRRVTVPGYLV 149
>sp|A2BK77|RS4_HYPBU 30S ribosomal protein S4 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=rps4 PE=3 SV=1
Length = 176
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K + P+ P+ KERL EL LVG +GLR KRELW+++ R+ AR LL L + R
Sbjct: 9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEV--R 66
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
E +ALL R+ G+L LD VL LT E FLERRLQT+V+K GLA++I+ AR LI
Sbjct: 67 EKEEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLI 125
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSS 165
HI + + + P +LV+ D ++ V + TS
Sbjct: 126 VHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSP 159
>sp|Q46GC8|RS4_METBF 30S ribosomal protein S4 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps4 PE=3 SV=1
Length = 216
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 11 GKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPR 70
K+F+ PR P+++ R+ +E++LV ++GLR KRE+W+ L R+ AR LL
Sbjct: 8 SKSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQE 67
Query: 71 RIFEG------QALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSI 124
R EG + +L ++ RYG++++ + +D +L+L E+ LERRLQT V + GLA+++
Sbjct: 68 RGLEGHQKTQSEEILAKLIRYGIIKSDAD-IDDILSLKTENILERRLQTQVLRLGLARTV 126
Query: 125 HHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGR 174
AR I HI + + +P LV + + H+G TS L P R
Sbjct: 127 VQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSPLVSESHPER 176
>sp|C3N8R6|RS4_SULIY 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|C3NMQ2|RS4_SULIN 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|C3MZ03|RS4_SULIM 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|C3MJP5|RS4_SULIL 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|C4KJ91|RS4_SULIK 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|C3N052|RS4_SULIA 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.16.27)
GN=rps4 PE=3 SV=1
Length = 181
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KER+ E L+G +GLR KRE+W Q + + R+ AR LL L + R
Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE-RA 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ E Q L+ ++ + GLL+ +D +L+LT + LERRLQT+V+K GLA + + AR LI
Sbjct: 68 VREKQ-LVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
HI V + V P ++V VD +N + +TSS
Sbjct: 127 IHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF 161
>sp|A2SSV9|RS4_METLZ 30S ribosomal protein S4 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps4 PE=3 SV=1
Length = 181
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDE---KD 68
K + P+R +EK R+++E L ++GLR KRE+WR L + R+ AR++L + +
Sbjct: 9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEA 68
Query: 69 PRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHAR 128
P+ I L+ + RYGLL +D +L+L VE LERRLQT+V++ GLA+S AR
Sbjct: 69 PKTIARRDELVGTLQRYGLL-GPDAAMDNILSLKVEDILERRLQTIVYRKGLARSPKQAR 127
Query: 129 VLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL 166
LI HI + Q V++PS++V + + + TSSL
Sbjct: 128 QLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSL 165
>sp|P39467|RS4_SULAC 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps4 PE=3 SV=3
Length = 176
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K + P P+ K L E L+G +GLR K+E+W Q + R+ AR LL L + R
Sbjct: 9 KKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAE-RN 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
I E Q L+++++R G+LE + LD +L+LT E++LERRLQT+V+K GLA++I+ AR LI
Sbjct: 68 IREKQ-LIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQT 169
HI + + V P ++V ++ + TS Q
Sbjct: 127 THGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQN 164
>sp|O28000|RS4_ARCFU 30S ribosomal protein S4 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps4 PE=3 SV=1
Length = 172
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 5/162 (3%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLT---LDEKD 68
K + P P++K RL+ E++LV +GLR KRELWR Q L + R ARDLL L K+
Sbjct: 9 KKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKE 68
Query: 69 PRRI-FEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
+ Q +++++ + G+L LD +L L+VE FLERRLQT+V++ GLA++I A
Sbjct: 69 GEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQA 127
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQT 169
R I HI V + V PSF+V + ++ + S L +T
Sbjct: 128 RQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSPLAKT 169
>sp|Q97B95|RS4_THEVO 30S ribosomal protein S4 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps4
PE=3 SV=1
Length = 200
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 10 YGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLT-LDEKD 68
+ K + PR P+EK+R+D E +++ +GL+ KRE+WR + LS IR+ AR L L D
Sbjct: 7 HHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASD 66
Query: 69 PRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHAR 128
+ + +++R+ RY +L + + LD VL+LTVE+ L+RRLQT+VFK LA S AR
Sbjct: 67 ANAQKQLERMIKRLSRYKIL-SDKATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQAR 125
Query: 129 VLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGR 174
LI HI V + V +P LV ++ + S + P R
Sbjct: 126 QLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSPIANELHPIR 171
>sp|A8MDS5|RS4_CALMQ 30S ribosomal protein S4 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rps4 PE=3
SV=1
Length = 181
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 8/157 (5%)
Query: 16 KPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEG 75
KP+R + + L +ELRL+G +GLR K+ELW + L I++ AR++L+ P I G
Sbjct: 15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILS----APMEI-RG 69
Query: 76 QA---LLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIK 132
