Query 046294
Match_columns 141
No_of_seqs 104 out of 362
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05938 Self-incomp_S1: Plant 100.0 4.7E-37 1E-41 214.6 14.7 106 33-140 1-109 (110)
2 TIGR02376 Cu_nitrite_red nitri 92.9 0.38 8.3E-06 39.2 6.6 62 28-89 64-126 (311)
3 PF07732 Cu-oxidase_3: Multico 89.1 1 2.3E-05 31.4 4.9 60 28-89 31-99 (117)
4 PLN02604 oxidoreductase 76.3 7.7 0.00017 34.2 6.0 75 28-103 60-145 (566)
5 TIGR03388 ascorbase L-ascorbat 75.3 9.6 0.00021 33.4 6.3 75 28-103 37-122 (541)
6 PF13473 Cupredoxin_1: Cupredo 73.1 6.3 0.00014 26.4 3.8 55 29-91 41-96 (104)
7 PF04202 Mfp-3: Foot protein 3 72.9 1.1 2.4E-05 28.5 -0.0 25 1-26 1-25 (71)
8 PRK10965 multicopper oxidase; 68.3 15 0.00034 32.1 6.0 50 28-79 82-134 (523)
9 PRK02710 plastocyanin; Provisi 68.2 23 0.00051 24.5 5.9 26 64-91 83-108 (119)
10 PRK10883 FtsI repressor; Provi 67.5 18 0.00039 31.2 6.1 49 28-78 82-133 (471)
11 TIGR01480 copper_res_A copper- 67.2 15 0.00032 32.7 5.7 60 28-89 81-146 (587)
12 PLN02191 L-ascorbate oxidase 62.7 19 0.00042 31.9 5.5 73 28-101 59-142 (574)
13 TIGR03096 nitroso_cyanin nitro 61.6 36 0.00078 24.6 5.9 30 63-92 94-123 (135)
14 TIGR03389 laccase laccase, pla 59.8 25 0.00054 30.8 5.7 75 27-103 38-123 (539)
15 TIGR03390 ascorbOXfungal L-asc 58.3 26 0.00057 30.7 5.6 62 28-90 44-115 (538)
16 PLN02168 copper ion binding / 57.1 39 0.00085 29.8 6.5 75 28-104 62-147 (545)
17 PF13157 DUF3992: Protein of u 56.2 51 0.0011 22.3 5.5 43 33-77 28-70 (92)
18 PLN02354 copper ion binding / 55.5 29 0.00064 30.6 5.4 72 28-103 63-147 (552)
19 PLN02792 oxidoreductase 53.4 34 0.00074 30.1 5.5 73 27-103 51-136 (536)
20 PLN02835 oxidoreductase 52.2 50 0.0011 29.1 6.3 73 28-102 65-148 (539)
21 PLN00044 multi-copper oxidase- 52.1 49 0.0011 29.6 6.3 74 28-103 65-149 (596)
22 TIGR01480 copper_res_A copper- 50.5 37 0.0008 30.3 5.3 61 28-90 504-573 (587)
23 PLN02991 oxidoreductase 46.2 50 0.0011 29.2 5.4 74 28-103 64-148 (543)
24 TIGR02656 cyanin_plasto plasto 46.1 20 0.00043 23.9 2.3 24 64-89 63-86 (99)
25 TIGR03102 halo_cynanin halocya 43.9 1.1E+02 0.0024 21.3 6.4 57 31-94 48-107 (115)
26 PF10880 DUF2673: Protein of u 43.6 3.8 8.2E-05 25.3 -1.4 18 1-18 1-18 (65)
27 PF12561 TagA: ToxR activated 42.8 76 0.0016 23.0 5.0 42 81-125 38-82 (135)
28 PF06369 Anemone_cytotox: Sea 33.4 1.4E+02 0.003 22.6 5.2 47 31-78 29-76 (176)
29 PF11523 DUF3223: Protein of u 32.5 31 0.00067 22.2 1.5 13 114-126 55-67 (76)
30 cd05751 Ig1_LILRB1_like First 32.0 1.4E+02 0.003 19.1 4.7 15 42-58 14-28 (91)
31 TIGR02657 amicyanin amicyanin. 30.2 1.4E+02 0.0031 18.9 4.5 57 31-91 17-74 (83)
32 PF00127 Copper-bind: Copper b 29.9 64 0.0014 21.3 2.8 24 64-89 63-86 (99)
33 PF11781 RRN7: RNA polymerase 29.4 54 0.0012 18.1 1.9 20 108-128 9-28 (36)
34 PF01666 DX: DX module; Inter 26.8 1.8E+02 0.0039 18.7 6.5 58 70-129 17-75 (76)
35 PRK05461 apaG CO2+/MG2+ efflux 25.8 2.3E+02 0.005 20.1 5.2 42 31-74 31-85 (127)
36 PF12751 Vac7: Vacuolar segreg 22.2 1.5E+02 0.0033 25.2 4.2 21 35-55 336-356 (387)
37 KOG1263 Multicopper oxidases [ 21.1 3.7E+02 0.0079 24.1 6.5 74 30-105 66-150 (563)
38 cd01203 DOK_PTB Downstream of 21.0 2.9E+02 0.0064 19.1 4.8 43 97-140 3-46 (104)
No 1
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=100.00 E-value=4.7e-37 Score=214.58 Aligned_cols=106 Identities=35% Similarity=0.834 Sum_probs=96.6
Q ss_pred EEEEEEecCCCCCcceEEEEeeeCCCCCCcEEeCCCCeEEEEEeeCCCCcceEEEEEEeCCe--eEEEEEEeeCCCCcCC
Q 046294 33 YDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQK--RRRFHAFKVPRDSLRC 110 (141)
Q Consensus 33 ~~V~I~N~L~~~~~~~L~vhC~S~d~DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~~~--~~~f~~y~~~~d~~~C 110 (141)
++|+|+|+|+++. .|.|||+|+|+|||.|.|+||++|+|+|+++++++|+|+|+|+|.+. +++|+||+++++..+|
T Consensus 1 ~~V~I~N~L~~~~--~L~vhC~S~d~Dlg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~~~~~~~~f~vy~~~~~~~~c 78 (110)
T PF05938_consen 1 NHVVIINNLGPGK--ILTVHCKSKDDDLGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWPGGKYHHSFDVYRSSRDSRRC 78 (110)
T ss_pred CEEEEEECCCCCC--eEEEEeeCCCccCCCEECCCCCEEEEEEecCcCCceeEEEEEEECCccEEEEEEEEeccccccCC
Confidence 4899999998886 89999999999999999999999999999999999999999999654 7899999999997776
Q ss_pred CCCceeEEEEecCeEEecCCCC-CceEEeec
Q 046294 111 NLFRKCSWLVKEDGFYFSNDEV-NWKKDFSW 140 (141)
Q Consensus 111 ~~~~~c~W~~~~dGiY~~~~~~-~~~k~y~W 140 (141)
..++.|.|+||+||||+.++.. +|+++|+|
T Consensus 79 ~c~~~c~W~ir~dGiy~~~~~~~~~~~~y~W 109 (110)
T PF05938_consen 79 RCGQTCNWSIREDGIYFSNNKNKPWKKCYPW 109 (110)
