Query 046291
Match_columns 197
No_of_seqs 243 out of 1460
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_J 40S ribosomal protein S 100.0 9.5E-65 3.2E-69 424.0 15.9 191 5-196 3-193 (197)
2 3iz6_C 40S ribosomal protein S 100.0 2.2E-64 7.5E-69 421.2 -11.1 191 5-196 3-195 (195)
3 2xzm_D Ribosomal protein S4 co 100.0 8.7E-58 3E-62 378.1 15.2 178 5-183 3-180 (181)
4 3j20_D 30S ribosomal protein S 100.0 5.1E-55 1.7E-59 361.2 13.9 174 5-181 2-175 (180)
5 2cqj_A BRMS2, U3 small nucleol 99.8 6.1E-21 2.1E-25 135.5 1.4 65 103-167 2-66 (71)
6 3bbn_D Ribosomal protein S4; s 99.7 3.2E-17 1.1E-21 137.3 3.4 93 54-164 50-142 (201)
7 3r8n_D 30S ribosomal protein S 99.6 6.3E-17 2.1E-21 135.9 2.6 100 31-158 45-144 (205)
8 2vqe_D 30S ribosomal protein S 99.6 9.5E-16 3.2E-20 128.8 5.6 113 18-158 35-148 (209)
9 1c05_A Ribosomal protein S4 de 99.6 1.6E-15 5.4E-20 122.4 5.2 56 103-158 45-100 (159)
10 3hp7_A Hemolysin, putative; st 99.1 8.5E-11 2.9E-15 102.8 5.2 61 108-170 6-69 (291)
11 1p9k_A ORF, hypothetical prote 98.9 7.9E-11 2.7E-15 84.0 -0.6 50 109-160 21-70 (79)
12 1dm9_A Hypothetical 15.5 KD pr 98.9 2.9E-09 1E-13 83.3 6.1 53 108-161 8-60 (133)
13 2k6p_A Uncharacterized protein 98.7 2.1E-09 7.3E-14 78.1 0.0 52 109-161 1-52 (92)
14 3dh3_A Ribosomal large subunit 98.2 1.2E-06 4E-11 76.5 5.1 50 108-159 6-55 (290)
15 1vio_A Ribosomal small subunit 98.2 1.1E-06 3.9E-11 73.9 4.7 50 108-158 2-51 (243)
16 1ksk_A Ribosomal small subunit 98.2 1.6E-06 5.3E-11 72.5 5.0 49 109-158 4-52 (234)
17 3j20_E 30S ribosomal protein S 97.9 1E-05 3.6E-10 69.2 4.8 42 117-158 52-93 (243)
18 1v9f_A Ribosomal large subunit 97.8 2.3E-06 7.8E-11 75.0 0.0 54 107-160 15-68 (325)
19 3kbg_A 30S ribosomal protein S 97.8 1.1E-05 3.7E-10 67.9 3.8 42 117-158 17-58 (213)
20 1h3f_A Tyrosyl-tRNA synthetase 96.9 0.0014 4.9E-08 59.9 6.2 45 110-154 370-414 (432)
21 2jan_A Tyrosyl-tRNA synthetase 96.7 0.00097 3.3E-08 61.2 3.7 44 110-153 357-400 (432)
22 1jil_A Tyrrs, tyrosyl-tRNA syn 96.6 0.0003 1E-08 64.2 0.0 46 109-154 353-398 (420)
23 2ts1_A Tyrosyl-tRNA synthetase 96.1 0.00099 3.4E-08 60.8 0.0 45 110-154 353-397 (419)
24 2ktl_A Tyrosyl-tRNA synthetase 96.0 0.0023 8E-08 51.7 2.0 35 111-145 52-86 (164)
25 3u5c_E RP5, S7, YS6, 40S ribos 92.9 0.07 2.4E-06 46.0 3.6 41 118-160 52-92 (261)
26 2xzm_W 40S ribosomal protein S 91.9 0.16 5.4E-06 43.7 4.5 43 117-161 51-95 (260)
27 3iz6_D 40S ribosomal protein S 91.2 0.072 2.5E-06 46.0 1.7 42 118-161 52-93 (265)
28 3rpf_C Molybdopterin convertin 45.6 12 0.0004 25.0 2.2 27 132-158 41-67 (74)
29 4egx_A Kinesin-like protein KI 44.7 12 0.0004 30.0 2.4 41 134-178 140-180 (184)
30 1fm0_D Molybdopterin convertin 43.5 38 0.0013 22.4 4.6 23 135-158 52-74 (81)
31 3dwg_C 9.5 kDa culture filtrat 37.0 23 0.00078 24.4 2.7 24 135-158 60-86 (93)
32 2q5w_D Molybdopterin convertin 33.9 33 0.0011 22.5 3.0 23 135-158 48-70 (77)
33 2g1e_A Hypothetical protein TA 32.8 21 0.0007 24.2 1.8 24 135-158 57-83 (90)
34 3po0_A Small archaeal modifier 30.6 33 0.0011 23.3 2.6 23 135-158 60-82 (89)
35 1vjk_A Molybdopterin convertin 28.9 27 0.00091 24.5 1.9 23 135-158 69-91 (98)
36 1rws_A Hypothetical protein PF 27.8 26 0.00088 23.6 1.6 22 135-157 48-69 (77)
37 4ejq_A Kinesin-like protein KI 27.6 30 0.001 26.5 2.2 40 134-177 110-149 (154)
38 2k5p_A THis protein, thiamine- 27.6 37 0.0013 23.2 2.5 23 136-158 37-62 (78)
39 1tyg_B YJBS; alpha beta barrel 27.3 44 0.0015 23.5 2.8 23 136-158 55-80 (87)
40 2cu3_A Unknown function protei 26.3 49 0.0017 21.3 2.8 24 135-158 31-57 (64)
41 1f0z_A THis protein; ubiquitin 24.5 34 0.0011 22.2 1.7 23 136-158 34-59 (66)
42 2kl0_A Putative thiamin biosyn 23.8 34 0.0012 23.1 1.6 23 136-158 33-58 (73)
43 3iz6_C 40S ribosomal protein S 23.2 36 0.0012 27.8 1.9 26 172-197 168-193 (195)
44 3uv0_A Mutator 2, isoform B; F 22.9 45 0.0015 24.6 2.2 21 132-154 60-80 (102)
45 1c05_A Ribosomal protein S4 de 21.4 37 0.0013 26.3 1.6 33 25-65 9-41 (159)
46 2l52_A Methanosarcina acetivor 21.2 35 0.0012 24.0 1.3 24 135-158 66-92 (99)
No 1
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=100.00 E-value=9.5e-65 Score=423.95 Aligned_cols=191 Identities=60% Similarity=0.974 Sum_probs=178.1