+A L R+FR GL+ LD VLAL V + LERRLQT+V++ G+A+SIH AR LI
Sbjct: 70 EAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIV 129
Query: 133 QKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQT 169
HI + V P +LV + ++ +G + TS + +
Sbjct: 130 HGHISINGVRVRSPGYLVPRNLEDGIGFAPTSRIVKA 166
>sp|Q96YV8|RS4_SULTO 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1
Length = 177
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
+ ++ P P+ + L+ E L+G +GLR KRELW Q + + R+ AR LL L + R
Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--R 66
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ L+++++R G++E LD +L L E++LERRLQT+V+K GLA++I+ AR LI
Sbjct: 67 STREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLI 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQ 168
HI +G + V P ++V ++ + TS Q
Sbjct: 127 VHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQ 163
>sp|Q8PV18|RS4_METMA 30S ribosomal protein S4 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps4 PE=3 SV=1
Length = 219
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 11/174 (6%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTL------- 64
K+++ PR P+++ R+ AE++LV ++GLR K+E+W+ L R+ AR LL
Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQE 68
Query: 65 DEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSI 124
E + + + +L ++ RYG+++A N +D +L+L E+ LERRLQT V + GLA+++
Sbjct: 69 GELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTV 127
Query: 125 HHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL---TQTGRPGRV 175
AR I HI + + IP LV + + H+G +S L + + RP +V
Sbjct: 128 IQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSPLMSESHSERPVQV 181
>sp|A9A436|RS4_NITMS 30S ribosomal protein S4 OS=Nitrosopumilus maritimus (strain SCM1)
GN=rps4 PE=3 SV=1
Length = 201
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTL-----DE 66
+ ++KP+RP E EL+ +G+FGLR KRELW+ LSR+R+ AR LL L E
Sbjct: 9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLALRQEVRAE 68
Query: 67 KDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHH 126
K+P L++ + R GL+ ++ LD VL LT L RRLQT+V K K+ +
Sbjct: 69 KEP-------ILMKSLARIGLV-SSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQ 120
Query: 127 ARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKK 186
AR + HI +G + V+IPS+ V V+ +N + + S + Q K K++ A +
Sbjct: 121 ARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFAPESKIPQVLE----KTKSEAPAEET 176
Query: 187 SAGGADE 193
A+E
Sbjct: 177 VEAPAEE 183
>sp|Q9YB58|RS4_AERPE 30S ribosomal protein S4 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps4 PE=3
SV=2
Length = 171
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P+ P+ KERL+ E L+G +GLR K+ELW+ + R R+ AR LL L + R
Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRRE 68
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
+ L+ ++R GL++ +D VL + E LERRLQT+V+K GLAK+I+ AR L+
Sbjct: 69 A--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLV 126
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQ 168
HI + + V P +LV + + + + S +
Sbjct: 127 VHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPFKE 163
>sp|Q8TRR1|RS4_METAC 30S ribosomal protein S4 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4 PE=3 SV=1
Length = 218
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K+++ P+ P+++ R+ E++LV ++GLR K+E+W+ L R+ AR LL
Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEG 68
Query: 72 IFEG------QALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIH 125
EG + +L ++ RYG++++ N +D +L+L E+ LERRLQT V + GLA+++
Sbjct: 69 GLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVI 127
Query: 126 HARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGR 174
AR I HI + + IP LV + + H+G S L P R
Sbjct: 128 QARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSPLKNESHPER 176
>sp|B6YSQ1|RS4_THEON 30S ribosomal protein S4 OS=Thermococcus onnurineus (strain NA1)
GN=rps4 PE=3 SV=1
Length = 180
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 12 KTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRR 71
K ++ P P+ KERLD E L+ + L+ K+ELWR + L R AR LL K
Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE- 67
Query: 72 IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLI 131
E LL+R+ R GLL A LD VL+LTVE L+RRLQT+VFK GLA++I AR LI
Sbjct: 68 -IERAQLLQRLNRLGLLPA-DAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLI 125
Query: 132 KQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRV 175
HI V QI+ P +LV + ++ + S TS + P R+
Sbjct: 126 VHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPFAKESHPERM 169
>sp|A6UPW5|RS4_METVS 30S ribosomal protein S4 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps4 PE=3 SV=1
Length = 178
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Query: 8 RNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEK 67
R GK + P P+ ER+ E + +GL K+ELW+++ L R AR L++ +
Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DT 62
Query: 68 DPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHA 127
+ E L + RY +L + LD++L+L +ES LERRLQT+V++ GLAK+ A
Sbjct: 63 TTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQA 122
Query: 128 RVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRV 175
R LI HI V + V PS+LV V N +G S + P R
Sbjct: 123 RQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSPMALENHPERT 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,066,612
Number of Sequences: 539616
Number of extensions: 2411072
Number of successful extensions: 9235
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8070
Number of HSP's gapped (non-prelim): 1078
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)