Query 046296
Match_columns 167
No_of_seqs 296 out of 1666
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.7 1.2E-16 2.5E-21 120.4 12.5 100 63-164 32-131 (144)
2 KOG0553 TPR repeat-containing 99.6 1.2E-15 2.6E-20 126.6 10.0 99 65-165 91-189 (304)
3 PRK11189 lipoprotein NlpI; Pro 99.6 1.4E-14 3E-19 120.7 13.3 96 63-160 72-167 (296)
4 PLN03088 SGT1, suppressor of 99.6 2.2E-14 4.8E-19 122.7 13.7 99 63-163 10-108 (356)
5 TIGR02552 LcrH_SycD type III s 99.6 2.2E-14 4.8E-19 104.8 11.9 98 63-162 25-122 (135)
6 PRK10370 formate-dependent nit 99.6 2.7E-14 5.8E-19 113.1 12.4 94 64-158 82-177 (198)
7 KOG4626 O-linked N-acetylgluco 99.5 2.8E-14 6E-19 128.0 8.2 102 63-166 396-497 (966)
8 PRK10370 formate-dependent nit 99.5 3.3E-13 7.1E-18 106.9 13.1 96 68-165 52-150 (198)
9 PRK15363 pathogenicity island 99.5 2.6E-13 5.7E-18 104.0 11.8 89 65-155 45-133 (157)
10 KOG4626 O-linked N-acetylgluco 99.5 9.9E-14 2.2E-18 124.5 10.9 101 63-165 294-394 (966)
11 COG3063 PilF Tfp pilus assembl 99.5 1.9E-13 4E-18 110.3 11.2 92 64-158 44-135 (250)
12 COG3063 PilF Tfp pilus assembl 99.5 1.6E-13 3.5E-18 110.7 9.9 99 63-163 77-177 (250)
13 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.4E-12 3E-17 92.2 12.7 99 63-163 10-114 (119)
14 cd00189 TPR Tetratricopeptide 99.5 5.7E-13 1.2E-17 87.0 9.9 93 63-157 8-100 (100)
15 PRK12370 invasion protein regu 99.5 5.9E-13 1.3E-17 119.6 12.9 92 68-161 317-408 (553)
16 PF13414 TPR_11: TPR repeat; P 99.5 3.5E-13 7.7E-18 88.2 8.5 68 87-156 1-69 (69)
17 TIGR00990 3a0801s09 mitochondr 99.5 8.3E-13 1.8E-17 119.5 13.4 99 63-163 339-437 (615)
18 TIGR00990 3a0801s09 mitochondr 99.4 1.3E-12 2.9E-17 118.2 13.6 100 63-164 373-472 (615)
19 PRK15359 type III secretion sy 99.4 7.8E-13 1.7E-17 99.5 9.8 87 74-165 12-98 (144)
20 PRK09782 bacteriophage N4 rece 99.4 1.7E-12 3.7E-17 123.5 13.1 96 64-161 618-713 (987)
21 PRK12370 invasion protein regu 99.4 3.2E-12 7E-17 114.8 13.1 99 63-163 346-445 (553)
22 PF13429 TPR_15: Tetratricopep 99.4 6.5E-13 1.4E-17 108.9 7.8 101 63-165 154-254 (280)
23 PRK15179 Vi polysaccharide bio 99.4 5.9E-12 1.3E-16 116.0 12.7 100 64-165 95-194 (694)
24 TIGR02521 type_IV_pilW type IV 99.4 1.7E-11 3.7E-16 93.9 13.1 91 63-155 39-129 (234)
25 PRK09782 bacteriophage N4 rece 99.4 9.4E-12 2E-16 118.5 14.0 94 69-165 590-683 (987)
26 PRK02603 photosystem I assembl 99.4 1.4E-11 3E-16 94.7 12.4 98 63-162 43-157 (172)
27 TIGR02552 LcrH_SycD type III s 99.4 8E-12 1.7E-16 91.2 10.4 87 76-164 4-90 (135)
28 PF13432 TPR_16: Tetratricopep 99.4 3.4E-12 7.5E-17 82.7 7.5 64 94-159 2-65 (65)
29 TIGR02521 type_IV_pilW type IV 99.4 2.2E-11 4.7E-16 93.3 13.0 98 63-162 73-172 (234)
30 KOG1155 Anaphase-promoting com 99.4 5.5E-12 1.2E-16 110.1 10.5 101 62-164 337-437 (559)
31 PRK15174 Vi polysaccharide exp 99.3 1.4E-11 3.1E-16 112.9 13.2 100 63-164 220-323 (656)
32 PF12895 Apc3: Anaphase-promot 99.3 3.7E-12 8E-17 86.9 7.1 81 68-151 2-84 (84)
33 KOG1126 DNA-binding cell divis 99.3 2.1E-12 4.6E-17 116.0 7.3 92 67-160 467-558 (638)
34 CHL00033 ycf3 photosystem I as 99.3 4.6E-11 9.9E-16 91.3 12.8 97 62-160 42-155 (168)
35 COG5010 TadD Flp pilus assembl 99.3 2.2E-11 4.8E-16 99.5 10.9 100 64-165 109-208 (257)
36 TIGR02917 PEP_TPR_lipo putativ 99.3 3.4E-11 7.4E-16 108.8 12.9 100 63-165 778-877 (899)
37 KOG1125 TPR repeat-containing 99.3 3.9E-12 8.5E-17 112.9 6.6 93 63-157 438-530 (579)
38 PRK15174 Vi polysaccharide exp 99.3 5.1E-11 1.1E-15 109.3 13.2 97 63-161 254-354 (656)
39 PRK10049 pgaA outer membrane p 99.3 6E-11 1.3E-15 110.3 13.6 99 63-164 57-155 (765)
40 KOG0548 Molecular co-chaperone 99.3 3.1E-11 6.7E-16 106.5 10.5 102 62-165 365-466 (539)
41 KOG1126 DNA-binding cell divis 99.3 3E-11 6.5E-16 108.6 10.1 100 63-164 497-596 (638)
42 TIGR03302 OM_YfiO outer membra 99.3 7.4E-11 1.6E-15 93.9 11.1 97 63-161 41-151 (235)
43 PRK10049 pgaA outer membrane p 99.3 8.6E-11 1.9E-15 109.3 13.2 98 63-162 367-464 (765)
44 PF13432 TPR_16: Tetratricopep 99.2 1.7E-11 3.6E-16 79.5 5.5 61 63-124 5-65 (65)
45 COG4235 Cytochrome c biogenesi 99.2 1.1E-10 2.3E-15 97.2 11.7 96 63-159 164-261 (287)
46 PRK11447 cellulose synthase su 99.2 1.7E-10 3.7E-15 111.5 14.0 56 104-160 475-530 (1157)
47 TIGR02917 PEP_TPR_lipo putativ 99.2 1.9E-10 4.1E-15 103.9 13.1 99 63-163 133-231 (899)
48 PRK11447 cellulose synthase su 99.2 1.5E-10 3.2E-15 111.9 13.1 99 63-163 311-423 (1157)
49 PRK11189 lipoprotein NlpI; Pro 99.2 2.3E-10 5E-15 95.3 12.6 94 69-164 40-137 (296)
50 PRK10803 tol-pal system protei 99.2 4.8E-10 1E-14 92.7 13.6 94 66-161 154-253 (263)
51 PF13414 TPR_11: TPR repeat; P 99.2 4.2E-11 9.1E-16 78.3 5.7 58 63-121 11-69 (69)
52 PRK15179 Vi polysaccharide bio 99.2 2.8E-10 6E-15 105.1 12.6 100 63-164 128-227 (694)
53 KOG0543 FKBP-type peptidyl-pro 99.2 3.3E-10 7.2E-15 97.5 11.8 100 62-163 215-329 (397)
54 PF14559 TPR_19: Tetratricopep 99.1 1.4E-10 3E-15 75.5 6.5 64 67-131 3-66 (68)
55 PRK11788 tetratricopeptide rep 99.1 1E-09 2.3E-14 92.7 12.9 93 65-159 190-283 (389)
56 PLN02789 farnesyltranstransfer 99.1 6.8E-10 1.5E-14 94.1 11.7 91 70-162 87-179 (320)
57 TIGR03302 OM_YfiO outer membra 99.1 5.8E-10 1.3E-14 88.7 10.6 95 63-159 78-200 (235)
58 PF06552 TOM20_plant: Plant sp 99.1 6.9E-10 1.5E-14 86.7 10.6 93 71-164 7-119 (186)
59 PF13371 TPR_9: Tetratricopept 99.1 4.8E-10 1E-14 73.8 8.4 65 64-129 4-68 (73)
60 PRK15363 pathogenicity island 99.1 5.1E-10 1.1E-14 85.9 9.6 83 80-164 25-108 (157)
61 PLN02789 farnesyltranstransfer 99.1 1.2E-09 2.6E-14 92.6 12.7 98 64-163 46-146 (320)
62 PRK11788 tetratricopeptide rep 99.1 1E-09 2.2E-14 92.7 12.3 97 63-162 222-319 (389)
63 PRK15331 chaperone protein Sic 99.1 8.3E-10 1.8E-14 85.2 10.4 94 66-162 48-141 (165)
64 KOG0547 Translocase of outer m 99.1 3E-10 6.5E-15 99.9 8.5 93 63-157 402-494 (606)
65 KOG1155 Anaphase-promoting com 99.1 9.6E-10 2.1E-14 96.2 11.4 97 64-162 373-469 (559)
66 PF13371 TPR_9: Tetratricopept 99.1 1.2E-09 2.5E-14 72.0 8.3 65 97-163 3-67 (73)
67 PF13429 TPR_15: Tetratricopep 99.1 5.6E-10 1.2E-14 91.5 8.0 98 63-162 118-217 (280)
68 PF14559 TPR_19: Tetratricopep 99.1 5.5E-10 1.2E-14 72.6 6.3 61 102-163 3-63 (68)
69 COG5010 TadD Flp pilus assembl 99.0 1.6E-09 3.5E-14 88.7 10.2 100 64-165 75-174 (257)
70 KOG2076 RNA polymerase III tra 99.0 2.9E-09 6.3E-14 98.6 12.5 100 62-163 146-245 (895)
71 PRK11906 transcriptional regul 99.0 2.2E-09 4.7E-14 94.2 11.1 89 69-159 318-406 (458)
72 COG4783 Putative Zn-dependent 99.0 3.8E-09 8.3E-14 92.7 12.1 100 63-164 314-413 (484)
73 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.1E-09 4.5E-14 94.2 10.2 70 84-155 70-142 (453)
74 cd05804 StaR_like StaR_like; a 99.0 3.3E-09 7.2E-14 88.7 10.4 91 64-156 123-217 (355)
75 KOG0547 Translocase of outer m 99.0 2E-09 4.3E-14 94.8 9.1 96 64-161 369-464 (606)
76 PRK14574 hmsH outer membrane p 99.0 4.4E-09 9.5E-14 98.8 11.8 100 64-166 111-210 (822)
77 PRK14574 hmsH outer membrane p 99.0 4.7E-09 1E-13 98.6 12.0 99 63-163 42-140 (822)
78 COG4235 Cytochrome c biogenesi 99.0 8.5E-09 1.8E-13 85.9 11.9 96 69-165 136-233 (287)
79 KOG1173 Anaphase-promoting com 99.0 7E-09 1.5E-13 92.4 11.5 67 92-160 458-524 (611)
80 cd05804 StaR_like StaR_like; a 98.9 9.7E-09 2.1E-13 85.9 11.4 94 64-159 52-182 (355)
81 KOG0548 Molecular co-chaperone 98.9 4.9E-09 1.1E-13 92.8 9.8 102 62-165 9-110 (539)
82 KOG4162 Predicted calmodulin-b 98.9 5.4E-09 1.2E-13 95.7 10.0 95 63-159 692-788 (799)
83 KOG1125 TPR repeat-containing 98.9 3.2E-09 7E-14 94.6 8.3 95 69-165 408-504 (579)
84 KOG4648 Uncharacterized conser 98.9 3.5E-09 7.7E-14 90.4 7.6 99 62-162 104-202 (536)
85 PF09976 TPR_21: Tetratricopep 98.9 1.2E-08 2.6E-13 76.4 9.4 85 65-152 58-145 (145)
86 CHL00033 ycf3 photosystem I as 98.9 2.3E-08 4.9E-13 76.3 10.7 97 66-164 10-111 (168)
87 PRK11906 transcriptional regul 98.9 2.2E-08 4.7E-13 88.0 11.7 95 69-164 272-377 (458)
88 PF12688 TPR_5: Tetratrico pep 98.9 6.8E-08 1.5E-12 71.1 12.5 89 64-154 10-104 (120)
89 KOG3060 Uncharacterized conser 98.9 2.6E-08 5.6E-13 81.8 10.9 95 69-165 134-231 (289)
90 cd00189 TPR Tetratricopeptide 98.9 2.9E-08 6.3E-13 64.3 9.0 70 91-162 2-71 (100)
91 KOG3060 Uncharacterized conser 98.8 4.7E-08 1E-12 80.3 11.1 100 64-165 95-194 (289)
92 PRK10153 DNA-binding transcrip 98.8 4.8E-08 1E-12 87.7 11.8 88 70-160 399-488 (517)
93 PRK02603 photosystem I assembl 98.8 8.1E-08 1.8E-12 73.7 11.5 75 87-163 33-110 (172)
94 KOG2003 TPR repeat-containing 98.8 2.9E-08 6.4E-13 87.4 9.4 101 63-165 498-598 (840)
95 KOG1128 Uncharacterized conser 98.8 1.7E-08 3.6E-13 92.2 8.0 100 66-167 496-595 (777)
96 KOG4642 Chaperone-dependent E3 98.8 2.7E-08 5.9E-13 81.1 8.1 90 63-154 18-107 (284)
97 KOG0553 TPR repeat-containing 98.8 1.7E-08 3.8E-13 84.2 6.4 88 62-151 122-212 (304)
98 TIGR00540 hemY_coli hemY prote 98.7 1.2E-07 2.6E-12 82.3 11.7 95 63-160 271-372 (409)
99 PF13424 TPR_12: Tetratricopep 98.7 1.5E-08 3.3E-13 67.6 4.8 67 86-154 2-75 (78)
100 KOG4234 TPR repeat-containing 98.7 1.3E-07 2.8E-12 75.8 10.7 98 63-162 103-205 (271)
101 PLN03088 SGT1, suppressor of 98.7 7.8E-08 1.7E-12 82.4 9.9 73 63-136 44-116 (356)
102 PF13512 TPR_18: Tetratricopep 98.7 2.7E-07 5.7E-12 69.8 11.7 97 64-162 19-136 (142)
103 TIGR02795 tol_pal_ybgF tol-pal 98.7 9.3E-08 2E-12 67.2 8.7 69 89-159 2-73 (119)
104 PRK10747 putative protoheme IX 98.7 1.9E-07 4E-12 80.9 11.8 90 65-159 273-362 (398)
105 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.5E-07 3.2E-12 82.0 11.1 93 67-164 181-273 (395)
106 PRK10866 outer membrane biogen 98.7 3.1E-07 6.7E-12 75.0 12.2 98 63-162 40-161 (243)
107 COG1729 Uncharacterized protei 98.7 3.6E-07 7.9E-12 75.4 12.5 96 65-162 151-252 (262)
108 KOG2076 RNA polymerase III tra 98.7 1.6E-07 3.4E-12 87.3 11.4 92 63-156 181-272 (895)
109 KOG0624 dsRNA-activated protei 98.7 5.4E-08 1.2E-12 83.2 7.7 96 64-161 47-142 (504)
110 TIGR00540 hemY_coli hemY prote 98.7 4E-07 8.6E-12 79.0 13.2 94 67-162 96-190 (409)
111 COG4783 Putative Zn-dependent 98.7 2.7E-07 5.8E-12 81.2 11.9 90 63-154 348-437 (484)
112 PRK10153 DNA-binding transcrip 98.7 2.2E-07 4.7E-12 83.5 11.2 88 69-157 356-452 (517)
113 PRK14720 transcript cleavage f 98.6 1.9E-07 4.2E-12 88.1 10.4 98 64-165 40-156 (906)
114 PRK10747 putative protoheme IX 98.6 7.3E-07 1.6E-11 77.2 13.1 93 66-160 129-222 (398)
115 KOG1840 Kinesin light chain [C 98.6 1.5E-07 3.4E-12 84.2 9.0 91 63-155 207-313 (508)
116 KOG0550 Molecular chaperone (D 98.6 1.4E-07 3E-12 81.9 7.6 93 63-157 257-353 (486)
117 COG4785 NlpI Lipoprotein NlpI, 98.6 1.5E-07 3.2E-12 76.3 7.1 98 62-161 72-169 (297)
118 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.5E-07 2.1E-11 77.0 12.7 86 64-151 209-294 (395)
119 PF13525 YfiO: Outer membrane 98.6 4.9E-07 1.1E-11 71.5 10.0 98 63-161 13-126 (203)
120 KOG2002 TPR-containing nuclear 98.6 2.7E-07 5.8E-12 86.5 9.6 100 63-164 315-419 (1018)
121 COG2956 Predicted N-acetylgluc 98.6 5.2E-07 1.1E-11 76.5 9.9 95 63-159 149-248 (389)
122 KOG1174 Anaphase-promoting com 98.6 6.4E-07 1.4E-11 78.1 10.4 90 70-162 419-508 (564)
123 PF13431 TPR_17: Tetratricopep 98.5 1.1E-07 2.4E-12 54.8 3.3 32 113-145 2-33 (34)
124 PF04733 Coatomer_E: Coatomer 98.5 3.3E-07 7.1E-12 76.8 7.6 101 63-165 139-241 (290)
125 KOG0543 FKBP-type peptidyl-pro 98.5 1E-06 2.2E-11 76.2 10.4 92 64-156 266-357 (397)
126 KOG1156 N-terminal acetyltrans 98.5 4.6E-07 1E-11 82.1 8.3 93 69-163 21-113 (700)
127 KOG1173 Anaphase-promoting com 98.5 9.2E-07 2E-11 79.2 10.1 98 63-162 320-417 (611)
128 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 7.1E-07 1.5E-11 78.5 9.2 58 62-120 82-142 (453)
129 KOG1840 Kinesin light chain [C 98.5 4.7E-07 1E-11 81.1 8.3 90 63-154 249-354 (508)
130 PF13431 TPR_17: Tetratricopep 98.5 1.7E-07 3.7E-12 54.0 3.3 34 77-111 1-34 (34)
131 KOG2002 TPR-containing nuclear 98.5 6.5E-07 1.4E-11 84.0 8.8 93 71-165 146-239 (1018)
132 KOG1129 TPR repeat-containing 98.5 3.8E-07 8.2E-12 77.7 6.6 88 65-154 300-387 (478)
133 PF09976 TPR_21: Tetratricopep 98.5 4.8E-06 1E-10 62.1 12.0 82 67-150 23-110 (145)
134 PF04733 Coatomer_E: Coatomer 98.5 6.6E-07 1.4E-11 74.9 7.9 92 69-162 181-273 (290)
135 PF13428 TPR_14: Tetratricopep 98.4 6.1E-07 1.3E-11 54.2 5.3 42 90-132 2-43 (44)
136 KOG0376 Serine-threonine phosp 98.4 2.3E-07 5.1E-12 81.5 4.7 98 65-164 14-111 (476)
137 KOG4555 TPR repeat-containing 98.4 4E-06 8.8E-11 63.2 10.7 88 68-157 56-147 (175)
138 KOG1129 TPR repeat-containing 98.4 3.2E-07 6.8E-12 78.2 5.3 98 66-165 335-435 (478)
139 KOG4162 Predicted calmodulin-b 98.4 2E-06 4.3E-11 79.2 10.7 100 64-165 659-760 (799)
140 PRK10803 tol-pal system protei 98.4 3.3E-06 7.1E-11 69.9 10.7 74 88-162 141-217 (263)
141 KOG2003 TPR repeat-containing 98.4 2.1E-06 4.6E-11 75.9 9.5 96 63-160 532-627 (840)
142 PRK14720 transcript cleavage f 98.4 2.1E-06 4.5E-11 81.3 9.9 79 73-154 100-178 (906)
143 PRK10866 outer membrane biogen 98.4 3.5E-06 7.5E-11 68.8 9.6 77 87-165 30-109 (243)
144 KOG0550 Molecular chaperone (D 98.3 1E-06 2.3E-11 76.6 6.5 101 64-166 178-290 (486)
145 PF13428 TPR_14: Tetratricopep 98.3 1.5E-06 3.4E-11 52.4 5.4 41 124-165 1-41 (44)
146 PF12688 TPR_5: Tetratrico pep 98.3 7.5E-06 1.6E-10 60.2 9.8 67 89-157 1-70 (120)
147 KOG1174 Anaphase-promoting com 98.3 3.2E-06 6.9E-11 73.8 8.9 98 62-160 239-369 (564)
148 KOG1156 N-terminal acetyltrans 98.3 5E-06 1.1E-10 75.5 9.8 95 66-162 52-146 (700)
149 PF07719 TPR_2: Tetratricopept 98.3 2.4E-06 5.2E-11 47.9 5.2 34 124-158 1-34 (34)
150 KOG1127 TPR repeat-containing 98.3 4E-06 8.7E-11 79.2 9.3 94 66-159 13-108 (1238)
151 KOG2396 HAT (Half-A-TPR) repea 98.3 1.2E-05 2.6E-10 71.5 11.8 94 72-166 88-181 (568)
152 PRK15331 chaperone protein Sic 98.3 4.1E-06 8.9E-11 64.8 7.8 76 84-161 32-107 (165)
153 COG2956 Predicted N-acetylgluc 98.3 8.8E-06 1.9E-10 69.1 10.2 96 65-162 190-286 (389)
154 PF00515 TPR_1: Tetratricopept 98.2 2.3E-06 5E-11 48.4 4.5 33 124-157 1-33 (34)
155 PF12895 Apc3: Anaphase-promot 98.2 1.2E-06 2.7E-11 59.4 3.9 58 103-162 2-61 (84)
156 PF05843 Suf: Suppressor of fo 98.2 2.7E-06 5.8E-11 70.7 6.5 90 69-159 15-104 (280)
157 PF13424 TPR_12: Tetratricopep 98.2 1.7E-06 3.7E-11 57.5 4.0 56 63-119 13-75 (78)
158 PF12569 NARP1: NMDA receptor- 98.2 1.5E-05 3.2E-10 71.8 10.6 91 63-155 202-292 (517)
159 KOG1127 TPR repeat-containing 98.2 7E-06 1.5E-10 77.6 8.2 92 63-156 570-661 (1238)
160 KOG0495 HAT repeat protein [RN 98.2 1.2E-05 2.7E-10 73.4 9.5 93 68-162 664-756 (913)
161 KOG1128 Uncharacterized conser 98.1 4.1E-06 9E-11 76.8 6.3 98 65-165 434-559 (777)
162 KOG0545 Aryl-hydrocarbon recep 98.1 2.8E-05 6.2E-10 64.1 10.1 96 64-161 187-300 (329)
163 PF07719 TPR_2: Tetratricopept 98.1 1.1E-05 2.4E-10 45.1 5.2 34 89-123 1-34 (34)
164 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00014 3.1E-09 52.6 12.3 92 64-157 139-234 (291)
165 PF13512 TPR_18: Tetratricopep 98.1 2.6E-05 5.7E-10 59.0 8.5 77 88-166 9-88 (142)
166 PF00515 TPR_1: Tetratricopept 98.1 8.9E-06 1.9E-10 45.9 4.5 34 89-123 1-34 (34)
167 PF13525 YfiO: Outer membrane 98.1 3.3E-05 7.2E-10 61.0 9.2 75 88-164 4-81 (203)
168 KOG0551 Hsp90 co-chaperone CNS 98.1 1.7E-05 3.7E-10 67.5 7.8 95 62-158 88-186 (390)
169 KOG0495 HAT repeat protein [RN 98.0 3.9E-05 8.4E-10 70.3 9.5 100 62-163 692-791 (913)
170 KOG1070 rRNA processing protei 98.0 4.4E-05 9.5E-10 74.3 10.2 101 63-165 1538-1640(1710)
171 KOG3824 Huntingtin interacting 98.0 1.1E-05 2.4E-10 68.4 5.6 65 67-132 128-192 (472)
172 PF05843 Suf: Suppressor of fo 98.0 8.2E-05 1.8E-09 61.8 10.7 92 68-161 49-143 (280)
173 KOG0624 dsRNA-activated protei 98.0 0.00011 2.3E-09 63.4 11.4 91 68-160 168-258 (504)
174 KOG3824 Huntingtin interacting 98.0 2.5E-05 5.4E-10 66.3 7.6 62 102-164 128-189 (472)
175 PF03704 BTAD: Bacterial trans 97.9 0.00028 6.1E-09 52.2 11.8 85 67-153 18-124 (146)
176 KOG1308 Hsp70-interacting prot 97.9 2.9E-06 6.3E-11 72.3 0.9 89 67-157 126-214 (377)
177 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0004 8.8E-09 50.2 11.6 91 65-157 177-268 (291)
178 PF12569 NARP1: NMDA receptor- 97.9 0.0001 2.2E-09 66.5 9.8 69 91-161 196-264 (517)
179 COG4700 Uncharacterized protei 97.9 0.00013 2.9E-09 58.1 9.2 92 65-158 99-193 (251)
180 PF06552 TOM20_plant: Plant sp 97.9 8.9E-05 1.9E-09 58.2 8.0 63 69-132 49-122 (186)
181 COG4105 ComL DNA uptake lipopr 97.8 0.00017 3.7E-09 59.4 9.8 98 63-161 42-152 (254)
182 PF13181 TPR_8: Tetratricopept 97.8 3.8E-05 8.2E-10 43.1 4.3 32 125-157 2-33 (34)
183 COG5191 Uncharacterized conser 97.8 2.9E-05 6.3E-10 65.9 4.6 88 77-166 95-183 (435)
184 COG3071 HemY Uncharacterized e 97.8 0.0003 6.5E-09 61.0 10.6 90 65-159 273-362 (400)
185 KOG3081 Vesicle coat complex C 97.7 0.00021 4.5E-09 59.4 8.9 100 63-165 145-247 (299)
186 KOG2053 Mitochondrial inherita 97.7 0.00024 5.1E-09 66.8 10.1 94 68-164 22-115 (932)
187 KOG4507 Uncharacterized conser 97.7 0.00014 3E-09 66.1 8.0 99 64-164 616-715 (886)
188 KOG1915 Cell cycle control pro 97.7 0.00025 5.5E-09 63.2 8.8 95 63-159 81-175 (677)
189 PF14938 SNAP: Soluble NSF att 97.7 0.00013 2.9E-09 60.4 6.7 85 69-155 88-185 (282)
190 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0012 2.5E-08 56.0 12.5 89 76-165 6-105 (321)
191 PF14938 SNAP: Soluble NSF att 97.6 0.00034 7.3E-09 57.9 8.5 94 63-158 122-229 (282)
192 KOG3081 Vesicle coat complex C 97.6 0.0011 2.4E-08 55.2 10.9 91 69-161 187-278 (299)
193 COG3071 HemY Uncharacterized e 97.6 0.00091 2E-08 58.0 10.8 83 69-154 308-390 (400)
194 COG3118 Thioredoxin domain-con 97.5 0.0019 4.2E-08 54.3 11.5 89 66-156 145-267 (304)
195 PF10300 DUF3808: Protein of u 97.5 0.0013 2.7E-08 58.7 11.1 87 69-157 247-337 (468)
196 COG4105 ComL DNA uptake lipopr 97.5 0.00083 1.8E-08 55.4 9.0 78 88-167 33-113 (254)
197 PF13181 TPR_8: Tetratricopept 97.5 0.00026 5.6E-09 39.6 4.3 33 90-123 2-34 (34)
198 KOG2376 Signal recognition par 97.5 0.00089 1.9E-08 60.7 9.5 98 62-161 117-260 (652)
199 PF04184 ST7: ST7 protein; In 97.5 0.00084 1.8E-08 60.0 9.2 85 69-157 182-291 (539)
200 PLN03077 Protein ECB2; Provisi 97.4 0.0011 2.3E-08 62.6 10.4 89 67-159 601-691 (857)
201 PLN03081 pentatricopeptide (PP 97.4 0.00086 1.9E-08 61.9 9.4 86 65-154 472-557 (697)
202 KOG4555 TPR repeat-containing 97.4 0.0014 3.1E-08 49.6 8.7 63 95-159 49-111 (175)
203 PF13174 TPR_6: Tetratricopept 97.4 0.0004 8.7E-09 38.2 4.2 32 126-158 2-33 (33)
204 PLN03218 maturation of RBCL 1; 97.4 0.0028 6.1E-08 61.6 12.4 84 67-153 591-677 (1060)
205 COG1729 Uncharacterized protei 97.3 0.0011 2.4E-08 54.9 8.1 67 92-160 144-213 (262)
206 smart00028 TPR Tetratricopepti 97.3 0.0004 8.6E-09 36.2 3.7 32 125-157 2-33 (34)
207 KOG4648 Uncharacterized conser 97.3 0.00056 1.2E-08 59.1 6.2 63 94-158 102-164 (536)
208 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.00095 2.1E-08 42.2 5.7 40 91-131 3-42 (53)
209 KOG1915 Cell cycle control pro 97.3 0.002 4.3E-08 57.6 9.5 96 67-165 449-546 (677)
210 COG4785 NlpI Lipoprotein NlpI, 97.3 0.0011 2.4E-08 54.1 7.2 72 90-163 66-137 (297)
211 PF04184 ST7: ST7 protein; In 97.3 0.0043 9.3E-08 55.6 11.4 95 67-162 271-383 (539)
212 PF14561 TPR_20: Tetratricopep 97.3 0.0041 8.9E-08 43.4 9.2 74 74-149 7-82 (90)
213 PF14561 TPR_20: Tetratricopep 97.3 0.0012 2.6E-08 46.1 6.4 49 109-158 7-55 (90)
214 PF13176 TPR_7: Tetratricopept 97.3 0.00064 1.4E-08 39.1 4.2 27 126-153 1-27 (36)
215 PF04781 DUF627: Protein of un 97.3 0.0036 7.9E-08 45.5 9.0 90 64-154 5-107 (111)
216 PLN03081 pentatricopeptide (PP 97.2 0.0023 4.9E-08 59.1 9.9 85 65-154 269-354 (697)
217 KOG2610 Uncharacterized conser 97.2 0.0023 5E-08 55.1 8.9 93 67-161 115-211 (491)
218 PLN03218 maturation of RBCL 1; 97.2 0.0056 1.2E-07 59.6 12.5 86 66-154 553-643 (1060)
219 PRK04841 transcriptional regul 97.2 0.0042 9.1E-08 58.4 11.5 89 64-154 461-560 (903)
220 COG3914 Spy Predicted O-linked 97.2 0.0038 8.2E-08 56.7 10.5 95 69-164 81-181 (620)
221 KOG4234 TPR repeat-containing 97.2 0.0017 3.6E-08 52.5 7.2 70 63-133 142-211 (271)
222 KOG2376 Signal recognition par 97.2 0.0041 8.8E-08 56.6 10.3 90 65-159 22-144 (652)
223 KOG2796 Uncharacterized conser 97.2 0.0014 2.9E-08 54.9 6.8 93 64-158 221-319 (366)
224 PLN03077 Protein ECB2; Provisi 97.1 0.0036 7.7E-08 59.1 10.4 90 64-157 563-656 (857)
225 KOG2610 Uncharacterized conser 97.1 0.0025 5.3E-08 55.0 8.3 87 63-151 145-235 (491)
226 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0031 6.7E-08 39.9 6.6 37 125-162 2-38 (53)
227 KOG0530 Protein farnesyltransf 97.1 0.0066 1.4E-07 50.6 10.2 97 65-162 53-150 (318)
228 KOG1070 rRNA processing protei 97.1 0.0038 8.2E-08 61.4 9.9 91 63-155 1572-1664(1710)
229 PRK10941 hypothetical protein; 97.1 0.0057 1.2E-07 50.9 9.9 67 94-162 186-252 (269)
230 KOG4340 Uncharacterized conser 97.1 0.0031 6.7E-08 53.7 8.2 84 66-151 21-104 (459)
231 KOG3364 Membrane protein invol 97.1 0.0077 1.7E-07 45.5 9.4 74 88-162 31-108 (149)
232 KOG3785 Uncharacterized conser 97.1 0.0053 1.2E-07 53.4 9.5 92 65-158 67-184 (557)
233 KOG1130 Predicted G-alpha GTPa 97.0 0.0013 2.8E-08 58.0 5.8 93 62-156 202-306 (639)
234 COG4700 Uncharacterized protei 97.0 0.0078 1.7E-07 48.2 9.5 91 63-156 132-228 (251)
235 PRK04841 transcriptional regul 97.0 0.0062 1.3E-07 57.3 10.4 90 64-155 500-603 (903)
236 PRK10941 hypothetical protein; 97.0 0.0062 1.3E-07 50.7 9.2 69 64-133 190-258 (269)
237 COG2976 Uncharacterized protei 97.0 0.0073 1.6E-07 48.2 8.9 93 64-159 98-193 (207)
238 PF09613 HrpB1_HrpK: Bacterial 97.0 0.012 2.6E-07 45.4 9.9 87 67-156 22-108 (160)
239 KOG1310 WD40 repeat protein [G 96.9 0.0041 8.9E-08 56.3 8.2 89 70-159 389-479 (758)
240 smart00028 TPR Tetratricopepti 96.9 0.0017 3.8E-08 33.6 3.8 33 90-123 2-34 (34)
241 PF03704 BTAD: Bacterial trans 96.9 0.0056 1.2E-07 45.2 7.7 54 64-118 71-124 (146)
242 KOG2053 Mitochondrial inherita 96.9 0.0077 1.7E-07 56.9 10.1 98 64-164 52-149 (932)
243 KOG4642 Chaperone-dependent E3 96.9 0.002 4.2E-08 53.1 5.2 60 102-162 22-81 (284)
244 COG4976 Predicted methyltransf 96.8 0.0016 3.4E-08 53.4 4.4 60 65-125 5-64 (287)
245 KOG3785 Uncharacterized conser 96.8 0.004 8.6E-08 54.1 7.0 85 65-151 32-117 (557)
246 PF13174 TPR_6: Tetratricopept 96.8 0.003 6.6E-08 34.6 4.3 33 90-123 1-33 (33)
247 PF13176 TPR_7: Tetratricopept 96.8 0.0028 6E-08 36.4 4.2 28 91-119 1-28 (36)
248 KOG1586 Protein required for f 96.8 0.011 2.4E-07 48.7 8.9 91 69-160 87-189 (288)
249 PF10300 DUF3808: Protein of u 96.8 0.008 1.7E-07 53.6 8.9 90 63-154 275-376 (468)
250 KOG2471 TPR repeat-containing 96.7 0.0022 4.8E-08 57.5 4.6 100 63-164 248-374 (696)
251 PF13374 TPR_10: Tetratricopep 96.7 0.0049 1.1E-07 35.4 4.7 30 124-154 2-31 (42)
252 PF08424 NRDE-2: NRDE-2, neces 96.7 0.046 9.9E-07 46.3 12.4 84 70-154 46-131 (321)
253 KOG1585 Protein required for f 96.7 0.027 5.9E-07 46.7 10.5 93 64-158 40-143 (308)
254 PF09986 DUF2225: Uncharacteri 96.6 0.034 7.3E-07 44.7 10.6 84 69-154 91-194 (214)
255 KOG2396 HAT (Half-A-TPR) repea 96.6 0.011 2.5E-07 52.9 8.3 69 65-133 114-183 (568)
256 KOG2796 Uncharacterized conser 96.5 0.015 3.2E-07 48.8 8.2 92 69-162 191-289 (366)
257 KOG4340 Uncharacterized conser 96.5 0.0076 1.6E-07 51.4 6.4 72 81-154 134-207 (459)
258 KOG1130 Predicted G-alpha GTPa 96.5 0.014 3E-07 51.7 7.9 91 62-154 242-344 (639)
259 PF13281 DUF4071: Domain of un 96.4 0.032 7E-07 48.5 9.7 93 65-158 151-259 (374)
260 COG4976 Predicted methyltransf 96.3 0.0084 1.8E-07 49.2 5.3 57 102-159 7-63 (287)
261 KOG1941 Acetylcholine receptor 96.3 0.0095 2.1E-07 51.9 5.9 92 62-155 129-236 (518)
262 PF12862 Apc5: Anaphase-promot 96.3 0.036 7.8E-07 38.5 7.8 54 102-156 10-72 (94)
263 PF11207 DUF2989: Protein of u 96.3 0.045 9.8E-07 43.8 9.2 74 68-145 119-198 (203)
264 TIGR02561 HrpB1_HrpK type III 96.0 0.19 4.1E-06 38.5 11.0 73 68-142 23-95 (153)
265 KOG2047 mRNA splicing factor [ 96.0 0.042 9.1E-07 50.9 8.6 87 69-156 491-581 (835)
266 PF02259 FAT: FAT domain; Int 96.0 0.13 2.8E-06 42.7 11.1 98 64-163 155-296 (352)
267 PF13374 TPR_10: Tetratricopep 95.9 0.023 5E-07 32.4 4.7 30 89-119 2-31 (42)
268 KOG1914 mRNA cleavage and poly 95.9 0.057 1.2E-06 49.1 8.9 74 79-155 10-83 (656)
269 KOG2047 mRNA splicing factor [ 95.9 0.057 1.2E-06 50.0 9.0 97 69-166 525-628 (835)
270 PF13281 DUF4071: Domain of un 95.9 0.068 1.5E-06 46.5 9.2 90 69-161 240-341 (374)
271 PF09613 HrpB1_HrpK: Bacterial 95.8 0.13 2.7E-06 39.8 9.6 61 102-163 22-82 (160)
272 PF10373 EST1_DNA_bind: Est1 D 95.8 0.029 6.3E-07 45.3 6.2 62 74-136 1-62 (278)
273 KOG0376 Serine-threonine phosp 95.6 0.018 4E-07 51.2 4.6 87 63-156 46-132 (476)
274 KOG2300 Uncharacterized conser 95.5 0.12 2.6E-06 46.5 9.6 96 70-165 24-129 (629)
275 KOG0529 Protein geranylgeranyl 95.5 0.16 3.4E-06 44.7 9.9 92 70-162 90-186 (421)
276 PF10373 EST1_DNA_bind: Est1 D 95.5 0.069 1.5E-06 43.1 7.4 56 109-165 1-56 (278)
277 PF04910 Tcf25: Transcriptiona 95.4 0.22 4.7E-06 43.1 10.6 79 80-160 31-139 (360)
278 COG0790 FOG: TPR repeat, SEL1 95.4 0.35 7.5E-06 39.5 11.5 83 70-156 128-222 (292)
279 smart00386 HAT HAT (Half-A-TPR 95.4 0.055 1.2E-06 29.0 4.6 29 70-98 2-30 (33)
280 KOG1941 Acetylcholine receptor 95.4 0.057 1.2E-06 47.2 6.8 90 64-155 171-276 (518)
281 PF07079 DUF1347: Protein of u 95.3 0.25 5.3E-06 44.3 10.7 48 102-151 474-521 (549)
282 KOG1550 Extracellular protein 95.3 0.23 4.9E-06 45.2 10.8 83 70-156 308-395 (552)
283 COG5191 Uncharacterized conser 95.3 0.014 3.1E-07 49.8 2.8 65 69-133 121-185 (435)
284 PF08631 SPO22: Meiosis protei 95.0 0.66 1.4E-05 38.3 12.1 95 66-162 4-124 (278)
285 KOG1586 Protein required for f 95.0 0.12 2.5E-06 42.8 7.3 53 102-154 85-143 (288)
286 PF04910 Tcf25: Transcriptiona 95.0 0.22 4.7E-06 43.1 9.3 94 64-158 112-226 (360)
287 KOG3364 Membrane protein invol 94.8 0.16 3.5E-06 38.5 7.0 64 69-133 49-114 (149)
288 PF02259 FAT: FAT domain; Int 94.8 0.47 1E-05 39.3 10.8 93 65-158 194-342 (352)
289 PF07720 TPR_3: Tetratricopept 94.8 0.12 2.6E-06 29.9 5.1 31 126-157 3-35 (36)
290 smart00386 HAT HAT (Half-A-TPR 94.8 0.11 2.3E-06 27.8 4.7 31 104-134 1-31 (33)
291 KOG1308 Hsp70-interacting prot 94.7 0.0049 1.1E-07 52.9 -1.4 57 102-159 126-182 (377)
292 KOG1258 mRNA processing protei 94.7 0.45 9.7E-06 43.5 10.8 93 66-160 308-401 (577)