T ss_pred CCCcEEEEEEECCEeEEEcCCCccCcEEeCC
Confidence 4346799999999999999876 56999999
No 2
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=92.94 E-value=0.38 Score=39.16 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeCCCC-CCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEGD-MGGRALQAGDDYGWRLRTKIWGTTDFMCTM 89 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~D-lG~~~l~~g~~~~f~F~~~~~~~T~f~C~f 89 (141)
-.|..+.|+++|.+++.....+.+|-....++ -+...++||+++.++|...-.|+-.|.|+.
T Consensus 64 ~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~ 126 (311)
T TIGR02376 64 HEGDYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAP 126 (311)
T ss_pred ECCCEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCC
Confidence 34567889999998532123677886543333 344558999999999998877877888994
No 3
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=89.07 E-value=1 Score=31.36 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=41.9
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeCCCC--------CCcEEeCCCCeEEEEEeeCC-CCcceEEEEE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEGD--------MGGRALQAGDDYGWRLRTKI-WGTTDFMCTM 89 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~D--------lG~~~l~~g~~~~f~F~~~~-~~~T~f~C~f 89 (141)
-.+.++.|++.|.|... ..|..|=-....+ .....+.||+++.++|..+- .|+=-|.|+.
T Consensus 31 ~~Gd~v~i~~~N~l~~~--~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~ 99 (117)
T PF07732_consen 31 REGDTVRITVTNNLDEP--TSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHV 99 (117)
T ss_dssp ETTEEEEEEEEEESSSG--BSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECS
T ss_pred EcCCeeEEEEEeccccc--cccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCC
Confidence 45678899999999765 3788886553322 22345899999999999886 5544555654
No 4
>PLN02604 oxidoreductase
Probab=76.27 E-value=7.7 Score=34.22 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=48.2
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC------CCCCC--cEEeCCCCeEEEEEeeCCCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE------EGDMG--GRALQAGDDYGWRLRTKIWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~------d~DlG--~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|..+.|+++|.|.+.. ..+..|=-.. |.--| ...++||+++.++|..+-.|+.-|.|+.... +-..
T Consensus 60 ~~Gd~v~v~v~N~l~~~~-~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G 138 (566)
T PLN02604 60 QQGDTVIVELKNSLLTEN-VAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYG 138 (566)
T ss_pred ECCCEEEEEEEeCCCCCC-CCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeE
Confidence 455677899999985321 2566665431 22112 2358999999999998777887888987543 1234
Q ss_pred EEEEEee
Q 046294 97 RFHAFKV 103 (141)
Q Consensus 97 ~f~~y~~ 103 (141)
-+.|..+
T Consensus 139 ~liV~~~ 145 (566)
T PLN02604 139 SIRVSLP 145 (566)
T ss_pred EEEEEec
Confidence 5555543
No 5
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=75.32 E-value=9.6 Score=33.39 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=48.2
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC------CCCCC--cEEeCCCCeEEEEEeeCCCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE------EGDMG--GRALQAGDDYGWRLRTKIWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~------d~DlG--~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|..+.|.+.|.|.+.. ..+..|=-.. |..-| ...++||++|.+.|..+--|+--|.|+.... +-..
T Consensus 37 ~~Gd~v~v~v~N~l~~~~-t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G 115 (541)
T TIGR03388 37 QAGDTIVVELTNKLHTEG-VVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYG 115 (541)
T ss_pred EcCCEEEEEEEECCCCCC-ccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceE
Confidence 455778899999997432 2455444321 22222 2348999999999998777877888986442 1235
Q ss_pred EEEEEee
Q 046294 97 RFHAFKV 103 (141)
Q Consensus 97 ~f~~y~~ 103 (141)
-+.|..+
T Consensus 116 ~liV~~~ 122 (541)
T TIGR03388 116 SLIVDVP 122 (541)
T ss_pred EEEEecC
Confidence 6666654
No 6
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=73.10 E-value=6.3 Score=26.41 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=31.1
Q ss_pred ccceEEEEEEecCCCCCcceEEEEeeeCCCCCCc-EEeCCCCeEEEEEeeCCCCcceEEEEEEe
Q 046294 29 YGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGG-RALQAGDDYGWRLRTKIWGTTDFMCTMKW 91 (141)
Q Consensus 29 ~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~DlG~-~~l~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (141)
.|.+++|.+.|. +.. . |.-.-++ ++. ..|+||++..+.|.+.-.|+=.|.|.+..