Q ss_pred CCcccccccccCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q 046291 5 SFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFR 84 (197)
Q Consensus 5 ~~~~~~~k~~~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (197)
++|++++|+|.||+|||+++++.+|.++|++|||+||+|||+|+++|++||++|+.|++|+++||+|++++++||++||+
T Consensus 3 ~~~~~~~k~~~tP~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~Ll~l~~~dp~r~~~~~~LL~kL~~ 82 (197)
T 3u5c_J 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR 82 (197)
T ss_dssp CCCCCCCCSCCCCSSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291 85 YGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS 164 (197)
Q Consensus 85 ~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s 164 (197)
|||+++++++|++|++|++++||++|||++|+++|||+||++|++||.||||+|||++|++|||.|.++++++|+|.+.|
T Consensus 83 ~Gil~~~~~~L~~v~~l~~~~~le~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~s 162 (197)
T 3u5c_J 83 VGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162 (197)
T ss_dssp HTSSCGGGCSSHHHHHCCHHHHHTTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSS
T ss_pred cCCCCCcccChhhhhcccHHHHHHHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCC
Confidence 99998778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCchhhhhhhhHHHhhhcCCCCCCCcC
Q 046291 165 SLTQTGRPGRVKRKAQKAAAKKSAGGADEDDE 196 (197)
Q Consensus 165 ~~vs~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 196 (197)
+|| .++||||+|||++++++++||++|+|||
T Consensus 163 pyv-s~~~gr~~rk~~~~~~~~~~~~~~~~~~ 193 (197)
T 3u5c_J 163 PFG-GARPGRVARRNAARKAEASGEAADEADE 193 (197)
T ss_dssp SSS-SSCCCHHHHHHHHHHHHHTCC-------
T ss_pred CCc-CCCchhHHHHHHHhhcccCCCCCccccc
Confidence 999 5699999999999987666655555544
No 2
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-64 Score=421.18 Aligned_cols=191 Identities=75% Similarity=1.167 Sum_probs=182.1
Q ss_pred CCcccccccc--cCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHH
Q 046291 5 SFYRNYGKTF--KKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRM 82 (197)
Q Consensus 5 ~~~~~~~k~~--~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL 82 (197)
++|+|++|+| +||+|||+++++.+|.+++++|||+||+|||+|+++|++||++|+.|++++++||++++++++||++|
T Consensus 3 ~~~~~~~k~~~~~~P~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~L~~l~e~d~~r~~~~~~lL~kL 82 (195)
T 3iz6_C 3 RAPRTYSKTYSTKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRM 82 (195)
T ss_dssp HHHHHHHHHHHSCCSSCCCCCSHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHSSSCHHHHHHHTCCCHHHHHHHHTCSS
T ss_pred CCcCCCCceeCCCCCCCchhHHhhHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence 4689999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEecc
Q 046291 83 FRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSL 162 (197)
Q Consensus 83 ~~~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~ 162 (197)
|++|+++++..+|++|++|++++||++|||++|+++|||+||++|++||.||||+|||++|++|||.|.++++++|+|.+
T Consensus 83 ~~~Gll~e~~~~Ld~vl~l~~~~~le~RLD~~L~r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~~ 162 (195)
T 3iz6_C 83 NRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSL 162 (195)
T ss_dssp STTSHHHHHHHTTCCEETTEECCCTTSCCCSSCCCCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSSS
T ss_pred HHcCCCCccccCHHHHHhhhHHHHHHhhhhHHHHhccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEecC
Confidence 99999987788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCchhhhhhhhHHHhhhcCCCCCCCcC
Q 046291 163 TSSLTQTGRPGRVKRKAQKAAAKKSAGGADEDDE 196 (197)
Q Consensus 163 ~s~~vs~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 196 (197)
.|+|| +++||||+|||++++++++++++|||||
T Consensus 163 ~spyv-~~~~gr~~rk~~~~~~~~~~~~~~~~~~ 195 (195)
T 3iz6_C 163 TSPFG-GGPPGRVKRKNQKKASGGGGDGEEEDEE 195 (195)
T ss_dssp CCCCC-CCCCCHHHHHHHHTTTSSSSCCCCCCCC
T ss_pred CCCCC-CCCchhHHHHHHhhccCCCCCccccccC
Confidence 99999 8999999999999987766666555543
No 3
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=100.00 E-value=8.7e-58 Score=378.09 Aligned_cols=178 Identities=61% Similarity=1.026 Sum_probs=173.3