293 PF12968 DUF3856: Domain of Un 94.7 1.1 2.4E-05 33.4 11.0 85 68-154 22-129 (144)
294 KOG0530 Protein farnesyltransf 94.6 0.32 6.9E-06 40.8 8.8 92 69-162 92-184 (318)
295 COG2912 Uncharacterized conser 94.5 0.16 3.5E-06 42.3 7.1 60 102-162 193-252 (269)
296 COG2912 Uncharacterized conser 94.4 0.25 5.4E-06 41.2 8.0 70 64-134 190-259 (269)
297 PF07721 TPR_4: Tetratricopept 94.4 0.056 1.2E-06 28.7 2.8 24 125-149 2-25 (26)
298 KOG2471 TPR repeat-containing 94.4 0.18 4E-06 45.6 7.4 72 64-136 292-381 (696)
299 KOG4507 Uncharacterized conser 94.3 0.051 1.1E-06 50.0 3.9 86 69-156 227-314 (886)
300 KOG3617 WD40 and TPR repeat-co 94.2 0.36 7.9E-06 46.2 9.3 88 65-154 868-996 (1416)
301 COG0790 FOG: TPR repeat, SEL1 94.2 0.84 1.8E-05 37.2 10.7 84 70-159 170-271 (292)
302 KOG1550 Extracellular protein 94.1 0.31 6.8E-06 44.3 8.8 83 68-155 262-358 (552)
303 COG3914 Spy Predicted O-linked 94.1 0.33 7.1E-06 44.5 8.7 93 70-163 46-140 (620)
304 KOG4814 Uncharacterized conser 94.1 0.43 9.4E-06 44.4 9.5 88 65-154 364-457 (872)
305 COG3898 Uncharacterized membra 94.1 0.97 2.1E-05 40.0 11.2 53 105-158 244-296 (531)
306 PF07720 TPR_3: Tetratricopept 94.1 0.22 4.8E-06 28.8 5.1 34 89-123 1-36 (36)
307 COG3629 DnrI DNA-binding trans 93.9 0.5 1.1E-05 39.7 8.9 80 71-154 137-216 (280)
308 PF10602 RPN7: 26S proteasome 93.8 0.54 1.2E-05 36.5 8.3 91 63-155 44-143 (177)
309 COG3898 Uncharacterized membra 93.7 0.85 1.8E-05 40.4 10.1 94 63-161 271-365 (531)
310 PF12862 Apc5: Anaphase-promot 93.5 0.52 1.1E-05 32.5 7.1 55 66-121 9-72 (94)
311 PRK13184 pknD serine/threonine 93.4 0.51 1.1E-05 45.7 9.1 95 64-160 484-587 (932)
312 KOG0546 HSP90 co-chaperone CPR 93.4 0.071 1.5E-06 46.0 3.1 98 64-163 231-347 (372)
313 KOG2422 Uncharacterized conser 93.4 1.2 2.5E-05 41.1 10.7 90 66-157 353-451 (665)
314 PF11846 DUF3366: Domain of un 93.3 0.67 1.5E-05 36.0 8.3 54 106-161 127-180 (193)
315 TIGR02561 HrpB1_HrpK type III 93.1 0.98 2.1E-05 34.6 8.5 60 102-162 22-81 (153)
316 COG3118 Thioredoxin domain-con 92.8 1.4 3.1E-05 37.3 9.9 48 102-150 146-193 (304)
317 COG4455 ImpE Protein of avirul 92.6 1.4 3.1E-05 36.2 9.3 59 66-125 12-70 (273)
318 PF10345 Cohesin_load: Cohesin 92.6 1.3 2.9E-05 40.6 10.3 85 71-157 37-131 (608)
319 KOG3617 WD40 and TPR repeat-co 92.3 0.62 1.4E-05 44.7 7.8 62 90-153 859-940 (1416)
320 KOG0529 Protein geranylgeranyl 92.1 1.6 3.5E-05 38.5 9.6 91 71-162 45-148 (421)
321 KOG0545 Aryl-hydrocarbon recep 92.0 0.6 1.3E-05 39.0 6.5 65 63-128 238-302 (329)
322 KOG1914 mRNA cleavage and poly 91.4 2.3 5E-05 39.0 10.1 83 71-154 382-464 (656)
323 PF10516 SHNi-TPR: SHNi-TPR; 91.3 0.41 8.9E-06 28.1 3.6 29 125-154 2-30 (38)
324 KOG3973 Uncharacterized conser 91.3 0.19 4.1E-06 43.4 3.0 19 31-49 357-375 (465)
325 PF08311 Mad3_BUB1_I: Mad3/BUB 91.2 1.7 3.7E-05 31.9 7.7 74 71-152 42-126 (126)
326 PF07721 TPR_4: Tetratricopept 91.2 0.31 6.8E-06 25.7 2.8 26 89-115 1-26 (26)
327 PF00244 14-3-3: 14-3-3 protei 90.8 1.1 2.4E-05 36.5 6.9 48 71-118 142-197 (236)
328 KOG3807 Predicted membrane pro 90.6 1.9 4.2E-05 37.6 8.5 82 71-156 200-306 (556)
329 smart00101 14_3_3 14-3-3 homol 90.5 1.3 2.8E-05 36.5 7.2 48 71-118 144-199 (244)
330 KOG1585 Protein required for f 90.5 3 6.6E-05 34.9 9.2 82 69-153 85-178 (308)
331 PF10602 RPN7: 26S proteasome 90.2 2.1 4.5E-05 33.2 7.8 64 89-154 36-102 (177)
332 COG2976 Uncharacterized protei 90.1 3.9 8.4E-05 32.8 9.2 54 95-151 95-152 (207)
333 PF04781 DUF627: Protein of un 89.9 2 4.3E-05 31.2 6.9 67 96-163 3-82 (111)
334 COG3629 DnrI DNA-binding trans 89.9 2.3 5E-05 35.7 8.3 55 64-119 162-216 (280)
335 COG4455 ImpE Protein of avirul 89.9 1.4 3E-05 36.3 6.7 57 102-159 13-69 (273)
336 KOG4814 Uncharacterized conser 89.9 1.3 2.9E-05 41.3 7.3 63 96-160 361-429 (872)
337 COG5107 RNA14 Pre-mRNA 3'-end 89.9 1.8 3.9E-05 39.1 7.9 79 76-156 29-107 (660)
338 PF10579 Rapsyn_N: Rapsyn N-te 89.9 1.9 4.2E-05 29.5 6.4 52 102-154 18-72 (80)
339 cd02680 MIT_calpain7_2 MIT: do 89.7 0.78 1.7E-05 31.0 4.4 18 102-119 18-35 (75)
340 KOG1258 mRNA processing protei 89.6 3.7 8.1E-05 37.7 9.9 88 69-157 59-146 (577)
341 PF10579 Rapsyn_N: Rapsyn N-te 89.6 2.2 4.7E-05 29.2 6.5 52 67-119 18-72 (80)
342 PRK15490 Vi polysaccharide bio 89.4 2 4.4E-05 39.5 8.2 80 66-149 19-98 (578)
343 TIGR02996 rpt_mate_G_obs repea 89.3 0.91 2E-05 27.3 4.0 32 112-144 4-35 (42)
344 KOG0551 Hsp90 co-chaperone CNS 89.1 2.4 5.3E-05 36.7 7.9 70 90-161 82-155 (390)
345 COG3947 Response regulator con 89.0 0.79 1.7E-05 39.1 4.9 55 96-152 286-340 (361)
346 cd02681 MIT_calpain7_1 MIT: do 88.7 1 2.2E-05 30.5 4.4 19 101-119 17-35 (76)
347 COG3947 Response regulator con 88.5 2.2 4.7E-05 36.5 7.1 31 128-159 283-313 (361)
348 PF09986 DUF2225: Uncharacteri 88.4 3.9 8.5E-05 32.8 8.4 64 71-135 141-211 (214)
349 PF02184 HAT: HAT (Half-A-TPR) 88.4 1.1 2.4E-05 25.4 3.7 28 70-98 2-29 (32)
350 COG4941 Predicted RNA polymera 87.9 3.6 7.7E-05 35.8 8.1 89 69-160 310-400 (415)
351 COG2909 MalT ATP-dependent tra 87.8 7 0.00015 37.7 10.7 86 67-154 427-526 (894)
352 PF04212 MIT: MIT (microtubule 87.2 1.5 3.3E-05 28.4 4.5 18 101-118 16-33 (69)
353 COG4649 Uncharacterized protei 86.8 7.1 0.00015 31.1 8.6 83 69-153 72-195 (221)
354 TIGR03504 FimV_Cterm FimV C-te 86.6 1.5 3.2E-05 26.5 3.8 25 128-153 3-27 (44)
355 PF11846 DUF3366: Domain of un 86.5 6.1 0.00013 30.5 8.3 52 70-123 126-177 (193)
356 PF08631 SPO22: Meiosis protei 86.3 13 0.00029 30.5 10.7 88 67-156 47-152 (278)
357 KOG2300 Uncharacterized conser 85.9 3.5 7.6E-05 37.5 7.3 84 64-148 56-150 (629)
358 cd02683 MIT_1 MIT: domain cont 85.8 2 4.3E-05 29.0 4.5 18 101-118 17-34 (77)
359 PF15015 NYD-SP12_N: Spermatog 85.8 4 8.6E-05 36.6 7.5 86 64-151 185-288 (569)
360 COG5107 RNA14 Pre-mRNA 3'-end 85.6 11 0.00025 34.2 10.2 89 67-157 444-534 (660)
361 smart00101 14_3_3 14-3-3 homol 85.6 4.5 9.7E-05 33.3 7.4 48 106-153 144-199 (244)
362 PF10345 Cohesin_load: Cohesin 85.1 18 0.00039 33.2 11.9 93 67-162 72-178 (608)
363 PF11207 DUF2989: Protein of u 84.8 2.6 5.6E-05 33.8 5.5 45 65-110 150-198 (203)
364 PF09205 DUF1955: Domain of un 84.7 12 0.00027 28.5 8.7 53 102-155 98-150 (161)
365 PF04053 Coatomer_WDAD: Coatom 84.6 7.8 0.00017 34.5 8.9 59 92-152 298-374 (443)
366 PF07079 DUF1347: Protein of u 84.5 3.6 7.8E-05 37.1 6.7 71 63-136 470-540 (549)
367 PHA02537 M terminase endonucle 84.5 1.6 3.4E-05 35.7 4.2 92 64-157 92-210 (230)
368 PRK13184 pknD serine/threonine 84.4 6.4 0.00014 38.4 8.9 88 70-159 534-625 (932)
369 PF13226 DUF4034: Domain of un 84.4 7.7 0.00017 32.6 8.3 98 65-162 10-136 (277)
370 PF14863 Alkyl_sulf_dimr: Alky 84.1 4.9 0.00011 30.3 6.4 53 88-142 69-121 (141)
371 PF12854 PPR_1: PPR repeat 83.6 3.5 7.7E-05 23.0 4.3 26 124-150 7-32 (34)
372 KOG4014 Uncharacterized conser 83.5 9.5 0.00021 30.7 8.1 82 70-155 127-234 (248)
373 PF02184 HAT: HAT (Half-A-TPR) 83.3 2.9 6.3E-05 23.7 3.7 27 105-132 2-28 (32)
374 PRK15180 Vi polysaccharide bio 82.9 10 0.00022 34.8 8.8 46 69-115 303-348 (831)
375 PF00244 14-3-3: 14-3-3 protei 82.7 2.8 6E-05 34.1 5.0 49 106-154 142-198 (236)
376 cd02678 MIT_VPS4 MIT: domain c 82.6 3.4 7.3E-05 27.4 4.6 19 101-119 17-35 (75)
377 PF04190 DUF410: Protein of un 82.3 6.9 0.00015 32.2 7.3 63 86-149 46-114 (260)
378 cd02679 MIT_spastin MIT: domai 81.9 3.7 8.1E-05 27.9 4.6 18 102-119 20-37 (79)
379 COG5536 BET4 Protein prenyltra 81.9 2.4 5.3E-05 35.9 4.4 95 69-165 88-190 (328)
380 cd02684 MIT_2 MIT: domain cont 81.8 3.5 7.6E-05 27.6 4.4 19 101-119 17-35 (75)
381 KOG3783 Uncharacterized conser 81.8 7.1 0.00015 35.7 7.5 82 72-155 250-333 (546)
382 smart00299 CLH Clathrin heavy 81.7 16 0.00035 26.3 8.4 47 66-114 18-64 (140)
383 PLN03138 Protein TOC75; Provis 81.0 1.3 2.8E-05 42.3 2.7 17 108-124 165-181 (796)
384 KOG4279 Serine/threonine prote 80.9 3.8 8.3E-05 39.2 5.7 92 68-161 300-402 (1226)
385 PF09797 NatB_MDM20: N-acetylt 80.6 13 0.00029 31.7 8.7 46 105-151 198-243 (365)
386 smart00745 MIT Microtubule Int 79.9 4.9 0.00011 26.4 4.6 19 101-119 19-37 (77)
387 KOG2581 26S proteasome regulat 79.7 4.8 0.0001 35.8 5.6 56 102-158 221-280 (493)
388 PF13041 PPR_2: PPR repeat fam 79.6 6.9 0.00015 23.2 4.9 17 102-118 15-31 (50)
389 PF11817 Foie-gras_1: Foie gra 79.2 15 0.00033 29.7 8.2 81 70-152 153-245 (247)
390 cd02682 MIT_AAA_Arch MIT: doma 78.9 8.8 0.00019 25.9 5.6 46 72-126 4-49 (75)
391 smart00671 SEL1 Sel1-like repe 78.8 4.8 0.0001 21.8 3.7 14 140-153 20-33 (36)
392 PF14852 Fis1_TPR_N: Fis1 N-te 78.5 4 8.7E-05 23.4 3.3 31 125-156 2-35 (35)
393 cd02682 MIT_AAA_Arch MIT: doma 78.3 4.4 9.6E-05 27.3 4.0 17 143-159 31-47 (75)
394 PF08238 Sel1: Sel1 repeat; I 78.1 6.5 0.00014 21.7 4.2 13 141-153 24-36 (39)
395 PF10516 SHNi-TPR: SHNi-TPR; 77.6 5.2 0.00011 23.3 3.7 29 90-119 2-30 (38)
396 KOG4014 Uncharacterized conser 77.3 19 0.0004 29.1 7.8 83 69-155 87-198 (248)
397 cd02677 MIT_SNX15 MIT: domain 76.9 4.3 9.3E-05 27.2 3.6 18 102-119 18-35 (75)
398 cd02680 MIT_calpain7_2 MIT: do 76.8 6.4 0.00014 26.5 4.4 15 71-85 3-17 (75)
399 cd02656 MIT MIT: domain contai 76.5 7.1 0.00015 25.6 4.6 18 101-118 17-34 (75)
400 cd02681 MIT_calpain7_1 MIT: do 76.3 6.6 0.00014 26.4 4.4 45 72-125 4-48 (76)
401 KOG3783 Uncharacterized conser 75.9 20 0.00044 32.8 8.6 65 92-158 452-524 (546)
402 KOG2422 Uncharacterized conser 75.8 28 0.0006 32.4 9.4 60 102-161 354-419 (665)
403 TIGR02996 rpt_mate_G_obs repea 75.5 8.3 0.00018 23.2 4.2 34 76-110 3-36 (42)
404 PF04212 MIT: MIT (microtubule 75.2 11 0.00024 24.2 5.2 44 71-123 2-45 (69)
405 KOG0890 Protein kinase of the 74.3 27 0.00058 37.3 9.8 51 67-120 1682-1732(2382)
406 PF09797 NatB_MDM20: N-acetylt 73.9 13 0.00029 31.7 6.8 45 70-115 198-242 (365)
407 KOG1310 WD40 repeat protein [G 73.6 4.9 0.00011 37.1 4.1 56 69-125 425-480 (758)
408 PF05053 Menin: Menin; InterP 73.4 19 0.00041 33.3 7.8 65 88-153 276-346 (618)
409 KOG3616 Selective LIM binding 73.4 13 0.00028 36.0 6.8 51 62-113 668-729 (1636)
410 PF12854 PPR_1: PPR repeat 73.3 9.7 0.00021 21.1 4.0 26 89-115 7-32 (34)
411 PLN03138 Protein TOC75; Provis 72.9 2.7 5.8E-05 40.1 2.4 13 75-87 167-179 (796)
412 TIGR03504 FimV_Cterm FimV C-te 72.7 9 0.00019 23.0 3.9 25 93-118 3-27 (44)
413 PF01239 PPTA: Protein prenylt 72.6 13 0.00028 20.0 4.6 20 111-130 4-23 (31)
414 KOG0546 HSP90 co-chaperone CPR 72.4 5.2 0.00011 34.8 3.8 66 70-136 290-355 (372)
415 KOG1839 Uncharacterized protei 72.0 8 0.00017 38.6 5.4 89 64-154 982-1086(1236)
416 PF04053 Coatomer_WDAD: Coatom 72.0 17 0.00036 32.4 7.1 31 85-116 343-373 (443)
417 PF01535 PPR: PPR repeat; Int 71.5 7.7 0.00017 20.0 3.2 24 129-153 5-28 (31)
418 cd02679 MIT_spastin MIT: domai 71.5 9.5 0.00021 25.9 4.3 43 69-120 3-45 (79)
419 PF04190 DUF410: Protein of un 71.3 52 0.0011 27.0 9.5 67 87-154 88-170 (260)
420 PHA00370 III attachment protei 71.2 18 0.0004 30.1 6.6 14 71-84 148-161 (297)
421 PRK15180 Vi polysaccharide bio 71.1 27 0.00058 32.2 8.1 90 69-159 712-811 (831)
422 KOG0890 Protein kinase of the 71.1 39 0.00085 36.2 10.1 81 71-155 1645-1732(2382)
423 PF09205 DUF1955: Domain of un 71.0 21 0.00046 27.3 6.4 53 66-119 97-149 (161)
424 KOG1839 Uncharacterized protei 70.0 8.5 0.00018 38.5 5.1 82 71-154 954-1044(1236)
425 TIGR00756 PPR pentatricopeptid 70.0 13 0.00029 19.3 4.0 26 128-154 4-29 (35)
426 PF13226 DUF4034: Domain of un 69.7 35 0.00075 28.7 8.1 61 74-134 62-143 (277)
427 PRK15326 type III secretion sy 69.4 33 0.00072 23.4 6.8 28 104-131 21-48 (80)
428 PF12968 DUF3856: Domain of Un 69.4 19 0.00041 27.0 5.8 51 102-153 21-83 (144)
429 PRK15326 type III secretion sy 68.6 12 0.00025 25.7 4.2 29 138-166 20-48 (80)
430 KOG0128 RNA-binding protein SA 68.4 62 0.0013 31.3 10.2 84 70-154 94-179 (881)
431 cd02677 MIT_SNX15 MIT: domain 68.1 9.3 0.0002 25.6 3.6 43 71-122 3-45 (75)
432 COG2909 MalT ATP-dependent tra 67.9 35 0.00075 33.2 8.5 69 90-160 416-493 (894)
433 cd00280 TRFH Telomeric Repeat 67.7 62 0.0013 25.9 8.8 65 71-136 85-156 (200)
434 KOG2908 26S proteasome regulat 67.2 49 0.0011 28.9 8.6 78 88-166 73-160 (380)
435 PF10255 Paf67: RNA polymerase 67.0 13 0.00029 32.8 5.3 57 95-153 128-192 (404)
436 cd02684 MIT_2 MIT: domain cont 66.8 16 0.00035 24.3 4.6 45 70-123 2-46 (75)
437 KOG0985 Vesicle coat protein c 66.6 49 0.0011 33.2 9.3 61 87-154 1102-1162(1666)
438 PF09670 Cas_Cas02710: CRISPR- 66.2 89 0.0019 27.1 11.3 53 66-118 142-197 (379)
439 COG5536 BET4 Protein prenyltra 65.9 12 0.00025 31.9 4.6 92 71-163 126-231 (328)
440 PF13041 PPR_2: PPR repeat fam 65.7 25 0.00055 20.7 6.1 30 124-154 3-32 (50)
441 PF10952 DUF2753: Protein of u 65.5 45 0.00099 25.0 7.1 25 126-151 52-76 (140)
442 PF06957 COPI_C: Coatomer (COP 65.3 15 0.00033 32.6 5.4 96 65-160 214-335 (422)
443 PF14863 Alkyl_sulf_dimr: Alky 64.0 26 0.00057 26.3 5.8 38 124-162 70-107 (141)
444 COG1512 Beta-propeller domains 63.2 8.9 0.00019 32.1 3.4 6 22-27 226-231 (271)
445 cd02678 MIT_VPS4 MIT: domain c 63.1 25 0.00055 23.1 5.0 44 71-123 3-46 (75)
446 PF12583 TPPII_N: Tripeptidyl 62.9 16 0.00034 27.5 4.3 34 102-135 88-121 (139)
447 KOG4151 Myosin assembly protei 62.6 15 0.00032 35.0 5.0 98 62-160 60-162 (748)
448 COG1747 Uncharacterized N-term 62.4 83 0.0018 29.2 9.5 82 68-154 79-160 (711)
449 PF09670 Cas_Cas02710: CRISPR- 62.1 80 0.0017 27.4 9.3 58 95-154 137-198 (379)
450 KOG0567 HEAT repeat-containing 61.9 80 0.0017 26.6 8.7 74 72-151 186-259 (289)
451 PF15015 NYD-SP12_N: Spermatog 60.4 46 0.001 30.1 7.4 53 64-117 237-289 (569)
452 KOG0276 Vesicle coat complex C 60.1 75 0.0016 30.0 8.9 65 85-151 662-747 (794)
453 PF13812 PPR_3: Pentatricopept 59.6 24 0.00053 18.4 4.3 26 127-153 4-29 (34)
454 PF12753 Nro1: Nuclear pore co 58.9 15 0.00032 32.5 4.1 57 106-165 334-403 (404)
455 PRK11619 lytic murein transgly 58.8 69 0.0015 30.0 8.7 51 102-153 324-374 (644)
456 COG1747 Uncharacterized N-term 57.6 1.4E+02 0.0031 27.8 10.1 95 65-162 109-242 (711)
457 KOG0276 Vesicle coat complex C 57.5 36 0.00079 32.0 6.5 71 73-154 625-695 (794)
458 KOG3807 Predicted membrane pro 57.4 94 0.002 27.5 8.6 95 67-162 287-399 (556)
459 PF13934 ELYS: Nuclear pore co 57.2 88 0.0019 25.1 8.2 80 64-151 87-166 (226)
460 PF15469 Sec5: Exocyst complex 56.5 86 0.0019 23.9 7.8 20 139-158 153-172 (182)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 56.4 63 0.0014 23.5 6.6 44 73-117 81-126 (126)
462 PRK15490 Vi polysaccharide bio 55.0 44 0.00095 31.0 6.6 59 102-161 20-78 (578)
463 PF02064 MAS20: MAS20 protein 54.7 30 0.00065 25.4 4.6 33 129-162 68-100 (121)
464 PF12753 Nro1: Nuclear pore co 54.5 20 0.00043 31.7 4.2 46 71-119 334-391 (404)
465 PF09477 Type_III_YscG: Bacter 54.2 84 0.0018 23.0 7.4 81 69-157 20-102 (116)
466 PF12583 TPPII_N: Tripeptidyl 53.6 50 0.0011 24.9 5.6 30 70-99 91-120 (139)
467 COG3107 LppC Putative lipoprot 53.2 1.1E+02 0.0024 28.4 8.7 88 64-152 37-126 (604)
468 KOG2997 F-box protein FBX9 [Ge 53.2 20 0.00044 30.9 3.9 43 70-128 15-57 (366)
469 KOG2581 26S proteasome regulat 53.0 18 0.00039 32.3 3.6 56 68-124 222-281 (493)
470 PF11817 Foie-gras_1: Foie gra 50.7 59 0.0013 26.3 6.2 53 63-116 186-244 (247)
471 cd02683 MIT_1 MIT: domain cont 50.6 73 0.0016 21.2 5.8 45 71-124 3-47 (77)
472 KOG0128 RNA-binding protein SA 50.5 22 0.00048 34.2 4.0 87 74-161 297-383 (881)
473 PF07219 HemY_N: HemY protein 50.4 86 0.0019 22.0 7.0 17 103-119 72-88 (108)
474 PF15297 CKAP2_C: Cytoskeleton 49.7 1.3E+02 0.0029 26.1 8.4 33 89-122 140-172 (353)
475 KOG1464 COP9 signalosome, subu 49.6 1.7E+02 0.0037 25.2 10.3 48 69-117 41-92 (440)
476 KOG2114 Vacuolar assembly/sort 48.8 53 0.0011 31.9 6.2 21 63-83 376-396 (933)
477 KOG3262 H/ACA small nucleolar 48.1 31 0.00066 27.5 3.9 14 29-42 6-19 (215)
478 cd00280 TRFH Telomeric Repeat 48.0 40 0.00087 26.9 4.6 36 64-100 120-155 (200)
479 PF14689 SPOB_a: Sensor_kinase 47.4 54 0.0012 20.8 4.5 20 133-153 32-51 (62)
480 KOG2908 26S proteasome regulat 47.3 1.7E+02 0.0037 25.6 8.6 77 69-147 89-179 (380)
481 KOG1464 COP9 signalosome, subu 46.1 78 0.0017 27.2 6.3 50 103-153 40-93 (440)
482 KOG3616 Selective LIM binding 45.3 46 0.001 32.4 5.3 39 86-125 992-1030(1636)
483 COG5091 SGT1 Suppressor of G2 45.0 42 0.00091 28.6 4.5 89 69-158 9-112 (368)
484 KOG1524 WD40 repeat-containing 44.9 86 0.0019 29.2 6.7 79 65-150 583-669 (737)
485 PF13646 HEAT_2: HEAT repeats; 44.5 84 0.0018 20.2 8.4 74 77-157 3-76 (88)
486 COG3014 Uncharacterized protei 43.9 2.1E+02 0.0046 25.3 8.7 42 122-164 211-252 (449)
487 KOG1538 Uncharacterized conser 43.8 68 0.0015 30.7 6.0 28 124-152 804-831 (1081)
488 KOG3024 Uncharacterized conser 43.7 1.2E+02 0.0027 25.8 7.1 43 107-150 103-152 (312)
489 PF00637 Clathrin: Region in C 43.1 8.8 0.00019 27.7 0.2 50 64-114 16-66 (143)
490 KOG2114 Vacuolar assembly/sort 43.1 33 0.00071 33.2 4.0 30 124-154 368-397 (933)
491 PRK07003 DNA polymerase III su 42.9 3.3E+02 0.0071 26.6 10.6 102 64-167 207-332 (830)
492 KOG0292 Vesicle coat complex C 42.9 1.8E+02 0.0038 28.9 8.7 97 65-161 1001-1120(1202)
493 KOG0889 Histone acetyltransfer 42.8 1.2E+02 0.0025 34.2 8.1 107 60-167 2724-2854(3550)
494 KOG3074 Transcriptional regula 42.4 18 0.00038 29.8 1.9 20 29-48 1-20 (263)
495 KOG0985 Vesicle coat protein c 42.3 1.1E+02 0.0024 30.9 7.4 76 62-151 1055-1130(1666)
496 COG4259 Uncharacterized protei 42.2 1.3E+02 0.0029 21.8 6.1 61 105-166 52-113 (121)
497 COG3416 Uncharacterized protei 42.0 87 0.0019 25.4 5.7 48 107-154 26-73 (233)
498 PF12931 Sec16_C: Sec23-bindin 41.4 1.1E+02 0.0024 25.4 6.6 43 111-154 177-227 (284)
499 TIGR01987 HI0074 nucleotidyltr 41.3 1.4E+02 0.003 21.8 6.8 98 67-165 1-121 (123)
500 smart00777 Mad3_BUB1_I Mad3/BU 41.2 1.4E+02 0.0031 21.9 8.5 76 71-150 49-124 (125)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=1.2e-16 Score=120.45 Aligned_cols=100 Identities=13% Similarity=-0.022 Sum_probs=94.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.++..++++++|+.+|++++.++|.++.++.++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence 46678899999999999999999999999999999987 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|++.|++|+++.|+++.++.+
T Consensus 110 eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 110 LAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999877643
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=126.57 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=93.3
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
.++.++|.+|+..|.+||+++|+|+.++.|.|.+|. +.+.++.|++-|+.||.+||+...+|..|+.++.. +|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHH
Confidence 456689999999999999999999999999999997 89999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHhc
Q 046296 145 ESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~y 165 (167)
++.|++||.++|+|..+..++
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999766543
No 3
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.60 E-value=1.4e-14 Score=120.70 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=91.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|.+.+++++|+..|+++++++|+++.++++++.++. ..+++++|+..|++|++++|+++.++.++|.+++. .++++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 46778899999999999999999999999999999886 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 046296 143 RAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~ 160 (167)
+|++.|+++++++|+++.
T Consensus 150 eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 150 LAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 999999999999999984
No 4
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.59 E-value=2.2e-14 Score=122.71 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=93.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
+.++..+++++|+.+|++||+++|+++.+++++|.++. ..+++++|+..+++||+++|+++.+++++|.+++. +++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHH
Confidence 45677889999999999999999999999999999987 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~ 163 (167)
+|+.+|+++++++|+++.+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999987653
No 5
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.59 E-value=2.2e-14 Score=104.78 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=92.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..|...+++++|+..|+++++++|.++.++.+++.++. ..+++++|+.+|+++++++|.++.+++++|.++.. .++++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence 46777899999999999999999999999999999987 78999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l 162 (167)
+|+++|+++++++|+++...
T Consensus 103 ~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 103 SALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhccccchHH
Confidence 99999999999999987643
No 6
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=2.7e-14 Score=113.08 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=60.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd--~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+|...+++++|+.+|+++++++|+++.++.++|.+++...++ +++|++++++|++++|+++.+++++|..+++ +|++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~ 160 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADY 160 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCH
Confidence 455666666666666666666666666666666654324444 3666666666666666666666666666666 6666
Q ss_pred HHHHHHHHHHHHhCCCC
Q 046296 142 SRAESYFDQAVKSAPDD 158 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~ 158 (167)
++|+.+|++++++.|.+
T Consensus 161 ~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 161 AQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 66666666666666644
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=2.8e-14 Score=127.98 Aligned_cols=102 Identities=21% Similarity=0.134 Sum_probs=87.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|.+++++++|+.+|++||++.|+.+.++.|++.++. .+++...|+++|.+||.++|..++++.+||.++.. .|+..
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~ 473 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNIP 473 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcH
Confidence 46777888889999999999999999999999988887 68888899999999999999999999999888888 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhcc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKLY 166 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~yy 166 (167)
+|++.|+.||++.|+.|.+..|+.
T Consensus 474 ~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 474 EAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999998887766653
No 8
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=3.3e-13 Score=106.89 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCC--HHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI-WQAHKD--ASRA 144 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l-~~~~g~--~~eA 144 (167)
..+.++++..++++|+.+|+|+..|..++.++. ..+++++|+.+|++|++++|+++.++..+|.++ +. .++ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~-~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ-AGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCCCcHHH
Confidence 467899999999999999999999999999886 899999999999999999999999999999986 45 677 5999
Q ss_pred HHHHHHHHHhCCCCHHHHHhc
Q 046296 145 ESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~y 165 (167)
+++++++++++|+++.++.++
T Consensus 130 ~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 130 REMIDKALALDANEVTALMLL 150 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHH
Confidence 999999999999999887654
No 9
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=2.6e-13 Score=103.95 Aligned_cols=89 Identities=8% Similarity=-0.072 Sum_probs=85.5
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
+...+++++|+..|+-++.++|.++..|++||.++. .++++++|+..|.+|+.++|++|.++.++|.+++. .|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHH
Confidence 456789999999999999999999999999999997 89999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhC
Q 046296 145 ESYFDQAVKSA 155 (167)
Q Consensus 145 ~~~~e~Al~l~ 155 (167)
++.|+.||...
T Consensus 123 ~~aF~~Ai~~~ 133 (157)
T PRK15363 123 IKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=9.9e-14 Score=124.48 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=91.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
-+|..+|.++-|+..|++||+++|+.+.+++|+|+.|. ..|+..+|+.+|.+||.+.|++++++++||.++.+ ++.++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e 371 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIE 371 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccch
Confidence 46888999999999999999999999999999999997 68999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+|..+|++|++..|.-..++.|+
T Consensus 372 ~A~~ly~~al~v~p~~aaa~nNL 394 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEFAAAHNNL 394 (966)
T ss_pred HHHHHHHHHHhhChhhhhhhhhH
Confidence 99999999999988877776654
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=1.9e-13 Score=110.28 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=79.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
-|++++++..|..-+++||+++|+++.+|..+|.++. ..++.+.|.+.|++|+.++|++.++++|||.+|.. +|+|++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHH
Confidence 4778889999999999999999999999999988775 88999999999999999999999999999999888 888888
Q ss_pred HHHHHHHHHHhCCCC
Q 046296 144 AESYFDQAVKSAPDD 158 (167)
Q Consensus 144 A~~~~e~Al~l~P~~ 158 (167)
|.++|++|+.. |..
T Consensus 122 A~q~F~~Al~~-P~Y 135 (250)
T COG3063 122 AMQQFERALAD-PAY 135 (250)
T ss_pred HHHHHHHHHhC-CCC
Confidence 88888888874 543
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=1.6e-13 Score=110.66 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=90.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~ 140 (167)
.+|.+.++.+.|.+.|++||+++|++..+++||+.||+ .++++++|...|++|+.. -|..+.++.|+++|..+ +|+
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq 154 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQ 154 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCC
Confidence 46888899999999999999999999999999999999 799999999999999963 24567889999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 046296 141 ASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
++.|..+|+++|+++|+++..+.