T Consensus 41 ~G~~v~l~~~N~-~~~---~---h~~~i~~-~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 41 AGQPVTLTFTNN-DSR---P---HEFVIPD-LGISKVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp TTCEEEEEEEE--SSS-------EEEEEGG-GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred CCCeEEEEEEEC-CCC---c---EEEEECC-CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 344577888886 211 1 3332222 554 56899999999998877787789998654
No 7
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=72.89 E-value=1.1 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=15.8
Q ss_pred CceeeEeeehHHHHHHhhhhhhcCCc
Q 046294 1 MKTLNSILLIFCLAIGIIFMSVLQPQ 26 (141)
Q Consensus 1 m~~l~~~l~v~~~~~~i~~~~~~~~~ 26 (141)
||+||+-+|+..+.+++ +|+.++|.
T Consensus 1 mnn~Si~VLlaLvLIg~-fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGS-FAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHHHHhh-heeeecCc
Confidence 99999988775553333 34445554
No 8
>PRK10965 multicopper oxidase; Provisional
Probab=68.29 E-value=15 Score=32.09 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=33.4
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeCC--CCCC-cEEeCCCCeEEEEEeeCC
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSEE--GDMG-GRALQAGDDYGWRLRTKI 79 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d--~DlG-~~~l~~g~~~~f~F~~~~ 79 (141)
-.|..+.|+++|.|+... .|..|=-... -|=+ ...++||++|.++|..+-
T Consensus 82 ~~Gd~v~v~~~N~L~~~t--tiHwHGl~~~~~~DG~pq~~I~PG~s~~Y~f~~~q 134 (523)
T PRK10965 82 QRGKAVTVDITNQLPEET--TLHWHGLEVPGEVDGGPQGIIAPGGKRTVTFTVDQ 134 (523)
T ss_pred ECCCEEEEEEEECCCCCc--cEEcccccCCCccCCCCCCCCCCCCEEEEEeccCC
Confidence 445678899999998653 5555543322 1211 345899999999998763
No 9
>PRK02710 plastocyanin; Provisional
Probab=68.18 E-value=23 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=21.8
Q ss_pred EeCCCCeEEEEEeeCCCCcceEEEEEEe
Q 046294 64 ALQAGDDYGWRLRTKIWGTTDFMCTMKW 91 (141)
Q Consensus 64 ~l~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (141)
.+.||+++++.|.+ -|+-.|+|....
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~~H~ 108 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCEPHR 108 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcCCCc
Confidence 47899999999998 488899999544
No 10
>PRK10883 FtsI repressor; Provisional
Probab=67.47 E-value=18 Score=31.21 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=31.9
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeee--CC-CCCCcEEeCCCCeEEEEEeeC
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSS--EE-GDMGGRALQAGDDYGWRLRTK 78 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S--~d-~DlG~~~l~~g~~~~f~F~~~ 78 (141)
-.|....|.+.|.|+... .|..|=-- .. +|--...++||++|.+.|..+
T Consensus 82 ~~Gd~v~v~v~N~L~~~t--tiHwHGl~~~~~~~~g~~~~I~PG~~~~y~f~~~ 133 (471)
T PRK10883 82 WKGDDVKLIYSNRLTEPV--SMTVSGLQVPGPLMGGPARMMSPNADWAPVLPIR 133 (471)
T ss_pred ECCCEEEEEEEeCCCCCC--ceeECCccCCCCCCCCccccCCCCCeEEEEEecC
Confidence 445778899999998653 45554322 11 221133479999999999754
No 11
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=67.20 E-value=15 Score=32.72 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=40.0
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC----CC--CCCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE----EG--DMGGRALQAGDDYGWRLRTKIWGTTDFMCTM 89 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~----d~--DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f 89 (141)
-.|..+.|++.|.|+... .|..|=-.. |. ++....++||++|.++|...--|+--|.|+.
T Consensus 81 ~~Gd~v~v~v~N~l~~~t--siHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~ 146 (587)
T TIGR01480 81 REGDTVRLRVTNTLPEDT--SIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHS 146 (587)
T ss_pred ECCCEEEEEEEcCCCCCc--eEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCc
Confidence 456778899999998753 566554332 21 1223458999999999997655654555665
No 12
>PLN02191 L-ascorbate oxidase
Probab=62.67 E-value=19 Score=31.88 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=46.3
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC------CCCCC--cEEeCCCCeEEEEEeeCCCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE------EGDMG--GRALQAGDDYGWRLRTKIWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~------d~DlG--~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|....|++.|.|.... ..|..|=-.. |.--| ..-++||++|.++|..+-.|+--|.|+.... +-..
T Consensus 59 ~~Gd~v~v~v~N~l~~~~-tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G 137 (574)
T PLN02191 59 VAGDTIVVHLTNKLTTEG-LVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYG 137 (574)
T ss_pred EcCCEEEEEEEECCCCCC-ccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEE
Confidence 445677899999997431 2444444332 11122 2348999999999998777877777887543 2245
Q ss_pred EEEEE
Q 046294 97 RFHAF 101 (141)
Q Consensus 97 ~f~~y 101 (141)
-+.|.
T Consensus 138 ~liV~ 142 (574)
T PLN02191 138 SLIVD 142 (574)
T ss_pred EEEEc
Confidence 66665
No 13
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=61.63 E-value=36 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEeCCCCeEEEEEeeCCCCcceEEEEEEeC
Q 046294 63 RALQAGDDYGWRLRTKIWGTTDFMCTMKWD 92 (141)
Q Consensus 63 ~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~ 92 (141)
..|+||++..++|...-.|+=.|.|.+.-.