Q ss_pred CCcccccccccCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q 046291 5 SFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFR 84 (197)
Q Consensus 5 ~~~~~~~k~~~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (197)
++|++++|+|+||+|||+++++++|.+++++|||+||+|||+|+++|++||++|+.|++|+++||+|++++++||+||++
T Consensus 3 ~~~~~~~k~~~~p~~~w~~~~~~~E~~l~~~YgL~nk~e~w~~~~~~~~iR~~ar~L~~l~~~d~~r~~~~~~ll~kl~~ 82 (181)
T 2xzm_D 3 KTYINTSKTYSTPRRPYEKERLDNEMKLIGTFGLKNKREVWRVQMILAKFRKAARELLTLDPKDPRRLFEGSALLRRMFK 82 (181)
T ss_dssp CCCSCCCCCCCCCSSTTCHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCCccccccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291 85 YGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS 164 (197)
Q Consensus 85 ~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s 164 (197)
||++.+++++|+++++|++++||++|||++|++.||+.||++|++||.||||+|||++|++|||.|.+++++.|+|.+++
T Consensus 83 ~g~~~~~kqkl~~~~gl~~~~~le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~~s 162 (181)
T 2xzm_D 83 YGLLSEQERKLDYVLGLTIHKLMERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFASTS 162 (181)
T ss_dssp TTSSCTTCCSTHHHHSCCHHHHHTTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECTTST
T ss_pred hccccchhhhHHHHhCcCcchhhccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEeCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999998899998999
Q ss_pred CcccCCCchhhhhhhhHHH
Q 046291 165 SLTQTGRPGRVKRKAQKAA 183 (197)
Q Consensus 165 ~~vs~~~~~r~~~~~~~~~ 183 (197)
+|+ +++||||+|||++++
T Consensus 163 ~~~-~~~~~r~~~~~~~~~ 180 (181)
T 2xzm_D 163 PLG-GGREGRTKRKNAKKS 180 (181)
T ss_dssp TTT-TCCSHHHHHHHHHC-
T ss_pred ccC-CCCCchhhhhhhccC
Confidence 999 889999999998864
No 4
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.1e-55 Score=361.16 Aligned_cols=174 Identities=39% Similarity=0.594 Sum_probs=161.6
Q ss_pred CCcccccccccCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q 046291 5 SFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFR 84 (197)
Q Consensus 5 ~~~~~~~k~~~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (197)
++|++++|+|.||+|||+++++.+|.+++++|||+||+|||+|+++|++||++|+.|++++++| +..++++||++||+
T Consensus 2 g~p~~~~k~~~~p~~pw~~~r~~~E~kl~~~YgL~nk~e~wk~~~~l~~~r~~Ar~L~~l~~~d--~~~~~~~LL~kL~~ 79 (180)
T 3j20_D 2 GDPKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQ--AEIEREQLLARLKR 79 (180)
T ss_dssp -------CCCCCCSSSSCHHHHHHHHHHHHHHTCSCTHHHHHHHHHHHHHHHHHHHHHHSCTTS--CTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCchhhhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999 45699999999999
Q ss_pred hcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291 85 YGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS 164 (197)
Q Consensus 85 ~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s 164 (197)
||||++ +.+|++|++|++++||++|||++|+++|||+||++|++||.||||+|||++|++|||.|.+++++.|+|.+.|
T Consensus 80 ~Gll~~-~~~L~~vl~l~~~~~le~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s 158 (180)
T 3j20_D 80 LGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTS 158 (180)
T ss_dssp HTSSSS-CCCSHHHHTCCHHHHHHTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCS
T ss_pred cCCCCC-CCCHHHHhccchHhhhhhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCC
Confidence 999995 8999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CcccCCCchhhhhhhhH
Q 046291 165 SLTQTGRPGRVKRKAQK 181 (197)
Q Consensus 165 ~~vs~~~~~r~~~~~~~ 181 (197)
+|+++.||+|..+.+++
T Consensus 159 ~i~~~~~~~~~~~~~~~ 175 (180)
T 3j20_D 159 PFANPQHPERMMIEKAK 175 (180)
T ss_dssp SSSSSCCHHHHHHHHCC
T ss_pred cccCCCCCcchhHHHHh
Confidence 99999999999987655
No 5
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-21 Score=135.53 Aligned_cols=65 Identities=31% Similarity=0.464 Sum_probs=61.6
Q ss_pred hHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCCCcc
Q 046291 103 VESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLT 167 (197)
Q Consensus 103 ~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s~~v 167 (197)
+++||++|||.+|+++|||+||++|++||.||||+|||++|++|||.|.+++++.|+|.+++++.