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHH
Confidence 99999999999999999987653
No 13
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.48 E-value=1.4e-12 Score=92.16 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=90.3
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~ 136 (167)
..+.+++++++|+..|+++++.+|++ +.+++.++.++. ..+++++|+.+|++++..+|++ +.++..++.++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 46778899999999999999999987 578889999987 7999999999999999999886 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 137 AHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
++++++|+.+|+++++..|+++.+..
T Consensus 89 -~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 89 -LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred -hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999987653
No 14
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.48 E-value=5.7e-13 Score=86.97 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=87.2
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..|...+++++|+..|+++++..|+++.++..++.++. ..+++++|+.+|++++.+.|.+..++..++.++.. .++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence 45677899999999999999999999999999999987 78999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCC
Q 046296 143 RAESYFDQAVKSAPD 157 (167)
Q Consensus 143 eA~~~~e~Al~l~P~ 157 (167)
+|+.++++++++.|+
T Consensus 86 ~a~~~~~~~~~~~~~ 100 (100)
T cd00189 86 EALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHccCCC
Confidence 999999999999884
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=5.9e-13 Score=119.56 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=86.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
.+++++|+.++++|++++|+++.++..++.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. +|++++|+.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 357899999999999999999999999998886 79999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCCHHH
Q 046296 148 FDQAVKSAPDDWLN 161 (167)
Q Consensus 148 ~e~Al~l~P~~~~~ 161 (167)
|++|++++|.++.+
T Consensus 395 ~~~Al~l~P~~~~~ 408 (553)
T PRK12370 395 INECLKLDPTRAAA 408 (553)
T ss_pred HHHHHhcCCCChhh
Confidence 99999999998754
No 16
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=3.5e-13 Score=88.22 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 046296 87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP 156 (167)
Q Consensus 87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-~~~eA~~~~e~Al~l~P 156 (167)
+++.+|..+|.++. ..+++++|+.+|++||+++|+++.+++++|.+++. ++ ++++|+++|++||+++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 46889999999997 89999999999999999999999999999999999 99 79999999999999998
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=8.3e-13 Score=119.51 Aligned_cols=99 Identities=22% Similarity=0.161 Sum_probs=84.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|..++++++|+.+|+++|+++|+++.++..++.++. ..+++++|+.+|+++++++|+++.+++++|.+++. .++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 416 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA 416 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 45667788888999899988888888888888888876 68888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~ 163 (167)
+|+.+|+++++++|++..++.
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHH
Confidence 888888888888888876654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1.3e-12 Score=118.21 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=86.7
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|...+++++|+.+|+++++++|+++.+++.++.++. ..+++++|+.+|+++++++|++..++.++|.+++. +++++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHH
Confidence 35667788999999999999999999999999998886 78999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|+.+|++++++.|+++.++.+
T Consensus 451 eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 451 SSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred HHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999988866543
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=7.8e-13 Score=99.54 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
-+.+|+++++++|++ +..++.++. ..+++++|+.+|++++.++|.++.++..+|.++.. .+++++|+..|++|++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 467899999999986 456788886 79999999999999999999999999999999999 9999999999999999
Q ss_pred hCCCCHHHHHhc
Q 046296 154 SAPDDWLNLIKL 165 (167)
Q Consensus 154 l~P~~~~~l~~y 165 (167)
++|+++.++.++
T Consensus 87 l~p~~~~a~~~l 98 (144)
T PRK15359 87 LDASHPEPVYQT 98 (144)
T ss_pred cCCCCcHHHHHH
Confidence 999999887654
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.42 E-value=1.7e-12 Score=123.48 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=64.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
++.+.+++++|+.+|+++++++|+++.++++++.++. ..+++++|+++|++|++++|+++.++.++|.++.. +|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence 4555566666676777777777777766666666665 56667777777777777777777777777776666 677777
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 046296 144 AESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~ 161 (167)
|+.+|++|++++|++..+
T Consensus 696 A~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 696 TQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHHHHHhcCCCCchh
Confidence 777777777776666443
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=3.2e-12 Score=114.82 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=88.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.++...+++++|+.+|++|++++|+++.+++.++.++. ..+++++|+.++++|++++|.++.++..++.+++. .++++
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~e 423 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGID 423 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHH
Confidence 35667899999999999999999999999999999987 89999999999999999999999887777777888 89999
Q ss_pred HHHHHHHHHHHhC-CCCHHHHH
Q 046296 143 RAESYFDQAVKSA-PDDWLNLI 163 (167)
Q Consensus 143 eA~~~~e~Al~l~-P~~~~~l~ 163 (167)
+|+.+++++++.. |+++.++.
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHH
Confidence 9999999999885 77776543
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=6.5e-13 Score=108.86 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=88.5
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|.+.|+.++|+.+|+++|+++|+|+.++..++.++. ..++++++.+.+++..+..|.++..+..+|.+++. .++++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~ 231 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYE 231 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccc
Confidence 46778899999999999999999999999999998886 78999999999999999989999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+|+.+|+++++.+|+|+.++..|
T Consensus 232 ~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 232 EALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHH
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999888665
No 23
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=5.9e-12 Score=116.05 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=94.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+..+.+.+++|+.+++++++++|++..++.+++.+|. +.+++++|+..+++++..+|+++.+++.+|.++.+ .|++++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHH
Confidence 3456789999999999999999999999999999998 89999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHhc
Q 046296 144 AESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~y 165 (167)
|+.+|+++++.+|+++.++.++
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999999888765
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.7e-11 Score=93.91 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=81.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..|...+++++|+..|+++++.+|+++.++..++.++. ..+++++|+++++++++++|.++.++.+++.++.. +++++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence 45667889999999999999999999999999998886 78999999999999999999999999999988888 88888
Q ss_pred HHHHHHHHHHHhC
Q 046296 143 RAESYFDQAVKSA 155 (167)
Q Consensus 143 eA~~~~e~Al~l~ 155 (167)
+|+++|+++++..
T Consensus 117 ~A~~~~~~~~~~~ 129 (234)
T TIGR02521 117 QAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888888753
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=9.4e-12 Score=118.47 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
+++++|+..|+++++++|+ +.++.+++.++. ..+++++|+.+|++|++++|+++.++.++|.++.. ++++++|+++|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 8999999999999999996 999999999987 89999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHhc
Q 046296 149 DQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 149 e~Al~l~P~~~~~l~~y 165 (167)
++|++++|+++.++.++
T Consensus 667 ~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 667 ERAHKGLPDDPALIRQL 683 (987)
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 99999999999887654
No 26
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.36 E-value=1.4e-11 Score=94.69 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=87.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g 139 (167)
..|...+++++|+.+|++++++.|+. +.++.+++.++. ..+++++|+.+|++++.++|+++.++..++.++.. .+
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g 120 (172)
T PRK02603 43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RG 120 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC
Confidence 46778899999999999999988764 468999999887 89999999999999999999999999999999988 77
Q ss_pred C--------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296 140 D--------------ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 140 ~--------------~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+ +++|+++++++++++|++....
T Consensus 121 ~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~ 157 (172)
T PRK02603 121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEA 157 (172)
T ss_pred ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHH
Confidence 7 6889999999999999986443
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=8e-12 Score=91.17 Aligned_cols=87 Identities=16% Similarity=0.063 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
+.|+++++++|+++.+...++.++. ..+++++|+.++++++.++|.++.++..++.+++. ++++++|+.+|+++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999887 79999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHh
Q 046296 156 PDDWLNLIK 164 (167)
Q Consensus 156 P~~~~~l~~ 164 (167)
|.++.++.+
T Consensus 82 p~~~~~~~~ 90 (135)
T TIGR02552 82 PDDPRPYFH 90 (135)
T ss_pred CCChHHHHH
Confidence 999877643
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.36 E-value=3.4e-12 Score=82.75 Aligned_cols=64 Identities=23% Similarity=0.410 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
.+|..+. ..+++++|+++|+++++.+|+++.++..+|.+++. ++++++|+.+|+++++++|++|
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 4567776 78999999999999999999999999999999998 9999999999999999999886
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.2e-11 Score=93.33 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=77.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g~ 140 (167)
.+|...+++++|+.+|+++++.+|.++.++.+++.++. ..+++++|+++|++++... |..+.++..++.+++. .++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 150 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD 150 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence 46677788899999999999998888888888888776 6788888888888887753 4556677777877777 888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 046296 141 ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+++|+.+|+++++.+|+++.++
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHH
Confidence 8888888888888888776544
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.5e-12 Score=110.09 Aligned_cols=101 Identities=19% Similarity=0.084 Sum_probs=93.4
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+++|.-+.++++|+.+|++||++||+...+|..++.=+. .+.+..+|++.|++||+++|.|..+|+-+|.+|-. ++-+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence 467888899999999999999999999999999998665 68999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHh
Q 046296 142 SRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.=|+-||++|+++.|+|+++|..
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHH
Confidence 99999999999999999988754
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=1.4e-11 Score=112.88 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=78.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPGDGNILSLYADLIWQAH 138 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~----A~~~~~rAl~l~P~~~~al~~lA~~l~~~~ 138 (167)
.++...+++++|+..|+++++++|+++.++++++.++. ..+++++ |+.+|++|++++|+++.++.++|.++.. +
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-T 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-C
Confidence 34556678888888888888888888888888887776 6777764 7888888888888888888888888887 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 139 KDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+++++|+.+|+++++++|+++.++.+
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88888888888888888887765543
No 32
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.34 E-value=3.7e-12 Score=86.94 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
++++++|+.+|+++++.+|. ++.+++.+|.+++ ..+++++|+.++++ +.++|.++..++.+|.++++ ++++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 47899999999999999995 5777888999998 89999999999999 88999999999999999999 99999999
Q ss_pred HHHHHH
Q 046296 146 SYFDQA 151 (167)
Q Consensus 146 ~~~e~A 151 (167)
++|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=2.1e-12 Score=115.96 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=58.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
.+.++|+|..+|++||.++|.+..+|+.++.++. ++++++.|+-+|++|+++||.+..++..++.++.+ .++.++|++
T Consensus 467 ~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~ 544 (638)
T KOG1126|consen 467 ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQ 544 (638)
T ss_pred hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHH
Confidence 3445666666666666666666666666666654 56666666666666666666666666666666666 666666666
Q ss_pred HHHHHHHhCCCCHH
Q 046296 147 YFDQAVKSAPDDWL 160 (167)
Q Consensus 147 ~~e~Al~l~P~~~~ 160 (167)
+|++|+.++|.|+.
T Consensus 545 ~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPL 558 (638)
T ss_pred HHHHHHhcCCCCch
Confidence 66666666666653
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.32 E-value=4.6e-11 Score=91.28 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=83.8
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIW--- 135 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~--- 135 (167)
+..+..++++++|+..|++++++.|+. +.++.++|.++. ..+++++|+.+|++|+.++|.....+.+++.++.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 346778899999999999999998774 458999999886 8999999999999999999999999999999988
Q ss_pred ----HHcCCHH-------HHHHHHHHHHHhCCCCHH
Q 046296 136 ----QAHKDAS-------RAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 136 ----~~~g~~~-------eA~~~~e~Al~l~P~~~~ 160 (167)
. +++++ +|+.+|++++..+|.+..
T Consensus 121 ~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 121 EQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 6 67766 677777788889997653
No 35
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=2.2e-11 Score=99.49 Aligned_cols=100 Identities=17% Similarity=0.069 Sum_probs=94.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
..++++++..|+..++++.+++|+|+.+|+.++.+|. +.|+++.|...|.+|+++.|+++.++.|++..++. .|+++.
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~ 186 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLED 186 (257)
T ss_pred HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHH
Confidence 4567899999999999999999999999999999986 89999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHhc
Q 046296 144 AESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~y 165 (167)
|++++..+....|.++.+..|+
T Consensus 187 A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHH
Confidence 9999999999988899888776
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.30 E-value=3.4e-11 Score=108.77 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=83.7
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|...+++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..++.+++. .++++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence 35667788888888888888888888888888888776 6777 778888888888888888888888888888 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+|+++|+++++++|.++.+..++
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHH
Confidence 99999999999999888766543
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.9e-12 Score=112.92 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=88.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
-+|...++|++|+.+|+.||..+|+|...|+.|+-+|. ...+.++|+..|.||+++.|....+++++|+.++. +|.|.
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~yk 515 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYK 515 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHH
Confidence 46778889999999999999999999999999999997 78889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCC
Q 046296 143 RAESYFDQAVKSAPD 157 (167)
Q Consensus 143 eA~~~~e~Al~l~P~ 157 (167)
||+++|..||.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998775
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.28 E-value=5.1e-11 Score=109.25 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=88.6
Q ss_pred chhhcCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296 63 NYSNNNHGSSS----TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138 (167)
Q Consensus 63 ~~y~~~g~~d~----A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~ 138 (167)
.+|...+++++ |+.+|+++++++|+++.++.+++.++. ..+++++|+.+++++++++|+++.++.+++.++.. .
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-V 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-C
Confidence 45667788875 899999999999999999999999987 79999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Q 046296 139 KDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
|++++|+..|+++++.+|+++.+
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHH
Confidence 99999999999999999988653
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.28 E-value=6e-11 Score=110.35 Aligned_cols=99 Identities=15% Similarity=0.049 Sum_probs=92.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|...+++++|+.+|+++|+++|.++.++..++.++. ..+++++|+.+++++++.+|+++. +..++.++.. .++++
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~ 133 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHW 133 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHH
Confidence 46778899999999999999999999999999999886 799999999999999999999999 9999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|+..|++++++.|+++.++..
T Consensus 134 ~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 134 DELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999887654
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.1e-11 Score=106.55 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=96.1
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
++-+++.++|..|+.+|.+||+.+|+++..+.|.|.++. ..+.+..|++.++++|+++|+....|...|.+++. +.+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence 456789999999999999999999999999999999886 89999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 142 SRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
++|+..|+++++.+|++..++..|
T Consensus 443 dkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHH
Confidence 999999999999999998877544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3e-11 Score=108.61 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=95.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
-+|.++++++.|+-+|++|+++||.|...+..++.++. ..++.++|+.+|++|+.++|.++-..+..+.+++. .++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-LGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-hcchH
Confidence 57899999999999999999999999999999999987 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|+..+++.-++.|++..+++.
T Consensus 575 eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFAL 596 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHH
Confidence 9999999999999999877643
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.25 E-value=7.4e-11 Score=93.88 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=87.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN---ILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~---al~~lA~~l~~ 136 (167)
..|+..+++++|+..|+++++.+|+++ .+++.++.++. ..+++++|+..|+++++..|+++. +++.++.+++.
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 467788999999999999999999987 57799999887 899999999999999999998886 68889999987
Q ss_pred Hc--------CCHHHHHHHHHHHHHhCCCCHHH
Q 046296 137 AH--------KDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 137 ~~--------g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
. +++++|++.|+++++..|+++.+
T Consensus 120 -~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 120 -QIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred -hcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 5 78999999999999999998754
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.25 E-value=8.6e-11 Score=109.29 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=92.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.++...+++++|+..|+++++..|.++.++..+|.++. ..+++++|++.+++|++++|+++.+++.+|.++.. .++++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~ 444 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWR 444 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHH
Confidence 36677899999999999999999999999999999886 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l 162 (167)
+|++.++++++..|+++.+.
T Consensus 445 ~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999765
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.24 E-value=1.7e-11 Score=79.50 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG 124 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~ 124 (167)
..|+..+++++|+.+|+++++.+|+++.+++.++.++. .++++++|+.+|+++++++|++|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788999999999999999999999999999999997 89999999999999999999986
No 45
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-10 Score=97.22 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=87.2
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
.+|+..+++..|...|++|+++.|+|+..+..||.+|+...+ +-.++..++++|++++|.|..+++.||..+++ +++
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~ 242 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGD 242 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccc
Confidence 588999999999999999999999999999999999874333 46889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 046296 141 ASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~ 159 (167)
|.+|+..++..+++.|.+.
T Consensus 243 ~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 243 YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 9999999999999988653
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=1.7e-10 Score=111.46 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 104 GDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 104 gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
+++++|+++|++|++++|+++.+++.++.+++. ++++++|+..|+++++++|+++.
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHH
Confidence 444555555555555555555555555555554 55555555555555555555443
No 47
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=1.9e-10 Score=103.95 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=89.3
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..|...+++++|+..|+++++.+|+++.++..++.++. ..+++++|++.++++++.+|.++.++..++.+++. +++++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 210 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIE 210 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHH
Confidence 45677789999999999999999999999999999886 78999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~ 163 (167)
+|+.+|+++++++|+++.++.
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~ 231 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLL 231 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHH
Confidence 999999999999999876553
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=1.5e-10 Score=111.90 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=86.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALL--------------LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS 128 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~--------------l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~ 128 (167)
.+|.+++++++|+.+|+++++++|+++.. +...+.++. ..+++++|+.+|++|++++|+++.++.
T Consensus 311 ~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 311 QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 57888899999999999999999987532 123355554 689999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
.+|.++.. ++++++|+++|++|++++|+++.++.
T Consensus 390 ~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 390 GLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999 99999999999999999999987654
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.3e-10 Score=95.35 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 69 HGSSSTDAYNEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P---~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
...+.++..+.++|...| . .+.+|++++.++. ..+++++|+..|++|++++|+++.++.++|.++.. ++++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 567899999999997544 3 3677999999886 89999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHh
Q 046296 145 ESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~ 164 (167)
+..|++|++++|++..++.+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999887754
No 50
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.20 E-value=4.8e-10 Score=92.66 Aligned_cols=94 Identities=10% Similarity=0.098 Sum_probs=86.5
Q ss_pred hcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQAHK 139 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~~g 139 (167)
++++++++|+..|++.++..|++ +.+++.+|.+++ ..+++++|+..|++++...|+ .+++++.++.++.. ++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence 45689999999999999999998 589999999987 899999999999999998887 57888999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH
Q 046296 140 DASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
++++|+.+|+++++..|+...+
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999998754
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.19 E-value=4.2e-11 Score=78.26 Aligned_cols=58 Identities=26% Similarity=0.233 Sum_probs=54.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP 121 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P 121 (167)
..|+..+++++|+.+|+++|+++|+++.+++++|.++. .++ ++++|++.|++||+++|
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 56788899999999999999999999999999999987 788 79999999999999998
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.18 E-value=2.8e-10 Score=105.08 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=91.3
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+..+++++++|+..++++++.+|+++.+++.+|.+|. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|+.+
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~ 205 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALW 205 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHH
Confidence 35667789999999999999999999999999999997 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|...|++|++...+-...+.+
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHhhCcchHHHHH
Confidence 9999999999987655544433
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.3e-10 Score=97.48 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=89.1
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANP----GN-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI 126 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P----~n-----------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a 126 (167)
++.|++.++|..|...|++|+..=+ .+ ..+++|+|.++. .++++.+|+.+|.++|+++|+|.-+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence 4789999999999999999887633 11 235788998886 8999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
++..|.++.. +++|+.|+..|++|++++|+|..+..
T Consensus 294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999 99999999999999999999987654
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.15 E-value=1.4e-10 Score=75.47 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=35.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYA 131 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA 131 (167)
+++++++|+.+|+++++.+|+++.+++.++.++. ..+++++|+..+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555566666665556655555555555554 455555566555555555555555554444
No 55
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=1e-09 Score=92.72 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~e 143 (167)
|..++++++|+.+|+++++.+|++..++..++.++. ..+++++|+++|+++++.+|.+ ..++..++.++.. .+++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHH
Confidence 445677777777777777777777777777777665 6777777777777777777765 3455666666666 777777
Q ss_pred HHHHHHHHHHhCCCCH
Q 046296 144 AESYFDQAVKSAPDDW 159 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~ 159 (167)
|+++++++++..|+..
T Consensus 268 A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 268 GLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHhCCCch
Confidence 7777777777777654
No 56
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=6.8e-10 Score=94.11 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd--~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
++++++.++.++++.+|++..+|+..+.++. ..++ +++++.+++++|+++|+|..+|.+.+.++.. .+++++|+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 4566666666666666666666666665553 3444 2556666667777777777777777766666 6777777777
Q ss_pred HHHHHHhCCCCHHHH
Q 046296 148 FDQAVKSAPDDWLNL 162 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l 162 (167)
++++|+++|.|..++
T Consensus 165 ~~~~I~~d~~N~sAW 179 (320)
T PLN02789 165 CHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHHHCCCchhHH
Confidence 777777777776555
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=5.8e-10 Score=88.70 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=82.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH----
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNAL---LLGNYARFLKEVR--------GDFAKAEELCGRAILANPGDGNIL---- 127 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~---~l~~lA~~l~~~~--------gd~e~A~~~~~rAl~l~P~~~~al---- 127 (167)
.+|++.+++++|+..|+++++..|+++. +++.++.++. .. +++++|++.|+++++.+|++..++
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 5778889999999999999999999886 6888888876 33 679999999999999999987553
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 128 -------------SLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 128 -------------~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
..+|.+++. ++++.+|+..|+++++..|+++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCc
Confidence 356778888 9999999999999999988765
No 58
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.12 E-value=6.9e-10 Score=86.74 Aligned_cols=93 Identities=22% Similarity=0.187 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEV---------RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-- 139 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~---------~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-- 139 (167)
++.|.+.++.....||.+++++++.+.+|.+. ...+++|+.-|++||.++|+...+++.+|.++.. ++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence 67899999999999999999999999887632 1347889999999999999999999999999876 33
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 140 ---------DASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 140 ---------~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.|++|..+|++|+.++|+|..++-+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3788999999999999999877644
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.12 E-value=4.8e-10 Score=73.84 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=35.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSL 129 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~ 129 (167)
+|.+++++++|+.+++++++++|+++.++..+|.++. ..+++.+|++.|+++++++|+++.+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4455555555555555555555555555555555554 4555555555555555555555554433
No 60
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.12 E-value=5.1e-10 Score=85.87 Aligned_cols=83 Identities=14% Similarity=0.009 Sum_probs=76.5
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 80 KMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 80 kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
-...+. |+..+.++.+|..++ ..|++++|++.|+-+..++|.++..|++||.++.. ++++++|+..|.+|+.++|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence 445567 888899999999887 89999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHh
Q 046296 159 WLNLIK 164 (167)
Q Consensus 159 ~~~l~~ 164 (167)
|....+
T Consensus 103 p~~~~~ 108 (157)
T PRK15363 103 PQAPWA 108 (157)
T ss_pred chHHHH
Confidence 987654
No 61
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=1.2e-09 Score=92.60 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=88.0
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA- 141 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~- 141 (167)
++.+.+..++|+..+.++|+++|++..+|...+.++. ..+ ++++|+.+++++++.+|++..+|++.+.++.. .++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence 3455678999999999999999999999999999987 566 68999999999999999999999999999887 7764
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHH
Q 046296 142 -SRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 142 -~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
++++.+++++|+++|.|..++.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHH
Confidence 7889999999999999988774
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.11 E-value=1e-09 Score=92.73 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=86.5
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
.+|.+.+++++|+.+|+++++.+|.+ +.++..++.++. ..+++++|+.+++++++.+|+...+ ..++.++.. .+++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~-~g~~ 298 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEE-QEGP 298 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHH-hCCH
Confidence 46778899999999999999999987 456778888886 7999999999999999999988655 889999999 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l 162 (167)
++|+.+|+++++..|+++.++
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999987554
No 63
>PRK15331 chaperone protein SicA; Provisional
Probab=99.11 E-value=8.3e-10 Score=85.24 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=87.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
+.++++++|+..|+-....+|.|+.+|..||.++. .++++++|+..|..|..++++||...+..|.+++. +++.++|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHH
Confidence 46789999999999999999999999999999987 89999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhCCCCHHHH
Q 046296 146 SYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 146 ~~~e~Al~l~P~~~~~l 162 (167)
..|+.++. .|.+..+.
T Consensus 126 ~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 126 QCFELVNE-RTEDESLR 141 (165)
T ss_pred HHHHHHHh-CcchHHHH
Confidence 99999999 57776543
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3e-10 Score=99.93 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=79.2
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
|+++-.+++++|+.-|+++++++|+|..++..++..++ ++.++++++..|+.+++.-|+.++++..+|.+|.. +++|+
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHhHH
Confidence 45555667888888888888888888888888888777 67888888888888888888888888888888888 88999
Q ss_pred HHHHHHHHHHHhCCC
Q 046296 143 RAESYFDQAVKSAPD 157 (167)
Q Consensus 143 eA~~~~e~Al~l~P~ 157 (167)
+|+++|++||.+.|.
T Consensus 480 ~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999999887
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.6e-10 Score=96.25 Aligned_cols=97 Identities=9% Similarity=0.036 Sum_probs=89.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
-|....+...|+..|++|++++|.+..+|+.+++++. .+....=|+-+|++|+++-|+|+..|..+|.+|.+ .++.++
T Consensus 373 EyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~e 450 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEE 450 (559)
T ss_pred HHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHH
Confidence 4677788999999999999999999999999999986 89999999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHhCCCCHHHH
Q 046296 144 AESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l 162 (167)
|+++|.+|+....-+..++
T Consensus 451 AiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 451 AIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred HHHHHHHHHhccccchHHH
Confidence 9999999999877655444
No 66
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.06 E-value=1.2e-09 Score=71.99 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=60.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 97 RFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 97 ~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
.++. ..+++++|++++++++.++|+++..+..+|.+++. ++++++|++.|+++++..|+++.+..
T Consensus 3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3454 79999999999999999999999999999999999 99999999999999999999987653
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.06 E-value=5.6e-10 Score=91.46 Aligned_cols=98 Identities=22% Similarity=0.168 Sum_probs=73.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~--P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
.+|...++++++...++++.+.. |.++.+|..+|.++. ..|+.++|+++|++||+++|+++.++..++.++.. .++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~ 195 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGD 195 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCC
Confidence 35566788888888888877655 678888888888775 78888888888888888888888888888888888 888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 046296 141 ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l 162 (167)
++++.+++++..+..|+++.++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHC
T ss_pred hHHHHHHHHHHHHHCcCHHHHH
Confidence 8888888888777777666443
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=5.5e-10 Score=72.59 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=56.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
..+++++|+++|++++..+|+++.++..++.+++. .|++++|++++++++..+|+++.++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 58999999999999999999999999999999999 99999999999999999999886653
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=1.6e-09 Score=88.65 Aligned_cols=100 Identities=21% Similarity=0.131 Sum_probs=90.8
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
.|...++-+.+..+..+++..+|.++.++..++..+. ..+++..|+..+++|.+++|+|..+|+.+|.+|.+ .|++++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhH
Confidence 4555667778888888888889999999988888776 79999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHhc
Q 046296 144 AESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~y 165 (167)
|...|.+|+++.|++|.++.|+
T Consensus 153 Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 153 ARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred HHHHHHHHHHhccCCchhhhhH
Confidence 9999999999999999988775
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.04 E-value=2.9e-09 Score=98.63 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=92.9
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
++..+.+|++++|+..+.++|+++|.++.+|..||.++. .+|+.+++...+-.|--++|++...|..++....+ ++++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccH
Confidence 456677799999999999999999999999999999985 89999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
.+|+-+|.+||+.+|.+.....
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ 245 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIY 245 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHH
Confidence 9999999999999999876543
No 71
>PRK11906 transcriptional regulator; Provisional
Probab=99.04 E-value=2.2e-09 Score=94.21 Aligned_cols=89 Identities=9% Similarity=0.090 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
.+..+|.++-++|++++|.|+.++..+|.++. ..++++.|+..|++|+.++|+.+.+++.+|++++. .|+.++|++.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 57889999999999999999999999999886 67889999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCH
Q 046296 149 DQAVKSAPDDW 159 (167)
Q Consensus 149 e~Al~l~P~~~ 159 (167)
++|++++|...
T Consensus 396 ~~alrLsP~~~ 406 (458)
T PRK11906 396 DKSLQLEPRRR 406 (458)
T ss_pred HHHhccCchhh
Confidence 99999999754
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=3.8e-09 Score=92.69 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=93.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..++..+++++|+..++..++..|+|+.++...+.++. ..++.++|++.+++++.++|+.+....+||.+|++ .|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChH
Confidence 34566789999999999999999999999999999886 79999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+|+.++++.+..+|++|..|..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHH
Confidence 9999999999999999977654
No 73
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.02 E-value=2.1e-09 Score=94.25 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI---LSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a---l~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
.+|+++.+++|++.+|+ ..+++++|+.+|++||+++|+++.+ |+++|.+|.. +|++++|+.+|++||++.
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 68999999999999997 8999999999999999999999965 9999999999 999999999999999983
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=3.3e-09 Score=88.72 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=81.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcC
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN----ILSLYADLIWQAHK 139 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~----al~~lA~~l~~~~g 139 (167)
++..++++++|+..++++++++|+++.++..++.+++ ..+++++|+.++++++...|.++. .+..++.++.. +|
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G 200 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RG 200 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CC
Confidence 5677899999999999999999999999999999997 799999999999999999885443 35578999998 99
Q ss_pred CHHHHHHHHHHHHHhCC
Q 046296 140 DASRAESYFDQAVKSAP 156 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P 156 (167)
++++|+.+|++++...|
T Consensus 201 ~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 201 DYEAALAIYDTHIAPSA 217 (355)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999987777
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2e-09 Score=94.83 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=61.8
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+|..+++.++-...|.+|..+||+||.+++..+.+.+ ..+++++|++-|++|+.++|.++.++..++.++++ ++++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~ 446 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAE 446 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHH
Confidence 4455556666666666666666666666666666655 56666666666666666666666666666666666 666666
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 046296 144 AESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~ 161 (167)
++..|+.+++.-|+-+.+
T Consensus 447 ~m~~Fee~kkkFP~~~Ev 464 (606)
T KOG0547|consen 447 SMKTFEEAKKKFPNCPEV 464 (606)
T ss_pred HHHHHHHHHHhCCCCchH
Confidence 666666666666665543
No 76
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.99 E-value=4.4e-09 Score=98.79 Aligned_cols=100 Identities=15% Similarity=0.003 Sum_probs=79.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+|..++++++|+..|+++++++|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. ++++.+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHH
Confidence 5666788888888888888888888888888777665 6788888888888888888886665 445555555 677777
Q ss_pred HHHHHHHHHHhCCCCHHHHHhcc
Q 046296 144 AESYFDQAVKSAPDDWLNLIKLY 166 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~yy 166 (167)
|++.|+++++++|+++.++..||
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 88889999999898888776664
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.98 E-value=4.7e-09 Score=98.63 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=76.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+..++++++.|+..|+++++.+|+++.+...++.++. ..++.++|+.++++++.-+|.....+..+|.++.. +++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHH
Confidence 34567789999999999999999999644447766665 67888888888888884344444444445668877 88888
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~ 163 (167)
+|+++|+++++++|+++.++.
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHH
Confidence 888888888888888887664
No 78
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.5e-09 Score=85.93 Aligned_cols=96 Identities=20% Similarity=0.154 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH--KDASRAES 146 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~--g~~~eA~~ 146 (167)
.+.++.+.-++.-|+.||+|++-|..|+.++. ..+++..|...|++|+++.|++++++..||.+++... ..-.+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45888899999999999999999999999986 8999999999999999999999999999999887722 24568999
Q ss_pred HHHHHHHhCCCCHHHHHhc
Q 046296 147 YFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 147 ~~e~Al~l~P~~~~~l~~y 165 (167)
.|++|++++|+|..++..|
T Consensus 215 ll~~al~~D~~~iral~lL 233 (287)
T COG4235 215 LLRQALALDPANIRALSLL 233 (287)
T ss_pred HHHHHHhcCCccHHHHHHH
Confidence 9999999999999877544
No 79
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7e-09 Score=92.45 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 92 LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
+.|++.++. ..+.+++|+.+|++||.+.|.++.++..+|.++.. +|+++.|+.+|.+||.++|+|..
T Consensus 458 ~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 458 LNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccHH
Confidence 455565554 66788888888888888888888888888888887 88888888888888888888854
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=9.7e-09 Score=85.90 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=78.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHHHHcCCH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLG-------------------------------------NYARFLKEVRGDF 106 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~-------------------------------------~lA~~l~~~~gd~ 106 (167)
.+...+++++|..+++++++.+|+++.++. .++.++. ..+++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCH
Confidence 455667888899989988888888876543 2222333 57899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 107 AKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 107 e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
++|+..++++++++|+++.++..++.++++ .+++++|+.++++++...|.++
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCc
Confidence 999999999999999999999999999999 9999999999999999988544
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.9e-09 Score=92.82 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=93.6
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+++.++.++++.|+.+|..||.++|.|-..+.|-...+. ..++|++|++--.+.++++|+=+..|..+|..++- .|+|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccH
Confidence 356678899999999999999999999888888777775 79999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 142 SRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
++|+..|.+.|+.+|+|..+...+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhH
Confidence 999999999999999998776543
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=5.4e-09 Score=95.71 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=87.7
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~--~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
..+..++++.+|...|..|+.+||+++.....+|.++. ..|+..-|+. .+..|++++|.++++|+.+|.++.. +|+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence 45667789999999999999999999999999999986 7887666666 9999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 046296 141 ASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~ 159 (167)
.++|..+|+.|+++++.+|
T Consensus 770 ~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNP 788 (799)
T ss_pred hHHHHHHHHHHHhhccCCC
Confidence 9999999999999999887
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.2e-09 Score=94.59 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
..+..-.++|..|...+| .+|++...|+.+++ ..++|++|+.+|+.||..+|+|...|..||-.|.. -.+.++|+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs 485 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence 457778889999999999 79999999998877 79999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHhCCCCHHHHHhc
Q 046296 147 YFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 147 ~~e~Al~l~P~~~~~l~~y 165 (167)
.|++||++.|...++++|+
T Consensus 486 AY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 486 AYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred HHHHHHhcCCCeeeeehhh
Confidence 9999999999998888775
No 84
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.91 E-value=3.5e-09 Score=90.39 Aligned_cols=99 Identities=17% Similarity=0.028 Sum_probs=93.0
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
++-|++++.|++|+.||.++|.++|.||..+.|.|..+. ....+..|+.-|..||.++.....+|...+.+-+. +|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhH
Confidence 478999999999999999999999999999999999886 79999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l 162 (167)
.||.+-++.+|++.|++..+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHH
Confidence 999999999999999976544
No 85
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=1.2e-08 Score=76.35 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=46.6
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
++..+++++|+..|+++++..|++ +.+.+.+|.++. ..+++++|+..++. +.-.|-.+.++..+|.+++. +|++
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~ 134 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDY 134 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCH
Confidence 444556666666666666655443 334555555554 55666666666544 33334445555556666665 6666
Q ss_pred HHHHHHHHHHH
Q 046296 142 SRAESYFDQAV 152 (167)
Q Consensus 142 ~eA~~~~e~Al 152 (167)
++|++.|++||
T Consensus 135 ~~A~~~y~~Al 145 (145)
T PF09976_consen 135 DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhC
Confidence 66666666553
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=2.3e-08 Score=76.31 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=81.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKD 140 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n--~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~ 140 (167)
+-...+..+...+.+.++.++.+ ..++++++.++. ..+++++|+.+|++|+.+.|+. +.++.++|.++.. +++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~ 87 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGE 87 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCC
Confidence 33445777888887777787776 667788998876 7899999999999999998763 4689999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 141 ASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+++|+.+|++|++++|.+...+.+
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHH
Confidence 999999999999999998876543
No 87
>PRK11906 transcriptional regulator; Provisional
Probab=98.88 E-value=2.2e-08 Score=87.99 Aligned_cols=95 Identities=15% Similarity=-0.004 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137 (167)
Q Consensus 69 g~~d~A~~~~~kAL---~l~P~n~~~l~~lA~~l~~~--------~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~ 137 (167)
...++|+.+|.+|+ +++|..+.++..+|.++... ..+..+|.++.++|++++|.|+.++..+|.+++.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~- 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL- 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence 35778999999999 99999999999999876522 2356889999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 138 HKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.++++.|+..|++|+.++|+.+.++..
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~ 377 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYY 377 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHH
Confidence 899999999999999999999877643
No 88
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=6.8e-08 Score=71.11 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=79.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQA 137 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~ 137 (167)
+|...|+.++|+.+|+++++..+.. ..++..++..+. ..|++++|+..+++++...|+ +..+...++.++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~- 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN- 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-
Confidence 4667799999999999999986665 467888999997 899999999999999999898 88899999999999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 046296 138 HKDASRAESYFDQAVKS 154 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l 154 (167)
.|++++|++.+..++.-
T Consensus 88 ~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE 104 (120)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.6e-08 Score=81.79 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=57.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK---DASRAE 145 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g---~~~eA~ 145 (167)
++.-+|++.+.+-++..|+++++|..++.++. ..++|++|.-++++.+-++|.++..+..||.+++- ++ +.+-|.