T Consensus 94 ~~I~pGet~TitF~adKpG~Y~y~C~~HP~ 123 (135)
T TIGR03096 94 EVIKAGETKTISFKADKAGAFTIWCQLHPK 123 (135)
T ss_pred eEECCCCeEEEEEECCCCEEEEEeCCCCCh
Confidence 347999999999998888888999998643
No 14
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=59.84 E-value=25 Score=30.77 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=47.3
Q ss_pred ccccceEEEEEEecCCCCCcceEEEEeeeCC----CC--CCcE--EeCCCCeEEEEEee-CCCCcceEEEEEEeC--Cee
Q 046294 27 HFYGVEYDVRVINGFTNNSSLALVIWCSSEE----GD--MGGR--ALQAGDDYGWRLRT-KIWGTTDFMCTMKWD--QKR 95 (141)
Q Consensus 27 ~~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d----~D--lG~~--~l~~g~~~~f~F~~-~~~~~T~f~C~f~w~--~~~ 95 (141)
.-.|..+.|.+.|+|+... .|..|=-... .| -|.. -++||++|.++|.. +--|+--|.|+.... +-.
T Consensus 38 ~~~GD~v~v~v~N~l~~~t--siHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~ 115 (539)
T TIGR03389 38 AREGDTVIVNVTNNVQYNV--TIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVY 115 (539)
T ss_pred EEcCCEEEEEEEeCCCCCe--eEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhccce
Confidence 3456778899999998653 5555553311 12 1211 37899999999996 356776777887542 223
Q ss_pred EEEEEEee
Q 046294 96 RRFHAFKV 103 (141)
Q Consensus 96 ~~f~~y~~ 103 (141)
.-+.|..+
T Consensus 116 G~lIV~~~ 123 (539)
T TIGR03389 116 GAIVILPK 123 (539)
T ss_pred EEEEEcCC
Confidence 45666643
No 15
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=58.32 E-value=26 Score=30.69 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=38.8
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeee------CCCCCCcE--EeCCCCeEEEEEeeC--CCCcceEEEEEE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSS------EEGDMGGR--ALQAGDDYGWRLRTK--IWGTTDFMCTMK 90 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S------~d~DlG~~--~l~~g~~~~f~F~~~--~~~~T~f~C~f~ 90 (141)
-.|....|+++|.|.+.. ..|..|=-. .|..-|.. -++||++|.+.|... -.|+--|.|+..
T Consensus 44 ~~GD~v~V~v~N~L~~~~-ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~ 115 (538)
T TIGR03390 44 QEGQTTWIRVYNDIPDNN-VTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVG 115 (538)
T ss_pred eCCCEEEEEEEECCCCCC-ceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCc
Confidence 456778899999997432 244444432 12223322 379999999999853 456656667663
No 16
>PLN02168 copper ion binding / pectinesterase
Probab=57.11 E-value=39 Score=29.83 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=46.7
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC------CCCCCc-EEeCCCCeEEEEEeeC-CCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE------EGDMGG-RALQAGDDYGWRLRTK-IWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~------d~DlG~-~~l~~g~~~~f~F~~~-~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|....|.++|.|+.+. .|.-|=-.. |.-.|. .-++||++|.++|... --|+--|.+++... +-..
T Consensus 62 ~~GD~v~V~v~N~L~~~t--tiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G 139 (545)
T PLN02168 62 TANDVINVNIFNNLTEPF--LMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYG 139 (545)
T ss_pred ECCCEEEEEEEeCCCCCc--cEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCccee
Confidence 445667799999998653 566664321 221232 2389999999999974 56765555666543 2245
Q ss_pred EEEEEeeC
Q 046294 97 RFHAFKVP 104 (141)
Q Consensus 97 ~f~~y~~~ 104 (141)
-+.|..+.
T Consensus 140 ~lII~~~~ 147 (545)
T PLN02168 140 AIRIYNPE 147 (545)
T ss_pred EEEEcCCc
Confidence 67776543
No 17
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=56.15 E-value=51 Score=22.27 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=32.7
Q ss_pred EEEEEEecCCCCCcceEEEEeeeCCCCCCcEEeCCCCeEEEEEee
Q 046294 33 YDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRT 77 (141)
Q Consensus 33 ~~V~I~N~L~~~~~~~L~vhC~S~d~DlG~~~l~~g~~~~f~F~~ 77 (141)
-++.++|+-+++. .+.|.=-+.........+.||++-+|.+++
T Consensus 28 gTi~V~n~~~~~~--~itV~i~~~g~~v~tftV~pG~S~S~T~~~ 70 (92)
T PF13157_consen 28 GTIYVYNDTGSGN--PITVTILQNGTAVNTFTVQPGNSRSFTVRD 70 (92)
T ss_pred EEEEEEECCCCCC--CEEEEEEECCcEEeEEEECCCceEEEEecc
Confidence 3788999988775 455554466666777789999999998775
No 18
>PLN02354 copper ion binding / oxidoreductase
Probab=55.51 E-value=29 Score=30.60 Aligned_cols=72 Identities=10% Similarity=0.168 Sum_probs=44.6
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeee--------CCCCCCc-EEeCCCCeEEEEEee-CCCCcceEEEEEEeCC---e
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSS--------EEGDMGG-RALQAGDDYGWRLRT-KIWGTTDFMCTMKWDQ---K 94 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S--------~d~DlG~-~~l~~g~~~~f~F~~-~~~~~T~f~C~f~w~~---~ 94 (141)
-.|....|+++|.|+.+ ..+|-.- .|.--|. --++||++|.++|.. +-.|+.-|.++..+.. -
T Consensus 63 ~~GD~v~V~v~N~l~~~----ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 63 TSNNNIVINVFNNLDEP----FLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred eCCCEEEEEEEECCCCC----cccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 35567789999999754 4455443 1221232 228999999999996 3567656666665531 2
Q ss_pred eEEEEEEee