T Consensus 2 ~~~~l~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~~~~~ 66 (71)
T 2cqj_A 2 SSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS 66 (71)
T ss_dssp CSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC
T ss_pred HHHHHHHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEECCceec
Confidence 56899999999999999999999999999999999999999999999999777899999988876
No 6
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.65 E-value=3.2e-17 Score=137.26 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHhcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHc
Q 046291 54 IRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQ 133 (197)
Q Consensus 54 iR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~ 133 (197)
-.+.++..+++.++++.+.+..+. ...|..++ ++.++||+|||.+|++.||+.||++|++||.|
T Consensus 50 ekqkl~~~yGl~e~q~~~~~~~a~-----~~~g~tg~-----------~ll~~Le~RLD~~L~r~g~a~SR~~ArqLI~~ 113 (201)
T 3bbn_D 50 EKQKLRFHYGITERQLLKYVRIAR-----KAKGSTGQ-----------VLLQLLEMRLDNILFRLGMAPTIPGARQLVNH 113 (201)
T ss_dssp THHHHHHHHTCCHHHHHHHHHHHH-----HSSSCTTT-----------TTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH-----hccCCcHH-----------HHHHHHHHHHHHHHHHcCCcCCHHHHHHHHhC
Confidence 355667777888777766666664 33455432 35599999999999999999999999999999
Q ss_pred CCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291 134 KHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS 164 (197)
Q Consensus 134 G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s 164 (197)
|||+|||++|++||+.|.++|+ |++...+
T Consensus 114 G~V~VNG~~V~~pS~~V~~gD~--I~V~~~~ 142 (201)
T 3bbn_D 114 RHILVNGRIVDIPSYRCKPQDT--IMARDEQ 142 (201)
T ss_dssp TCEEETTEECCCTTCBCCTTEE--EEECSST
T ss_pred CcEEeCCEEEeecceecCCCCE--EEEcccc
Confidence 9999999999999999999974 5554433
No 7
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=99.63 E-value=6.3e-17 Score=135.88 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=84.6
Q ss_pred HHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHhcchhhhhcchhHHhhhhhHHHHHhh
Q 046291 31 RLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERR 110 (197)
Q Consensus 31 ~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~~Gli~~~~~~L~~~~~l~~~~~lerR 110 (197)
..+..||++-.+ ++.++..+++.|+++.+.+..+. ...|..++ ++..+|++|
T Consensus 45 ~K~S~y~~qL~e------------KQklr~~YG~~EkQf~~~~~~A~-----~~kG~tg~-----------~ll~lle~R 96 (205)
T 3r8n_D 45 PRLSDYGVQLRE------------KQKVRRIYGVLERQFRNYYKEAA-----RLKGNTGE-----------NLLALLEGR 96 (205)
T ss_dssp CCCCHHHHHHHH------------HHHHHHHHTCCHHHHHHHHHHHH-----HSSSCHHH-----------HHHHHHHTB
T ss_pred CcccHHHHHHHH------------HHHHHHHhCCCHHHHHHHHHHHH-----hcCCCcHH-----------HHHHhhHhh
Confidence 357888887444 67889999999999888888775 34566542 356799999
Q ss_pred hhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 111 LQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 111 LD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
||.+|++.||+.||.+|++||.||||+|||++|++||+.|.++|.+.|
T Consensus 97 LD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V 144 (205)
T 3r8n_D 97 LDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 144 (205)
T ss_dssp TTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBC
T ss_pred HHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEe
Confidence 999999999999999999999999999999999999999999975443
No 8
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=99.58 E-value=9.5e-16 Score=128.80 Aligned_cols=113 Identities=29% Similarity=0.508 Sum_probs=88.3
Q ss_pred CCCCccccchHHH-HHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHhcchhhhhcchh
Q 046291 18 RRPYEKERLDAEL-RLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLD 96 (197)
Q Consensus 18 ~~pw~~~~~~~E~-~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~~Gli~~~~~~L~ 96 (197)
++||.+..+..-. +.+..||++-.+ ++.++..+++.++++.+.+..+. ...|..++
T Consensus 35 ~~~~~pg~h~~~~~~k~s~y~~~L~e------------kqkl~~~Yg~~e~q~~~y~~~a~-----~~~g~t~~------ 91 (209)
T 2vqe_D 35 RRPYPPGQHGQKRARRPSDYAVRLRE------------KQKLRRIYGISERQFRNLFEEAS-----KKKGVTGS------ 91 (209)
T ss_dssp GCCSCSSTTTTSCCCCCCHHHHHHHH------------HHHHHHHHTCCHHHHHHHHHHHH-----HSSSCHHH------
T ss_pred cCCCCCCCCCCCCCCcccHHHHHHHH------------HHHHHHHhCccHHHHHHHHHHHH-----HccCCcch------
Confidence 5566666655322 367888887443 55778889999888777666654 44566542
Q ss_pred HHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 97 YVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 97 ~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
++..++++|||.+|++.||+.||.+|+++|.||||.|||++|++||+.|.++|++.|
T Consensus 92 -----~l~~~le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V 148 (209)