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 33444555555555555555566666666554 56666666666666666666666666666666665 44 344566
Q ss_pred HHHHHHHHhCCCCHHHHHhc
Q 046296 146 SYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 146 ~~~e~Al~l~P~~~~~l~~y 165 (167)
+||.+|++++|.+...+.-+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 66666666666655555433
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=2.9e-08 Score=64.25 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
++++++.++. ..+++++|+..++++++..|+++.++..++.++.. .+++++|+++|++++++.|.++.++
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHH
Confidence 4677888886 79999999999999999999999999999999999 9999999999999999999987544
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=4.7e-08 Score=80.26 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=90.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
.+...+++++|+++|+..|+-||.|..++-..-.++. .+|+.-+|++.+..-++.-|+|+++|..++.+|+. .++|++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~k 172 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEK 172 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHH
Confidence 4566789999999999999999999998887665665 78988899999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHhc
Q 046296 144 AESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~y 165 (167)
|.-+|++.+-+.|.+|..+..|
T Consensus 173 A~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHH
Confidence 9999999999999999877543
No 92
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=4.8e-08 Score=87.74 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l--~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
+.+++....++++.+ +|.++.++..++..+. ..+++++|+.++++|++++| +..++..+|.++.. .|++++|+..
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~ 475 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 467788888887775 8888988888887765 78999999999999999999 58899999999999 9999999999
Q ss_pred HHHHHHhCCCCHH
Q 046296 148 FDQAVKSAPDDWL 160 (167)
Q Consensus 148 ~e~Al~l~P~~~~ 160 (167)
|++|++++|.+|.
T Consensus 476 ~~~A~~L~P~~pt 488 (517)
T PRK10153 476 YSTAFNLRPGENT 488 (517)
T ss_pred HHHHHhcCCCCch
Confidence 9999999999874
No 93
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=8.1e-08 Score=73.70 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
..+.++++++..+. ..+++++|+.+|++++++.|+. +.++.++|.++.. .+++++|+.+|++++++.|+++..+.
T Consensus 33 ~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45677889998886 7999999999999999988764 4689999999999 99999999999999999999887653
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.9e-08 Score=87.37 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=92.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
++-+.++++++|...|++||.-+..-.++++|++..+. ..+++++|+.+|-+.-.+--+++++++.+|.+|-. +.+..
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~a 575 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPA 575 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHH
Confidence 45567899999999999999999999999999998885 89999999999999988888999999999999988 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+|+++|.++..+-|++|.++..+
T Consensus 576 qaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHH
Confidence 99999999999999999988654
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=92.16 Aligned_cols=100 Identities=17% Similarity=0.090 Sum_probs=93.6
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
.++.++.++..+|+..++++|-.+..|++++.+.. +..++..|..+|.+.+.++|++.++|.|++.++.. .++-.+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHH
Confidence 34689999999999999999999999999998775 79999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHhccC
Q 046296 146 SYFDQAVKSAPDDWLNLIKLYL 167 (167)
Q Consensus 146 ~~~e~Al~l~P~~~~~l~~yy~ 167 (167)
..+++|++.+-.++.++.||.+
T Consensus 574 ~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhh
Confidence 9999999999888888888853
No 96
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.7e-08 Score=81.08 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=83.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
+-|+....++.|+.+|.+||.++|..+.++.|-|.++. +..+++.+..-+++|++++|+....++.++.++.+ ...|+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence 34455568999999999999999999999999999886 79999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHh
Q 046296 143 RAESYFDQAVKS 154 (167)
Q Consensus 143 eA~~~~e~Al~l 154 (167)
+|+..+++|..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999665
No 97
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=84.17 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=76.0
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
..+|.+.+.++.|++.++.||++||....+|..|+.++. .++++++|++.|+|||+++|++..++.+|-++-.. +.+.
T Consensus 122 AAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~ 199 (304)
T KOG0553|consen 122 AAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEP 199 (304)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCC
Confidence 357889999999999999999999999999999999887 89999999999999999999999999999887766 5554
Q ss_pred H---HHHHHHHHH
Q 046296 142 S---RAESYFDQA 151 (167)
Q Consensus 142 ~---eA~~~~e~A 151 (167)
. .+...++-+
T Consensus 200 ~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 200 KSSAQASGSFDMA 212 (304)
T ss_pred Ccccccccchhhh
Confidence 4 444444444
No 98
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.75 E-value=1.2e-07 Score=82.29 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=70.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILANPGDG--NILSLYADLIWQA 137 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~--~al~~lA~~l~~~ 137 (167)
..+...+++++|+..++++++..|++... .......+ ..++.+++++.++++++.+|+++ .++..+|.+++.
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~- 347 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK- 347 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-
Confidence 35667788888888888888888888752 22111112 35677888888888888888888 778888888888
Q ss_pred cCCHHHHHHHHH--HHHHhCCCCHH
Q 046296 138 HKDASRAESYFD--QAVKSAPDDWL 160 (167)
Q Consensus 138 ~g~~~eA~~~~e--~Al~l~P~~~~ 160 (167)
++++++|+++|+ ++++..|++..
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHH
Confidence 888888888888 57777776654
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=1.5e-08 Score=67.62 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-------P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
|+-+.++.++|.++. ..+++++|+.+|++|+++. |.-+.++.++|.++.. ++++++|+++|++|+++
T Consensus 2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 444678899999997 8999999999999999762 2236778899999999 99999999999999986
No 100
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=75.78 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~ 137 (167)
+-++.++++++|..-|.+||++-|.-+ ..+.|.|.++. ..+..+.|+.-|.+||+++|.+..++...|.+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek- 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK- 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence 456788999999999999999999864 34556666664 78899999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 138 HKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+..|++|++-|++.++++|..-.+.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHH
Confidence 8999999999999999999876543
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.73 E-value=7.8e-08 Score=82.44 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=68.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
.+|...+++++|+..++++|+++|+++.++++++.++. ..+++++|+.+|+++++++|+++.+...++.+...
T Consensus 44 ~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 44 QANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999987 89999999999999999999999999888887655
No 102
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.73 E-value=2.7e-07 Score=69.83 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=84.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQA 137 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~ 137 (167)
..++.+++++|+..|+.+....|-. ..+.+.++.+++ ..+++++|+..+++.|+++|+++ .+++..|++.+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~- 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE- 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-
Confidence 3456789999999999999999986 467788888887 79999999999999999999875 677888888888
Q ss_pred cCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296 138 HKD---------------ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 138 ~g~---------------~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+.. ..+|...|++.|+.-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 665 7799999999999999998764
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=9.3e-08 Score=67.20 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
+..++.++..+. ..+++++|++.|++++..+|++ +.+++.++.+++. .+++++|+.+|++++...|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCC
Confidence 456788888886 7999999999999999999987 5788999999999 9999999999999999999864
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.71 E-value=1.9e-07 Score=80.90 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
+...++.++|...++++++. |.++.....++.+ ..++++++++.+++.++.+|+++..+..+|.++.. .+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 33445555555555555552 2233333333322 12455555555555555555555555555555555 5555555
Q ss_pred HHHHHHHHHhCCCCH
Q 046296 145 ESYFDQAVKSAPDDW 159 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~ 159 (167)
+++|++++++.|++.
T Consensus 348 ~~~le~al~~~P~~~ 362 (398)
T PRK10747 348 SLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHHHhcCCCHH
Confidence 555555555555544
No 105
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=1.5e-07 Score=81.98 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=67.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
..+.++.|+..|++..+.+|+ +...+|.++. ..++..+|++.++++|+.+|.+...+...+.++.. +++++.|++
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 346777888888887777765 3334566654 56677777888888887788777777777777777 777888888
Q ss_pred HHHHHHHhCCCCHHHHHh
Q 046296 147 YFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 147 ~~e~Al~l~P~~~~~l~~ 164 (167)
+.++|+++.|++...|..
T Consensus 256 iAk~av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQ 273 (395)
T ss_pred HHHHHHHhCchhHHHHHH
Confidence 888888888877665543
No 106
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.70 E-value=3.1e-07 Score=74.97 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=80.0
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l---~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~ 136 (167)
..++.++++++|+..|+++++..|..+.+. +.+|.+++ ..+++++|+..+++.|+.+|+++ .+++.+|.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 344567899999999999999999997665 78888887 79999999999999999998764 667777776533
Q ss_pred HcC---------------C---HHHHHHHHHHHHHhCCCCHHHH
Q 046296 137 AHK---------------D---ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 137 ~~g---------------~---~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.+ | ..+|+..|++.|+.-|+..++-
T Consensus 119 -~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~ 161 (243)
T PRK10866 119 -LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT 161 (243)
T ss_pred -cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence 22 1 2478899999999999987543
No 107
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=3.6e-07 Score=75.39 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAH 138 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~ 138 (167)
+++.+++..|+..|+.-|+..|++ +.+++.|+.+++ .+++++.|...|.++++-.|++ |++++.+|.++.. +
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-L 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-h
Confidence 345688999999999999999996 688999999998 8999999999999999998754 6889999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 139 KDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
++.++|...|+++++.-|..+.+.
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999987543
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.70 E-value=1.6e-07 Score=87.33 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=87.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+|..+|+.++|...+..|-.++|+++..|..++.... .++.+++|.-+|.|||..+|.+....+..+.++.+ +|+..
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~~ 258 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDLK 258 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChHH
Confidence 46788999999999999999999999999999998765 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCC
Q 046296 143 RAESYFDQAVKSAP 156 (167)
Q Consensus 143 eA~~~~e~Al~l~P 156 (167)
+|...|++++++.|
T Consensus 259 ~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 259 RAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999999
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=5.4e-08 Score=83.21 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=89.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
.++.++++..|+..|-.|++.+|+|..+++..|.++. .+|+...|+.-+.+.|++.|+...+....+.++++ +|++++
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHH
Confidence 4567789999999999999999999999999999886 89999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 046296 144 AESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~ 161 (167)
|+.-|+++|+-+|++...
T Consensus 125 A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLV 142 (504)
T ss_pred HHHHHHHHHhcCCCcchh
Confidence 999999999999977543
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.69 E-value=4e-07 Score=79.00 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=50.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-NILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~~~~g~~~eA~ 145 (167)
..++++.|.+.+.++.+..|+...++...|.+.. .++++++|..+++++.+..|++. .+...++.++.. .+++++|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHH
Confidence 3455555555555555555555555554455443 45555555555555555555543 334444555555 55555555
Q ss_pred HHHHHHHHhCCCCHHHH
Q 046296 146 SYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 146 ~~~e~Al~l~P~~~~~l 162 (167)
+.++++++..|+++.++
T Consensus 174 ~~l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVL 190 (409)
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 55555555555555443
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.7e-07 Score=81.22 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=77.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+++..++..+|++.+++++.++|+.+..+.+||.+|. ..+++.+|+.++.+.+..+|+++..|..||..+-. +|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchH
Confidence 46778899999999999999999999999999999997 89999999999999999999999999999998877 66555
Q ss_pred HHHHHHHHHHHh
Q 046296 143 RAESYFDQAVKS 154 (167)
Q Consensus 143 eA~~~~e~Al~l 154 (167)
+|...+-+.+.+
T Consensus 426 ~a~~A~AE~~~~ 437 (484)
T COG4783 426 EALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHHHh
Confidence 555554444443
No 112
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=2.2e-07 Score=83.52 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV-------RGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~-------~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g 139 (167)
.++.+|+.+|++|++++|+++.++..++.++... ..+.+++.+..++++.+ +|.++.++..+|..+.. .+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence 4588999999999999999999999887765421 12356777788887774 88889999999999888 99
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 046296 140 DASRAESYFDQAVKSAPD 157 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~ 157 (167)
++++|+.+|++|+.++|+
T Consensus 435 ~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS 452 (517)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 999999999999999995
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=1.9e-07 Score=88.10 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=79.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG------------------- 124 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~------------------- 124 (167)
+|...+++++|++.++.+++.+|+.+.+++.+|.++. +.+++.+|... +++.+-|.+.
T Consensus 40 ~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k 116 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENK 116 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhh
Confidence 4557789999999999999999999999999998655 66666555544 5555555544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
.+++.+|.+|-. +++.++|...|+++|+++|+|+.++.+|
T Consensus 117 ~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 117 LALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888889998888 8999999999999999999999888776
No 114
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.63 E-value=7.3e-07 Score=77.20 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=73.3
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLG-NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~-~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
.+++++++|..+|+++.+.+|++..+.. ..+.++. ..+++++|++.++++++.+|+++.++..++.++.. .+++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence 5668888888888888888888764443 2355554 68888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHHHhCCCCHH
Q 046296 145 ESYFDQAVKSAPDDWL 160 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~ 160 (167)
++++.+..+..+.++.
T Consensus 207 ~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 207 LDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHHcCCCCHH
Confidence 8888888887766544
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.63 E-value=1.5e-07 Score=84.15 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=81.1
Q ss_pred chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNI 126 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~a 126 (167)
..|..++++++|+..|++||++ .|.-...+.++|.++. ..+++.+|+.+|++|+.+ +|.-+.+
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4688899999999999999999 6766677777998886 899999999999999987 5666788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 127 LSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
+.+||.+|.. .|+|++|..++++|+++-
T Consensus 286 l~nLa~ly~~-~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 286 LNNLAVLYYK-QGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHhc-cCChHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999873
No 116
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.4e-07 Score=81.91 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=84.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~ 138 (167)
+-.+++|++.+|.++|.++|.++|+| +..+.|.|.+.. ..++..+|+.-+..|+.++|....++...|.++.. .
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-L 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-H
Confidence 34568899999999999999999986 456778888876 79999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 046296 139 KDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l~P~ 157 (167)
+++++|++.|++|+++..+
T Consensus 335 e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999999999998765
No 117
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=76.31 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=91.2
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+.+|.+.|-++-|..-|.++|.++|+-|.+.+.++..+. ..++++.|.+.|...++++|..-.+..+.|+.++- -|++
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~ 149 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRY 149 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCch
Confidence 357778888999999999999999999999999998886 79999999999999999999999999999998888 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~ 161 (167)
.-|.+-|.+-.+.+|++|+-
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred HhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999964
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=9.5e-07 Score=76.99 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=79.8
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+|...++..+|++.+.++|+.+|.++..+...|.+|. ..++++.|+++.++|+.+.|++...|+.|+.+|.. ++++++
T Consensus 209 v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ 286 (395)
T PF09295_consen 209 VYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFEN 286 (395)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHH
Confidence 4566778889999999999999999999999999996 89999999999999999999999999999999999 999999
Q ss_pred HHHHHHHH
Q 046296 144 AESYFDQA 151 (167)
Q Consensus 144 A~~~~e~A 151 (167)
|+..+..+
T Consensus 287 ALlaLNs~ 294 (395)
T PF09295_consen 287 ALLALNSC 294 (395)
T ss_pred HHHHHhcC
Confidence 99877644
No 119
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.59 E-value=4.9e-07 Score=71.51 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=76.9
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~ 136 (167)
..++.++++.+|+..|++++...|.. +.+++.++.+++ ..+++++|+..+++.++..|+++ .+++.+|.+++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34677899999999999999999986 577888998887 89999999999999999999875 678888888765
Q ss_pred H----------cCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 137 A----------HKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 137 ~----------~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
. +....+|+..|+..|+.-|+++++
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 1 122358999999999999998754
No 120
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.58 E-value=2.7e-07 Score=86.49 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=86.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-- 139 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-- 139 (167)
..|.++|++++|..+|.++++.+|++ ...++.+++++. ..++++.|+.+|++.++.+|++.+++..+|.+|.. ..
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence 46778899999999999999999998 777888888875 79999999999999999999999999999988877 43
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 140 --DASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 140 --~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
..++|..++.++++..|.+..++..
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 5678999999999999988877644
No 121
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=5.2e-07 Score=76.47 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=80.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~ 137 (167)
.+|.+..++++|+..-++..++.|... .++..||..+. ...+.++|+..++||++.||++..+-..+|.+...
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~- 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA- 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence 367777889999999999999988763 45556666554 67889999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 046296 138 HKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
+|+|++|++.++++++.+|+..
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHH
Confidence 9999999999999999998763
No 122
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.4e-07 Score=78.11 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
-.++|..+++++|+++|....+-+.+|.++. ..+.++.++.++++++..-|++ ..+..+|.++.. .+.+++|+.+|.
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 4689999999999999999999999999886 8999999999999999888776 567889999999 999999999999
Q ss_pred HHHHhCCCCHHHH
Q 046296 150 QAVKSAPDDWLNL 162 (167)
Q Consensus 150 ~Al~l~P~~~~~l 162 (167)
.||+++|++...+
T Consensus 496 ~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 496 KALRQDPKSKRTL 508 (564)
T ss_pred HHHhcCccchHHH
Confidence 9999999998765
No 123
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=1.1e-07 Score=54.80 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 113 CGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 113 ~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
|+|||+++|+++.+|++||.+|.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 455555555555555555555555 55555553
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=3.3e-07 Score=76.76 Aligned_cols=101 Identities=15% Similarity=0.043 Sum_probs=54.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
++|.+.++++.|.+.++++-+.+.+...+...-+++.. ..| .+.+|...|+......|.++.++..+|.+++. +++
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~ 216 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH 216 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence 34555666666666666666665555444444443332 222 35666666666555545566666666666666 666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 141 ASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+++|++.+++|+..+|+++.+++|+
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6666666666666666666655553
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-06 Score=76.21 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=81.0
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
.|.+.+++.+|+.+..++|+++|+|..+++..+.++. ..++|+.|+..|++|++++|+|-.+...+..+..+.+...++
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999999996 899999999999999999999999999998887773344456
Q ss_pred HHHHHHHHHHhCC
Q 046296 144 AESYFDQAVKSAP 156 (167)
Q Consensus 144 A~~~~e~Al~l~P 156 (167)
..+.|.+.+..-+
T Consensus 345 ekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 345 EKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccc
Confidence 6889999888655
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=4.6e-07 Score=82.05 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
++|.+.+...+.+|+..|.+++.+...+..|. ..++.++|..+++.+++.+|.+...|+-+|.++.. ..+|++|+++|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHH
Confidence 46777788888888888888888888888876 78888888888888888888888888888888887 88888888888
Q ss_pred HHHHHhCCCCHHHHH
Q 046296 149 DQAVKSAPDDWLNLI 163 (167)
Q Consensus 149 e~Al~l~P~~~~~l~ 163 (167)
+.|++++|+|..++.
T Consensus 99 ~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 99 RNALKIEKDNLQILR 113 (700)
T ss_pred HHHHhcCCCcHHHHH
Confidence 888888888877664
No 127
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.2e-07 Score=79.15 Aligned_cols=98 Identities=20% Similarity=0.109 Sum_probs=79.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
-+|..-+++.+|.++|-|+..+||....+|..+|..+. ..+.-++|+.+|.+|-++-|........+|.=+.. .++++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHH
Confidence 35677799999999999999999999999999998876 67777777777777777777776666677776666 77777
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 046296 143 RAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l 162 (167)
.|.++|.+|+.+.|++|.++
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred HHHHHHHHHHhcCCCcchhh
Confidence 77777777777777777655
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.49 E-value=7.1e-07 Score=78.50 Aligned_cols=58 Identities=19% Similarity=-0.007 Sum_probs=53.6
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN 120 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~l~ 120 (167)
+.+|++.+++++|+.+|++||+++|+++.+ |+|+|.+|. .++++++|++++++||++.
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels 142 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999965 999999987 8999999999999999984
No 129
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.49 E-value=4.7e-07 Score=81.07 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=76.7
Q ss_pred chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PGDGNI 126 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--------P~~~~a 126 (167)
.+|..++++.+|+.+|++||.+ +|.-+.++.+||.++. ..+++++|..+|++|++|- |.-+..
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 5788899999999999999987 4445678899998887 8999999999999999873 334556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 127 LSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+.+++.++.. ++++++|+.++++++++
T Consensus 328 l~~~~~~~~~-~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 328 LSELAAILQS-MNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHH-hcchhHHHHHHHHHHHH
Confidence 6677888887 99999999999999987
No 130
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.47 E-value=1.7e-07 Score=53.97 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE 111 (167)
Q Consensus 77 ~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~ 111 (167)
+|++||+++|+|+.+|++||.++. ..|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence 489999999999999999999997 8999999863
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.47 E-value=6.5e-07 Score=83.99 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
++.|.+.|..+++..|+|..++...|.+++ .+++|-.|+.+|++|+.++|.. +....-.+.++++ +++.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHH
Confidence 688999999999999999999999998887 7899999999999999998854 4555667778888 888899999999
Q ss_pred HHHHhCCCCHHHHHhc
Q 046296 150 QAVKSAPDDWLNLIKL 165 (167)
Q Consensus 150 ~Al~l~P~~~~~l~~y 165 (167)
+|++++|.+..++..+
T Consensus 224 ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVAL 239 (1018)
T ss_pred HHHhcChhhHHHHHHH
Confidence 9999999777665443
No 132
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=3.8e-07 Score=77.70 Aligned_cols=88 Identities=8% Similarity=-0.016 Sum_probs=40.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
|...+++++|.++|+++++++|.|.+++...|.-++ ..++.+-|+.+|+|.+..--.+++.+.+++.+++- .++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhh
Confidence 333444444444444444444444444443333333 34444444444444444444444444444444444 4444444
Q ss_pred HHHHHHHHHh
Q 046296 145 ESYFDQAVKS 154 (167)
Q Consensus 145 ~~~~e~Al~l 154 (167)
+..|++|+..
T Consensus 378 L~sf~RAlst 387 (478)
T KOG1129|consen 378 LPSFQRALST 387 (478)
T ss_pred HHHHHHHHhh
Confidence 4444444443
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=4.8e-06 Score=62.15 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 046296 67 NNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKD 140 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~ 140 (167)
..++..++...+++.++..|+. ..+.+.+|.++. ..+++++|+..|++++...|+. +.+...+|.+++. +++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 3578899999999999999999 566777888887 7999999999999999988765 4577789999999 999
Q ss_pred HHHHHHHHHH
Q 046296 141 ASRAESYFDQ 150 (167)
Q Consensus 141 ~~eA~~~~e~ 150 (167)
+++|+..++.
T Consensus 101 ~d~Al~~L~~ 110 (145)
T PF09976_consen 101 YDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHh
Confidence 9999999966
No 134
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=6.6e-07 Score=74.93 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA-SRAESY 147 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~-~eA~~~ 147 (167)
..+.+|..+|++..+..|.++..++.+|.+.. .++++++|++.+++|+..+|+++.++.++..+... +|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHH
Confidence 46889999999988888899999999998875 89999999999999999999999999999988888 8887 778899
Q ss_pred HHHHHHhCCCCHHHH
Q 046296 148 FDQAVKSAPDDWLNL 162 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l 162 (167)
+.++...+|+.|.+.
T Consensus 259 l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 259 LSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCHHHTTTSHHHH
T ss_pred HHHHHHhCCCChHHH
Confidence 999999999998764
No 135
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.43 E-value=6.1e-07 Score=54.16 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD 132 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~ 132 (167)
.++..+|.++. ..|++++|+++|+++|+.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45666666664 5677777777777777777777776666653
No 136
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.43 E-value=2.3e-07 Score=81.54 Aligned_cols=98 Identities=18% Similarity=0.061 Sum_probs=90.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
++..++++.|+..|-+||+++|+++.++.+.+..+. +.+++-.|+.-+.+||+++|....+++..|.+... .+++.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHH
Confidence 455688999999999999999999999999886654 78999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHh
Q 046296 145 ESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~ 164 (167)
...|+....+.|+++.+.-.
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHH
Confidence 99999999999999987643
No 137
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.43 E-value=4e-06 Score=63.23 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG----NILSLYADLIWQAHKDASR 143 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----~al~~lA~~l~~~~g~~~e 143 (167)
.++++.|++.|.++|.+.|.++.+++|.|..+. .+++.++|+.-+.+|+++.-... .++...+.+|.. +|+-+.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchHH
Confidence 368999999999999999999999999999997 79999999999999999975433 455667888887 999999
Q ss_pred HHHHHHHHHHhCCC
Q 046296 144 AESYFDQAVKSAPD 157 (167)
Q Consensus 144 A~~~~e~Al~l~P~ 157 (167)
|..-|+.|-++...
T Consensus 134 AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 134 ARADFEAAAQLGSK 147 (175)
T ss_pred HHHhHHHHHHhCCH
Confidence 99999999888654
No 138
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=3.2e-07 Score=78.17 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=55.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---GDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---~~~~al~~lA~~l~~~~g~~~ 142 (167)
+-.++.+-|+.+|++.|++--.+|+.+.|++.+.. ..++++-++..|+||+.... .-+++|++++.+... .||+.
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~n 412 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFN 412 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchH
Confidence 33445556666666666666666666666655543 45556666666666655432 224556666665555 56666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 046296 143 RAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
-|.+.|+-||..+|++..++.|+
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhH
Confidence 66666666666666666555554
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=2e-06 Score=79.21 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=91.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
++...++.++|..++.+|-.++|-.+..|+..+..+. .++..++|.+.|.-|+.+||+++.++..+|.++.+ .|+..-
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~l 736 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRL 736 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcch
Confidence 4455578889999999999999999999999998875 89999999999999999999999999999999999 998777
Q ss_pred HHH--HHHHHHHhCCCCHHHHHhc
Q 046296 144 AES--YFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 144 A~~--~~e~Al~l~P~~~~~l~~y 165 (167)
|.. .+..|++++|.++.+|.++
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHH
Confidence 777 9999999999999998764
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=3.3e-06 Score=69.91 Aligned_cols=74 Identities=19% Similarity=0.078 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+...++..|..+....+++++|+..|++.|+..|++ +.+++.+|.+++. .+++++|+.+|+++++..|+++.+-
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchh
Confidence 456667777665435789999999999999999998 5899999999999 9999999999999999999876433
No 141
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.1e-06 Score=75.86 Aligned_cols=96 Identities=25% Similarity=0.078 Sum_probs=83.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..|..++++++|+.+|.+...+=-+++++++.+|.++. .+.+..+|++++.++..+-|++|.++..|+.+|-+ .|+-.
T Consensus 532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdks 609 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKS 609 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchh
Confidence 45677899999999999998888899999999999885 89999999999999999999999999999999887 78777
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 046296 143 RAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~ 160 (167)
+|.+++-...+.-|.|..
T Consensus 610 qafq~~ydsyryfp~nie 627 (840)
T KOG2003|consen 610 QAFQCHYDSYRYFPCNIE 627 (840)
T ss_pred hhhhhhhhcccccCcchH
Confidence 777777777777776653
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=2.1e-06 Score=81.31 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 73 STDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAV 152 (167)
Q Consensus 73 ~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al 152 (167)
.++.+|-+.+-..|.+..+++.+|.++. .+++.++|.+.|+++|+++|+|+.++.+||..|.. . +.++|++++.+|+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV 176 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAI 176 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHH
Confidence 5556666666667777788999998875 78999999999999999999999999999988888 6 8899999998888
Q ss_pred Hh
Q 046296 153 KS 154 (167)
Q Consensus 153 ~l 154 (167)
+.
T Consensus 177 ~~ 178 (906)
T PRK14720 177 YR 178 (906)
T ss_pred HH
Confidence 76
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.35 E-value=3.5e-06 Score=68.81 Aligned_cols=77 Identities=12% Similarity=-0.066 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
..+..++..|..+. ..+++++|++.|++++...|..+.+. ..+|.+++. .+++++|+.+|++.+++.|+++.+-.
T Consensus 30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 35666777777775 68999999999999999999987665 789999999 99999999999999999999986543
Q ss_pred hc
Q 046296 164 KL 165 (167)
Q Consensus 164 ~y 165 (167)
.+
T Consensus 108 a~ 109 (243)
T PRK10866 108 VL 109 (243)
T ss_pred HH
Confidence 33
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1e-06 Score=76.57 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=77.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS------------LYA 131 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~------------~lA 131 (167)
.+.-.+++++|...--..+++++.|..+++--+.+++ ...+.++|+.+|+++|+++|++..+-. .-|
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 3444577888888888888888888888887777776 678888888888888888887754433 334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 046296 132 DLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLY 166 (167)
Q Consensus 132 ~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~yy 166 (167)
.-.++ .|++.+|.+.|..||.++|++....+.+|
T Consensus 257 N~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 257 NDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred hhHhh-ccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 55666 88888888888888888888877666665
No 145
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.34 E-value=1.5e-06 Score=52.36 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
|.++..+|.++.. +|++++|+++|+++|+.+|+|+.++..+
T Consensus 1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4678899999999 9999999999999999999999988765
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.32 E-value=7.5e-06 Score=60.24 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~ 157 (167)
|.+++++|.++. ..|+.++|+.+|++|+...+.. ..++..++..+.. .|++++|+.++++++...|+
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPD 70 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Confidence 457888999886 8999999999999999986554 5788899999999 99999999999999999898
No 147
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-06 Score=73.84 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=85.0
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------------------------------HcCCHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKE---------------------------------VRGDFAK 108 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---------------------------------~~gd~e~ 108 (167)
+..|+..|++++|+..|+++.-+||.+...+-.||.+|.. ..+++..
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 3567888999999999999999999998887777765531 2357888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
|+.+-+|+|+.+|++..++...|.++.. .++.++|+-.|+.|+.+.|..-.
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHH
Confidence 9999999999999999999999999999 99999999999999999997654
No 148
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.29 E-value=5e-06 Score=75.51 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=76.0
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
...|+.++|..+.+.+++.+|.+...|.-++.+.. ...+|++|+++|+.|+.++|+|..+|..++.+..+ +++++-..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHH
Confidence 34577888888888888888888888888887665 67888888888888888888888888888888887 88888887
Q ss_pred HHHHHHHHhCCCCHHHH
Q 046296 146 SYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 146 ~~~e~Al~l~P~~~~~l 162 (167)
..-.+.+++.|.+-..|
T Consensus 130 ~tr~~LLql~~~~ra~w 146 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASW 146 (700)
T ss_pred HHHHHHHHhhhhhHHHH
Confidence 77888888888765444
No 149
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.29 E-value=2.4e-06 Score=47.92 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
+.+++.+|.+++. ++++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3566677777777 777777777777777777764
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=4e-06 Score=79.18 Aligned_cols=94 Identities=18% Similarity=0.085 Sum_probs=83.1
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--AHKDASR 143 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--~~g~~~e 143 (167)
.++.+|++|++..+++|+.+|+|..++..++..+....++.++|.++|..|.+++|++.-+|--|+.+|.. ..-++++
T Consensus 13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~ 92 (1238)
T KOG1127|consen 13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDR 92 (1238)
T ss_pred HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhH
Confidence 34578999999999999999999999999999998544559999999999999999999999999998876 3467889
Q ss_pred HHHHHHHHHHhCCCCH
Q 046296 144 AESYFDQAVKSAPDDW 159 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~ 159 (167)
+-.+|++++-+.|++.
T Consensus 93 ~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 93 AAKCYQRAVLILENQS 108 (1238)
T ss_pred hHHHHHHHHHhhhhhh
Confidence 9999999998888654
No 151
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.2e-05 Score=71.46 Aligned_cols=94 Identities=12% Similarity=0.200 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
.+-...|++|+...|.++..|.+|..+.. ..+.+.+-...|.+++..+|++|..|..-|...++..-+.+.|..+|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35677899999999999999999998775 67779999999999999999999999999999998444599999999999
Q ss_pred HHhCCCCHHHHHhcc
Q 046296 152 VKSAPDDWLNLIKLY 166 (167)
Q Consensus 152 l~l~P~~~~~l~~yy 166 (167)
|+.+|++|.++.-|+
T Consensus 167 LR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYF 181 (568)
T ss_pred hhcCCCChHHHHHHH
Confidence 999999998886653
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=98.27 E-value=4.1e-06 Score=64.81 Aligned_cols=76 Identities=13% Similarity=-0.025 Sum_probs=68.2
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
+.++..+..+.+|.-++ ..|++++|+.+|+-+...+|.++..+..||.++.. +++|++|+..|-.|..+++++|..
T Consensus 32 is~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCc
Confidence 44555667788888777 79999999999999999999999999999999999 999999999999999999998754
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=8.8e-06 Score=69.12 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~e 143 (167)
+....++++|...+++|++.+|+...+-..++.+.. ..|++++|++.++++++.||.. ++++..|..+|.. .|+.++
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~ 267 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE 267 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence 445578999999999999999999999999999886 8999999999999999999975 5778888889998 999999
Q ss_pred HHHHHHHHHHhCCCCHHHH
Q 046296 144 AESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l 162 (167)
.+..+.++++..|.....+
T Consensus 268 ~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 268 GLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HHHHHHHHHHccCCccHHH
Confidence 9999999999988765433
No 154
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.25 E-value=2.3e-06 Score=48.35 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~ 157 (167)
+.+|+++|.+++. ++++++|+.+|++||+++|+
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 3456667777776 77777777777777777765
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.2e-06 Score=59.37 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 103 RGDFAKAEELCGRAILANPG--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 103 ~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.++++.|+.+|+++++.+|. +..+++.+|.+++. ++++++|+.++++ ++.+|.++..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHH
Confidence 57899999999999999995 56677788999999 9999999999999 88888775443
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.24 E-value=2.7e-06 Score=70.67 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
+..+.|...|++|++..+....+|..+|.+-+...++.+.|...|+++++.-|.+..+|..|...+.. .++.+.|..+|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf 93 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 45778888888888666667788888887644235666668888888888888888888888888887 88888888888
Q ss_pred HHHHHhCCCCH
Q 046296 149 DQAVKSAPDDW 159 (167)
Q Consensus 149 e~Al~l~P~~~ 159 (167)
++++..-|...
T Consensus 94 er~i~~l~~~~ 104 (280)
T PF05843_consen 94 ERAISSLPKEK 104 (280)
T ss_dssp HHHCCTSSCHH
T ss_pred HHHHHhcCchh
Confidence 88888766554
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=1.7e-06 Score=57.54 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=46.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhC---C-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEAN---P-GN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~---P-~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
.+|..++++++|+.+|++++++. + ++ +.++.++|.++. .++++++|++++++|+++
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999762 2 22 567889999887 899999999999999986
No 158
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=1.5e-05 Score=71.82 Aligned_cols=91 Identities=23% Similarity=0.152 Sum_probs=77.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
+.|...+++++|+.+.++||+..|..++.+...|.+|. ..|++.+|.++++.|..+|+.|-.+-...+-.+++ .++.+
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e 279 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIE 279 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHH
Confidence 44667788999999999999999999999999999987 89999999999999999999998888888888888 89999
Q ss_pred HHHHHHHHHHHhC
Q 046296 143 RAESYFDQAVKSA 155 (167)
Q Consensus 143 eA~~~~e~Al~l~ 155 (167)
+|++.+..-.+.+
T Consensus 280 ~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 280 EAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhhcCCC
Confidence 9998876654443
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.16 E-value=7e-06 Score=77.60 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=85.7
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
-+|...+++-+|+..|+.|++.+|++...|..++.++. ..|++..|++.|.||..++|.+..+.+..|.+... .|.|.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHH
Confidence 46777899999999999999999999999999999997 79999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhCC
Q 046296 143 RAESYFDQAVKSAP 156 (167)
Q Consensus 143 eA~~~~e~Al~l~P 156 (167)
+|+..++..|....
T Consensus 648 eald~l~~ii~~~s 661 (1238)
T KOG1127|consen 648 EALDALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887644
No 160
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.16 E-value=1.2e-05 Score=73.43 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
+++.++|+++++++|+..|..+.+|..+++++. ++++++.|.+.|..-++.-|+.+..|..++.+--. .++.-+|...
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence 467889999999999999999999999999885 78888888888888888888888888888887776 7788888888
Q ss_pred HHHHHHhCCCCHHHH
Q 046296 148 FDQAVKSAPDDWLNL 162 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l 162 (167)
++++...+|.++..+
T Consensus 742 ldrarlkNPk~~~lw 756 (913)
T KOG0495|consen 742 LDRARLKNPKNALLW 756 (913)
T ss_pred HHHHHhcCCCcchhH
Confidence 888888888887554
No 161
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=4.1e-06 Score=76.84 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=77.9
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHHcCCHHHHHHHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARF----------------------------LKEVRGDFAKAEELCGRA 116 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~----------------------------l~~~~gd~e~A~~~~~rA 116 (167)
|...++..+|..+.++-++ .|+++..|..++.+ .+ ...+|.++..++++.
T Consensus 434 Y~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 434 YLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERS 511 (777)
T ss_pred HHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHH
Confidence 4444566666666666666 44445444444333 22 357899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 117 ILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 117 l~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
++++|-....|+.++.+.++ ..+++.|.++|.+++.++|++...+.|+
T Consensus 512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 99999999999999999999 9999999999999999999999998876
No 162
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.8e-05 Score=64.10 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred hhhcCCChHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEA--------NPGNA----------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l--------~P~n~----------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
-.++.+++.+|...|+.||.. .|..| ..+.||+.++. ..++|-++++++...|..+|.|..
