BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046292
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 117/194 (60%), Gaps = 11/194 (5%)
Query: 7 ADNWKELSGNNNWDGLLNPLNINLRRYIIHYGERVQAIYDSFNGEITSKMYGFPRYAPEN 66
A W++LSG N+W G L PL+ +LR YIIHYGE QA YD+FN S+ G Y+ ++
Sbjct: 20 AKRWRDLSGQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSRKD 79
Query: 67 FFSNVALQNGNPY-KYIVTDYLYARSDTDFLEWLL---------PDQSAWIGYVAVATDE 116
FF+ V L+ +PY KY VT ++YA SD E L +S W GYVAV D+
Sbjct: 80 FFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGWSKESNWXGYVAVTDDQ 139
Query: 117 GKAVLGRRDILISWRGTQSAAEWFKDIEFSLTAASDIFEDTYGPTPEVHSGFHSLYVKSD 176
G A+LGRRDI++SWRG+ EW +D EF L A IF + ++H G++S+Y D
Sbjct: 140 GTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFGERNDQV-QIHQGWYSIYXSQD 198
Query: 177 SASTYNKSSAKDQV 190
S + K++A+DQV
Sbjct: 199 ERSPFTKTNARDQV 212
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 126 ILISWRGTQSAAEWFKDIEFSLTAASDIFEDTYGPTPEVHSGFHS 170
I++S+RG++S W ++ F L +DI G H GF S
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEINDICSGCRG-----HDGFTS 115
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 126 ILISWRGTQSAAEWFKDIEFSLTAASDIFEDTYGPTPEVHSGFHS 170
I++S+RG++S W ++ F L +DI G H GF S
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEINDICSGCRG-----HDGFTS 115
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 109 YVAVATDEGKAVLGRRDILISWRGTQSAAEWFKDIEFSLTAASDIF 154
+V V TDEGK + +I G ++A +E+ LT + DIF
Sbjct: 118 HVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLT-SDDIF 162
>pdb|2D0K|A Chain A, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
pdb|2D0K|B Chain B, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
Length = 159
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ AA D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAAAGDVPE 90
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 52 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 91
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph And
The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With With
Folate And Nicotinamide Adenine Dinucleotide Phosphate
(Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And 2'-monophosphoadenosine 5'-
Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism For
Ligand Dissociation
Length = 159
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 45 YDSFNGEITSKMYGFPRYAPENFFSNVALQNGNPYKYIVTDYLYARSDTDFLEWLL 100
YD F+ +YG +YA E F + N Y + T +LY + +F++ ++
Sbjct: 118 YDEFHNPAPINIYGASKYAGEQFVKELH----NKYFIVRTSWLYGKYGNNFVKTMI 169
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 GKAVLGRRDILISWR-GTQSAAEWFKDIEFSLTAASDIFE 155
G+ + GR++I++S + GT W K ++ ++ A D+ E
Sbjct: 51 GRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPE 90
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 27.3 bits (59), Expect = 6.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 5 SIADNWKELS---GNNNWDGLLNPLNINLRRYIIHYGERVQAIYD 46
S NW ++ G NNW +NP + + + YGE V+ D
Sbjct: 480 SYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRETGD 524
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 16/52 (30%)
Query: 123 RRDILISWRGTQSAAEWFKDIEF-----SLTAASDIFEDTYGPTPEVHSGFH 169
R++I++S+RG+ + W +++F SLT+ VHSGF
Sbjct: 72 RKEIVVSFRGSINIRNWLTNLDFDQDDCSLTSGCG-----------VHSGFQ 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,606,692
Number of Sequences: 62578
Number of extensions: 283495
Number of successful extensions: 640
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 18
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)