Q 046294 95 RRRFHAFKV 103 (141)
Q Consensus 95 ~~~f~~y~~ 103 (141)
..-+.|..+
T Consensus 139 ~G~lII~~~ 147 (552)
T PLN02354 139 FGGLRVNSR 147 (552)
T ss_pred cceEEEcCC
Confidence 356666644
No 19
>PLN02792 oxidoreductase
Probab=53.42 E-value=34 Score=30.11 Aligned_cols=73 Identities=11% Similarity=0.262 Sum_probs=46.3
Q ss_pred ccccceEEEEEEecCCCCCcceEEEEeee--------CCCCCCc-EEeCCCCeEEEEEeeC-CCCcceEEEEEEeC---C
Q 046294 27 HFYGVEYDVRVINGFTNNSSLALVIWCSS--------EEGDMGG-RALQAGDDYGWRLRTK-IWGTTDFMCTMKWD---Q 93 (141)
Q Consensus 27 ~~~~~~~~V~I~N~L~~~~~~~L~vhC~S--------~d~DlG~-~~l~~g~~~~f~F~~~-~~~~T~f~C~f~w~---~ 93 (141)
.-.|....|.++|.|..+ ..||--- .|.-.|. --++||++|.++|... --|+--|.++..+. +
T Consensus 51 ~~~GD~v~V~v~N~L~~~----ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~G 126 (536)
T PLN02792 51 SLTNDNLVINVHNDLDEP----FLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAG 126 (536)
T ss_pred EECCCEEEEEEEeCCCCC----cCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcc
Confidence 345677889999999864 4555443 2222231 2389999999999963 56765666777654 2
Q ss_pred eeEEEEEEee
Q 046294 94 KRRRFHAFKV 103 (141)
Q Consensus 94 ~~~~f~~y~~ 103 (141)
-+.-+.|...
T Consensus 127 l~G~liI~~~ 136 (536)
T PLN02792 127 GYGSLRIYSL 136 (536)
T ss_pred cccceEEeCC
Confidence 2456666653
No 20
>PLN02835 oxidoreductase
Probab=52.20 E-value=50 Score=29.09 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=43.8
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeee------CCCCCCcE-EeCCCCeEEEEEee-CCCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSS------EEGDMGGR-ALQAGDDYGWRLRT-KIWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S------~d~DlG~~-~l~~g~~~~f~F~~-~~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|..+.|.++|.|.... .|.-|=-. .|.-.|.+ -++||++|.++|.. +-.|+--|.++..+. +-..
T Consensus 65 ~~GD~v~v~v~N~L~~~t--tiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G 142 (539)
T PLN02835 65 VTNDNIILNLINKLDQPF--LLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFG 142 (539)
T ss_pred ECCCEEEEEEEeCCCCCC--cEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccc
Confidence 455778899999998653 45544321 12222322 28999999999985 345654555665442 1234
Q ss_pred EEEEEe
Q 046294 97 RFHAFK 102 (141)
Q Consensus 97 ~f~~y~ 102 (141)
-+.|..
T Consensus 143 ~lIV~~ 148 (539)
T PLN02835 143 AINVYE 148 (539)
T ss_pred eeEEeC
Confidence 666664
No 21
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=52.06 E-value=49 Score=29.62 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=44.3
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeee------CCCCCCcE-EeCCCCeEEEEEeeC-CCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSS------EEGDMGGR-ALQAGDDYGWRLRTK-IWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S------~d~DlG~~-~l~~g~~~~f~F~~~-~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|..+.|+++|.|..+. .+.-|=-. .|.--|.+ -++||++|.++|... --|+--|..++.+. +-+.
T Consensus 65 ~~GD~v~V~V~N~L~~~t--tIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~G 142 (596)
T PLN00044 65 TTNWNLVVNVRNALDEPL--LLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYG 142 (596)
T ss_pred ECCCEEEEEEEeCCCCCc--cEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCee
Confidence 445677788999998653 44444322 11112222 289999999999973 45654555666553 2245
Q ss_pred EEEEEee
Q 046294 97 RFHAFKV 103 (141)
Q Consensus 97 ~f~~y~~ 103 (141)
-+.|+..
T Consensus 143 alII~~~ 149 (596)
T PLN00044 143 AITINNR 149 (596)
T ss_pred EEEEcCc
Confidence 6777653
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=50.47 E-value=37 Score=30.30 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=45.2
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC---CCCC--C----cEEeCCCCeEEEEEeeCCCCcceEEEEEE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE---EGDM--G----GRALQAGDDYGWRLRTKIWGTTDFMCTMK 90 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~---d~Dl--G----~~~l~~g~~~~f~F~~~~~~~T~f~C~f~ 90 (141)
-.|.++.|++.|.+.-. +.+.+|=..- ..|- + ...+.||+++.+.|..+-.|+-.|.|+..
T Consensus 504 ~~Gervri~l~N~t~~~--HpmHlHG~~f~v~~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l 573 (587)
T TIGR01480 504 NYGERLRVVLVNDTMMA--HPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHML 573 (587)
T ss_pred cCCCEEEEEEECCCCCC--cceeEcCceeeeecCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCH
Confidence 45678899999987654 4788887541 2221 1 24679999999999988888889999864
No 23
>PLN02991 oxidoreductase
Probab=46.18 E-value=50 Score=29.20 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=43.7
Q ss_pred cccceEEEEEEecCCCCCcceEEEEeeeC------CCCCCc-EEeCCCCeEEEEEee-CCCCcceEEEEEEeC---CeeE
Q 046294 28 FYGVEYDVRVINGFTNNSSLALVIWCSSE------EGDMGG-RALQAGDDYGWRLRT-KIWGTTDFMCTMKWD---QKRR 96 (141)
Q Consensus 28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~------d~DlG~-~~l~~g~~~~f~F~~-~~~~~T~f~C~f~w~---~~~~ 96 (141)
-.|....|.++|.|..+. .|.-|=-.. |.--|. --++||++|.++|.. +-.|+--|..+..+. +-..