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHH
Confidence 445778999999999998743 45554 35678888886 799999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
+++..|.+... .=+.++|..-|.++|+++|.-..+
T Consensus 266 A~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 266 AYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999988 888999999999999999976543
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.09 E-value=1.1e-05 Score=45.12 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
|.+|+.+|.++. ..+++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 568899999987 8999999999999999999986
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.08 E-value=0.00014 Score=52.59 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=68.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-DGNILSLYADLIWQAHK 139 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P---~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-~~~al~~lA~~l~~~~g 139 (167)
+|...+++++|..+|++++..+| .....+..+...+. ..+++++|+..+.+++...|. ....+..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 46667788888888888877776 23444444444443 567888888888888888888 67777888888877 77
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 046296 140 DASRAESYFDQAVKSAPD 157 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~ 157 (167)
++++|+.++.+++...|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 217 KYEEALEYYEKALELDPD 234 (291)
T ss_pred cHHHHHHHHHHHHhhCcc
Confidence 888888888888888876
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.08 E-value=2.6e-05 Score=59.00 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.+..++.-|.-.. ..++|.+|++.|+.....-|. ...+...++.++++ .+++++|+..+++-|+++|.++.+-..
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4566777777765 799999999999999999885 45788899999999 999999999999999999999866555
Q ss_pred cc
Q 046296 165 LY 166 (167)
Q Consensus 165 yy 166 (167)
+|
T Consensus 87 ~Y 88 (142)
T PF13512_consen 87 YY 88 (142)
T ss_pred HH
Confidence 44
No 166
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=8.9e-06 Score=45.87 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
+.+|+++|.++. .++++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468899999887 8999999999999999999974
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.06 E-value=3.3e-05 Score=61.03 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.+..++..|..+. ..+++.+|+..|++++...|.+ +.++..++.+++. .+++++|+..|++.++..|+++.+-..
T Consensus 4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 4677888888776 7999999999999999998865 5788899999999 999999999999999999998855433
No 168
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.7e-05 Score=67.51 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=81.3
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~ 137 (167)
|+-|++..+|..|+.+|.+.|+..-.| +..++|.|.+.. ..++|-.|+.-+.+|+.++|.+.-+++.-|.++++
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e- 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE- 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence 467888889999999999999985544 556777776665 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 046296 138 HKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~ 158 (167)
..++++|..+++..++++-..
T Consensus 166 Le~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHHH
Confidence 999999988888887765443
No 169
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.00 E-value=3.9e-05 Score=70.29 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=92.3
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+|+|.++++.+.|...|..-++.-|+.+..|..++.+- +..+.+-+|...++++...||+++..|...-.+-+. .|+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence 47888999999999999999999999999999999865 578899999999999999999999999988888888 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
++|...+-+||+--|++...++
T Consensus 770 ~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHH
Confidence 9999999999999999876653
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.00 E-value=4.4e-05 Score=74.34 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=92.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--DGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~g~ 140 (167)
.+|.+-..+++|.++|+++++..-+-..+|..|+.+|. .+.+-++|...+.|||+.-|. +..+..-.|.+-|+ .|+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCC
Confidence 36778889999999999999999999999999999996 677789999999999999998 88999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 141 ASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
.+++..+|+-.|...|....+|.-|
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999999988887655
No 171
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.99 E-value=1.1e-05 Score=68.43 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=50.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD 132 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~ 132 (167)
++|+.++|..+|+.|++++|++|+++..++.|.. ...++-+|-.+|-+|+.++|.+.+++.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4577888888888888888888888888887774 5677788888888888888888877776554
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=8.2e-05 Score=61.80 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~~g~~~eA 144 (167)
.++.+.|...|+++++..|.++.+|..|..+|. ..++.+.|..+|++++..-|... .+|..+..+-.. .|+.+..
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v 126 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK-YGDLESV 126 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHH
Confidence 456777999999999999999999999999997 79999999999999999877665 677777777777 8999999
Q ss_pred HHHHHHHHHhCCCCHHH
Q 046296 145 ESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~ 161 (167)
.++.+++.++-|++..+
T Consensus 127 ~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 127 RKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHHhhhhhHH
Confidence 99999999999986643
No 173
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.99 E-value=0.00011 Score=63.36 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
.++...|+.+..+.|++.|=++..+-..|.++. ..++..+|+.-++.|-++..++.+.++.++.+++. .++.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHH
Confidence 468999999999999999999999999999886 89999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCCHH
Q 046296 148 FDQAVKSAPDDWL 160 (167)
Q Consensus 148 ~e~Al~l~P~~~~ 160 (167)
++..|+++|+...
T Consensus 246 iRECLKldpdHK~ 258 (504)
T KOG0624|consen 246 IRECLKLDPDHKL 258 (504)
T ss_pred HHHHHccCcchhh
Confidence 9999999998754
No 174
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.99 E-value=2.5e-05 Score=66.34 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=58.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
..|+.++|..+|+.|+.++|.+++++..++.+.-. ..+.-+|-++|-+||.++|.|..++.|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 68999999999999999999999999999999988 899999999999999999999988865
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.94 E-value=0.00028 Score=52.22 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=63.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG 124 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~----------------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~ 124 (167)
..++.+.++..+++++.+...+. .++..++..+. ..+++++|+.++++++.++|.+.
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCH
Confidence 34678888999999998853321 11223444443 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
.++..+-.++.. +|++.+|+++|++..+
T Consensus 97 ~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 97 EAYRLLMRALAA-QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 999999999999 9999999999998855
No 176
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.93 E-value=2.9e-06 Score=72.27 Aligned_cols=89 Identities=20% Similarity=0.072 Sum_probs=81.1
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
..+.++.|+..|.++|+++|..+.++...+.++. ..++..+|+.-|..|++++|+.+.-+-..+.+... ++++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHH
Confidence 4577999999999999999999999999999886 78999999999999999999999888888888887 999999999
Q ss_pred HHHHHHHhCCC
Q 046296 147 YFDQAVKSAPD 157 (167)
Q Consensus 147 ~~e~Al~l~P~ 157 (167)
++..|++++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999998654
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.89 E-value=0.0004 Score=50.18 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=82.3
Q ss_pred hhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+...++++.|+..+.++++..|. ....+..++..+. ..+++++|+..+.+++...|.....+..++..+.. .+.+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-LGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-cCCHHH
Confidence 34557899999999999999999 7999999998886 78899999999999999999988888888888885 899999
Q ss_pred HHHHHHHHHHhCCC
Q 046296 144 AESYFDQAVKSAPD 157 (167)
Q Consensus 144 A~~~~e~Al~l~P~ 157 (167)
|...++++++..|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999996
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.87 E-value=0.0001 Score=66.49 Aligned_cols=69 Identities=23% Similarity=0.173 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
+++.+|..+. ..+++++|++++++||++.|..++.++..|.++-. .|++.+|..+++.|.++++.|-++
T Consensus 196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHH
Confidence 4466787765 79999999999999999999999999999999999 999999999999999999987654
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.86 E-value=0.00013 Score=58.13 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=75.6
Q ss_pred hhcCCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCH
Q 046296 65 SNNNHGSSSTDAYNEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~-l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~al~~lA~~l~~~~g~~ 141 (167)
....|++.+|..+|++++. +...++..+..+++..+ ..+++..|...+++..+.+| ..|..+..++.+|.. +|++
T Consensus 99 l~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~ 176 (251)
T COG4700 99 LAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKY 176 (251)
T ss_pred HHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCc
Confidence 3445788888999988886 56778888888888887 68889999999999998888 456777788888888 8999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 046296 142 SRAESYFDQAVKSAPDD 158 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~ 158 (167)
+.|+..|+.++.-.|.-
T Consensus 177 a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 177 ADAESAFEVAISYYPGP 193 (251)
T ss_pred hhHHHHHHHHHHhCCCH
Confidence 99999999999888764
No 180
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.85 E-value=8.9e-05 Score=58.24 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPGDGNILSLYAD 132 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----------gd~e~A~~~~~rAl~l~P~~~~al~~lA~ 132 (167)
.-+++|+.-|++||.++|+...+++++++++. .. .-|++|..+|++|+..+|++......|-.
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34788999999999999999999999999875 22 23789999999999999999877655533
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.84 E-value=0.00017 Score=59.38 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=77.3
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~ 136 (167)
+.-.+.+++++|+..|+++....|..+ .++..++..++ ..++++.|+..+++-+++.|.++ .+++..+..++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 344567899999999999999999875 56777887777 79999999999999999998775 455666666655
Q ss_pred Hc----CC---HHHHHHHHHHHHHhCCCCHHH
Q 046296 137 AH----KD---ASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 137 ~~----g~---~~eA~~~~e~Al~l~P~~~~~ 161 (167)
.. .| ..+|+.-|+..|+.-|++.++
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 11 12 237889999999999998754
No 182
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.84 E-value=3.8e-05 Score=43.08 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~ 157 (167)
.+++.+|.++.. ++++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 456677777777 77777777777777777774
No 183
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.78 E-value=2.9e-05 Score=65.89 Aligned_cols=88 Identities=6% Similarity=0.131 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhC
Q 046296 77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD-LIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 77 ~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~-~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
.|.++...-|+++.+|..++.... ..+.+.+-...|.+++..+|.|++.|...+. -++. ..+++.+...|.++|+.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-IANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-hccHHHHHHHHHhhhccC
Confidence 467777788999999999998765 7889999999999999999999999988444 4455 899999999999999999
Q ss_pred CCCHHHHHhcc
Q 046296 156 PDDWLNLIKLY 166 (167)
Q Consensus 156 P~~~~~l~~yy 166 (167)
|++|.+|+.|+
T Consensus 173 ~~~p~iw~eyf 183 (435)
T COG5191 173 SRSPRIWIEYF 183 (435)
T ss_pred CCCchHHHHHH
Confidence 99999997764
No 184
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.77 E-value=0.0003 Score=60.95 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=61.7
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
+...+++++|.+..+++++..-+.. +..+.-.+ ..++..+=++..++.++..|++|..+..+|.++++ .+.+.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHH
Confidence 3444777777777777777655443 22222223 35677777777777777777777777777777777 7777777
Q ss_pred HHHHHHHHHhCCCCH
Q 046296 145 ESYFDQAVKSAPDDW 159 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~ 159 (167)
.++|+.|++..|+..
T Consensus 348 ~~~leaAl~~~~s~~ 362 (400)
T COG3071 348 SEALEAALKLRPSAS 362 (400)
T ss_pred HHHHHHHHhcCCChh
Confidence 777777777777644
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00021 Score=59.37 Aligned_cols=100 Identities=17% Similarity=0.046 Sum_probs=61.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLK---EVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~---~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g 139 (167)
++..+.++++-|+..++++.+++.+.... .||..+. .-...+..|.-+|+..-+.-|..+..+.-.|.+.+. ++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLt--QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~ 221 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLT--QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hc
Confidence 34455566666666666666665543322 1222111 012346666667777666666666667777777777 77
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 140 DASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+|++|...++.||..+|++|.+++|+
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 77777777777777777777777664
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.00024 Score=66.75 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
..++.+|.+...+.++..|+-+.+...-|..+. +.++.++|..+++..-..-|+|...+..+-.+|.+ ++++++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence 358999999999999999999999988888886 89999999988888777788899999999999999 9999999999
Q ss_pred HHHHHHhCCCCHHHHHh
Q 046296 148 FDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l~~ 164 (167)
|+++++.+|+ ...+.-
T Consensus 100 Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYH 115 (932)
T ss_pred HHHHHhhCCc-HHHHHH
Confidence 9999999998 544433
No 187
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.71 E-value=0.00014 Score=66.10 Aligned_cols=99 Identities=20% Similarity=0.074 Sum_probs=86.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
++..+|+...|++++++|+-..|.. ...+.++|.++. ..+....|-.++.+++.++-..|-.++.++.+++. ..+.+
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~ 693 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNIS 693 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhH
Confidence 3445689999999999999999974 456778999886 67788999999999999998889999999999998 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.|++.|++|++++|+++.....
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999865433
No 188
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.00025 Score=63.17 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=85.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
++-.+++++.+|...|++||..+-.|...|..|+.+-. .......|...+.+||.+-|.--..|+.|-.+--. .|+.+
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-LgNi~ 158 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LGNIA 158 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hcccH
Confidence 45667889999999999999999999999999999865 67889999999999999999999999998777666 99999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 046296 143 RAESYFDQAVKSAPDDW 159 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~ 159 (167)
-|.++|++-+...|+..
T Consensus 159 gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHHHHcCCCcHH
Confidence 99999999999999753
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.00013 Score=60.35 Aligned_cols=85 Identities=25% Similarity=0.243 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--GD----GNILSLYADLIW 135 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~--P~n----~~~l~~lA~~l~~~~-gd~e~A~~~~~rAl~l~P--~~----~~al~~lA~~l~ 135 (167)
.++++|+.+|++|+++. ..+ +.++.++|.++. .. +++++|+++|++|+++-. +. ...+..+|.++.
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 38889999999998872 222 456778888775 55 799999999999998732 12 355567888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 046296 136 QAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 136 ~~~g~~~eA~~~~e~Al~l~ 155 (167)
. .++|++|++.|++++...
T Consensus 167 ~-l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 167 R-LGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp H-TT-HHHHHHHHHHHHHTC
T ss_pred H-hCCHHHHHHHHHHHHHHh
Confidence 8 999999999999998753
No 190
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.66 E-value=0.0012 Score=56.02 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 76 AYNEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-----------d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
..|++.++.+|.|..+|..|..+-..... -.+.-+.+|++||+.+|++...+..|-.+..+ .-+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence 56889999999999999998876431111 14667789999999999999998888777777 7788899
Q ss_pred HHHHHHHHHhCCCCHHHHHhc
Q 046296 145 ESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~y 165 (167)
.+-+++++..+|+++.++..|
T Consensus 85 ~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHH
Confidence 999999999999999888665
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.61 E-value=0.00034 Score=57.93 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=67.5
Q ss_pred chhhcC-CChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHH
Q 046296 63 NYSNNN-HGSSSTDAYNEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DG---NILS 128 (167)
Q Consensus 63 ~~y~~~-g~~d~A~~~~~kAL~l~P--~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~---~al~ 128 (167)
.+|... +++++|+.+|++|+++.. +. ..++..+|.++. ..++|++|+++|++.+...-+ .. ..+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 467777 899999999999999732 22 345667888776 799999999999999875322 12 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
...++++. .+|+..|...|++....+|..
T Consensus 201 ~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 201 KAILCHLA-MGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 44556666 899999999999999999854
No 192
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0011 Score=55.20 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS-RAESY 147 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~-eA~~~ 147 (167)
.++..|.-+|++.-+..|-.+..++..|.+.. .++++++|+..++.||..+|++|+++.|+-.+-.. .|... --.++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence 36889999999999989999999999998775 89999999999999999999999999999887777 76654 45678
Q ss_pred HHHHHHhCCCCHHH
Q 046296 148 FDQAVKSAPDDWLN 161 (167)
Q Consensus 148 ~e~Al~l~P~~~~~ 161 (167)
+.+.....|..+.+
T Consensus 265 l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhcCCcchHH
Confidence 88888889988765
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.58 E-value=0.00091 Score=58.02 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
++...=++..++.++..|++|..+..++..+. ..+.+.+|..+|+.|++.-|... .+..+|.++-+ +|+..+|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~-~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSAS-DYAELADALDQ-LGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHH-cCChHHHHHHH
Confidence 56777788899999999999999999999876 89999999999999999887654 45688999999 99999999999
Q ss_pred HHHHHh
Q 046296 149 DQAVKS 154 (167)
Q Consensus 149 e~Al~l 154 (167)
++++..
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 999854
No 194
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0019 Score=54.26 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=74.4
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG------------------------------- 114 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~------------------------------- 114 (167)
...+++..|...|..++...|++..+...|+.++. ..++.+.|...+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 45688999999999999999999999999999886 6777765554332
Q ss_pred ---HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 115 ---RAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 115 ---rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
+.+..+|+|.++.+.+|..+.. .|++++|.+.+-..++.+-
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence 2345689999999999999999 9999999999988888744
No 195
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.50 E-value=0.0013 Score=58.67 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~~eA 144 (167)
.+.+.|.+.+++.++..|+.+..++..|+++. ..+++++|++.|++++..... ..-.++.+++++.. +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 57999999999999999999999999999987 899999999999999854332 23455678999988 9999999
Q ss_pred HHHHHHHHHhCCC
Q 046296 145 ESYFDQAVKSAPD 157 (167)
Q Consensus 145 ~~~~e~Al~l~P~ 157 (167)
..+|.+.++.+.-
T Consensus 325 ~~~f~~L~~~s~W 337 (468)
T PF10300_consen 325 AEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHhcccc
Confidence 9999999997553
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.49 E-value=0.00083 Score=55.35 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.+..|++-+.... ..+++++|+..|+++....|.. ..++..++.++++ .+++++|+.++++-+++.|.++.+-..
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4566677676664 7999999999999999998865 4778889999999 999999999999999999999876655
Q ss_pred ccC
Q 046296 165 LYL 167 (167)
Q Consensus 165 yy~ 167 (167)
+||
T Consensus 111 ~Yl 113 (254)
T COG4105 111 YYL 113 (254)
T ss_pred HHH
Confidence 553
No 197
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00026 Score=39.58 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
.+|+.++.++. ..+++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 57888999886 7999999999999999999953
No 198
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00089 Score=60.71 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=75.0
Q ss_pred cchhhcCCChHHHHHHHHHHHHhC---------------------------CC----CHHHHHHHHHHHHHHcCCHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEAN---------------------------PG----NALLLGNYARFLKEVRGDFAKAE 110 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~---------------------------P~----n~~~l~~lA~~l~~~~gd~e~A~ 110 (167)
+++.++.++|++|...|+..++-+ |. ..+.++|.|.++. ..++|.+|+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gky~qA~ 195 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGKYNQAI 195 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hcccHHHHH
Confidence 356778889999999998884332 22 3346778888776 789999999
Q ss_pred HHHHHHHHh--------CCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 111 ELCGRAILA--------NPG-------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 111 ~~~~rAl~l--------~P~-------~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
+++++|+++ +-+ -..+...++.++.. +|+-+||...|...|+.+|-|...
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCCchH
Confidence 999999543 111 13456678889998 999999999999999999977643
No 199
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.45 E-value=0.00084 Score=59.96 Aligned_cols=85 Identities=21% Similarity=0.130 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CC----
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------GD---- 123 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---------------------~~---- 123 (167)
.+..+-+++-++||+++|+-+.++.-||. +...-..+|+++|++|++... .+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 45677788899999999999999887774 345567888888888886521 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~ 157 (167)
..+...+|.++++ .|+.+||++.|+..++..|.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence 3455678999998 99999999999999998886
No 200
>PLN03077 Protein ECB2; Provisional
Probab=97.45 E-value=0.0011 Score=62.60 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=44.5
Q ss_pred cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
+.+.+++|..+|+++.+..+- +...+..+..+|. +.|++++|++++++. .+.|+ +.+|..+-..+.. .++.+.|
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~~ 676 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVELG 676 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHHH
Confidence 345566666666666543222 1234444444444 456666666555543 23333 3334444344444 5555555
Q ss_pred HHHHHHHHHhCCCCH
Q 046296 145 ESYFDQAVKSAPDDW 159 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~ 159 (167)
+...+++++++|+++
T Consensus 677 e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 677 ELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHHHHhhCCCCc
Confidence 555555555555554
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.43 E-value=0.00086 Score=61.87 Aligned_cols=86 Identities=7% Similarity=0.009 Sum_probs=52.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
|.+.+++++|.+.++++ ...| +...|..+...+. ..++++.|+..+++++++.|++...+..+..+|.. .|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHH
Confidence 34455666666665543 1223 2344555555554 56667777777777777777766666666666666 7777777
Q ss_pred HHHHHHHHHh
Q 046296 145 ESYFDQAVKS 154 (167)
Q Consensus 145 ~~~~e~Al~l 154 (167)
.+++++..+.
T Consensus 548 ~~v~~~m~~~ 557 (697)
T PLN03081 548 AKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHc
Confidence 7776666543
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.0014 Score=49.64 Aligned_cols=63 Identities=25% Similarity=0.237 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 95 YARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 95 lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
-+..+. ..++++.|++.|.+||.+-|.++.+|.+.+..+.. +++.++|+.-+++|+++.-...
T Consensus 49 ~~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 49 KAIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccc
Confidence 355565 68999999999999999999999999999999998 9999999999999999966543
No 203
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.38 E-value=0.0004 Score=38.23 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
+++.+|.++.. .+++++|+++|+++++..|++
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777 777777777777777777763
No 204
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.36 E-value=0.0028 Score=61.64 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=34.4
Q ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 67 NNHGSSSTDAYNEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+.+++++|+..|+++.+.+ +.++..|+.+...+. ..+++++|+.+|++..+. .|+ ..++..+...+.+ .+++++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~ee 667 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDK 667 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHH
Confidence 3444455555555444443 223333433333333 344444444444444433 222 2233333333333 444444
Q ss_pred HHHHHHHHHH
Q 046296 144 AESYFDQAVK 153 (167)
Q Consensus 144 A~~~~e~Al~ 153 (167)
|+++|+++++
T Consensus 668 A~~l~~eM~k 677 (1060)
T PLN03218 668 AFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0011 Score=54.89 Aligned_cols=67 Identities=27% Similarity=0.257 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 92 LGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
+++.|.-++ ..++|..|+..|..-|+.-|++ +++++.|+.+++. +++|++|..+|..+++-.|+.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCC
Confidence 555566565 6899999999999999999976 6899999999999 99999999999999999998764
No 206
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.33 E-value=0.0004 Score=36.24 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~ 157 (167)
.++..+|.+++. ++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 345666667666 77777777777777776664
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.31 E-value=0.00056 Score=59.05 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
..++-++ .++.|++|+.||.++|.++|.|+..+.+.|.+|++ +.+|..|+.-...||.++-..
T Consensus 102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHH
Confidence 3455565 78999999999999999999999999999999999 999999999999999987543
No 208
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.00095 Score=42.24 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296 91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYA 131 (167)
Q Consensus 91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA 131 (167)
.++.+|..++ ..++|++|..+++++|+++|+|..+.....
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4455565555 677777777777777777777766655443
No 209
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.002 Score=57.60 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=71.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHcCCHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSL--YADLIWQAHKDASRA 144 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~--lA~~l~~~~g~~~eA 144 (167)
+..++++...+|++-|+..|.|-.+|..+|.+-. ..++.+.|..+|+-||....-+..-+.. |-.+-+. .+.+++|
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~eka 526 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKA 526 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHH
Confidence 3467888888888888889988888888887654 7888888888888888765544433333 3344455 6888899
Q ss_pred HHHHHHHHHhCCCCHHHHHhc
Q 046296 145 ESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l~~y 165 (167)
..+|++.|+..+..+ ++.++
T Consensus 527 R~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 527 RALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHHHHHHhcccch-HHHhH
Confidence 999999998888766 55443
No 210
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.0011 Score=54.10 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
..++..+.++ ...|-..-|.--|.+++.+.|+-|.+...++..+.. .++|+.|.+.|.-.++++|.+.+++-
T Consensus 66 ~l~fERGvlY-DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 66 QLLFERGVLY-DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHhcchh-hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHh
Confidence 3444455433 366777888888999999999999999999999998 99999999999999999999988773
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.27 E-value=0.0043 Score=55.56 Aligned_cols=95 Identities=18% Similarity=0.037 Sum_probs=75.3
Q ss_pred cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 046296 67 NNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPGDGNILSLYADLIWQAHKD--- 140 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-~P~~~~al~~lA~~l~~~~g~--- 140 (167)
+.|+.++|++.|+..++.+|. +..++.++..+|. ..+.|.++...+.|-=++ -|+++.+.+.-|.+.++..++
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs 349 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS 349 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence 458899999999999998886 5668889998886 799999999999986544 378888888877766542222
Q ss_pred ------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296 141 ------------ASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 141 ------------~~eA~~~~e~Al~l~P~~~~~l 162 (167)
...|++.+.+|++.+|..|.++
T Consensus 350 ~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred chhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 1347899999999999988665
No 212
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.26 E-value=0.0041 Score=43.35 Aligned_cols=74 Identities=16% Similarity=0.035 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
.+..++++++.+|+|+.+.+.+|..+. ..+++++|++.+-.+++.+|+. ..+.-.+-.++-. .|.-+.-..-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHH
Confidence 456788999999999999999999886 7999999999999999998765 4444444333333 555333333333
No 213
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.26 E-value=0.0012 Score=46.06 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
.+..++++++.+|+|..+.+.+|..+.. .|++++|++.+..+++.+|+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence 4577899999999999999999999999 999999999999999998865
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.26 E-value=0.00064 Score=39.10 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
++.++|.++.. +|++++|+++|+++|.
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 35566777776 7777777777777443
No 215
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.26 E-value=0.0036 Score=45.46 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=69.4
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHH---HcCC-------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKE---VRGD-------FAKAEELCGRAILANPGDGNILSLY 130 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~---~~gd-------~e~A~~~~~rAl~l~P~~~~al~~l 130 (167)
-++++|++-+|+++.+..+..++++... +..-+.++.. ...+ +-.|+++|.+++.+.|+.+..++.+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 4678899999999999999999988743 3333333321 1122 3568899999999999999999998
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 131 ADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 131 A~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
|.-+-. ...|++++..-+++|.+
T Consensus 85 a~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhh-HHHHHHHHHHHHHHhcc
Confidence 887666 67788888888888876
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.24 E-value=0.0023 Score=59.11 Aligned_cols=85 Identities=8% Similarity=-0.040 Sum_probs=36.5
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~e 143 (167)
|.+.+++++|...|+++ .+.+...|+.+...+. ..+++++|+++|++..+.. .-+..++..+..++.. .+++++
T Consensus 269 y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 343 (697)
T PLN03081 269 YSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALLEH 343 (697)
T ss_pred HHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccchHH
Confidence 44445555555555443 2234444444444443 4455555555554443321 1122233333333443 444444
Q ss_pred HHHHHHHHHHh
Q 046296 144 AESYFDQAVKS 154 (167)
Q Consensus 144 A~~~~e~Al~l 154 (167)
|.++++.+++.
T Consensus 344 a~~i~~~m~~~ 354 (697)
T PLN03081 344 AKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0023 Score=55.14 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=65.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPGD---GNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-~P~~---~~al~~lA~~l~~~~g~~~ 142 (167)
.++++-+|...+++.|+-.|.+..++..--..++ ..|+...-...++|.|-. +|+- ..+.-.|+-.+.+ .|-|+
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccch
Confidence 3456777777788888888888877766555554 567777777777777766 6655 4555566667777 77777
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 046296 143 RAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~ 161 (167)
+|++.-++|++++|.++.+
T Consensus 193 dAEk~A~ralqiN~~D~Wa 211 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWA 211 (491)
T ss_pred hHHHHHHhhccCCCcchHH
Confidence 7777777777777777643
No 218
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.21 E-value=0.0056 Score=59.64 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=44.6
Q ss_pred hcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCC
Q 046296 66 NNNHGSSSTDAYNEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l----~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~ 140 (167)
.+.+++++|...|+++.+. .|+ ...++.+...+. ..+++++|+++|++..+.+ +.++.+|..+...|.+ .|+
T Consensus 553 ~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~ 629 (1060)
T PLN03218 553 GQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGD 629 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC
Confidence 3445555555555555442 333 233333333443 4556666666666655554 3344555555555555 666
Q ss_pred HHHHHHHHHHHHHh
Q 046296 141 ASRAESYFDQAVKS 154 (167)
Q Consensus 141 ~~eA~~~~e~Al~l 154 (167)
+++|+.+|++..+.
T Consensus 630 ~deAl~lf~eM~~~ 643 (1060)
T PLN03218 630 WDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666665554
No 219
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.21 E-value=0.0042 Score=58.43 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=71.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYAD 132 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~ 132 (167)
++...+++++|..+++++++..|... .++..++.++. ..+++++|+.++++++.+.... ..++.+++.
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 45667899999999999999655532 34566777765 7999999999999999764321 245667888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 046296 133 LIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 133 ~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+++. +|++++|+.++++++.+
T Consensus 540 ~~~~-~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 540 ILFA-QGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHH-CCCHHHHHHHHHHHHHH
Confidence 9998 99999999999999986
No 220
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0038 Score=56.71 Aligned_cols=95 Identities=18% Similarity=0.096 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLY------ADLIWQAHKDAS 142 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~l------A~~l~~~~g~~~ 142 (167)
+....+...++.++..+|+++.+..+|+..+......+..+....+.+....|++..++..+ +.++-. .++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 159 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRTA 159 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccHH
Confidence 66678888899999999999999999999886544556667777888999999999998887 777776 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHh
Q 046296 143 RAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
++..++++++.+.|.++.++.-
T Consensus 160 ~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 160 EAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhHhH
Confidence 9999999999999999877643
No 221
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0017 Score=52.48 Aligned_cols=70 Identities=19% Similarity=0.068 Sum_probs=61.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~ 133 (167)
.+.++.+.++.|+..+.+||+++|.+..++...|.++. .+..++.|++-|++.++++|....+.-..+.+
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 45677889999999999999999999999999898775 78999999999999999999998776665554
No 222
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0041 Score=56.55 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=67.5
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------------HHHHHcCCHHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYAR---------------------------------FLKEVRGDFAKAEE 111 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~---------------------------------~l~~~~gd~e~A~~ 111 (167)
+.++++|++|+....+.|...|+++.++...-. +++ +.+..++|+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk 100 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALK 100 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHH
Confidence 456688999999999999999998877643322 233 3455555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 112 LCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 112 ~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
.++ -+++.+..++...|.++++ +++|++|...|+..++.+.++.
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchH
Confidence 555 4567777788889999999 9999999999999988776654
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0014 Score=54.92 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=76.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANP------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P------~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~ 137 (167)
+.++-|+.+.|..+|+++-+.+. .+..++.+.+.++. ..+++..|...|.+.++.||.++.+..+.|.++.-
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY- 298 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY- 298 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-
Confidence 44566889999999995544322 24556667776654 68899999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 046296 138 HKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~ 158 (167)
.++...|++.+++++++.|..
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999964
No 224
>PLN03077 Protein ECB2; Provisional
Probab=97.15 E-value=0.0036 Score=59.10 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred hhhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcC
Q 046296 64 YSNNNHGSSSTDAYNEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNILSLYADLIWQAHK 139 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~--l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~al~~lA~~l~~~~g 139 (167)
.|.+.++.++|+.+|+++++ +.|+...+..-+. .+. ..+++++|.++|++..+..+ -+...+..+..++.+ .|
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G 639 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC-ACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AG 639 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CC
Confidence 34556778888888887776 3566555444333 343 57778888888887774432 233556667777777 78
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 046296 140 DASRAESYFDQAVKSAPD 157 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~ 157 (167)
++++|++++++. .+.|+
T Consensus 640 ~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 640 KLTEAYNFINKM-PITPD 656 (857)
T ss_pred CHHHHHHHHHHC-CCCCC
Confidence 888888877764 34554
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0025 Score=55.00 Aligned_cols=87 Identities=20% Similarity=0.136 Sum_probs=73.5
Q ss_pred chhhcCCChHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEA-NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l-~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~ 138 (167)
.+|+-+|+.+.-...+++++-. +|+-| .+...|+..|. ..+-|++|++..++|+++||.+.-+...++.++.. .
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~ 222 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-N 222 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-c
Confidence 5677788888889999999988 77764 44556776675 79999999999999999999999999999999988 8
Q ss_pred CCHHHHHHHHHHH
Q 046296 139 KDASRAESYFDQA 151 (167)
Q Consensus 139 g~~~eA~~~~e~A 151 (167)
+++.++.+.+++-
T Consensus 223 ~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 223 GRHKEGKEFMYKT 235 (491)
T ss_pred chhhhHHHHHHhc
Confidence 9999998877654
No 226
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.11 E-value=0.0031 Score=39.88 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+.++.+|..+++ .++|++|..+.+.+|+++|+|..+.
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 356788888888 9999999999999999999988765
No 227
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0066 Score=50.64 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-H
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS-R 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~-e 143 (167)
+.+...-.+|+++-+.+|.++|.|..+|...-.+|.....++.+-++++.+.++-+|+|..+|...-.++-. .+++. +
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~r 131 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFR 131 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccc
Confidence 445567788999999999999999999988777777667788999999999999999999999887666665 78887 7
Q ss_pred HHHHHHHHHHhCCCCHHHH
Q 046296 144 AESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l 162 (167)
-+...+.+|..+..|-.++
T Consensus 132 ELef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred hHHHHHHHHhccccchhhh
Confidence 7888888888777665544
No 228
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.09 E-value=0.0038 Score=61.42 Aligned_cols=91 Identities=14% Similarity=0.300 Sum_probs=83.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
.+.+++++-++|...+++||+.-|. +..+..-.|++.+ ..+|.+.+..+|+-.+...|...+.|.-|...-.. +++
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~ 1649 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGD 1649 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCC
Confidence 3566777888999999999999998 8899999998776 89999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHhC
Q 046296 141 ASRAESYFDQAVKSA 155 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~ 155 (167)
.+-++.+|++++.+.
T Consensus 1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998874
No 229
>PRK10941 hypothetical protein; Provisional
Probab=97.09 E-value=0.0057 Score=50.92 Aligned_cols=67 Identities=15% Similarity=0.010 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
|+=.++ ...+++++|+.+.++.+.++|+++.-+...|.++.+ .+.+..|..-++.-|+..|++|.+.
T Consensus 186 nLK~~~-~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAAL-MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHH-HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHH
Confidence 333334 378999999999999999999999999999999999 9999999999999999999998653
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0031 Score=53.72 Aligned_cols=84 Identities=12% Similarity=-0.071 Sum_probs=76.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
++..+++.|++++..-.+.+|.+...+..++.+++ ..+++..|..+|++.-.+.|........+|..+++ .+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence 67788999999999999999999999999999998 79999999999999999999999999999999998 99999988
Q ss_pred HHHHHH
Q 046296 146 SYFDQA 151 (167)
Q Consensus 146 ~~~e~A 151 (167)
.+....
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 766544
No 231
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.07 E-value=0.0077 Score=45.52 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 88 NALLLGNYARFLKE--VRGDFAKAEELCGRAIL-ANPG-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 88 n~~~l~~lA~~l~~--~~gd~e~A~~~~~rAl~-l~P~-~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.....++||++|-. ...|..+.+.+++..++ ..|. .-+.++.+|..+++ .++|++|++|.+..|+..|+|..++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45667788887741 23467889999999997 5564 45777889999999 9999999999999999999998775
No 232
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0053 Score=53.36 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=56.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCC---------
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANP--------- 121 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl--------------~l~P--------- 121 (167)
|+..+++++|...|+-+.+.+.-+.+.+.++|.+.+ ..+.|.+|.....+|- +++.
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 556788888888888888877777888888887665 4666666655444321 1111
Q ss_pred ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 122 ---GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 122 ---~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
+..+-...+|.+.+. .-.|++|+..|+++|.-+|+.
T Consensus 146 ~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 146 SLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhh
Confidence 001111233444444 556777777777777766653
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0013 Score=58.01 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=74.2
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PG--DGNILSL 129 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~----P~--~~~al~~ 129 (167)
++.|+-.++|++|+..-+.-|++.... ..++.|++.++. ..++++.|+++|++++.+. .. .+...+.
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 467888999999999988877775432 357888998886 7999999999999976543 22 3556678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 130 YADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 130 lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
|+..|.. .+++++||+|+++-|++..
T Consensus 281 LgNtytl-l~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 281 LGNTYTL-LKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8889998 9999999999999888754
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.02 E-value=0.0078 Score=48.20 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=73.5
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
++.+..+++..|...+++..+.+|. .|.....++++|. ..+.+++|+..|+.|+...|. +.+...|+..+.. +|+
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-qgr 208 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-QGR 208 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-hcc
Confidence 4566778999999999999999996 5777788899997 899999999999999998876 4566788999998 998
Q ss_pred HHHHHHHH----HHHHHhCC
Q 046296 141 ASRAESYF----DQAVKSAP 156 (167)
Q Consensus 141 ~~eA~~~~----e~Al~l~P 156 (167)
.++|...+ +.+.+..|
T Consensus 209 ~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 209 LREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hhHHHHHHHHHHHHHHhcch
Confidence 77765544 44444444
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.99 E-value=0.0062 Score=57.28 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=64.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--------DGNILSL 129 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--------~~~al~~ 129 (167)
++...+++++|..+++++++..... ..++.+++.++. ..|++++|+.++++++.+... ...++..
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3456788999999999988764321 234556777775 688999999998888876221 2234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 130 YADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 130 lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
++.+++. +|++++|..++++++.+.