T 2vqe_D 92 -----VFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAV 148 (209)
T ss_dssp -----HHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEE
T ss_pred -----HHHHhHHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEE
Confidence 235788999999999999999999999999999999999999999999999985444
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=99.57 E-value=1.6e-15 Score=122.39 Aligned_cols=56 Identities=38% Similarity=0.555 Sum_probs=52.0
Q ss_pred hHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 103 VESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 103 ~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
+..+|++|||.+|++.|++.||++|+++|.||+|+|||++|++|++.|.++|.+.|
T Consensus 45 ~~~~le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V 100 (159)
T 1c05_A 45 FMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAV 100 (159)
T ss_dssp HHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEE
Confidence 55789999999999999999999999999999999999999999999999975444
No 10
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.07 E-value=8.5e-11 Score=102.81 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=54.2
Q ss_pred HhhhhhhHhhhccccCHHHHHHHHHcCCeeeCC-E-EeccCceeeecCCeeeEEeccC-CCcccCC
Q 046291 108 ERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGR-Q-IVNIPSFLVRVDAQNHVGVSLT-SSLTQTG 170 (197)
Q Consensus 108 erRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng-~-~V~kPs~~V~~~de~~I~~~~~-s~~vs~~ 170 (197)
.+|||.+|++.|++.||++|+++|.+|+|+||| + ++++|++.|.++++ |++... .+|||++
T Consensus 6 ~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~--I~v~g~~~~yvsrg 69 (291)
T 3hp7_A 6 KERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTE--LKLKGEKLRYVSRG 69 (291)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCC--EEETTCCCCSSSTT
T ss_pred hhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCE--EEEcccccccccch
Confidence 479999999999999999999999999999999 8 89999999999975 455433 5799986
No 11
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.93 E-value=7.9e-11 Score=83.97 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=46.5
Q ss_pred hhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEe
Q 046291 109 RRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGV 160 (197)
Q Consensus 109 rRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~ 160 (197)
+|||.+|...|++.||++|+++|.+|.|+|||+++++|++.|.++| .|++
T Consensus 21 ~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd--~I~v 70 (79)
T 1p9k_A 21 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ--TVSF 70 (79)
T ss_dssp CCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSE--EEEE
T ss_pred chHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCC--EEEE
Confidence 7999999999999999999999999999999999999999999886 4554
No 12
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.86 E-value=2.9e-09 Score=83.31 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=48.5
Q ss_pred HhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEec
Q 046291 108 ERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVS 161 (197)
Q Consensus 108 erRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~ 161 (197)
.+|||.+|+..+++.|++.|+.+|.+|+|+|||+++ +|++.|.+||++.|.+.
T Consensus 8 ~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 (133)
T ss_dssp CCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEET
T ss_pred chhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeC
Confidence 379999999998888999999999999999999997 89999999998777653
No 13
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.68 E-value=2.1e-09 Score=78.14 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=47.0
Q ss_pred hhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEec
Q 046291 109 RRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVS 161 (197)
Q Consensus 109 rRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~ 161 (197)
+|||.+|...+++.|+++|+++|.+|.|+|||+++ +|++.|.+||++.|.+.
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~ 52 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYL 52 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCS
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeC
Confidence 58999999999888999999999999999999998 89999999987666553
No 14
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.20 E-value=1.2e-06 Score=76.50 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=45.3
Q ss_pred HhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEE
Q 046291 108 ERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVG 159 (197)
Q Consensus 108 erRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~ 159 (197)
.+|||.+|...|++ ||.+|+++|.+|.|+|||+++ .|++.|.++|.+.|.