T Consensus 64 ~~GD~v~V~V~N~L~~~t--tiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G 141 (543)
T PLN02991 64 VTNDNLIINVFNHLDEPF--LISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFG 141 (543)
T ss_pred ECCCEEEEEecCCCCCCc--cEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCee
Confidence 345677899999997642 444443221 211222 248999999999996 355654444555442 2245
Q ss_pred EEEEEee
Q 046294 97 RFHAFKV 103 (141)
Q Consensus 97 ~f~~y~~ 103 (141)
-+.|...
T Consensus 142 ~lIV~~~ 148 (543)
T PLN02991 142 AIRISSR 148 (543)
T ss_pred eEEEeCC
Confidence 6777653
No 24
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=46.15 E-value=20 Score=23.89 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.4
Q ss_pred EeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294 64 ALQAGDDYGWRLRTKIWGTTDFMCTM 89 (141)
Q Consensus 64 ~l~~g~~~~f~F~~~~~~~T~f~C~f 89 (141)
.+.||+++++.|.. -|+-.|.|..
T Consensus 63 ~~~pG~t~~~tF~~--~G~y~y~C~~ 86 (99)
T TIGR02656 63 LNSPGESYEVTFST--PGTYTFYCEP 86 (99)
T ss_pred ccCCCCEEEEEeCC--CEEEEEEcCC
Confidence 46899999999997 4777999983
No 25
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=43.95 E-value=1.1e+02 Score=21.31 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=36.2
Q ss_pred ceEEEEEEecCCCCCcceEEEEeeeCC---CCCCcEEeCCCCeEEEEEeeCCCCcceEEEEEEeCCe
Q 046294 31 VEYDVRVINGFTNNSSLALVIWCSSEE---GDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQK 94 (141)
Q Consensus 31 ~~~~V~I~N~L~~~~~~~L~vhC~S~d---~DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~~~ 94 (141)
+.-+|+..|+-.... +.+. +.+ -|.+...+.+|++|++.|.. .|+-.|.|.......
T Consensus 48 ~GdTVtw~~~~d~~~-HnV~----s~~~~~f~s~~~~~~~G~t~s~Tf~~--~G~Y~Y~C~pH~~~g 107 (115)
T TIGR03102 48 PGTTVVWEWTGEGGG-HNVV----SDGDGDLDESERVSEEGTTYEHTFEE--PGIYLYVCVPHEALG 107 (115)
T ss_pred CCCEEEEEECCCCCC-EEEE----ECCCCCccccccccCCCCEEEEEecC--CcEEEEEccCCCCCC
Confidence 456788987543221 2343 222 23344456899999999975 477799999876533
No 26
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=43.58 E-value=3.8 Score=25.34 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=14.9
Q ss_pred CceeeEeeehHHHHHHhh
Q 046294 1 MKTLNSILLIFCLAIGII 18 (141)
Q Consensus 1 m~~l~~~l~v~~~~~~i~ 18 (141)
||+|..+|++++|+.-+.
T Consensus 1 mknllkillilafa~pvf 18 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVF 18 (65)
T ss_pred ChhHHHHHHHHHHhhhHh
Confidence 899999999988866554
No 27
>PF12561 TagA: ToxR activated gene A lipoprotein; InterPro: IPR022218 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF10462 from PFAM. There is a conserved GAG sequence motif. This family is a bacterial lipoprotein.
Probab=42.80 E-value=76 Score=23.01 Aligned_cols=42 Identities=17% Similarity=0.525 Sum_probs=32.3
Q ss_pred CcceEEEEEEe-C--CeeEEEEEEeeCCCCcCCCCCceeEEEEecCeE
Q 046294 81 GTTDFMCTMKW-D--QKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGF 125 (141)
Q Consensus 81 ~~T~f~C~f~w-~--~~~~~f~~y~~~~d~~~C~~~~~c~W~~~~dGi 125 (141)
+...+.|.|.. . +..+.|.-|....+ .+|..+..-+|.+ ||.
T Consensus 38 ~~~~~iCrFtf~~~ng~~~~fvG~V~~~~-~~C~~g~di~~~~--ng~ 82 (135)
T PF12561_consen 38 GEQEYICRFTFTAANGDSANFVGYVDTSN-YRCEGGSDIYWRI--NGS 82 (135)
T ss_pred CcccceeEEEeecCCCCEEEEEEeEcCCC-CeEcCCCcEEEEe--cCC
Confidence 44578899998 2 44689999988544 7997788999988 554
No 28
>PF06369 Anemone_cytotox: Sea anemone cytotoxic protein; InterPro: IPR009104 Sea anemones are a rich source of lethal pore-forming peptides and proteins, known collectively as cytolysins or actinoporins. There are several different groups of cytolysins based on their structure and function []. This entry represents the most numerous group, the 20kDa highly basic peptides. These cytolysins form cation-selective pores in sphingomyelin-containing membranes. Examples include equinatoxins (from Actinia equina), sticholysins (from Stichodactyla helianthus), magnificalysins (from Heteractis magnifica), and tenebrosins (from Actinia tenebrosa), which exhibit pore-forming, haemolytic, cytotoxic, and heart stimulatory activities. Cytolysins adopt a stable soluble structure, which undergoes a conformational change when brought in contact with a membrane, leading to an active, membrane-bound form that inserts spontaneously into the membrane. They often oligomerise on the membrane surface, before puncturing the lipid bilayers, causing the cell to lyse. The 20kDa sea anemone cytolysins require a phosphocholine lipid headgroup for binding, however sphingomyelin is required for the toxin to promote membrane permeability []. The crystal structures of equinotoxin II [] and sticholysin II [] both revealed a compact beta-sandwich consisting of ten strands in two sheets flanked on each side by two short alpha-helices, which is a similar topology to osmotin. It is believed that the beta sandwich structure attaches to the membrane, while a three-turn alpha helix lying on the surface of the beta sheet may be involved in membrane pore formation, possibly by the penetration of the membrane by the helix.; GO: 0015267 channel activity, 0006812 cation transport, 0046931 pore complex assembly, 0052331 hemolysis in other organism involved in symbiotic interaction, 0046930 pore complex; PDB: 2KS4_A 1KD6_A 1IAZ_A 1TZQ_A 3LIM_F 1O71_B 2L2B_A 1GWY_B 1O72_A 2L38_A ....