T Consensus 579 la~~~~~-~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 579 RAQLLWE-WARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHH-hcCHHHHHHHHHHhHHhh
Confidence 7778888 888999988888887763
No 236
>PRK10941 hypothetical protein; Provisional
Probab=96.99 E-value=0.0062 Score=50.71 Aligned_cols=69 Identities=9% Similarity=-0.054 Sum_probs=62.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~ 133 (167)
+|.+.+++++|+++.++++.++|++|.-+...|.++. +.+.+..|..-++..|+..|+++.+......+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 5778899999999999999999999999999998886 89999999999999999999999887655444
No 237
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.0073 Score=48.17 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=70.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD 140 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~ 140 (167)
.+...+++++|+..++.++...-+. +.+-.++|.++. ..+.+++|+..+......+ -.+......|.++.. +|+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~ 174 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGD 174 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCc
Confidence 3456689999999999998654332 345567898887 7999999998877654311 123345578999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 046296 141 ASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~ 159 (167)
-++|+..|++|++..++.+
T Consensus 175 k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 175 KQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHHHHHHHHHccCChH
Confidence 9999999999999986655
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.95 E-value=0.012 Score=45.41 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=73.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
..++.+.+...+.-+--+.|+.+.+-..-+.++. .++++.+|+.+++.+.+..|..+.+...++.+|+. +++.+= ..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~W-r~ 98 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPSW-RR 98 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChHH-HH
Confidence 3468899999999999999999999998888775 89999999999999999999999999999999998 888663 23
Q ss_pred HHHHHHHhCC
Q 046296 147 YFDQAVKSAP 156 (167)
Q Consensus 147 ~~e~Al~l~P 156 (167)
+-+++++..|
T Consensus 99 ~A~evle~~~ 108 (160)
T PF09613_consen 99 YADEVLESGA 108 (160)
T ss_pred HHHHHHhcCC
Confidence 3445555554
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.0041 Score=56.26 Aligned_cols=89 Identities=25% Similarity=0.090 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~--~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
....|+..|.++++.-|.....+.+.|.++.. -.++.-.|+.-+..|+++||....+++.|+.++++ .+++.+|++.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence 36678999999999999999999999988752 13577889999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCCH
Q 046296 148 FDQAVKSAPDDW 159 (167)
Q Consensus 148 ~e~Al~l~P~~~ 159 (167)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 888888888543
No 240
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.93 E-value=0.0017 Score=33.63 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
.++..++.++. ..+++++|+.+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence 46778888886 7999999999999999998864
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.0056 Score=45.18 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=46.0
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~ 118 (167)
.+...+++++|+..+++++.++|-+..++..+-.++. ..|+..+|+..|++..+
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999887 89999999999988754
No 242
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.92 E-value=0.0077 Score=56.91 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=81.0
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
..++.+..++|..+++..-..-|++-..+-.+-.++. ..+++++|..+|++|+..+|+ -+.++.+-.++.+ -+.|.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHH
Confidence 3567789999998777777777888888888888886 799999999999999999999 7788888888888 788877
Q ss_pred HHHHHHHHHHhCCCCHHHHHh
Q 046296 144 AESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 144 A~~~~e~Al~l~P~~~~~l~~ 164 (167)
-.+.--+.-+.-|.+++++++
T Consensus 129 qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 129 QQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHHHHhCCcccchHHH
Confidence 666666666788999987754
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.002 Score=53.06 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=55.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
....|..|+.+|.+||.++|..+..+.+-|.++++ ..+++.+..-.++|++++|+....+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHH
Confidence 45679999999999999999999999999999999 9999999999999999999977554
No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.84 E-value=0.0016 Score=53.40 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=49.9
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
..+.++.+.|.+.|.+++++.|....-|+.++... ++.++++.|.+.|++.++++|.+.-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 34557888889999999999999999999888755 5889999999999999999987753
No 245
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.004 Score=54.14 Aligned_cols=85 Identities=13% Similarity=-0.017 Sum_probs=70.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
+.++.++.-|+.+++-.+.++.... .....+|.+++ ..++|++|...|+-+...+.-+++.+.++|.+.|- .|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHH
Confidence 3455689999999998887765543 44455677776 89999999999999999888888999999999998 999999
Q ss_pred HHHHHHHH
Q 046296 144 AESYFDQA 151 (167)
Q Consensus 144 A~~~~e~A 151 (167)
|.+...+|
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98877665
No 246
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.83 E-value=0.003 Score=34.55 Aligned_cols=33 Identities=30% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
++++.+|.++. ..+++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 36788898887 7899999999999999999975
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.83 E-value=0.0028 Score=36.38 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 91 LLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
+|.++|.++. ..+++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4678898886 899999999999995544
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.011 Score=48.69 Aligned_cols=91 Identities=22% Similarity=0.123 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-----HHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-G-----NILSLYADLIWQ 136 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~-----~al~~lA~~l~~ 136 (167)
.+..+|+.+++++|++.-+-- ..+..+|.++.....++++|+.+|++|-+--... . ..+.-.|..-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 355555566666655543321 1222455554323356777777777766543221 1 112222333333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 137 AHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
.++|.+|+..|++..+..-+|+.
T Consensus 167 -leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 167 -LEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred -HHHHHHHHHHHHHHHHHhccchH
Confidence 56777777777777766555553
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.008 Score=53.58 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=69.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS-LYADLIWQA 137 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~-~lA~~l~~~ 137 (167)
.++..+++.++|+..|++++.....- ...++.++.++. .+.++++|..+|.+.++.+.-+...+. ..|.++.+
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~- 352 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM- 352 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-
Confidence 56677899999999999998644443 344567787775 789999999999999998776554444 45666666
Q ss_pred cCCH-------HHHHHHHHHHHHh
Q 046296 138 HKDA-------SRAESYFDQAVKS 154 (167)
Q Consensus 138 ~g~~-------~eA~~~~e~Al~l 154 (167)
.++. ++|.++|+++-.+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 8988 8888888887654
No 250
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.0022 Score=57.47 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred chhhcCCChHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---
Q 046296 63 NYSNNNHGSSSTDAYNEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------ANP--- 121 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kA-L~l~P~--------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~---------l~P--- 121 (167)
++++..+++.+|.+.+... |...|. .-.+|+|++.+.+ ..+.|..+..+|.+|++ +.|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 4566778888888876553 444555 2246788998887 78999999999999996 112
Q ss_pred ------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 122 ------GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 122 ------~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
+.-+++++.+..+.. .|++-.|.++|.+|++.--.||++|-.
T Consensus 327 ~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred eehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 456889999999999 999999999999999988888887743
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.69 E-value=0.0049 Score=35.35 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+.++.++|.++.. ++++++|++++++++++
T Consensus 2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 3567788888888 88888888888888875
No 252
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.68 E-value=0.046 Score=46.30 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH--KDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~--g~~~eA~~~ 147 (167)
-.++-+.+|++||+.+|++...+..|-.... ..-+.++..+.+++++..+|+++..|..|-....... -.+++....
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3567889999999999999999988877765 6678899999999999999999999988766544312 246788888
Q ss_pred HHHHHHh
Q 046296 148 FDQAVKS 154 (167)
Q Consensus 148 ~e~Al~l 154 (167)
|.++|+.
T Consensus 125 y~~~l~~ 131 (321)
T PF08424_consen 125 YEKCLRA 131 (321)
T ss_pred HHHHHHH
Confidence 8888775
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.027 Score=46.72 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=66.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILA-----NPGDGNILSLYAD 132 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l------~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~~~al~~lA~ 132 (167)
.|....++++|..++++|++-..+|...+ -..+.++. ....+.++..+|+||..+ .|+-+..-...|-
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 34455889999999999997666654332 22333343 678899999999999877 3555544445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 133 LIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 133 ~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
-..+ .-++++|+++|++++.+--.+
T Consensus 119 k~le-nv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 119 KALE-NVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence 5666 789999999999998874443
No 254
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.62 E-value=0.034 Score=44.71 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 046296 69 HGSSSTDAYNEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPG------DGNILS 128 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l----~P~n---~~~l~~lA~~l~~~~gd-------~e~A~~~~~rAl~l~P~------~~~al~ 128 (167)
-.+++|++.|.-||-. .+++ +..+..+|.++. ..++ +.+|...|++|++.... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4788999998888753 2222 345666777665 5666 46677777777776532 357888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.+|.+..+ .|++++|+++|.+++..
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 89999999 99999999999999986
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.011 Score=52.91 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=58.1
Q ss_pred hhcC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 65 SNNN-HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133 (167)
Q Consensus 65 y~~~-g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~ 133 (167)
|.++ +.+.+-...|.++|..+|++|..|..-|..+++..-+++.|..+|.++|+.+|+++..|..|-.+
T Consensus 114 f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 114 FCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 3344 34778889999999999999999999888887655569999999999999999999998776543
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.015 Score=48.82 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=76.6
Q ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 046296 69 HGSSSTDAYNEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----AN--PGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~----l~--P~~~~al~~lA~~l~~~~g~~ 141 (167)
++|.-.+..+.+.++.+ |..|.....++.+.. +.||.+.|..+|++.-+ ++ ..+..++.+.+.++.- +++|
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence 56778889999999998 678999999999875 89999999999995443 33 2455677788888888 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~l 162 (167)
.+|...|.+.+..+|.++.+.
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred HHHHHHHhhccccCCCchhhh
Confidence 999999999999999887654
No 257
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0076 Score=51.42 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=62.6
Q ss_pred HHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 81 MIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 81 AL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.++.-| +.+..+.+.+.+++ +.+++++|++-|..|++..--++-+.+++|.+++. .++++.|+++..+.|..
T Consensus 134 LveQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER 207 (459)
T ss_pred HHHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence 445556 56788889998887 79999999999999999999999999999999999 99999999988777654
No 258
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.014 Score=51.71 Aligned_cols=91 Identities=9% Similarity=-0.050 Sum_probs=72.3
Q ss_pred cchhhcCCChHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEAN----PG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANP------GDGNILSL 129 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~----P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P------~~~~al~~ 129 (167)
++.|.-.++++.|+++|++++.+. .. .+..-+.|+..+. ...++++|+.|+.|-|.|.. ....+++.
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS 320 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWS 320 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456777889999999999976553 22 2445567788887 68899999999998776643 45678889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 130 YADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 130 lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
|+..+-. .+..++|+.+.++.+++
T Consensus 321 Lgna~~a-lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 321 LGNAFNA-LGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHHH
Confidence 9999998 99999999999998876
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.032 Score=48.52 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred hhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEA----NPGNALLLGNYARFLKEV---RGDFAKAEELCGR-AILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l----~P~n~~~l~~lA~~l~~~---~gd~e~A~~~~~r-Al~l~P~~~~al~~lA~~l~~ 136 (167)
|..-.+|+.-+++.+..-.+ -++.+.+...||.+|. + .|+.++|+..+.. .....+.+++++..+|.+|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34446788777777776555 4567778888888886 6 7899999999999 555667899999999998754
Q ss_pred H--------cCCHHHHHHHHHHHHHhCCCC
Q 046296 137 A--------HKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 137 ~--------~g~~~eA~~~~e~Al~l~P~~ 158 (167)
. ....++|+.+|.++.+++|+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 1 224679999999999999753
No 260
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.31 E-value=0.0084 Score=49.24 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
..+|.+.|.++|.+|+++.|....-|+.++....+ .++++.|.+.|++.++++|.+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCcccc
Confidence 57899999999999999999999999999998887 9999999999999999999874
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.0095 Score=51.90 Aligned_cols=92 Identities=15% Similarity=-0.030 Sum_probs=73.3
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPG----------DGN 125 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----------~~~ 125 (167)
++++.....+++++++|++|+++..++. .+...++.++. ...|+++|..+..+|.++... ...
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3456666789999999999999866553 34556777665 789999999999999987542 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
+++.++..+.. +|+.-.|.++.++|.++.
T Consensus 208 ~lyhmaValR~-~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 208 SLYHMAVALRL-LGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHH-hcccccHHHHHHHHHHHH
Confidence 67788888888 999999999999998763
No 262
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.28 E-value=0.036 Score=38.49 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=42.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 102 VRGDFAKAEELCGRAILANPG----D-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~----~-----~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
..+|+..|++.+.+.+..... . ..++.++|.+... .|++++|+..+++||++..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 588999998877777665332 2 4566788888888 9999999999999999854
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.27 E-value=0.045 Score=43.77 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCH
Q 046296 68 NHGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~ 141 (167)
+...++|...|.++ +-.| ++++..+.+|.++ ...|.++|+.++.+++++.+. |++++..|+.+++. ++++
T Consensus 119 r~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~ 194 (203)
T PF11207_consen 119 RFGDQEALRRFLQL-EGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNY 194 (203)
T ss_pred ccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcch
Confidence 34556677766654 3333 4788888888766 478899999999999988654 48888999999998 8998
Q ss_pred HHHH
Q 046296 142 SRAE 145 (167)
Q Consensus 142 ~eA~ 145 (167)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 264
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.00 E-value=0.19 Score=38.50 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
..+++++...+..+--+.|+.+.+-..-+.++. .++++.+|+..++...+-.|..+.....++.+++. ++|.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence 467888888888888899999999888887765 89999999999999999999999999999999998 88876
No 265
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.98 E-value=0.042 Score=50.87 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQA--HKDASRA 144 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~--~g~~~eA 144 (167)
+-++.....|.++|.+.--.|....|||.+|. ...-+++|.+.|+|-|.+- |+-.++|..|=...... .-..+.|
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 44555566666666666666666666666664 3445566666666666554 34445555443322220 1345666
Q ss_pred HHHHHHHHHhCC
Q 046296 145 ESYFDQAVKSAP 156 (167)
Q Consensus 145 ~~~~e~Al~l~P 156 (167)
..+|++||+.-|
T Consensus 570 RdLFEqaL~~Cp 581 (835)
T KOG2047|consen 570 RDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHhcCC
Confidence 666666666655
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.97 E-value=0.13 Score=42.73 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=73.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----------------- 122 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~----n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----------------- 122 (167)
+..+.+.++.|..++.++...++. .|.+....+.++. .+++..+|+..++..+...+.
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 445668999999999999887632 5777888899887 799999999999888872111
Q ss_pred -----------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 123 -----------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 123 -----------------~~~al~~lA~~l~~~~------g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
.+.++..+|..... . ..+++++..|++|++++|+...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 234 SLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 12344455555555 5 7888999999999999998876554
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.94 E-value=0.023 Score=32.41 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
..++.++|.++. .++++++|+.++++++++
T Consensus 2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 357889999987 799999999999999976
No 268
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.87 E-value=0.057 Score=49.06 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=67.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 79 EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 79 ~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
++-|+.+|.|..+|+.|-.-+. ...+++....|++.+..-|..+.+|..+....+. ..+|+.-+.+|.+.|...
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence 7889999999999998887653 5589999999999999999999999999999998 999999999999998753
No 269
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.87 E-value=0.057 Score=50.01 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHHcCCHH
Q 046296 69 HGSSSTDAYNEKMIEAN--PGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPGD-G-NILSLYADLIWQAHKDAS 142 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~--P~n~~~l~~lA~~l~~~--~gd~e~A~~~~~rAl~l~P~~-~-~al~~lA~~l~~~~g~~~ 142 (167)
..+++|.+.|++.|.+- |+-.++|+.|-.....+ .-.++.|..+|++||+.-|.. + .++..||.+--+ .|-..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe-~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE-HGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhHHH
Confidence 34677788888877764 45556666544322111 235788888888888877622 2 344456665555 67777
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHhcc
Q 046296 143 RAESYFDQAVKSA-PDDWLNLIKLY 166 (167)
Q Consensus 143 eA~~~~e~Al~l~-P~~~~~l~~yy 166 (167)
.|+..|++|-..- |.+-..+.|.|
T Consensus 604 ~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 604 HAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888888875543 33334444443
No 270
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.86 E-value=0.068 Score=46.54 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILA-----------NPGDGNILSLYADLIWQ 136 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd-~e~A~~~~~rAl~l-----------~P~~~~al~~lA~~l~~ 136 (167)
..+++|+.+|+++.+++|+. ..-.|++.+|. ..+. ++...++-+-.+++ .-.+...+..++.+...
T Consensus 240 ~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL 317 (374)
T PF13281_consen 240 ESLDKAIEWYRKGFEIEPDY-YSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL 317 (374)
T ss_pred HHHHHHHHHHHHHHcCCccc-cchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 34899999999999999754 44445666665 4543 33322222211111 12344445567777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 137 AHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
.+++++|++++++++++.|...+.
T Consensus 318 -~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 318 -AGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred -cCCHHHHHHHHHHHhhcCCcchhH
Confidence 899999999999999999987653
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.82 E-value=0.13 Score=39.80 Aligned_cols=61 Identities=18% Similarity=-0.003 Sum_probs=56.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
..++.+.++.++...-.+.|+.+++...-+++++. .+++.+|+.+|+.+....|..++.-+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHH
Confidence 57799999999999999999999999999999999 99999999999999999998886543
No 272
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.77 E-value=0.029 Score=45.33 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
|+.+|++|+.+.|.+-..++.+|.+.. ..++.=.|+-+|-|++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999999999999998876 68999999999999997766668888888766554
No 273
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.58 E-value=0.018 Score=51.18 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=70.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
++|.+.+++-.|+.-+.+||+++|....+++..|.+.. ..+.+.+|...|++...+.|+++.+...+..+-..
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~------ 118 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI------ 118 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH------
Confidence 67788899999999999999999999999998887765 78999999999999999999999998777665443
Q ss_pred HHHHHHHHHHHhCC
Q 046296 143 RAESYFDQAVKSAP 156 (167)
Q Consensus 143 eA~~~~e~Al~l~P 156 (167)
-.+.-|++++...+
T Consensus 119 vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 119 VSEEKFEKAILTPE 132 (476)
T ss_pred HHHHhhhhcccCCc
Confidence 22333555555444
No 274
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.12 Score=46.53 Aligned_cols=96 Identities=16% Similarity=0.017 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHcC
Q 046296 70 GSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PGD----GNILSLYADLIWQAHK 139 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~---P~~----~~al~~lA~~l~~~~g 139 (167)
++.+++++++..+...|.+ +..+..++.+|+....+++.|..++++|..+. |+. .++...++.++.....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 6889999999999988875 34566678887778899999999999998775 443 3556678888877445
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 140 DASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
.+..|...+++||++..+.|+..-++
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckl 129 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKL 129 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHH
Confidence 88899999999999999888655444
No 275
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.16 Score=44.67 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD---ASRA 144 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~---~~eA 144 (167)
-+++-+.+.+.+|+.+|+...+|+-...+|. ... ++..-++++++++++||.|..+|...=.+.-..+.. ..+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 4667788899999999999999999998886 332 378999999999999999998887654444432233 5677
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 046296 145 ESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~~l 162 (167)
+++..++|.-++.|-.++
T Consensus 169 l~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAW 186 (421)
T ss_pred HHHHHHHHhccchhhhHH
Confidence 889999999998886655
No 276
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.46 E-value=0.069 Score=43.11 Aligned_cols=56 Identities=23% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
|+.+|.+|+.+.|.+...++.+|.+... .++.-.|+-+|-+++...-..+.+..|+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL 56 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENL 56 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7889999999999999999999999999 9999999999999987654456665554
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.41 E-value=0.22 Score=43.08 Aligned_cols=79 Identities=24% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHH
Q 046296 80 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------NP------------GD---GNILSLY 130 (167)
Q Consensus 80 kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------------~P------------~~---~~al~~l 130 (167)
..|+.+|-+...+..++.++. .+++.+.|.++++|||-. ++ .| ..+++.+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 445678999999999999987 899999999999998632 11 12 2344556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 046296 131 ADLIWQAHKDASRAESYFDQAVKSAPD-DWL 160 (167)
Q Consensus 131 A~~l~~~~g~~~eA~~~~e~Al~l~P~-~~~ 160 (167)
...+.+ +|-+..|.++.+-.+.++|. ||.
T Consensus 110 i~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 110 IQSLGR-RGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHHh-cCcHHHHHHHHHHHHhcCCCCCcc
Confidence 667777 99999999999999999998 774
No 278
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.40 E-value=0.35 Score=39.54 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---H
Q 046296 70 GSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILANPGDGNILSLYADLIWQ---A 137 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~g--------d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~ 137 (167)
+..+|..+|++|.+..-.. ..+.+.++.++. .+ +..+|+.+|.+|-... ++.+..+++.+|.. +
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 6777777777777764333 233555555543 22 2346777777776654 66666777766644 1
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 046296 138 HKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P 156 (167)
..++.+|..+|++|.+...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2367777777777777655
No 279
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.38 E-value=0.055 Score=28.97 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARF 98 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~ 98 (167)
++++|...|+++++..|.++.+|..++.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45667777777777777777777766654
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.38 E-value=0.057 Score=47.17 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=71.8
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPG----N------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PGDGNIL 127 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~----n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~------P~~~~al 127 (167)
+|-+..|+++|.-+..+|+++-.+ + ..+++.++..|. ..|.+-.|.++++.|.++. |-.+..+
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 455668999999999999987433 2 345667777776 7899999999999998774 3445666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 128 SLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
.-+|.+|.. .++.+.|..-|++|....
T Consensus 250 ~~~aDIyR~-~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 250 LCFADIYRS-RGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence 678999999 999999999999998763
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.33 E-value=0.25 Score=44.27 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=43.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
.+|+|.++.-+..-..+++| ++.++..+|.+++. ..+|+||..++...
T Consensus 474 sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKL 521 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence 56899999999999999999 99999999999999 99999999988754
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.27 E-value=0.23 Score=45.21 Aligned_cols=83 Identities=14% Similarity=0.010 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDASRA 144 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~--gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~~eA 144 (167)
+...|+.+|.++-+... +.+.+.++.++.... .++.+|.++|.+|.+. .+..+.+.++.++.. +.-+..+|
T Consensus 308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 78899999999988755 555556676654222 4678999999999764 788888899988875 23488899
Q ss_pred HHHHHHHHHhCC
Q 046296 145 ESYFDQAVKSAP 156 (167)
Q Consensus 145 ~~~~e~Al~l~P 156 (167)
..+|++|.+..+
T Consensus 384 ~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 384 FAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHccC
Confidence 999999999873
No 283
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.26 E-value=0.014 Score=49.85 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~ 133 (167)
+-+.+-...|-++++.+|.|.+.|..-+.+-+....+++.+...|.++|+.||++|.+|..+-.+
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 45667778899999999999999987454444468899999999999999999999999876543
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.04 E-value=0.66 Score=38.31 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=65.4
Q ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q 046296 66 NNNHGSSSTDAYNEKMIEAN-PGNALL-------LGNYARFLKEVRG-DFAKAEELCGRAILA----NP---GD------ 123 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~-P~n~~~-------l~~lA~~l~~~~g-d~e~A~~~~~rAl~l----~P---~~------ 123 (167)
-++++++.|..+|.|+-... ..+|.. +++.+.-+. ..+ +++.|..++++|+++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35689999999999987765 444443 445555554 577 999999999999888 22 21
Q ss_pred -HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 046296 124 -GNILSLYADLIWQAHKDAS---RAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 124 -~~al~~lA~~l~~~~g~~~---eA~~~~e~Al~l~P~~~~~l 162 (167)
..++..++.++.. .+.++ +|+.+++.+-...|+.+.+.
T Consensus 83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 3455667777777 65544 67777777777777766443
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.12 Score=42.76 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=41.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILANPGDGN------ILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~------al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+..+.++|+.++++||++-.+-.. .+..+|.+|-....++++|+.+|++|-..
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999998654333 33467887766458999999999999765
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.96 E-value=0.22 Score=43.11 Aligned_cols=94 Identities=7% Similarity=0.012 Sum_probs=71.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-----DGNILSLYADLIWQA 137 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-----~~~al~~lA~~l~~~ 137 (167)
...++|-+.-|.++.+-.+.+||. ||.....+-.++..+.++++--+..++........ -|...+..|.+++.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~- 190 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR- 190 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-
Confidence 344678899999999999999999 88877666666666778888777777776552221 23566777888888
Q ss_pred cCCH---------------HHHHHHHHHHHHhCCCC
Q 046296 138 HKDA---------------SRAESYFDQAVKSAPDD 158 (167)
Q Consensus 138 ~g~~---------------~eA~~~~e~Al~l~P~~ 158 (167)
.++. ++|...+++||..-|.-
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 7776 89999999999987754
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.83 E-value=0.16 Score=38.48 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIE-ANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133 (167)
Q Consensus 69 g~~d~A~~~~~kAL~-l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~ 133 (167)
.+..+.+.+++..++ -.|. ..+.++.+|.-++ +.++|++++.+++..++.+|+|.++....-.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 567789999999997 5554 3566777777776 79999999999999999999999987655433
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.83 E-value=0.47 Score=39.34 Aligned_cols=93 Identities=10% Similarity=-0.030 Sum_probs=67.7
Q ss_pred hhcCCChHHHHHHHHHHHHhCCC-C---------------------------------HHHHHHHHHHHHHHc------C
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPG-N---------------------------------ALLLGNYARFLKEVR------G 104 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~-n---------------------------------~~~l~~lA~~l~~~~------g 104 (167)
.-.+++..+|+..+++.++..+. . +.++..+|.+.. .. .
T Consensus 194 lw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~ 272 (352)
T PF02259_consen 194 LWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSE 272 (352)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccc
Confidence 33557788999999888882111 0 234455565554 45 7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------------C-HHHHHHHHHHHHHhCCCC
Q 046296 105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHK---------------D-ASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g---------------~-~~eA~~~~e~Al~l~P~~ 158 (167)
+.++++..|++|+.++|+...+++.+|..+..... + ...|+..|-+++...|..
T Consensus 273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 88999999999999999999999999987765211 1 125999999999999884
No 289
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.82 E-value=0.12 Score=29.93 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 046296 126 ILSLYADLIWQAHKDASRAESY--FDQAVKSAPD 157 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~--~e~Al~l~P~ 157 (167)
.++.+|..+.. ++++++|+.+ |+-+..++|.
T Consensus 3 ~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence 34455555555 6666666666 3355555554
No 290
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.78 E-value=0.11 Score=27.77 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296 104 GDFAKAEELCGRAILANPGDGNILSLYADLI 134 (167)
Q Consensus 104 gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l 134 (167)
+++++|...|++++...|.++.+|..++.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3567788888888888888888887776543
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.74 E-value=0.0049 Score=52.88 Aligned_cols=57 Identities=28% Similarity=0.267 Sum_probs=54.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
..|.+++|+++|.+||+++|..+..+...+.++++ +++...|+.-+..|+.++|+..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccc
Confidence 47889999999999999999999999999999999 9999999999999999999864
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.69 E-value=0.45 Score=43.53 Aligned_cols=93 Identities=16% Similarity=0.042 Sum_probs=79.6
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
.+.++++.....|++++---....++|..|+..+. ..++..-|...+.++.++. |..+.++...|.+--. .++++.|
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~-~~n~~~A 385 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES-NGNFDDA 385 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-hccHHHH
Confidence 45689999999999999999999999999999886 7899999998888888775 6777777777777666 8999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 046296 145 ESYFDQAVKSAPDDWL 160 (167)
Q Consensus 145 ~~~~e~Al~l~P~~~~ 160 (167)
..++++...--|+...
T Consensus 386 ~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 386 KVILQRIESEYPGLVE 401 (577)
T ss_pred HHHHHHHHhhCCchhh
Confidence 9999999988787654
No 293
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.68 E-value=1.1 Score=33.44 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH-
Q 046296 68 NHGSSSTDAYNEKMIEANPGN------------ALLLGNYARFLKEVRGDFAKAEELCGRAI-------LANPGDGNIL- 127 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n------------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl-------~l~P~~~~al- 127 (167)
.+-+++|...+++|++....- +..+..|+..+. ..++|++++...++|| +++.+....|
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 367999999999999885442 345556666665 6899988877776666 4566655444
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 128 ---SLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 128 ---~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
++.+..+.. .|+.++|+..|+.+.+.
T Consensus 101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 467778888 99999999999998763
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.32 Score=40.81 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFA-KAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e-~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
.++.+-+.++.++++-+|+|..+|...-.++. ..+++. .-++.+++.|..+.+|..+|...-+++.. .+.++.-+++
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive-~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y 169 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE-LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHH
Confidence 45778889999999999999999987766664 778887 88899999999999999999999999888 8889999999
Q ss_pred HHHHHHhCCCCHHHH
Q 046296 148 FDQAVKSAPDDWLNL 162 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l 162 (167)
..+.|+.+-.|..++
T Consensus 170 ~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 170 ADELLEEDIRNNSAW 184 (318)
T ss_pred HHHHHHHhhhccchh
Confidence 999999887665554
No 295
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.16 Score=42.29 Aligned_cols=60 Identities=18% Similarity=0.028 Sum_probs=55.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
...+++.|..+.++.+.++|.++.-+.--|.+|.+ .+.+.-|++-++..++.-|+++.+.
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence 67899999999999999999999999999999999 9999999999999999999988653
No 296
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.25 Score=41.22 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=61.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI 134 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l 134 (167)
.|....+++.|..+-++.|.++|++|.-+..-|.++. +.+.+.-|++-++..++.-|+++.+......+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5667788999999999999999999999999898886 899999999999999999999998876655443
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.41 E-value=0.056 Score=28.66 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 125 NILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
.++..+|.+++. +|++++|+..++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHh
Confidence 355667777777 777777777665
No 298
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.36 E-value=0.18 Score=45.57 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=61.5
Q ss_pred hhhcCCChHHHHHHHHHHHH-h-----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIE-A-----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~-l-----------------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
++++.+.+..+..+|++||+ . ....-++++|.+..+. ..++.-.|.++|.+|+..-..+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcH
Confidence 56777899999999999996 1 1223577889997765 899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 046296 126 ILSLYADLIWQ 136 (167)
Q Consensus 126 al~~lA~~l~~ 136 (167)
.|..+|.+++.
T Consensus 371 lWLRlAEcCim 381 (696)
T KOG2471|consen 371 LWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 299
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.29 E-value=0.051 Score=50.00 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~--~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
|+.-+|..++..++-..|... .++..+|.+|. +.|...+|--++..|+...|.-..-++.++.++.+ .+++.....
T Consensus 227 G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~-RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~S~~ 304 (886)
T KOG4507|consen 227 GEPYQAVECAMRALHFSSRHNKDIALLSLATVLH-RAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNHSVL 304 (886)
T ss_pred CChhhhhHHHHHHhhhCCcccccchhhhHHHHHH-HcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhhhhh
Confidence 444444444444444433322 23333444443 34444444444444444444333334444444444 444444444
Q ss_pred HHHHHHHhCC
Q 046296 147 YFDQAVKSAP 156 (167)
Q Consensus 147 ~~e~Al~l~P 156 (167)
.|..|.+..|
T Consensus 305 ~ydha~k~~p 314 (886)
T KOG4507|consen 305 CYDHALQARP 314 (886)
T ss_pred hhhhhhccCc
Confidence 5555544444
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.21 E-value=0.36 Score=46.25 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=66.1
Q ss_pred hhcCCChHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Q 046296 65 SNNNHGSSSTDAYNEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI------- 117 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kA----------L~l~P~----------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl------- 117 (167)
...+.+.+.|+.+|+|+ |.-+|. ++..|..++.++. ..|+++.|+.+|+.|-
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~Vr 946 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVR 946 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhhee
Confidence 34557788888888864 334443 4556677788774 8999999999998753
Q ss_pred --------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 118 --------------LANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 118 --------------~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.....|-.+.+.+|..|-. .+++.+|+..|.+|-..
T Consensus 947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred eEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 3345677888899999988 99999999998887543
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.18 E-value=0.84 Score=37.25 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK------- 139 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g------- 139 (167)
+..+|...|+++.... ++.+.++++.++.. ...++.+|..+|++|.+... ...++.++ +++. .+
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~ 243 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAA 243 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhh
Confidence 4468999999998876 78888888877642 13489999999999999877 88888888 5555 45
Q ss_pred --------CHHHHHHHHHHHHHhCCCCH
Q 046296 140 --------DASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 140 --------~~~eA~~~~e~Al~l~P~~~ 159 (167)
+...|..++.++....+...
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 88899999999988766543
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.15 E-value=0.31 Score=44.31 Aligned_cols=83 Identities=22% Similarity=0.182 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIE-------ANPGNALLLGNYARFLKEVR----G-DFAKAEELCGRAILANPGDGNILSLYADLIW 135 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~-------l~P~n~~~l~~lA~~l~~~~----g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~ 135 (167)
..++++|+.+|+++.+ .. ++.+.+.++.++. .. . +++.|+.+|.+|.+. .++.+.+.+|.++.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~-~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYL-QGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHh-cCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 4689999999999988 33 5667788888775 32 2 789999999999876 45556678888877
Q ss_pred HHc--CCHHHHHHHHHHHHHhC
Q 046296 136 QAH--KDASRAESYFDQAVKSA 155 (167)
Q Consensus 136 ~~~--g~~~eA~~~~e~Al~l~ 155 (167)
.-. .++.+|..+|..|.+..
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC
Confidence 612 35679999999998764
No 303
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.33 Score=44.49 Aligned_cols=93 Identities=16% Similarity=-0.116 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~l--A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
.-.-++..+..-+.++|.++.++... ...+. ..++...+...++.++..||.+..+..+|+.++......+.-+...
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34446777777788999999886543 43333 5677888999999999999999999999999888733444455555
Q ss_pred HHHHHHhCCCCHHHHH
Q 046296 148 FDQAVKSAPDDWLNLI 163 (167)
Q Consensus 148 ~e~Al~l~P~~~~~l~ 163 (167)
.+.+.+..|++..++.
T Consensus 125 ~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 125 SEIAEWLSPDNAEFLG 140 (620)
T ss_pred HHHHHhcCcchHHHHh
Confidence 5559999999987663
No 304
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.43 Score=44.40 Aligned_cols=88 Identities=7% Similarity=-0.066 Sum_probs=65.6
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~ 138 (167)
.++..+|..+++.|+..++.-|.+. ....+++.++. ...++++|.++++.|-+.+|.++-.....-.+... .
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-E 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-h
Confidence 3455788889999999988877653 33445665554 67889999999999999999888776666555555 6
Q ss_pred CCHHHHHHHHHHHHHh
Q 046296 139 KDASRAESYFDQAVKS 154 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l 154 (167)
+.-++|++.+.....+
T Consensus 442 ~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSS 457 (872)
T ss_pred cchHHHHHHHHHHHhh
Confidence 8888888888776554
No 305
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.13 E-value=0.97 Score=40.04 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
|...|...-.+++++.|+...+-..-+.+|+. .++..++-.+++.+.+..|+-
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCCh
Confidence 34445555555666777777776677777777 888888888888888887753
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.08 E-value=0.22 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEEL--CGRAILANPGD 123 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~--~~rAl~l~P~~ 123 (167)
++.+..+|..++ .++++++|+.. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 356778888887 79999999999 55888888865
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.92 E-value=0.5 Score=39.67 Aligned_cols=80 Identities=18% Similarity=0.013 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
+..=+...+++++. ....++..++..+. ..++++.+++.+++.+.++|.+-..|..+-.++.. .|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence 44444444444432 23445556666664 67899999999999999999999999999889998 9999999999998
Q ss_pred HHHh
Q 046296 151 AVKS 154 (167)
Q Consensus 151 Al~l 154 (167)
.-++
T Consensus 213 l~~~ 216 (280)
T COG3629 213 LKKT 216 (280)
T ss_pred HHHH
Confidence 8763
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.76 E-value=0.54 Score=36.54 Aligned_cols=91 Identities=12% Similarity=-0.013 Sum_probs=62.1
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNIL----SLYADL 133 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al----~~lA~~ 133 (167)
..|.+.|++++|+++|.++.+..... ...++++..+.. ..+++.....++.+|-.+- +.+.... ..-|..
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 46778899999999999987765443 233444555444 5789999998888886553 3333333 234555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 046296 134 IWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 134 l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
++. +++|.+|.+.|-.++.-.
T Consensus 123 ~l~-~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 123 NLA-QRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHH-hchHHHHHHHHHccCcCC
Confidence 666 899999999888776543
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.70 E-value=0.85 Score=40.40 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKA-EELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A-~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
.++++.++..++-.+++.+.+.+|. |.++..|-. . ..++.... ++-.++...+.|+|.+.....+..-+. .++|
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~--a-r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e~ 345 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR--A-RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGEF 345 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH--h-cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccch
Confidence 3566777777777777777777775 443333221 1 34443222 233444556678888888888887777 8888
Q ss_pred HHHHHHHHHHHHhCCCCHHH
Q 046296 142 SRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 142 ~eA~~~~e~Al~l~P~~~~~ 161 (167)
..|..--+.++...|....+
T Consensus 346 ~~ARa~Aeaa~r~~pres~~ 365 (531)
T COG3898 346 SAARAKAEAAAREAPRESAY 365 (531)
T ss_pred HHHHHHHHHHhhhCchhhHH
Confidence 88888888888888865543
No 310
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.49 E-value=0.52 Score=32.54 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=42.2
Q ss_pred hcCCChHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 66 NNNHGSSSTDAYNEKMIEANPG----N-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~----n-----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P 121 (167)
.+.+++..|+..+.+.+..... . ..++.++|.+.. ..|++++|+..+++||++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 3457899997777777665332 2 456778888776 78999999999999998864
No 311
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.43 E-value=0.51 Score=45.71 Aligned_cols=95 Identities=14% Similarity=-0.060 Sum_probs=75.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVR---G---DFAKAEELCGRAILANPGDGNILSLYADLI 134 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~---g---d~e~A~~~~~rAl~l~P~~~~al~~lA~~l 134 (167)
++.....|++|+..|++.-..-|.- .++.+..+.++.++. + .+++|+..|++.. -.|.-|--+.-.|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 5566678999999999999999874 567777777765322 2 4777887777764 3566676677788999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 135 WQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 135 ~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
.. +++|+|-++.|+-|++.-|+.|.
