BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046294
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1GZY6|SYD_UNCTG Aspartate--tRNA ligase OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=aspS PE=3 SV=1
Length = 584
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 29 YGVEYDVRVINGFTNNSSLALVIWCSSEEGD----MGGRALQAGDDYGWRLRTK---IWG 81
Y EY++RV N S L+++ + EE +G L+ G + G + K +W
Sbjct: 369 YFKEYEIRVFISKLNAKSGDLIVFLADEEKTVAQGLGALRLKVGRESGLIDKNKFNFLW- 427
Query: 82 TTDFMCTMKWDQKRRR----FHAFKVPRDS 107
DF M+WD++ +R H F +P+D+
Sbjct: 428 VVDFPL-MEWDKEEQRWQALHHPFTLPKDA 456
>sp|Q6BP09|TCTP_DEBHA Translationally-controlled tumor protein homolog OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DEHA2E17468g PE=3 SV=1
Length = 167
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 17 IIFMSVLQPQHFYGVEYDVRVINGF----------TNNSSLALVIWCSSEEGDMGGRALQ 66
IIF V+ YDV++++ NN + + S+EE GG L+
Sbjct: 2 IIFTDVISGDELLSDAYDVKLVDDVVYEADCAMVNVNNGDVDIGANPSAEE---GGEDLE 58
Query: 67 AGDD------YGWRLRTKIWGTTDFMCTMKWDQKRRRFH-AFKVPR 105
G + Y +RL+ + FM MK KR + H A K P
Sbjct: 59 DGTETVNNVVYSFRLQQTSFDKKSFMTYMKGYMKRVKAHLAEKNPE 104
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 53 CSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAF 101
C S++ +G + G + T WGTT FMCT++ + +F
Sbjct: 40 CYSKDDVLGPHIIPIGGHFLDYFGTNFWGTTRFMCTLRQGPNYIHYQSF 88
>sp|Q6EDY6|LR16A_MOUSE Leucine-rich repeat-containing protein 16A OS=Mus musculus
GN=Lrrc16a PE=1 SV=2
Length = 1374
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 37 VINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIW 80
+IN +N+SL V + GDMG + L +LRT IW
Sbjct: 567 IINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIW 610
>sp|Q5VZK9|LR16A_HUMAN Leucine-rich repeat-containing protein 16A OS=Homo sapiens
GN=LRRC16A PE=1 SV=1
Length = 1371
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 37 VINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIW 80
+IN +N+SL V + GDMG + L +LRT IW
Sbjct: 563 IINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIW 606
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus
GN=Notch3 PE=2 SV=2
Length = 2319
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 12 CLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAG 68
C + + + P H G E R GFT N V WCS GGR +Q G
Sbjct: 968 CFSRPCLHGGICNPTH-SGFECTCR--EGFTGNQCQNPVDWCSQAPCQNGGRCVQTG 1021
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,575,328
Number of Sequences: 539616
Number of extensions: 2185596
Number of successful extensions: 4763
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4760
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)