Probab=33.43 E-value=1.4e+02 Score=22.63 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=34.5
Q ss_pred ceEEEEEEecCCCCCcceEEEEeeeCCCCCC-cEEeCCCCeEEEEEeeC
Q 046294 31 VEYDVRVINGFTNNSSLALVIWCSSEEGDMG-GRALQAGDDYGWRLRTK 78 (141)
Q Consensus 31 ~~~~V~I~N~L~~~~~~~L~vhC~S~d~DlG-~~~l~~g~~~~f~F~~~ 78 (141)
.|..|.|.|+-+.- -..+.+-|+|.--|+. .+.++++..-.+.|+.+
T Consensus 29 RkiaIgi~N~s~~~-~ta~~~Yf~SGt~d~~lp~~V~~~kal~~~~~K~ 76 (176)
T PF06369_consen 29 RKIAIGIDNESGHT-WTALNVYFRSGTSDVPLPPTVPPQKALLYSFRKS 76 (176)
T ss_dssp SEEEEEEEEESSS--EEEEEEEEEESBSSS-S-SEE-TTEEEEEEEEST
T ss_pred cceEEEEEcCCCCe-EeccceEEecccccCCCCCccCCcceEEEEEecC
Confidence 68999999985543 2469999999888777 55678888888888765
No 29
>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function. ; PDB: 2K0M_A.
Probab=32.45 E-value=31 Score=22.25 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=10.2
Q ss_pred ceeEEEEecCeEE
Q 046294 114 RKCSWLVKEDGFY 126 (141)
Q Consensus 114 ~~c~W~~~~dGiY 126 (141)
..|.|.+|.||--
T Consensus 55 srCF~vvR~DGs~ 67 (76)
T PF11523_consen 55 SRCFFVVRTDGSE 67 (76)
T ss_dssp -EEEEEEETTS-E
T ss_pred ceEEEEEEeCCCe
Confidence 6899999999964
No 30
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=32.02 E-value=1.4e+02 Score=19.09 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=11.0
Q ss_pred CCCCcceEEEEeeeCCC
Q 046294 42 TNNSSLALVIWCSSEEG 58 (141)
Q Consensus 42 ~~~~~~~L~vhC~S~d~ 58 (141)
..|. .+.++|.+...
T Consensus 14 ~~G~--~VtL~C~~~~~ 28 (91)
T cd05751 14 PLGK--PVTLRCQGPYG 28 (91)
T ss_pred CCCC--cEEEEEecCCC
Confidence 4565 79999999543
No 31
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=30.20 E-value=1.4e+02 Score=18.89 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=33.5
Q ss_pred ceEEEEEEecCCCCCcceEEEEeee-CCCCCCcEEeCCCCeEEEEEeeCCCCcceEEEEEEe
Q 046294 31 VEYDVRVINGFTNNSSLALVIWCSS-EEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKW 91 (141)
Q Consensus 31 ~~~~V~I~N~L~~~~~~~L~vhC~S-~d~DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (141)
+.-+|.+.|.=+.. +.+...=-+ .+.+...-.+.+|++|++.|.. .|+-.|.|....