T Consensus 563 ~~-~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 563 QR-LGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HH-hhhHHHHHHHHHHHHHhcCCCCc
Confidence 99 99999999999999999998874
No 312
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.071 Score=46.02 Aligned_cols=98 Identities=12% Similarity=-0.091 Sum_probs=76.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANP---G----------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG 124 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P---~----------------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~ 124 (167)
-.+++++++.|..-|.++++.-. . -.....+++.+.. ..+.+..|+.....+++.++...
T Consensus 231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~t 309 (372)
T KOG0546|consen 231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKT 309 (372)
T ss_pred hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhC
Confidence 45567788888888888776411 1 0122344555543 57788889988888999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
.+++..+..+.. ..++++|++.++.+....|++..+..
T Consensus 310 ka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 310 KAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cHHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHH
Confidence 999999999998 99999999999999999999987653
No 313
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=1.2 Score=41.09 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=67.4
Q ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC
Q 046296 66 NNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rA-----l~l~P~~~~al~~lA~~l~~~~g 139 (167)
.+++-+.-|.++++-.+.++|. ||.+...+-.++.....+|+=-+..++.. |..-|+-+..+ .+|.++.. +.
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~-~~ 430 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLR-KN 430 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHh-cC
Confidence 4568899999999999999999 99988877777666677787777766665 44456666543 45556665 33
Q ss_pred C---HHHHHHHHHHHHHhCCC
Q 046296 140 D---ASRAESYFDQAVKSAPD 157 (167)
Q Consensus 140 ~---~~eA~~~~e~Al~l~P~ 157 (167)
. .+.|...+.+|++..|.
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCcH
Confidence 3 56799999999999884
No 314
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=93.30 E-value=0.67 Score=35.97 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 106 FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 106 ~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
.+..++..++.++..| ++.++.+++.++.. .|+.++|.+..+++..+-|.+...
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~~~~ 180 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPADEFA 180 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcHHHH
Confidence 4566677788888888 67788899999999 999999999999999999965443
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.09 E-value=0.98 Score=34.61 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=54.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
...++++++.++...-.+.|+.+++...-++++.. .+++.+|+.+|+....-.|..|+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHH
Confidence 47889999999999999999999999999999999 9999999999999999888877543
No 316
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=1.4 Score=37.30 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=44.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
..+++.+|...|..++..+|.+..+...|+.++.. .|+.++|...+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~ 193 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAA 193 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHh
Confidence 58999999999999999999999999999999999 9999888776654
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.59 E-value=1.4 Score=36.17 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=51.6
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
.+.+.+++|+...+.-++.+|.+......|-.+|. ..|++++|..-++-+-++.|++..
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccch
Confidence 45578999999999999999999988888888887 799999999999999999998753
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.55 E-value=1.3 Score=40.60 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCC
Q 046296 71 SSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNI----LSLYADLIWQAHKD 140 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~a----l~~lA~~l~~~~g~ 140 (167)
...|+.+++-+++..+-. +.+.+.||.+|.+...+++.|+.+++|++.+.. +..+. ...++.++.+ .+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCH
Confidence 456788888888532222 456778999998889999999999999988874 33322 3345666666 555
Q ss_pred HHHHHHHHHHHHHhCCC
Q 046296 141 ASRAESYFDQAVKSAPD 157 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~ 157 (167)
.. |..+++++|+..-+
T Consensus 116 ~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSET 131 (608)
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 55 99999999887444
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.34 E-value=0.62 Score=44.73 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRA----------ILANP----------GDGNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rA----------l~l~P----------~~~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
..+++||..|. .++|.+.|+++|+|+ |.-+| .++..|...|..+-. .|+.+.|+.+|.
T Consensus 859 ~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHH
Confidence 45778898885 799999999999985 33345 344555556666666 899999999998
Q ss_pred HHHH
Q 046296 150 QAVK 153 (167)
Q Consensus 150 ~Al~ 153 (167)
.|-.
T Consensus 937 ~A~D 940 (1416)
T KOG3617|consen 937 SAKD 940 (1416)
T ss_pred Hhhh
Confidence 8743
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=1.6 Score=38.50 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKE-----------VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~-----------~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g 139 (167)
.+.++..=.+.++.+|....+|+--=.++.+ ...-+++-+.+...+|+.+|++..+|+...+++.. ..
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p 123 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NP 123 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CC
Confidence 4567778888899999998888753333221 11235667788999999999999999999999987 54
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHH
Q 046296 140 --DASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 140 --~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
++..=+++.+++++++|.|...+
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccch
Confidence 36788999999999999886544
No 321
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.6 Score=39.01 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=55.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS 128 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~ 128 (167)
+-+...+++-+++.....+|..+|.|..+++..|.... ..=+.++|.+-|.++|+++|.-+.+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 44566688999999999999999999999999998775 566889999999999999997665543
No 322
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.43 E-value=2.3 Score=39.01 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
...|...|.+|=+.--.--.++..-|.+-+..++|.+-|...|+--++.-++++..-..|...|.. .++-..|..+|++
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCcchhHHHHHHH
Confidence 445555565554332221123222232222246777777777777777777777777777777777 7777777778887
Q ss_pred HHHh
Q 046296 151 AVKS 154 (167)
Q Consensus 151 Al~l 154 (167)
++..
T Consensus 461 ~l~s 464 (656)
T KOG1914|consen 461 VLTS 464 (656)
T ss_pred HHhc
Confidence 7776
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.30 E-value=0.41 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 125 NILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+++..+|.+-+. ..+|++|++-|+++|++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 467788888888 88999999999988876
No 324
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.28 E-value=0.19 Score=43.41 Aligned_cols=19 Identities=47% Similarity=0.826 Sum_probs=8.5
Q ss_pred cccCCCCcccCCCCCCCCC
Q 046296 31 GLGNNGGKICGGRGGGDVG 49 (167)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~ 49 (167)
|+.+|+|+-.||+|+|.|+
T Consensus 357 g~Rgg~Gg~~gGrGgGRGg 375 (465)
T KOG3973|consen 357 GSRGGSGGNWGGRGGGRGG 375 (465)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 3333334444555554443
No 325
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=91.17 E-value=1.7 Score=31.88 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Q 046296 71 SSSTDAYNEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~---------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g 139 (167)
...-...++++++.-.+++. +|..+| .-...+.+.|+...... -..+..+..+|.++.. .+
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-------~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~ 113 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-------DLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RG 113 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-------TTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-------HHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cC
Confidence 33445667777766544332 222222 22337788888777654 5788999999999998 99
Q ss_pred CHHHHHHHHHHHH
Q 046296 140 DASRAESYFDQAV 152 (167)
Q Consensus 140 ~~~eA~~~~e~Al 152 (167)
++++|.++|+++|
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999886
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.16 E-value=0.31 Score=25.69 Aligned_cols=26 Identities=35% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGR 115 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~r 115 (167)
|.+..+++.++. ..|++++|+..+++
T Consensus 1 ~~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 356778899887 89999999998864
No 327
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.76 E-value=1.1 Score=36.48 Aligned_cols=48 Identities=27% Similarity=0.268 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 71 ~d~A~~~~~kAL~l-----~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~ 118 (167)
.++|...|++|+++ .|.||.- ..|++.|+++..++.++|+++.++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35677777776653 6667653 346677777667777777777766654
No 328
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.58 E-value=1.9 Score=37.61 Aligned_cols=82 Identities=20% Similarity=0.063 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CC----HH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------GD----GN 125 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---------------------~~----~~ 125 (167)
..+-++.-..||++||.-+.++..+|. +..--+.+|++++++|++.-. .| ..
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 344466677899999998888877764 344557888888888886411 11 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
+...+|.+..+ +|+..||++.|+...+--|
T Consensus 277 IKRRLAMCARk-lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARK-LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence 33467888887 9999999999999988777
No 329
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.52 E-value=1.3 Score=36.45 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 71 ~d~A~~~~~kAL~l-----~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~ 118 (167)
.++|...|++|+++ .|.||.- ..|++.|+++..++.++|.++.++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888887763 4777754 356777777778888888877666654
No 330
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=3 Score=34.86 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEAN-----PGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYADLIWQ 136 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~-----P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~l~~ 136 (167)
..+.++..+|++|..+. |+-+ .++-.-|.++ ..-++++|+.+|++++.+--.+ .+.+...+.+|.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l--env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL--ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 45667777888877763 3322 2233334443 3678999999999988764433 2444456777887
Q ss_pred HcCCHHHHHHHHHHHHH
Q 046296 137 AHKDASRAESYFDQAVK 153 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~ 153 (167)
..+|++|-..|.+-..
T Consensus 163 -l~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 163 -LEKFTEAATAFLKEGV 178 (308)
T ss_pred -hHHhhHHHHHHHHhhh
Confidence 8888888777776543
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.20 E-value=2.1 Score=33.23 Aligned_cols=64 Identities=19% Similarity=0.096 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
..++..+|.++. ..||+++|+++|.++.+..... .+.+.++-.+.+. .+++....+++.+|-.+
T Consensus 36 r~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 357778999887 8999999999999988764332 3444455556666 89999999999999765
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.08 E-value=3.9 Score=32.83 Aligned_cols=54 Identities=22% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 95 YARFLKEVRGDFAKAEELCGRAILANPGDG----NILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 95 lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----~al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
+|.... ..+++++|+..++.++.. |.|. -+-.++|.+++. ++.+++|+..+...
T Consensus 95 lAk~~v-e~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~ 152 (207)
T COG2976 95 LAKAEV-EANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQ-QKKADAALKTLDTI 152 (207)
T ss_pred HHHHHH-hhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcc
Confidence 444444 578999999999999864 4333 344578999999 99999999988654
No 333
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.94 E-value=2 Score=31.22 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH---HcCCH-------HHHHHHHHHHHHhCCCCHHHH
Q 046296 96 ARFLKEVRGDFAKAEELCGRAILANPGDGN---ILSLYADLIWQ---AHKDA-------SRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~---al~~lA~~l~~---~~g~~-------~eA~~~~e~Al~l~P~~~~~l 162 (167)
|.-++ .+|+.-+|+++.+..+..++++.. .+..-|.+++. +..+. -.|++.|.+++.+.|+.+..+
T Consensus 3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 34454 699999999999999999998874 34444555544 12222 258899999999999886655
Q ss_pred H
Q 046296 163 I 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 82 ~ 82 (111)
T PF04781_consen 82 F 82 (111)
T ss_pred H
Confidence 3
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.93 E-value=2.3 Score=35.70 Aligned_cols=55 Identities=13% Similarity=-0.025 Sum_probs=47.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
.+...++++.++..+++.+..+|-+-..|..+-.++. ..++...|+..|++.-..
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 3455678999999999999999999999998888876 899999999999988664
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.91 E-value=1.4 Score=36.29 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=53.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
....+.+|+...+.-|+.+|.+......|-.+|.- .|++++|...++-+-++.|++.
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccc
Confidence 47889999999999999999999999999999988 9999999999999999999875
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=1.3 Score=41.34 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 96 ARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
|.-++ ...+|..++++|+..++--|.| +....+++.+|.. ..+.++|.+++++|-+.+|.++.
T Consensus 361 A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 361 AKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHH
Confidence 44454 6889999999999999887755 4455678889998 99999999999999999998874
No 337
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.87 E-value=1.8 Score=39.11 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
..++.-|+-+|+|...|+.|-..+. .++.+++-.+.|++...--|--+.+|..+-.--+. ..+|..-+.+|-+.|...
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhh
Confidence 3678889999999999999998875 89999999999999998888877777765444444 578888888888888754
Q ss_pred C
Q 046296 156 P 156 (167)
Q Consensus 156 P 156 (167)
-
T Consensus 107 l 107 (660)
T COG5107 107 L 107 (660)
T ss_pred c
Confidence 3
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.87 E-value=1.9 Score=29.50 Aligned_cols=52 Identities=6% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSL---YADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~---lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
...+.++|+..+++|++..++.+.-+.. +..++.+ .|+|.+++.+-.+-+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666544443 3445566 77777776665555444
No 339
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.73 E-value=0.78 Score=31.00 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.6
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILA 119 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l 119 (167)
..+++++|+.+|..||+.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 678999999999999874
No 340
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.59 E-value=3.7 Score=37.71 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF 148 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~ 148 (167)
.+.+.+...|...|...|.---+|-.+|..-+ ..+..+++++.|+++|..-|.+...|..|-..+....++.+.-...|
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34567777888888888988888888888765 78999999999999999999999999888776666567888888888
Q ss_pred HHHHHhCCC
Q 046296 149 DQAVKSAPD 157 (167)
Q Consensus 149 e~Al~l~P~ 157 (167)
++|+...-.
T Consensus 138 e~A~~~vG~ 146 (577)
T KOG1258|consen 138 ERAKSYVGL 146 (577)
T ss_pred HHHHHhccc
Confidence 888876543
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.58 E-value=2.2 Score=29.24 Aligned_cols=52 Identities=6% Similarity=-0.030 Sum_probs=39.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHh
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYA---RFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA---~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
.+++.++|+..++++|+.-++.+.-+..++ .++. ..|+|.+++++..+-+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999876555444 4454 678888888876665554
No 342
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.44 E-value=2 Score=39.54 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=60.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~ 145 (167)
.++..++.+....+.-+.-....+..++.-|.++. ..+..++|-++|++.+..+|+ +.++.+|.-+.. .|-...|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 94 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQ 94 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHH
Confidence 34456677777666665555556666677777776 578889999999999999999 566788888888 88888888
Q ss_pred HHHH
Q 046296 146 SYFD 149 (167)
Q Consensus 146 ~~~e 149 (167)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 8777
No 343
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=89.35 E-value=0.91 Score=27.31 Aligned_cols=32 Identities=44% Similarity=0.533 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296 112 LCGRAILANPGDGNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 112 ~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA 144 (167)
.|.+||..+|++...+..||..|.+ +|+.++|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 4566777777777777777777777 7777554
No 344
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=2.4 Score=36.70 Aligned_cols=70 Identities=10% Similarity=-0.057 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
..+-.-++.++ ...+|..|+.+|.+.|+..-. ++..|.|.|.+.+. .++|..|+.-..+|++++|.+.-+
T Consensus 82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhh
Confidence 33444566676 688999999999999998644 34566788888888 999999999999999999988643
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.04 E-value=0.79 Score=39.06 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 96 ARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAV 152 (167)
Q Consensus 96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al 152 (167)
+..+. ..+.+.+|++++++++.++|-+...+..+-.+|.. .|+--.|++.|++.-
T Consensus 286 a~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA 340 (361)
T ss_pred HHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence 44443 68999999999999999999999999888888888 899778877777653
No 346
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.71 E-value=1 Score=30.47 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 046296 101 EVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~l 119 (167)
...+++++|+.+|..||+.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3789999999999998864
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.52 E-value=2.2 Score=36.49 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 128 SLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159 (167)
Q Consensus 128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~ 159 (167)
...+..+.+ .+.+.+|+++.+++++++|-+.
T Consensus 283 gkva~~yle-~g~~neAi~l~qr~ltldpL~e 313 (361)
T COG3947 283 GKVARAYLE-AGKPNEAIQLHQRALTLDPLSE 313 (361)
T ss_pred HHHHHHHHH-cCChHHHHHHHHHHhhcChhhh
Confidence 344556666 8888888888888888888554
No 348
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.40 E-value=3.9 Score=32.76 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-NILSLYADLIW 135 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~--n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~ 135 (167)
+.+|...|++|++.... . ..+++.+|.+.. ..|++++|+.+|.++|..--.+. ..+..+|.=++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w 211 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 55788888888876543 2 456666777665 89999999999999997533222 35555555443
No 349
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=88.36 E-value=1.1 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARF 98 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~ 98 (167)
++++|..+|++.+...|+ +..|..+|.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 456677777777777655 5666666653
No 350
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.85 E-value=3.6 Score=35.80 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKDASRAES 146 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~~~eA~~ 146 (167)
-++..-..+|.-...+.|. |.+-.|-+..+. +.--.+.++...+.+... -.....++...+.++.+ .|+.+||..
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla-~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ 386 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALA-MREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARA 386 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHH-HhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHH
Confidence 3566666777776667766 444445566665 344466777777666543 12344555667888998 999999999
Q ss_pred HHHHHHHhCCCCHH
Q 046296 147 YFDQAVKSAPDDWL 160 (167)
Q Consensus 147 ~~e~Al~l~P~~~~ 160 (167)
.|++||.+.++...
T Consensus 387 aydrAi~La~~~ae 400 (415)
T COG4941 387 AYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhcCChHH
Confidence 99999999887764
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.82 E-value=7 Score=37.67 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred cCCChHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPG--N-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-----NILSLYAD 132 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~--n-------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-----~al~~lA~ 132 (167)
++.++++|..+..++...-|. . +++..-.|.+.. .++++++|+++.+.++..-|.+. .++...+.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 457889998888887765444 2 122223344544 68999999999999999888653 45556777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 046296 133 LIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 133 ~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+..- +|++++|..+.+++.+.
T Consensus 506 a~~~-~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHI-RGELTQALALMQQAEQM 526 (894)
T ss_pred HHHH-hchHHHHHHHHHHHHHH
Confidence 7776 89999999999999887
No 352
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=87.24 E-value=1.5 Score=28.43 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.2
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 046296 101 EVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~ 118 (167)
+..+++++|+.+|.+|+.
T Consensus 16 D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 368888888888888775
No 353
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.77 E-value=7.1 Score=31.15 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Q 046296 69 HGSSSTDAYNEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAIL---------------------------- 118 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~--~~l~~lA~~l~~~~gd~e~A~~~~~rAl~---------------------------- 118 (167)
+..++|+..|...-+-.-.+. .+....+.++. ..++-..|+.+|..+-.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 556666666665554443332 33344454443 55666666655554322
Q ss_pred -----------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 119 -----------ANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 119 -----------l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
-+|-...+.-.|+..-++ .|++.+|.++|++...
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence 234445555667777887 9999999999998876
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.58 E-value=1.5 Score=26.51 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 128 SLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 128 ~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
..+|.+|++ +|+++.|...+++++.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 467777887 8888888888888874
No 355
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.49 E-value=6.1 Score=30.55 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
..+..++..++.++..| ++.++.+++.++. ..|+.++|....+++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence 45567778888888888 5788888888887 7999999999999999999933
No 356
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.31 E-value=13 Score=30.48 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=60.6
Q ss_pred cCC-ChHHHHHHHHHHHHh----CC---CCH-------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 046296 67 NNH-GSSSTDAYNEKMIEA----NP---GNA-------LLLGNYARFLKEVRGD---FAKAEELCGRAILANPGDGNILS 128 (167)
Q Consensus 67 ~~g-~~d~A~~~~~kAL~l----~P---~n~-------~~l~~lA~~l~~~~gd---~e~A~~~~~rAl~l~P~~~~al~ 128 (167)
+++ +++.|..++++|+++ .+ ..+ .++..++.++. ..+. .++|+.+++.+-.-.|+.+.++.
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l-~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYL-EWDTYESVEKALNALRLLESEYGNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 445 899999999999988 22 222 33455666554 3343 45666677777677788888775
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
..-.++.. ..+.+++.+.+.++|..-+
T Consensus 126 L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 126 LKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 55555555 7889999999999988644
No 357
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.90 E-value=3.5 Score=37.50 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=60.6
Q ss_pred hhhcCCChHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEAN---PGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN----ILSLYAD 132 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~---P~n~~----~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~----al~~lA~ 132 (167)
++.-.++++.|..++++|+-+- |+... +...++.++......+..|...+++||++....|. .++.++.
T Consensus 56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaq 135 (629)
T KOG2300|consen 56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQ 135 (629)
T ss_pred HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 3444578999999999998764 44432 33345555553344789999999999999988873 3445777
Q ss_pred HHHHHcCCHHHHHHHH
Q 046296 133 LIWQAHKDASRAESYF 148 (167)
Q Consensus 133 ~l~~~~g~~~eA~~~~ 148 (167)
+... ..++.-|.+.+
T Consensus 136 l~~i-dkD~~sA~elL 150 (629)
T KOG2300|consen 136 LHII-DKDFPSALELL 150 (629)
T ss_pred HHhh-hccchhHHHHH
Confidence 7776 88999888873
No 358
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.82 E-value=2 Score=28.98 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=12.9
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 046296 101 EVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~ 118 (167)
...+++++|+.+|.+||+
T Consensus 17 D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 17 DQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 367888887777777664
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.79 E-value=4 Score=36.60 Aligned_cols=86 Identities=14% Similarity=-0.076 Sum_probs=62.2
Q ss_pred hhhcCCChHHHHHHHHHHHHhC--------CCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEAN--------PGNAL----------LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~--------P~n~~----------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
.++++++|..|..-|+.||++- |..+. +-..+..++ ..+++.+-|+.+..|.|.+||..+.
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CY-L~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCY-LRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhh-hhcCCCchHHHHHhhhhhcCcchhh
Confidence 3567788888999999998873 22211 111233344 3688999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
-+..-|.+... ..+|.+|..-+.-|
T Consensus 264 nHLrqAavfR~-LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFRR-LERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 88888888877 88888876544433
No 360
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.58 E-value=11 Score=34.16 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=48.2
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRA 144 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA 144 (167)
..+++.-|-..|+-.+...|+.+.....+-.+|. ..++-..|.++|+++|..-... -.+|-.+-..-.. -|+...+
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi-~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~-~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI-RINDEENARALFETSVERLEKTQLKRIYDKMIEYESM-VGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh-hcchHHH
Confidence 3455666666666666666666666666665554 5666666666666666443322 2222222222222 4555555
Q ss_pred HHHHHHHHHhCCC
Q 046296 145 ESYFDQAVKSAPD 157 (167)
Q Consensus 145 ~~~~e~Al~l~P~ 157 (167)
..+=++-..+-|.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 5555555555554
No 361
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.55 E-value=4.5 Score=33.27 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 106 FAKAEELCGRAILA-----NPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 106 ~e~A~~~~~rAl~l-----~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
.++|...|+.|+++ .|.+|..+ .+++.++++.+++.++|.++.++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56889999999864 47887554 57788999988999998876666655
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.10 E-value=18 Score=33.24 Aligned_cols=93 Identities=19% Similarity=0.021 Sum_probs=60.6
Q ss_pred cCCChHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHH--HHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPG--NALL----LGNYARFLKEVRGDFAKAEELCGRAILANPG---D-GNILSLYA--DLI 134 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~--n~~~----l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~-~~al~~lA--~~l 134 (167)
.-.+++.|+.+++|++.+... ..+. .+-++.++. .. +...|...++++|+.--. . ....+.+- .++
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~-~~-~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF-KT-NPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hc-CHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 447899999999999888744 3322 233456664 34 444499999999987544 2 22222222 222
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 046296 135 WQAHKDASRAESYFDQAVKSA--PDDWLNL 162 (167)
Q Consensus 135 ~~~~g~~~eA~~~~e~Al~l~--P~~~~~l 162 (167)
+. .+++..|++.++....+. +.++.+.
T Consensus 150 ~~-~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 150 LQ-HKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred Hh-cccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 33 369999999999998876 4666544
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.84 E-value=2.6 Score=33.81 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=37.6
Q ss_pred hhcCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPG----NALLLGNYARFLKEVRGDFAKAE 110 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~----n~~~l~~lA~~l~~~~gd~e~A~ 110 (167)
|+.+.+.++|+.+|.++|++.+. ||+++..||.+++ ..++++.|-
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~-~~~~~e~AY 198 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ-KLKNYEQAY 198 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-Hhcchhhhh
Confidence 45567899999999999998654 5999999999887 788888773
No 364
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.67 E-value=12 Score=28.48 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=39.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~ 155 (167)
.+++-++-.+.+....+-+..+|.++..+|.+|-+ .|+..+|.+++.+|.+..
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEKG 150 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHhc
Confidence 57788888888888887778899999999999999 999999999999998753
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.57 E-value=7.8 Score=34.55 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-------HHHHHH---------h--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 92 LGNYARFLKEVRGDFAKAEEL-------CGRAIL---------A--NPGDGNILSLYADLIWQAHKDASRAESYFDQAV 152 (167)
Q Consensus 92 l~~lA~~l~~~~gd~e~A~~~-------~~rAl~---------l--~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al 152 (167)
....+.+|. .+|-++.|+.. |+-||+ + ..+++..|..+|.+.+. +|+++-|+++|+++-
T Consensus 298 ~~~i~~fL~-~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 298 GQSIARFLE-KKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred HHHHHHHHH-HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 444555664 66666666633 333333 2 34688899999999999 999999999998863
No 366
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.50 E-value=3.6 Score=37.07 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=53.4
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
.+.+++|++.++..+-.=..+++| +|.++..++.++. ...+|++|-.++...=- +.+--++....|.++..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~-e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLM-ENKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHH-HHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHH
Confidence 456788999999999999999999 8999999999997 68999999999876421 22222444445555544
No 367
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.48 E-value=1.6 Score=35.66 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=51.3
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHH----------HcCC-HHHHHHHHHHHHHh-----CCCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLG-NYARFLKE----------VRGD-FAKAEELCGRAILA-----NPGDGNI 126 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~-~lA~~l~~----------~~gd-~e~A~~~~~rAl~l-----~P~~~~a 126 (167)
|.+.-++++.|+.+.+.||+.+-.-|.-+. +++.++.+ ..+. ++.+ ++.....+ -|+...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHHH
Confidence 455668999999999999998643332211 22222211 1222 1111 11222222 2444444
Q ss_pred HHH--HHHHHHH--------HcCCHHHHHHHHHHHHHhCCC
Q 046296 127 LSL--YADLIWQ--------AHKDASRAESYFDQAVKSAPD 157 (167)
Q Consensus 127 l~~--lA~~l~~--------~~g~~~eA~~~~e~Al~l~P~ 157 (167)
... .|.+++. ..++..+|+.++++|++++|+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 443 4444421 145778999999999999996
No 368
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.43 E-value=6.4 Score=38.36 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ----AHKDASRAE 145 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~----~~g~~~eA~ 145 (167)
.+++|+..|++. .-.|.-|.=+...|.++. ..+++++-+++|.-|++.-|++|.+-...=.+.++ ...+...|.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888774 446777887888888886 89999999999999999999998765443333332 123445788
Q ss_pred HHHHHHHHhCCCCH
Q 046296 146 SYFDQAVKSAPDDW 159 (167)
Q Consensus 146 ~~~e~Al~l~P~~~ 159 (167)
..+.-|+...|...
T Consensus 612 ~~~~~~~~~~~~~~ 625 (932)
T PRK13184 612 VFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHhCcccc
Confidence 88888999989754
No 369
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=84.40 E-value=7.7 Score=32.55 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=62.6
Q ss_pred hhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARF---LKEVRGDFA---KAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~---l~~~~gd~e---~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
..+.++|++=.+.|.+..+...+ ..+..+..+.. +.......+ .-++.++.=++..|++..++..+|.++..
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 44567888888888888765443 12211211211 110011111 35567777788999999999988887665
Q ss_pred ---------------------HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 137 ---------------------AHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 137 ---------------------~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.+.-.+.|..++.+|+.++|....+.
T Consensus 90 ~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~ 136 (277)
T PF13226_consen 90 RAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAA 136 (277)
T ss_pred HHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 12356789999999999999877544
No 370
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.11 E-value=4.9 Score=30.30 Aligned_cols=53 Identities=26% Similarity=0.214 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS 142 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~ 142 (167)
.+......+.-.. ..+++.-|.+++..++..+|+|..+...++.+|.. ++...
T Consensus 69 G~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~-lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ-LGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH-
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HHHhc
Confidence 3444555566554 68999999999999999999999999999998877 55433
No 371
>PF12854 PPR_1: PPR repeat
Probab=83.60 E-value=3.5 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
..++..+-..+.+ .|+.++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 3445555566666 7777777776654
No 372
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.54 E-value=9.5 Score=30.73 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLK-----------------------EVRGDFAKAEELCGRAILANPGDGNI 126 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~-----------------------~~~gd~e~A~~~~~rAl~l~P~~~~a 126 (167)
+.++|++++.++..++-..+ -++|...+. ....|+++|.++-.+|-++ +++.+
T Consensus 127 d~~Ka~~y~traCdl~~~~a--Cf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~a 202 (248)
T KOG4014|consen 127 DSEKAERYMTRACDLEDGEA--CFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQA 202 (248)
T ss_pred CcHHHHHHHHHhccCCCchH--HHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHH
Confidence 47788888888877654433 333333221 1125678888888888766 56777
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Q 046296 127 LSLYADLIWQ---AHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 127 l~~lA~~l~~---~~g~~~eA~~~~e~Al~l~ 155 (167)
..++...+-. +-.+.++|+.|-.+|.++.
T Consensus 203 CAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 203 CANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred HhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 7777776644 2246788999988888763
No 373
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=83.28 E-value=2.9 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296 105 DFAKAEELCGRAILANPGDGNILSLYAD 132 (167)
Q Consensus 105 d~e~A~~~~~rAl~l~P~~~~al~~lA~ 132 (167)
.++.|..+|++.|...|+ +..|..+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 456777777777777655 455555543
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.94 E-value=10 Score=34.84 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 115 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~r 115 (167)
|++-.|-+....+|+..|.+|......+.+.. ..|+|+.|.+.+.-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s~ 348 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDISD 348 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhhc
Confidence 67778888899999999999988887887765 78988888776543
No 375
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.66 E-value=2.8 Score=34.10 Aligned_cols=49 Identities=22% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 106 FAKAEELCGRAIL-----ANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 106 ~e~A~~~~~rAl~-----l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.++|...|++|+. +.|.+|..+ .+++.++++..++.++|++..++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4778888888876 468887544 478888888789999998888887763
No 376
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.57 E-value=3.4 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=14.9
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 046296 101 EVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~l 119 (167)
...+++++|+.+|.+|++.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 17 DNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4688999998888887753
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.35 E-value=6.9 Score=32.17 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PGDGNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~------P~~~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
|.+.....++..++......-..-.++.++||+-. -.+|..+..+|..+++ .+++.+|+.+|-
T Consensus 46 ~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~-e~~~~~A~~Hfl 114 (260)
T PF04190_consen 46 PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK-EGNYYEAERHFL 114 (260)
T ss_dssp --SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 34444445555554421112223445555666543 1578999999999999 999999988874
No 378
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.92 E-value=3.7 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=13.3
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILA 119 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l 119 (167)
..++.++|+.+|+++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 20 EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 457788888888887764
No 379
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=2.4 Score=35.86 Aligned_cols=95 Identities=8% Similarity=0.094 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCC
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPGDGNILSLYADLI------WQAHKD 140 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~--gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l------~~~~g~ 140 (167)
.-++.-+.++..+++-+|++...|...-.+|. .. ..+..-....++.++.||.|...|...-.++ +. ..+
T Consensus 88 ~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le-~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~ 165 (328)
T COG5536 88 HLLDNELDFLDEALKDNPKNYQIWHHRQWMLE-LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSD 165 (328)
T ss_pred hhhhcHHHHHHHHHhcCCchhhhhHHHHHHHH-hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chh
Confidence 34566778899999999999999987666654 33 5678888899999999999988887655555 33 445
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296 141 ASRAESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 141 ~~eA~~~~e~Al~l~P~~~~~l~~y 165 (167)
+..-.++-..+|..+|.|+.++...
T Consensus 166 ~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 166 LKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHHHhHHHHHhhCCCChHHHHHH
Confidence 5555777788899999998887554
No 380
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=81.80 E-value=3.5 Score=27.59 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=14.9
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 046296 101 EVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~l 119 (167)
...+++++|+.+|..+|+.
T Consensus 17 D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 17 DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3678899988888888763
No 381
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=7.1 Score=35.65 Aligned_cols=82 Identities=22% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRAESYFD 149 (167)
Q Consensus 72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA~~~~e 149 (167)
+...+.+....++.|+++..+.+.+..+. ..++.+.|+..++..+...-.. .-.++.+++++.- +.+|.+|-.++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence 66777788888899999999999999987 6778999999999998722122 2233456777777 889999999998
Q ss_pred HHHHhC
Q 046296 150 QAVKSA 155 (167)
Q Consensus 150 ~Al~l~ 155 (167)
....++
T Consensus 328 ~L~des 333 (546)
T KOG3783|consen 328 LLRDES 333 (546)
T ss_pred HHHhhh
Confidence 887763
No 382
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.71 E-value=16 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=35.3
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG 114 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~ 114 (167)
.+.+.....+.+++.++..+|.++..++.+...+. .-+..+.+.+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 34567889999999999999988888888777654 335556666655
No 383
>PLN03138 Protein TOC75; Provisional
Probab=81.01 E-value=1.3 Score=42.27 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhCCCCH
Q 046296 108 KAEELCGRAILANPGDG 124 (167)
Q Consensus 108 ~A~~~~~rAl~l~P~~~ 124 (167)
..++.+.++|.+.|...
T Consensus 165 ~~e~~l~~~i~~kpG~v 181 (796)
T PLN03138 165 GTEDSFFEMVTLRPGGV 181 (796)
T ss_pred chHHHHHHHHhcCCCCc
Confidence 35566677777777643
No 384
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.88 E-value=3.8 Score=39.17 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCH---HHHHHHHHH---HHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----GDG---NILSLYADL---IWQ 136 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P-----~~~---~al~~lA~~---l~~ 136 (167)
.+..+.|+.+|++|.+..|.-..- .|+|.+|...-..++..+++-.-++.++. ... ..|...|.. -..
T Consensus 300 a~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL 378 (1226)
T KOG4279|consen 300 AESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL 378 (1226)
T ss_pred hhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh
Confidence 356788999999999999985443 35666665334456666666666666543 111 122222221 122
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 137 AHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
..+|.+|++.-++.+++.|-..+.
T Consensus 379 -And~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 379 -ANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred -ccCHHHHHHHHHHHhccCCceehH
Confidence 589999999999999999987653
No 385
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=80.56 E-value=13 Score=31.69 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
.+-+|+.+++.++..+|.|+.....+..+|.. .|-.+.|.+.|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence 36789999999999999999999999999998 99999999988654
No 386
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.94 E-value=4.9 Score=26.43 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=14.7
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 046296 101 EVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~l 119 (167)
+..+++++|+.+|.+|++.
T Consensus 19 d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 19 DEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3678899888888887753
No 387
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=4.8 Score=35.79 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=42.2
Q ss_pred HcCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 102 VRGDFAKAEELCGRAILAN--P--GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~--P--~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
.-+.|+.|..+..++.--+ . .-+..++.++.+-.. +.+|..|.++|-+|+...|++
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcch
Confidence 4566888888887776221 1 234556667777777 999999999999999999974
No 388
>PF13041 PPR_2: PPR repeat family
Probab=79.61 E-value=6.9 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=8.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAIL 118 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~ 118 (167)
+.+++++|.++|++..+
T Consensus 15 ~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 15 KAGKFEEALKLFKEMKK 31 (50)
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 34455555555554444
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.22 E-value=15 Score=29.72 Aligned_cols=81 Identities=17% Similarity=-0.041 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG------DGNILSLYADLIWQA 137 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~------~~~al~~lA~~l~~~ 137 (167)
.....+.++.+|++.-... ......+|..++ ..+++++|+++|+++...-.. ...++..+..+...
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~- 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR- 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-
Confidence 3445677777777654321 234456777776 789999999999998655322 23555566667777
Q ss_pred cCCHHHHHHHHHHHH
Q 046296 138 HKDASRAESYFDQAV 152 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al 152 (167)
.++.+..+.+.-+.+
T Consensus 231 ~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 231 LGDVEDYLTTSLELL 245 (247)
T ss_pred hCCHHHHHHHHHHHh
Confidence 788887776655543
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.86 E-value=8.8 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI 126 (167)
Q Consensus 72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a 126 (167)
+.|..+..+|++.+-.... .-|.++ |.+|++.+.+++...|+++..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~---~eAi~~------Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 4 EMARKYAINAVKAEKEGNA---EDAITN------YKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHH------HHHHHHHHHHHHHhCCChHHH
Confidence 3566667777666543211 011121 346666666777778888763
No 391
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=78.80 E-value=4.8 Score=21.76 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHH
Q 046296 140 DASRAESYFDQAVK 153 (167)
Q Consensus 140 ~~~eA~~~~e~Al~ 153 (167)
+..+|+.+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555543
No 392
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=78.46 E-value=4 Score=23.41 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC
Q 046296 125 NILSLYADLIWQAHKDA---SRAESYFDQAVKSAP 156 (167)
Q Consensus 125 ~al~~lA~~l~~~~g~~---~eA~~~~e~Al~l~P 156 (167)
.+.++||++|.. .... .+++.++++.++..|
T Consensus 2 qt~FnyAw~Lv~-S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVK-SNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHhccC
Confidence 456677777776 5443 356777766665544
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.31 E-value=4.4 Score=27.33 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhCCCCH
Q 046296 143 RAESYFDQAVKSAPDDW 159 (167)
Q Consensus 143 eA~~~~e~Al~l~P~~~ 159 (167)
+|++++.++++..|+++
T Consensus 31 ~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 31 KAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHhCCChH
Confidence 44444444555566555
No 394
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=78.12 E-value=6.5 Score=21.70 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 046296 141 ASRAESYFDQAVK 153 (167)
Q Consensus 141 ~~eA~~~~e~Al~ 153 (167)
+++|+.+|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4455555555544
No 395
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.62 E-value=5.2 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
.++..+|.+-. ...+|++|+.-|+++|++
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 35666777765 688999999999999876
No 396
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=77.32 E-value=19 Score=29.10 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKE----VRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQ------ 136 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~----~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~------ 136 (167)
.++..|+++|+.+.. .+.+.+-.+++.++.. +.. +.++|++++.||-.+ ++.++.++|...++.