T Consensus 6 g~RLdk~La~~g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 6 SVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVN 55 (290)
T ss_dssp CEEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEET
T ss_pred chHHHHHHHhCCCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEec
Confidence 37999999999988 999999999999999999999 899999999765553
No 15
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=98.19 E-value=1.1e-06 Score=73.91 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=44.7
Q ss_pred HhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 108 ERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 108 erRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
.+|||.+|...+ .-|+++|+++|.+|.|+|||+++++|++.|.++|++.|
T Consensus 2 ~~RLd~~L~~~~-~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v 51 (243)
T 1vio_A 2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYF 51 (243)
T ss_dssp CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEE
T ss_pred CccHHHHHHHcC-CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEE
Confidence 479999999987 56999999999999999999999999999999985443
No 16
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=98.16 E-value=1.6e-06 Score=72.51 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=44.1
Q ss_pred hhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 109 RRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 109 rRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
+|||.+|...+ .-|++.|+++|.+|.|+|||+++++|++.|.++|.+.|
T Consensus 4 ~RLd~~L~~~~-~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v 52 (234)
T 1ksk_A 4 MRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY 52 (234)
T ss_dssp EEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEE
T ss_pred ccHHHHHHHcC-CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEE
Confidence 59999999986 55999999999999999999999999999999975544
No 17
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.88 E-value=1e-05 Score=69.24 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=38.1
Q ss_pred hhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 117 KAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 117 ~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
++|+|.|+.+|++++.||+|.|||+++++|+|.|.-.|.+.|
T Consensus 52 rLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI 93 (243)
T 3j20_E 52 YLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSI 93 (243)
T ss_dssp TSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEE
T ss_pred hhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEe
Confidence 369999999999999999999999999999999988875444
No 18
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=97.84 E-value=2.3e-06 Score=75.04 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEe
Q 046291 107 LERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGV 160 (197)
Q Consensus 107 lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~ 160 (197)
-.+|||.+|...+..-|+++|+++|.+|.|+|||++|.+|++.|.++|.+.|.+
T Consensus 15 ~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 68 (325)
T 1v9f_A 15 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEec
Confidence 357999999998867799999999999999999999889999999998766643
No 19
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=97.82 E-value=1.1e-05 Score=67.92 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred hhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 117 KAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 117 ~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
++|+|.|+.+|++++.||+|.|||+++++|+|.|...|.+.|
T Consensus 17 rLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 468999999999999999999999999999999998876555
No 20
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.86 E-value=0.0014 Score=59.94 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=41.2
Q ss_pred hhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCC
Q 046291 110 RLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDA 154 (197)
Q Consensus 110 RLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~d 154 (197)
.|-.+|+..|++.|.++|+++|.+|-|+|||++|++|.+.+..++
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 466778999999999999999999999999999999999998764
No 21
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.68 E-value=0.00097 Score=61.17 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=40.5
Q ss_pred hhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecC
Q 046291 110 RLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVD 153 (197)
Q Consensus 110 RLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~ 153 (197)
.|-.+|+..|++.|.++||++|.+|-|+|||++|++|.+.+..+
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~ 400 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSS 400 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChh
Confidence 46677899999999999999999999999999999999988765
No 22
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.64 E-value=0.0003 Score=64.19 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCC
Q 046291 109 RRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDA 154 (197)
Q Consensus 109 rRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~d 154 (197)
..|..+|+..|++.|..+|+++|.+|-|+|||++|+.|.+.+.+++
T Consensus 353 i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~d 398 (420)
T 1jil_A 353 TNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPED 398 (420)
T ss_dssp ----------------------------------------------
T ss_pred ccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccc
Confidence 3688899999999999999999999999999999999999888764
No 23
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.07 E-value=0.00099 Score=60.82 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCC
Q 046291 110 RLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDA 154 (197)
Q Consensus 110 RLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~d 154 (197)
.|-.+|+..|++.|.++||++|.+|-|+|||++|+.|.+.+..++
T Consensus 353 ~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 397 (419)
T 2ts1_A 353 PLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEH 397 (419)
T ss_dssp ---------------------------------------------
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhh
Confidence 577788999999999999999999999999999999999887653
No 24
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=96.03 E-value=0.0023 Score=51.72 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.4
Q ss_pred hhhhHhhhccccCHHHHHHHHHcCCeeeCCEEecc
Q 046291 111 LQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNI 145 (197)
Q Consensus 111 LD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~k 145 (197)
|-.+|+..||+.|..+||++|.+|-|+|||..+.+
T Consensus 52 ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~~ 86 (164)
T 2ktl_A 52 FSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGVK 86 (164)
T ss_dssp HHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSCC
T ss_pred HHHHHHHhCcccCHHHHHHHHHhCCEEECCEeccc
Confidence 55668899999999999999999999999988754
No 25
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=92.92 E-value=0.07 Score=45.96 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=36.1
Q ss_pred hccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEe
Q 046291 118 AGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGV 160 (197)
Q Consensus 118 ~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~ 160 (197)
+++|.|..+|+..+.+|.|.|||++.+++.|.|.-=| .|++
T Consensus 52 LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MD--VIsI 92 (261)
T 3u5c_E 52 LKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMD--VITL 92 (261)
T ss_dssp TCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTC--EEEE
T ss_pred hcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEE--EEEE
Confidence 6899999999999999999999999999999986655 4444
No 26
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=91.86 E-value=0.16 Score=43.73 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=36.4
Q ss_pred hhccccCHHHHHHHHHc--CCeeeCCEEeccCceeeecCCeeeEEec
Q 046291 117 KAGLAKSIHHARVLIKQ--KHIRVGRQIVNIPSFLVRVDAQNHVGVS 161 (197)
Q Consensus 117 ~~gla~Sr~~Ar~lI~~--G~V~Vng~~V~kPs~~V~~~de~~I~~~ 161 (197)
.+++|.|..+|+..|.+ |.|.|||++.+++.|.|.-=| .|++.
T Consensus 51 ~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MD--VIsI~ 95 (260)
T 2xzm_W 51 RLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMD--VVRIE 95 (260)
T ss_dssp TTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTC--EEEEG
T ss_pred hhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEE--EEeEc
Confidence 36889999999999999 999999999999999986555 44543
No 27
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.23 E-value=0.072 Score=45.99 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=36.0
Q ss_pred hccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEec
Q 046291 118 AGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVS 161 (197)
Q Consensus 118 ~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~ 161 (197)
+++|.|..+|+..+.+|.|.|||++.+++.|.|.-=| .|++.