T Consensus 17 ~GdtVt~~N~d~~~--Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~~--~G~y~y~C~~Hp 74 (83)
T TIGR02657 17 VGDTVTWINREAMP--HNVHFVAGVLGEAALKGPMMKKEQAYSLTFTE--AGTYDYHCTPHP 74 (83)
T ss_pred CCCEEEEEECCCCC--ccEEecCCCCccccccccccCCCCEEEEECCC--CEEEEEEcCCCC
Confidence 34578888962211 245442111 1122323346889999999976 376789998744
No 32
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=29.93 E-value=64 Score=21.28 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=19.9
Q ss_pred EeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294 64 ALQAGDDYGWRLRTKIWGTTDFMCTM 89 (141)
Q Consensus 64 ~l~~g~~~~f~F~~~~~~~T~f~C~f 89 (141)
.+.||++++++|.. -|+-.|.|.-
T Consensus 63 ~~~~G~~~~~tF~~--~G~y~y~C~P 86 (99)
T PF00127_consen 63 LLAPGETYSVTFTK--PGTYEYYCTP 86 (99)
T ss_dssp EBSTTEEEEEEEES--SEEEEEEETT
T ss_pred ecCCCCEEEEEeCC--CeEEEEEcCC
Confidence 47899999999994 3777999985
No 33
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.37 E-value=54 Score=18.08 Aligned_cols=20 Identities=30% Similarity=0.899 Sum_probs=15.4
Q ss_pred cCCCCCceeEEEEecCeEEec
Q 046294 108 LRCNLFRKCSWLVKEDGFYFS 128 (141)
Q Consensus 108 ~~C~~~~~c~W~~~~dGiY~~ 128 (141)
.+|+.|+.. |-..+||.|.=
T Consensus 9 ~~C~~C~~~-~~~~~dG~~yC 28 (36)
T PF11781_consen 9 EPCPVCGSR-WFYSDDGFYYC 28 (36)
T ss_pred CcCCCCCCe-EeEccCCEEEh
Confidence 357767777 99999999864
No 34
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=26.79 E-value=1.8e+02 Score=18.74 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=35.4
Q ss_pred eEEEEEeeCCCCcceEEEEEEeCCee-EEEEEEeeCCCCcCCCCCceeEEEEecCeEEecC
Q 046294 70 DYGWRLRTKIWGTTDFMCTMKWDQKR-RRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSN 129 (141)
Q Consensus 70 ~~~f~F~~~~~~~T~f~C~f~w~~~~-~~f~~y~~~~d~~~C~~~~~c~W~~~~dGiY~~~ 129 (141)
.|.|.|=++..++-.+.=.+...+.. +.-..| =.....|+.+.-|.|+..+.|.++.+
T Consensus 17 ~~~~~fCdp~t~ki~imG~~~~~g~~~~~~~~~--C~~N~DC~~~~VCV~~~~~~~~C~~n 75 (76)
T PF01666_consen 17 NFSFAFCDPETGKIVIMGEENFNGQENKELESY--CTSNRDCGSGSVCVRENSARGRCYYN 75 (76)
T ss_pred CcceEEECCcCCeEEEEeeeccCCcEeEeeccc--cccCcccCCCcEEEEEECCccEEeCC
Confidence 35577777766655554444444432 222211 12245687778999999999988764
No 35
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=25.76 E-value=2.3e+02 Score=20.06 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=22.9
Q ss_pred ceEEEEEEecCCCCCcceEEEEeeeCCC------------CCCcE-EeCCCCeEEEE
Q 046294 31 VEYDVRVINGFTNNSSLALVIWCSSEEG------------DMGGR-ALQAGDDYGWR 74 (141)
Q Consensus 31 ~~~~V~I~N~L~~~~~~~L~vhC~S~d~------------DlG~~-~l~~g~~~~f~ 74 (141)
-.++|+|.|. +... ..|.-+=|-..| -+|.+ .|.||+.|+++
T Consensus 31 f~Y~ItI~N~-~~~~-vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 31 FAYTITIENL-GRVP-VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEEEC-CCCC-EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 5689999995 3332 233333332222 23323 37899987774
No 36
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=22.21 E-value=1.5e+02 Score=25.24 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=13.0
Q ss_pred EEEEecCCCCCcceEEEEeee
Q 046294 35 VRVINGFTNNSSLALVIWCSS 55 (141)
Q Consensus 35 V~I~N~L~~~~~~~L~vhC~S 55 (141)
|.|.|-|.....+.+.+..+.
T Consensus 336 ~~I~NVlaS~qELmfdl~V~A 356 (387)
T PF12751_consen 336 VSIQNVLASEQELMFDLTVEA 356 (387)
T ss_pred EEeeeeeeccceEEEeeEEEE
Confidence 478898888763344444444
No 37
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.11 E-value=3.7e+02 Score=24.06 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=43.6
Q ss_pred cceEEEEEEecCCCCCcceEEEEeee------CCCCCCcE-EeCCCCeEEEEEeeC-CCCcceEEEEEEeCC---eeEEE
Q 046294 30 GVEYDVRVINGFTNNSSLALVIWCSS------EEGDMGGR-ALQAGDDYGWRLRTK-IWGTTDFMCTMKWDQ---KRRRF 98 (141)
Q Consensus 30 ~~~~~V~I~N~L~~~~~~~L~vhC~S------~d~DlG~~-~l~~g~~~~f~F~~~-~~~~T~f~C~f~w~~---~~~~f 98 (141)
+....|.+.|.|... ..|.-|=-- .|.-.+.+ -++||+.|.+.|... --|+=-|.=+..|.. .+.-|
T Consensus 66 gD~ivV~v~N~~~~~--~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~l 143 (563)
T KOG1263|consen 66 GDTIVVNVVNRLDEP--FSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGAL 143 (563)
T ss_pred CCEEEEEEEeCCCCc--eEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEE
Confidence 344557788987743 133333211 23345555 589999999999976 445434445555542 24567
Q ss_pred EEEeeCC
Q 046294 99 HAFKVPR 105 (141)
Q Consensus 99 ~~y~~~~ 105 (141)
.|+....
T Consensus 144 iI~~~~~ 150 (563)
T KOG1263|consen 144 IINPRPG 150 (563)
T ss_pred EEcCCcc
Confidence 7776554
No 38
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=20.96 E-value=2.9e+02 Score=19.05 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred EEEEEeeCC-CCcCCCCCceeEEEEecCeEEecCCCCCceEEeec
Q 046294 97 RFHAFKVPR-DSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSW 140 (141)
Q Consensus 97 ~f~~y~~~~-d~~~C~~~~~c~W~~~~dGiY~~~~~~~~~k~y~W 140 (141)
.|.|+.... ...+|+-.+.|.=.+.++.+++.+.+. ..+.+.|
T Consensus 3 ~F~V~v~~Teaserc~L~G~y~L~v~~~~l~L~d~~~-~~~l~~W 46 (104)
T cd01203 3 EFPVTLQPTEASERCCLPGSYMLRMGPTELQLKSEDL-GATLYMW 46 (104)
T ss_pred EEEEEEEEChhHHhcCCceeEEEEEcCCEEEEEcCCC-CcEEEEe
Confidence 456666444 356887788999999999999998644 4455666
Done!