T Consensus 52 LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MD--VIsI~ 93 (265)
T 3iz6_D 52 LKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD--VISIP 93 (265)
T ss_dssp HTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTC--EEECC
T ss_pred hcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEE--EEEEc
Confidence 6899999999999999999999999999999885544 45553
No 28
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=45.59 E-value=12 Score=25.03 Aligned_cols=27 Identities=4% Similarity=-0.017 Sum_probs=21.4
Q ss_pred HcCCeeeCCEEeccCceeeecCCeeeE
Q 046291 132 KQKHIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 132 ~~G~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
..-.|.||++.|..+...+.++|++.|
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDGDVISL 67 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTTCEEEE
T ss_pred hccEEEECCEEcCCCCcCCCCCCEEEE
Confidence 345689999997788999999986544
No 29
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=44.72 E-value=12 Score=30.01 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCeeeCCEEeccCceeeecCCeeeEEeccCCCcccCCCchhhhhh
Q 046291 134 KHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRK 178 (197)
Q Consensus 134 G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s~~vs~~~~~r~~~~ 178 (197)
..++|||..|+.| ..+..|| .|.|....-|. =.+|...++.
T Consensus 140 a~t~VNG~~I~~~-~~L~~GD--rI~lG~~h~Fr-fn~P~ea~~~ 180 (184)
T 4egx_A 140 ADTYVNGKKVTEP-SILRSGN--RIIMGKSHVFR-FNHPEQARQE 180 (184)
T ss_dssp CCEEETTEECCSC-EECCTTC--EEEETTTEEEE-EECHHHHHHC
T ss_pred CeEEEcCEEcccc-EEcCCCC--EEEECCCCEEE-ECChHHHHHh
Confidence 3689999999877 5677886 56666655454 4578766543
No 30
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=43.53 E-value=38 Score=22.41 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.5
Q ss_pred CeeeCCEEeccCceeeecCCeeeE
Q 046291 135 HIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
.|.|||+.+. +...+..+|++.|
T Consensus 52 ~v~vN~~~v~-~~~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVS-FDHPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECC-TTCBCCTTCEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEE
Confidence 3889999986 7889999986544
No 31
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=36.99 E-value=23 Score=24.43 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.2
Q ss_pred CeeeCCEEecc---CceeeecCCeeeE
Q 046291 135 HIRVGRQIVNI---PSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~k---Ps~~V~~~de~~I 158 (197)
.|.||++.+.. +.+.+..+|++.|
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 48899999975 7888999986544
No 32
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=33.87 E-value=33 Score=22.52 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.3
Q ss_pred CeeeCCEEeccCceeeecCCeeeE
Q 046291 135 HIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
.|.|||+.+. ++..+..+|++.|
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEE
T ss_pred EEEECCEECC-CCCCcCCCCEEEE
Confidence 5899999986 5788999986544
No 33
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=32.78 E-value=21 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=19.1
Q ss_pred CeeeCCEEecc---CceeeecCCeeeE
Q 046291 135 HIRVGRQIVNI---PSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~k---Ps~~V~~~de~~I 158 (197)
.|.|||+.+.. +.+.+..+|++.|
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 48999999874 7888999986544
No 34
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=30.58 E-value=33 Score=23.29 Aligned_cols=23 Identities=0% Similarity=-0.110 Sum_probs=18.6
Q ss_pred CeeeCCEEeccCceeeecCCeeeE
Q 046291 135 HIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
.|.|||+.+. +.+.+.++|++.|
T Consensus 60 ~v~VN~~~v~-~~~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAA-LGEATAAGDELAL 82 (89)
T ss_dssp EEEETTEECC-TTSBCCTTCEEEE
T ss_pred EEEECCEECC-CCcccCCCCEEEE
Confidence 5889999986 6888999986544
No 35
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=28.89 E-value=27 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=18.6
Q ss_pred CeeeCCEEeccCceeeecCCeeeE
Q 046291 135 HIRVGRQIVNIPSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~kPs~~V~~~de~~I 158 (197)
.|.|||+.+. +.+.+..+|++.|
T Consensus 69 ~v~VNg~~v~-~~~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEE
Confidence 3899999986 6889999986544
No 36
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=27.83 E-value=26 Score=23.60 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=17.3
Q ss_pred CeeeCCEEeccCceeeecCCeee
Q 046291 135 HIRVGRQIVNIPSFLVRVDAQNH 157 (197)
Q Consensus 135 ~V~Vng~~V~kPs~~V~~~de~~ 157 (197)
.|.|||+.|. ++..+..+|++.
T Consensus 48 ~VavNg~~v~-~~~~L~dGD~V~ 69 (77)
T 1rws_A 48 IAKVNGKVVL-EDDEVKDGDFVE 69 (77)
T ss_dssp CEEETTEEEC-SSSCCCSSCCCB
T ss_pred EEEECCEECC-CCCCcCCCCEEE
Confidence 4899999996 568888887543
No 37
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=27.62 E-value=30 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCeeeCCEEeccCceeeecCCeeeEEeccCCCcccCCCchhhhh
Q 046291 134 KHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKR 177 (197)
Q Consensus 134 G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s~~vs~~~~~r~~~ 177 (197)
.-++|||+.|+.| ..+..||. |.|....-|. =.+|...++
T Consensus 110 ngt~VNG~~i~~~-~~L~~GD~--I~~G~~~~Fr-f~~P~~a~~ 149 (154)
T 4ejq_A 110 ADTYVNGKKVTEP-SILRSGNR--IIMGKSHVFR-FNHPEQARQ 149 (154)
T ss_dssp CCEEETTEECCSC-EECCTTCE--EEETTTEEEE-EECHHHHHH
T ss_pred CceEECCEEcCCc-eECCCCCE--EEECCcEEEE-EcChHHhhh
Confidence 3589999999765 56788874 5655544344 346765543
No 38
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=27.62 E-value=37 Score=23.20 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=17.9
Q ss_pred eeeCCEEeccC---ceeeecCCeeeE
Q 046291 136 IRVGRQIVNIP---SFLVRVDAQNHV 158 (197)
Q Consensus 136 V~Vng~~V~kP---s~~V~~~de~~I 158 (197)
|.|||.+|.+. ++.+..+|.+.|
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 88999999876 568888875444
No 39
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.31 E-value=44 Score=23.52 Aligned_cols=23 Identities=4% Similarity=0.060 Sum_probs=17.6
Q ss_pred eeeCCEEeccC---ceeeecCCeeeE
Q 046291 136 IRVGRQIVNIP---SFLVRVDAQNHV 158 (197)
Q Consensus 136 V~Vng~~V~kP---s~~V~~~de~~I 158 (197)
|.|||++|... .+.+..+|++.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 88999999765 467888876544
No 40
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=26.29 E-value=49 Score=21.25 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=17.9
Q ss_pred CeeeCCEEeccC---ceeeecCCeeeE
Q 046291 135 HIRVGRQIVNIP---SFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~kP---s~~V~~~de~~I 158 (197)
.|.||++.|... .+.+..+|++.|
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEE
Confidence 388999999753 478888876544
No 41
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=24.45 E-value=34 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=17.6
Q ss_pred eeeCCEEeccC---ceeeecCCeeeE
Q 046291 136 IRVGRQIVNIP---SFLVRVDAQNHV 158 (197)
Q Consensus 136 V~Vng~~V~kP---s~~V~~~de~~I 158 (197)
|.||++.|... .+.+..+|++.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 88999999753 577888876544
No 42
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=23.75 E-value=34 Score=23.05 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=18.2
Q ss_pred eeeCCEEeccC---ceeeecCCeeeE
Q 046291 136 IRVGRQIVNIP---SFLVRVDAQNHV 158 (197)
Q Consensus 136 V~Vng~~V~kP---s~~V~~~de~~I 158 (197)
|.|||.+|.+. ++.+..+|.+.|
T Consensus 33 V~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 88999999876 568889875544
No 43
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.24 E-value=36 Score=27.80 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=21.2
Q ss_pred chhhhhhhhHHHhhhcCCCCCCCcCC
Q 046291 172 PGRVKRKAQKAAAKKSAGGADEDDED 197 (197)
Q Consensus 172 ~~r~~~~~~~~~~~~~~~~~~~~~~~ 197 (197)
.|+-.|.+.+++.++++++++++|||
T Consensus 168 ~~~~gr~~rk~~~~~~~~~~~~~~~~ 193 (195)
T 3iz6_C 168 GGPPGRVKRKNQKKASGGGGDGEEED 193 (195)
T ss_dssp CCCCCHHHHHHHHTTTSSSSCCCCCC
T ss_pred CCCchhHHHHHHhhccCCCCCccccc
Confidence 57888888887777788999988886
No 44
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=22.92 E-value=45 Score=24.61 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=15.1
Q ss_pred HcCCeeeCCEEeccCceeeecCC
Q 046291 132 KQKHIRVGRQIVNIPSFLVRVDA 154 (197)
Q Consensus 132 ~~G~V~Vng~~V~kPs~~V~~~d 154 (197)
..|.|+|||+.+ -...+..+|
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gD 80 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMEN 80 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGG
T ss_pred ccCcEEECCEEe--eeEEccCCc
Confidence 458999999999 344555554
No 45
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=21.40 E-value=37 Score=26.30 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=24.7
Q ss_pred cchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 046291 25 RLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLD 65 (197)
Q Consensus 25 ~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~ 65 (197)
++..+.++...|||.. +++.++.+.|+.+.+.+
T Consensus 9 ~l~~kqk~~~~yg~~e--------~q~~~~~~~a~~~~g~~ 41 (159)
T 1c05_A 9 QLQEKQKLRHMYGVNE--------RQFRKTFEEAGKMPGKH 41 (159)
T ss_dssp HHHHHHHHHHTTTCCH--------HHHHHHHHHHTTSSSTH
T ss_pred HHHHHHHHHHHhCCCH--------HHHHHHHHHHHhccCCh
Confidence 5677788999999983 45777777887776643
No 46
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=21.16 E-value=35 Score=24.04 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=18.6
Q ss_pred CeeeCCEEec---cCceeeecCCeeeE
Q 046291 135 HIRVGRQIVN---IPSFLVRVDAQNHV 158 (197)
Q Consensus 135 ~V~Vng~~V~---kPs~~V~~~de~~I 158 (197)
.|.|||+.|. .+.+.+..+|++.|
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEE
Confidence 4899999985 57888988876444
Done!