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~ 162 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFK 162 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhc
Confidence 578899999998876 5667777777765531 011 378999999999765 455666666665544
Q ss_pred -----------------HcCCHHHHHHHHHHHHHhC
Q 046296 137 -----------------AHKDASRAESYFDQAVKSA 155 (167)
Q Consensus 137 -----------------~~g~~~eA~~~~e~Al~l~ 155 (167)
+..+.++|.++--+|.+++
T Consensus 163 t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 163 TNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred ccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 1245667777777776663
No 397
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.89 E-value=4.3 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.6
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 046296 102 VRGDFAKAEELCGRAILA 119 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l 119 (167)
..+++++|..+|..+|+.
T Consensus 18 ~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 568899999998888764
No 398
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.79 E-value=6.4 Score=26.53 Aligned_cols=15 Identities=0% Similarity=0.025 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhC
Q 046296 71 SSSTDAYNEKMIEAN 85 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~ 85 (167)
+++|+.++++|++.|
T Consensus 3 l~kai~Lv~~A~~eD 17 (75)
T cd02680 3 LERAHFLVTQAFDED 17 (75)
T ss_pred HHHHHHHHHHHHHhh
Confidence 456677777776554
No 399
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=76.46 E-value=7.1 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 046296 101 EVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 101 ~~~gd~e~A~~~~~rAl~ 118 (167)
...+++++|+.+|..|++
T Consensus 17 D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 17 DEDGNYEEALELYKEALD 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 467889999888888775
No 400
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.31 E-value=6.6 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
.+|+.+.++|++.|-.-- +.-|..+ |.+|+++|..++...-.++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~---y~eA~~~------Y~~aie~l~~~~~~~~~n~~ 48 (76)
T cd02681 4 RDAVQFARLAVQRDQEGR---YSEAVFY------YKEAAQLLIYAEMAGTLNDS 48 (76)
T ss_pred HHHHHHHHHHHHHHHccC---HHHHHHH------HHHHHHHHHHHHHhcCCChH
Confidence 467778888887764311 1112222 45777888777666533333
No 401
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.88 E-value=20 Score=32.77 Aligned_cols=65 Identities=18% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 046296 92 LGNYARFLKEVRGDFAKAEELCGRAILA---NP----GDGNILSLYADLIWQAHKD-ASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l---~P----~~~~al~~lA~~l~~~~g~-~~eA~~~~e~Al~l~P~~ 158 (167)
.+-++.++. ..++...|..+|..+++. .. --|.+++.+|.+++. ++. ..+|.+++++|-.-..++
T Consensus 452 ~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhcccc
Confidence 344666776 889999999999998843 22 247889999999999 777 999999999998876543
No 402
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.82 E-value=28 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=47.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHH
Q 046296 102 VRGDFAKAEELCGRAILANPG-DGNILSLYADLIWQAHKDASRAESYFDQA-----VKSAPDDWLN 161 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~-~~~al~~lA~~l~~~~g~~~eA~~~~e~A-----l~l~P~~~~~ 161 (167)
++|-+.-|.++|+-.+.++|. ||.....+-..|.....+|+==++.++.. |..-|+-++.
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS 419 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS 419 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH
Confidence 678899999999999999998 99888877777766467888777776666 5566776643
No 403
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=75.53 E-value=8.3 Score=23.17 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296 76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAE 110 (167)
Q Consensus 76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~ 110 (167)
..|.+||-.+|++...+.-||..|. ..++.+.|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHHh
Confidence 4588999999999999999999997 788886653
No 404
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.23 E-value=11 Score=24.24 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
+++|+.+.++|++.+-.. ++...+ .-|.+|+.++.+++...|+.
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~~A~----~~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYEEAL----ELYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHHHHH----HHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHH----HHHHHHHHHHHHHhccCCCH
Confidence 467778888888776532 111111 12567888888888877643
No 405
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.28 E-value=27 Score=37.33 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=34.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 120 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~ 120 (167)
..++++.|..+.-+|.+.. -|.+....|..+. .+++-..|+..+++-+..+
T Consensus 1682 ~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhh
Confidence 3467777777777777666 4555666677665 6777777777777777554
No 406
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=73.88 E-value=13 Score=31.68 Aligned_cols=45 Identities=20% Similarity=0.027 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 115 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~r 115 (167)
..-+|+.+++.+++..|.|+.+...+..++. ..|-...|.+.|.+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~-~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYS-LLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHh
Confidence 4668999999999999999999999998886 79999999988875
No 407
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.56 E-value=4.9 Score=37.05 Aligned_cols=56 Identities=16% Similarity=-0.034 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
++.-.|+.-...|+++||....+|+.|+.+|. ..+++.+|+.+...+....|.+..
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~-el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALN-ELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHH-HHhhHHHhhhhHHHHhhcCchhhh
Confidence 45567888889999999999999999999997 799999999998888888886654
No 408
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.40 E-value=19 Score=33.33 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 88 NALLLGNYARFLKE-VRGDFAKAEELCGRAILA-----NPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 88 n~~~l~~lA~~l~~-~~gd~e~A~~~~~rAl~l-----~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
.|.++.+||.+... ...+-..++++|.+||.. +-.+...|..+|..+++ ++++.+|+.++-.|-.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHH
Confidence 46677777765321 123346678999999876 34566778889999999 9999999999888754
No 409
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.39 E-value=13 Score=35.95 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=30.0
Q ss_pred cchhhcCCChHHHHHHHHH------HHHhC----CCCHHHH-HHHHHHHHHHcCCHHHHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEK------MIEAN----PGNALLL-GNYARFLKEVRGDFAKAEELC 113 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~k------AL~l~----P~n~~~l-~~lA~~l~~~~gd~e~A~~~~ 113 (167)
+.+|.+.+++++|+++|++ |+++. |....-+ -.++.-| +..++++.|+.+|
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl-~~~~q~daainhf 729 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHL-EQIGQLDAAINHF 729 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH-HHHHhHHHHHHHH
Confidence 4578888999999999874 55543 2221111 1223333 3567777777554
No 410
>PF12854 PPR_1: PPR repeat
Probab=73.29 E-value=9.7 Score=21.11 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGR 115 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~r 115 (167)
...++.+-..+. +.+++++|+++|++
T Consensus 7 ~~ty~~lI~~~C-k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYC-KAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHH-HCCCHHHHHHHHHh
Confidence 445566666776 79999999999875
No 411
>PLN03138 Protein TOC75; Provisional
Probab=72.89 E-value=2.7 Score=40.15 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=6.1
Q ss_pred HHHHHHHHHhCCC
Q 046296 75 DAYNEKMIEANPG 87 (167)
Q Consensus 75 ~~~~~kAL~l~P~ 87 (167)
+..+.++|.+.|.
T Consensus 167 e~~l~~~i~~kpG 179 (796)
T PLN03138 167 EDSFFEMVTLRPG 179 (796)
T ss_pred HHHHHHHHhcCCC
Confidence 3444444555544
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.74 E-value=9 Score=23.04 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 93 GNYARFLKEVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 93 ~~lA~~l~~~~gd~e~A~~~~~rAl~ 118 (167)
+++|..|. .+|+.+.|.+.++..+.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 56888886 79999999999999984
No 413
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=72.62 E-value=13 Score=20.00 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 046296 111 ELCGRAILANPGDGNILSLY 130 (167)
Q Consensus 111 ~~~~rAl~l~P~~~~al~~l 130 (167)
++..++|..+|.+..+|...
T Consensus 4 ~~~~~~l~~~pknys~W~yR 23 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYR 23 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHH
Confidence 34444444444444444443
No 414
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=5.2 Score=34.81 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
.+..|+..-..+++.+|....+++..+.... ...++++|++.++.|....|++..+...+..+-..
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 3444444445556678888888888887765 78899999999999999999999888777665444
No 415
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.96 E-value=8 Score=38.65 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=65.5
Q ss_pred hhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNIL 127 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~al 127 (167)
.|...+++++|+..-++|.-+ .|+....+.+++.+.+ .......|...+.+|..+ .|.-+.+.
T Consensus 982 l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~ 1060 (1236)
T KOG1839|consen 982 LSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRALKLKLLSSGEDHPPTALSF 1060 (1236)
T ss_pred HHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHHHhhccccCCCCCchhhhh
Confidence 344556777777766655433 3455677788887665 667888888888888765 45555666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 128 SLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.++..++.. .++++.|+.+++.|+++
T Consensus 1061 ~nle~l~~~-v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1061 INLELLLLG-VEEADTALRYLESALAK 1086 (1236)
T ss_pred hHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 778888777 89999999999999985
No 416
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.95 E-value=17 Score=32.44 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRA 116 (167)
Q Consensus 85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rA 116 (167)
..+++..|..++.... .+++++-|+++|+++
T Consensus 343 ~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEAL-RQGNIELAEECYQKA 373 (443)
T ss_dssp CCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHC
T ss_pred hcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhh
Confidence 3457889999998875 799999999999986
No 417
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.55 E-value=7.7 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
.+-..+.+ .+++++|.+.|++..+
T Consensus 5 ~li~~~~~-~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCK-MGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHc-cchHHHHHHHHHHHhH
Confidence 34444555 6666666666665543
No 418
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=71.49 E-value=9.5 Score=25.94 Aligned_cols=43 Identities=12% Similarity=-0.095 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 120 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~ 120 (167)
+.|++|..+..+||+.+-... ...|..+ |.+|+..+.+++.+.
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~---~e~Al~~------Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGD---KEQALAH------YRKGLRELEEGIAVP 45 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCC---HHHHHHH------HHHHHHHHHHHcCCC
Confidence 457888888888888876521 1123222 467788888887764
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.26 E-value=52 Score=26.99 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 87 GNALLLGNYARFLKEVRGDFAKAEELCGR----------------AILANPGDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~r----------------Al~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
.+|..+..+|..+. ..+++.+|+.+|-. ..+..|..+..+...+++.+...++..-|...++.
T Consensus 88 Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 47889999999887 78888888866532 12446777888877777766657998888887766
Q ss_pred HHHh
Q 046296 151 AVKS 154 (167)
Q Consensus 151 Al~l 154 (167)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 420
>PHA00370 III attachment protein
Probab=71.20 E-value=18 Score=30.13 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHh
Q 046296 71 SSSTDAYNEKMIEA 84 (167)
Q Consensus 71 ~d~A~~~~~kAL~l 84 (167)
+.+-....+.+|..
T Consensus 148 ~~kma~a~kdaltE 161 (297)
T PHA00370 148 YPKMANANKDALTE 161 (297)
T ss_pred cHHHhhhhhhhhcc
Confidence 44444444455443
No 421
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.15 E-value=27 Score=32.20 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLK---EVRGD------FAKAEELCGRAILANPGDGNILSLYADLIWQAHK 139 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~---~~~gd------~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g 139 (167)
+.+++|+..+-..-++.|+-...+..|-.+.. +.+.+ .-+-+.+.++.+..+..++.++-.-+.-.+. ..
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 790 (831)
T PRK15180 712 GRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH-LR 790 (831)
T ss_pred ccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH-HH
Confidence 67889999888888889998777766655432 12222 1244567778888889998887665555555 88
Q ss_pred CHHHHHHHHHHHHHhC-CCCH
Q 046296 140 DASRAESYFDQAVKSA-PDDW 159 (167)
Q Consensus 140 ~~~eA~~~~e~Al~l~-P~~~ 159 (167)
+|.+|++|+++.-+.+ |..|
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcc
Confidence 9999999999998764 4444
No 422
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.09 E-value=39 Score=36.15 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 71 SSSTDAYNEKMIEA---NPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 71 ~d~A~~~~~kAL~l---~P~----n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
..+-+-.++|++-. +|+ -.+.|..+|++.. ..|.++.|..++-+|.+.. -+.+....|..+|. +|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHH
Confidence 34445555555432 332 3688999999886 7999999999999998877 56777899999999 999999
Q ss_pred HHHHHHHHHHhC
Q 046296 144 AESYFDQAVKSA 155 (167)
Q Consensus 144 A~~~~e~Al~l~ 155 (167)
|+.++++.+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999653
No 423
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.04 E-value=21 Score=27.26 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=37.4
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 119 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l 119 (167)
..++.-++-...++..++-+..+|.++..+|.+|. ..++..+|.+++++|-+.
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHh
Confidence 34566777777777777766778999999999987 899999999999998764
No 424
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=70.04 E-value=8.5 Score=38.47 Aligned_cols=82 Identities=18% Similarity=0.070 Sum_probs=66.4
Q ss_pred hHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCH
Q 046296 71 SSSTDAYNE-KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 71 ~d~A~~~~~-kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~al~~lA~~l~~~~g~~ 141 (167)
..+++.++. ..-.+.|..+..+..++.++. ..+++++|+...++|.-+ .|+....+.+++...+. ..+.
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~ 1031 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNL 1031 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCc
Confidence 345555776 455678999999999999887 899999999998888654 35677888889988888 8888
Q ss_pred HHHHHHHHHHHHh
Q 046296 142 SRAESYFDQAVKS 154 (167)
Q Consensus 142 ~eA~~~~e~Al~l 154 (167)
..|...+.+|+.+
T Consensus 1032 ~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1032 SGALKSLNRALKL 1044 (1236)
T ss_pred cchhhhHHHHHHh
Confidence 8999999888875
No 425
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=70.01 E-value=13 Score=19.30 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 128 SLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
..+-..+.+ .+++++|+++|++..+.
T Consensus 4 n~li~~~~~-~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 4 NTLIDGLCK-AGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHc
Confidence 334445566 77777777777776553
No 426
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.69 E-value=35 Score=28.67 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-----------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296 74 TDAYNEKMIEANPGNALLLGNYARFLKEV----R-----------------GDFAKAEELCGRAILANPGDGNILSLYAD 132 (167)
Q Consensus 74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~-----------------gd~e~A~~~~~rAl~l~P~~~~al~~lA~ 132 (167)
-.+.++.=++..|++..++..+|.++... + .-.++|..++.+|++++|+...+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 45566667788999999998888876411 1 13588999999999999999888776655
Q ss_pred HH
Q 046296 133 LI 134 (167)
Q Consensus 133 ~l 134 (167)
+-
T Consensus 142 ~s 143 (277)
T PF13226_consen 142 IS 143 (277)
T ss_pred HH
Confidence 43
No 427
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=69.44 E-value=33 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296 104 GDFAKAEELCGRAILANPGDGNILSLYA 131 (167)
Q Consensus 104 gd~e~A~~~~~rAl~l~P~~~~al~~lA 131 (167)
++...++.-..++++.+|+||.++..|-
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Q 48 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQ 48 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3444555555556667777776665543
No 428
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=69.41 E-value=19 Score=26.97 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPG------------DGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~------------~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
..+.|++|...|++|+++... ++-.+..|+.++.. .++|++++.--++||.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALR 83 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 457899999999999987532 34455678888998 9999988777776664
No 429
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=68.58 E-value=12 Score=25.66 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 046296 138 HKDASRAESYFDQAVKSAPDDWLNLIKLY 166 (167)
Q Consensus 138 ~g~~~eA~~~~e~Al~l~P~~~~~l~~yy 166 (167)
.++..++++-..++++.+|+||.+|++|.
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Q 48 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQ 48 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34555666667778889999999998773
No 430
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=68.36 E-value=62 Score=31.35 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--AHKDASRAESY 147 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--~~g~~~eA~~~ 147 (167)
..++-+.-++.-+.+++.+...+..|-.++. ..+++++-...-.++.++.|..+..|.....-..- ...+..++...
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3445567777778888888888888888886 78999999988889999999999988876654332 13566788888
Q ss_pred HHHHHHh
Q 046296 148 FDQAVKS 154 (167)
Q Consensus 148 ~e~Al~l 154 (167)
|++|+.-
T Consensus 173 ~ekal~d 179 (881)
T KOG0128|consen 173 FEKALGD 179 (881)
T ss_pred HHHHhcc
Confidence 9998864
No 431
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.08 E-value=9.3 Score=25.58 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG 122 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~ 122 (167)
+.+|+..+++|++.+-. .++.. ...-|.+|+.+|..+++..|+
T Consensus 3 l~~A~~l~~~Ave~d~~-----~~y~e----A~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKEEE-----GDYEA----AFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHHH-----hhHHH----HHHHHHHHHHHHHHHhccCCC
Confidence 56888899999887644 22222 223467888999999987755
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.93 E-value=35 Score=33.15 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPG---------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---------~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
.....++..+. ...++++|..++.++...-|. .++.....|.+... ++++++|+++.+.++..-|.+.+
T Consensus 416 ~Lvll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 416 RLVLLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred hHHHHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccccc
Confidence 33344555554 688999999999988776554 23444556777777 89999999999999999887654
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.71 E-value=62 Score=25.87 Aligned_cols=65 Identities=20% Similarity=0.128 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPGNA-------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~-------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
++.|+..++..-+-.|..- ..+--.|.+.+...|.+++|++.+++.+. +|++......|..+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 6678877777655544321 11222333334578999999999999998 89888887777766554
No 434
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.16 E-value=49 Score=28.89 Aligned_cols=78 Identities=19% Similarity=0.081 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Q 046296 88 NALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPGDGNILS--LYADLIWQAHKDASRAESYFDQAVKS---APDD 158 (167)
Q Consensus 88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l----~P~~~~al~--~lA~~l~~~~g~~~eA~~~~e~Al~l---~P~~ 158 (167)
||..+..+.....+...|.++|++++++.++. +-.++.++. ..+.++.. .++..++.+.+...-+. -+.-
T Consensus 73 Nplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~~ld~~~~v 151 (380)
T KOG2908|consen 73 NPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKSMLDSLDGV 151 (380)
T ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccCC
Confidence 34444444444445678999999999988754 222344433 46667777 89999999988877552 2222
Q ss_pred -HHHHHhcc
Q 046296 159 -WLNLIKLY 166 (167)
Q Consensus 159 -~~~l~~yy 166 (167)
+.++.+||
T Consensus 152 ~~~Vh~~fY 160 (380)
T KOG2908|consen 152 TSNVHSSFY 160 (380)
T ss_pred ChhhhhhHH
Confidence 23666655
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.04 E-value=13 Score=32.82 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-------HHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 95 YARFLKEVRGDFAKAEELCGRA-------ILA-NPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 95 lA~~l~~~~gd~e~A~~~~~rA-------l~l-~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
+.+++. ..|||..|++.++.. ... -+-+..+++.+|-++++ +++|.+|++.|...|-
T Consensus 128 LlRvh~-LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHC-LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHH-hccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444444 578999998876642 111 12345667788888888 9999999999988764
No 436
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.77 E-value=16 Score=24.33 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
.+++|+.+.++|++.+-.. ++...+ .-|..|+++|..+++..|+.
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g-----~y~eA~----~lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRG-----DAAAAL----SLYCSALQYFVPALHYETDA 46 (75)
T ss_pred cHHHHHHHHHHHHHHHHhc-----cHHHHH----HHHHHHHHHHHHHHhhCCCH
Confidence 4678889999998876431 111111 22568888999998877443
No 437
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.61 E-value=49 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.024 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+.|.+|..+|..-. ..+...+|++.|-|| ++|..+...-.+.-+ .+.|++-++|+..|-+.
T Consensus 1102 n~p~vWsqlakAQL-~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL-QGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHH-hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHh
Confidence 45778888887654 677888888888666 666666676666667 88888888888888664
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.19 E-value=89 Score=27.14 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=30.2
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 046296 66 NNNHGSSSTDAYNEKMIEANPGNAL--LLGNYARFLK-EVRGDFAKAEELCGRAIL 118 (167)
Q Consensus 66 ~~~g~~d~A~~~~~kAL~l~P~n~~--~l~~lA~~l~-~~~gd~e~A~~~~~rAl~ 118 (167)
+.+++|..|...|+.+++.=|.+.. .+..++..+. ...-++++|.+++++.+.
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567788888888888775233322 3333333221 134567777777775554
No 439
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.95 E-value=12 Score=31.85 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHcCC--
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLK-----EVRGDFAKAEELCGRAILANPGDGNILSLYADL---IWQAHKD-- 140 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~-----~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~---l~~~~g~-- 140 (167)
+..-...-++.|+.||.|...|...-.++. ....++.+-.++-..+|..||.|..+|.+.-.. .+. .++
T Consensus 126 ~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~-~~~vi 204 (328)
T COG5536 126 WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN-RGDVI 204 (328)
T ss_pred cchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh-hcccc
Confidence 566667788999999999887764333331 022345555777788899999999998876332 222 332
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHH
Q 046296 141 ----ASRAESYFDQAVKSAPDDWLNLI 163 (167)
Q Consensus 141 ----~~eA~~~~e~Al~l~P~~~~~l~ 163 (167)
+++-++++-+++-.+|++..++.
T Consensus 205 sqk~l~~eL~~i~~~if~~p~~~S~w~ 231 (328)
T COG5536 205 SQKYLEKELEYIFDKIFTDPDNQSVWG 231 (328)
T ss_pred hHHHHHHHHHHHHhhhhcCccccchhh
Confidence 56678888888889998876653
No 440
>PF13041 PPR_2: PPR repeat family
Probab=65.71 E-value=25 Score=20.66 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
..++..+-..+.+ .+++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~-~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCK-AGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 3455566666777 88888888888888764
No 441
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.48 E-value=45 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 126 ILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
...++|.++.. +++.+=.++|++-|
T Consensus 52 sCHNLA~FWR~-~gd~~yELkYLqlA 76 (140)
T PF10952_consen 52 SCHNLADFWRS-QGDSDYELKYLQLA 76 (140)
T ss_pred HHhhHHHHHHH-cCChHHHHHHHHHH
Confidence 34566776666 77777777776544
No 442
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=65.34 E-value=15 Score=32.62 Aligned_cols=96 Identities=9% Similarity=-0.107 Sum_probs=50.0
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCH--------HH--------HHHHHHHHHHHcCCH-----HHHHHHHHHHH-----H
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNA--------LL--------LGNYARFLKEVRGDF-----AKAEELCGRAI-----L 118 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~--------~~--------l~~lA~~l~~~~gd~-----e~A~~~~~rAl-----~ 118 (167)
+++.+++.+|+..|+.+|..=|--. ++ -|-+|..+...+..+ +.....++-|. .
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~ 293 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCK 293 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS-
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCC
Confidence 4567899999999999998743221 11 111222222222222 22223333332 2
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 119 ANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 119 l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
+.|.+...-...|+-++.+.++|.-|...-++.|++.|....
T Consensus 294 LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 294 LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp --HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 234333333334443333489999999999999999998764
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.00 E-value=26 Score=26.31 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.+.....+.-.+. .+++.-|.++.+.++..+|+|..+.
T Consensus 70 ~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar 107 (141)
T PF14863_consen 70 ADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEAR 107 (141)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3444555666677 8999999999999999999887654
No 444
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=63.24 E-value=8.9 Score=32.09 Aligned_cols=6 Identities=0% Similarity=0.495 Sum_probs=2.4
Q ss_pred chheee
Q 046296 22 YVQTMV 27 (167)
Q Consensus 22 ~~~~~~ 27 (167)
+.-+++
T Consensus 226 ~~~~~~ 231 (271)
T COG1512 226 WLNGVL 231 (271)
T ss_pred ccceeE
Confidence 343333
No 445
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.06 E-value=25 Score=23.10 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~ 123 (167)
+++|+.++++|++.+-..- +...+ .-|..|+++|.++++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~-----y~eA~----~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGN-----YEEAL----RLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHcCC-----HHHHH----HHHHHHHHHHHHHHhhCCCH
Confidence 5678888889888764321 11111 22568888999999888843
No 446
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=62.89 E-value=16 Score=27.52 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=25.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIW 135 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~ 135 (167)
.+-+.+.|+.+|+..+++.|++..++..|-..+-
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 4667899999999999999999998877655543
No 447
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.63 E-value=15 Score=34.99 Aligned_cols=98 Identities=18% Similarity=0.064 Sum_probs=70.7
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLK-EVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~-~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~ 136 (167)
++..++..++..|.-.|..++.+-|.+ .....+.+.++. ...+++.+++.-+.-|+...|....++.-.+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 445556666777766677777777732 333444444332 234788999999999999999999998888888887
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 137 AHKDASRAESYFDQAVKSAPDDWL 160 (167)
Q Consensus 137 ~~g~~~eA~~~~e~Al~l~P~~~~ 160 (167)
.++++-|++-+.-.....|.++.
T Consensus 140 -l~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 140 -LNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred -HHHHHHHHHHHHHHhcCCCCcch
Confidence 77788888887777888888843
No 448
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.45 E-value=83 Score=29.22 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
++.+.-.+..+.++|+.. .+-.+++.++.++. ....++--.+++|.++.+-++...-..|+..|- +.+-+.+..+
T Consensus 79 n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~--en~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE--kik~sk~a~~ 153 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYG-ESKMALLELLQCYK--ENGNEQLYSLWERLVEYDFNDVVIGRELADKYE--KIKKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHHHhc-chHHHHHHHHHHHH--hcCchhhHHHHHHHHHhcchhHHHHHHHHHHHH--HhchhhHHHH
Confidence 345556667778888764 55677788888876 336677788999999999999888888887665 4788888888
Q ss_pred HHHHHHh
Q 046296 148 FDQAVKS 154 (167)
Q Consensus 148 ~e~Al~l 154 (167)
|.+|+-.
T Consensus 154 f~Ka~yr 160 (711)
T COG1747 154 FGKALYR 160 (711)
T ss_pred HHHHHHH
Confidence 8888753
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.15 E-value=80 Score=27.44 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 046296 95 YARFLKEVRGDFAKAEELCGRAILANPGDGN--ILSLYA--DLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 95 lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~--al~~lA--~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.+.-++ ...+|..|.+.++..+..-|.+.. .+..+. ..+|. .-++++|..+++..+..
T Consensus 137 ~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 344455 689999999999999986343333 444443 34566 88999999999988765
No 450
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=61.85 E-value=80 Score=26.63 Aligned_cols=74 Identities=9% Similarity=-0.049 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA 151 (167)
Q Consensus 72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A 151 (167)
++|+..+-..+..+ .+.+....|.++- +-+...|+..+.+.+...-.++.+...-|.+|-. .++ +++++.+++-
T Consensus 186 EeaI~al~~~l~~~--SalfrhEvAfVfG--Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGa-Ia~-e~~~~vL~e~ 259 (289)
T KOG0567|consen 186 EEAINALIDGLADD--SALFRHEVAFVFG--QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGA-IAD-EDCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHhcccc--hHHHHHHHHHHHh--hccchhhhHHHHHHHHhhhcchHHHHHHHHHHHh-hcC-HHHHHHHHHH
Confidence 44444444444433 3444444444332 2233455666666666666666666655555554 444 4444444443
No 451
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=60.41 E-value=46 Score=30.06 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=43.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 117 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl 117 (167)
-|.+.++.+-|+..-.+.|-++|..+..+..-|.+.. ...+|.+|-..+--|.
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR-~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFR-RLERYSEAARSAMIAD 289 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4777889999999999999999999999998888775 6778888776655554
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.14 E-value=75 Score=29.99 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH-------------HHHHHcCCHHH
Q 046296 85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNILSLYAD-------------LIWQAHKDASR 143 (167)
Q Consensus 85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~al~~lA~-------------~l~~~~g~~~e 143 (167)
..+++.-|-.|+.+.. ..+++..|.++|.+|..+ ...+++.+..+|. +++. .|++++
T Consensus 662 e~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l-~g~~~~ 739 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFL-SGDYEE 739 (794)
T ss_pred hhcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHH-cCCHHH
Confidence 4456667777887664 788999999999987543 2344443333332 3455 788888
Q ss_pred HHHHHHHH
Q 046296 144 AESYFDQA 151 (167)
Q Consensus 144 A~~~~e~A 151 (167)
.++++..-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 77776554
No 453
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=59.60 E-value=24 Score=18.43 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 127 LSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 127 l~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
+..+-.++.+ .++++.|..+|++..+
T Consensus 4 y~~ll~a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4445555666 7777777777776654
No 454
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=58.94 E-value=15 Score=32.46 Aligned_cols=57 Identities=21% Similarity=0.044 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCC-CCHHHHHhc
Q 046296 106 FAKAEELCGRAILANPGDGNILSLYADLIWQAHK------------DASRAESYFDQAVKSAP-DDWLNLIKL 165 (167)
Q Consensus 106 ~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g------------~~~eA~~~~e~Al~l~P-~~~~~l~~y 165 (167)
+.+|++++++|.. -++|..|..+|.+++. .| -|.+|...+.+|-...- ....++.|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMID-LGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 5678888888875 6777888888887766 44 35577777777755422 233444443
No 455
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.84 E-value=69 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=37.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
..++.+.+..++...-..........+-+|..+.. +|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhc
Confidence 45666666666665433334567788888999888 9999999999999854
No 456
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.58 E-value=1.4e+02 Score=27.76 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=61.6
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------CCCCH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------------NPGDG 124 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------------------~P~~~ 124 (167)
|..+ ..++-...+++.++.+-++...-..|+..+. +.+..++..+|.+|+.. -|++.
T Consensus 109 y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE--kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~ 185 (711)
T COG1747 109 YKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE--KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDK 185 (711)
T ss_pred HHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH--HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccH
Confidence 4344 5666677788888888888888888887653 57778888888877643 13333
Q ss_pred HHHHHH------------HHHHHH-------HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 125 NILSLY------------ADLIWQ-------AHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 125 ~al~~l------------A~~l~~-------~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
+....+ +.++++ ...++.+|+..+...++.+..|..+.
T Consensus 186 D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 186 DFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 322211 111111 24578899999998888887776554
No 457
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.52 E-value=36 Score=31.99 Aligned_cols=71 Identities=17% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 73 STDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAV 152 (167)
Q Consensus 73 ~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al 152 (167)
+...+.++||++.|+ +.-.+.++ + +.++++.|..+..++ ++..-|..|+.+... .+++..|.++|.+|.
T Consensus 625 e~~g~~e~AL~~s~D-~d~rFela--l--~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 625 ESQGMKEQALELSTD-PDQRFELA--L--KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS-AGELPLASECFLRAR 693 (794)
T ss_pred hhccchHhhhhcCCC-hhhhhhhh--h--hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh-cccchhHHHHHHhhc
Confidence 344556777877665 33344444 2 578888887664443 677788899999998 999999999999986
Q ss_pred Hh
Q 046296 153 KS 154 (167)
Q Consensus 153 ~l 154 (167)
.+
T Consensus 694 d~ 695 (794)
T KOG0276|consen 694 DL 695 (794)
T ss_pred ch
Confidence 54
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.37 E-value=94 Score=27.46 Aligned_cols=95 Identities=14% Similarity=-0.022 Sum_probs=54.6
Q ss_pred cCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-H-----
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILA-NPGDGNILSLYADLIWQ-A----- 137 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~--~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-~P~~~~al~~lA~~l~~-~----- 137 (167)
+.|+..+|++.|+...+-.|-.. .++-|+-..+. ..+-|......+-|-=++ -|+++.+.+.-|.+-.+ +
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalL-E~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFs 365 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALL-ELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFS 365 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcC
Confidence 34788899999999888887322 22234444443 344454444444333333 36666555544433221 0
Q ss_pred ------cC---CHHHHHHHHHHHHHhCCCCHHHH
Q 046296 138 ------HK---DASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 138 ------~g---~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.| -...|++.+.+|++.+|.-|.++
T Consensus 366 pd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 366 PETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred chhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 11 11358899999999999988655
No 459
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.16 E-value=88 Score=25.11 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=43.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR 143 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e 143 (167)
|+...+++++|+.++-.. .+.|..+ .....+|. .+++...|+.+++. ..-.+.++++...+..+ .. .+...|
T Consensus 87 W~LD~~~~~~A~~~L~~p-s~~~~~~---~~Il~~L~-~~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La-~~~v~E 158 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHP-SLIPWFP---DKILQALL-RRGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LA-NGLVTE 158 (226)
T ss_pred HHhChHhHHHHHHHhCCC-CCCcccH---HHHHHHHH-HCCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HH-cCCHHH
Confidence 445556677777666332 2223333 23344554 46777777766654 45555666666555555 34 567777
Q ss_pred HHHHHHHH
Q 046296 144 AESYFDQA 151 (167)
Q Consensus 144 A~~~~e~A 151 (167)
|..+.++.
T Consensus 159 Af~~~R~~ 166 (226)
T PF13934_consen 159 AFSFQRSY 166 (226)
T ss_pred HHHHHHhC
Confidence 76655443
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=56.49 E-value=86 Score=23.90 Aligned_cols=20 Identities=0% Similarity=0.023 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 046296 139 KDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 139 g~~~eA~~~~e~Al~l~P~~ 158 (167)
...++..+++...++++|..
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~ 172 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEE 172 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCC
Confidence 35667777888888887743
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.39 E-value=63 Score=23.46 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 73 STDAYNEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 117 (167)
Q Consensus 73 ~A~~~~~kAL~l--~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl 117 (167)
.+...|+.+... --+.+.++..+|.++. ..+++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 556666666553 4567888888998885 8999999999999886
No 462
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.01 E-value=44 Score=31.03 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=49.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
+...++++....+.-+......+..+...|.++-+ .+..++|-.+|++.+..+|++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNNDEARY 78 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCcchHH
Confidence 56678888888888777666777777777888887 899999999999999999998654
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.70 E-value=30 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296 129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162 (167)
Q Consensus 129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l 162 (167)
.+|..+.. .|++++|..+|-+||..-|+-...+
T Consensus 68 ~lGE~L~~-~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLA-QGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 45666666 7777777777777777777544444
No 464
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=54.52 E-value=20 Score=31.69 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHh
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG------------DFAKAEELCGRAILA 119 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g------------d~e~A~~~~~rAl~l 119 (167)
+.+|+.++++|.. -++|..|.++|.++. ..| -|.+|+.++++|=..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I-~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMI-DLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHH-HHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHh-hhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 5678888888866 567888888777653 332 266777777777554
No 465
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.15 E-value=84 Score=22.95 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l-~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~ 147 (167)
+.+++|..++.= |+..+.-.++- .-....|. .+|+|++| + .+......|+..-.++.+-++ .|-.+++...
T Consensus 20 HcH~EA~tIa~w-L~~~~~~~E~v~lIr~~sLm-NrG~Yq~A---L--l~~~~~~~pdL~p~~AL~a~k-lGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADW-LEQEGEMEEVVALIRLSSLM-NRGDYQEA---L--LLPQCHCYPDLEPWAALCAWK-LGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHH-HHHTTTTHHHHHHHHHHHHH-HTT-HHHH---H--HHHTTS--GGGHHHHHHHHHH-CT-HHHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHH-hhHHHHHH---H--HhcccCCCccHHHHHHHHHHh-hccHHHHHHH
Confidence 567777766544 45555543332 22233343 79999999 2 223344555556667778888 9999999988
Q ss_pred HHHH-HHhCCC
Q 046296 148 FDQA-VKSAPD 157 (167)
Q Consensus 148 ~e~A-l~l~P~ 157 (167)
+.+. .+-+|.
T Consensus 92 l~rla~~g~~~ 102 (116)
T PF09477_consen 92 LTRLASSGSPE 102 (116)
T ss_dssp HHHHCT-SSHH
T ss_pred HHHHHhCCCHH
Confidence 8843 444443
No 466
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=53.62 E-value=50 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFL 99 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l 99 (167)
+.+.|..+|++.++..|++..++..|...+
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 445667777777777777777766655544
No 467
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=53.22 E-value=1.1e+02 Score=28.39 Aligned_cols=88 Identities=14% Similarity=0.014 Sum_probs=59.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHH-HHHHHHHHHHHcCCH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI-LANPGDGNI-LSLYADLIWQAHKDA 141 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl-~l~P~~~~a-l~~lA~~l~~~~g~~ 141 (167)
.++...-...+..|+.++-+..++...-|..+|.......++.++|..++.+.- .++|..-.- -...+.+... +.++
T Consensus 37 ~~lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la-~~q~ 115 (604)
T COG3107 37 VLLQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALA-QKQP 115 (604)
T ss_pred hhccCCcchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHh-ccCh
Confidence 445555566777778888888787766666666544347899999999998876 555433222 2334556666 7888
Q ss_pred HHHHHHHHHHH
Q 046296 142 SRAESYFDQAV 152 (167)
Q Consensus 142 ~eA~~~~e~Al 152 (167)
..|.+++.+..
T Consensus 116 ~~Al~~L~~~~ 126 (604)
T COG3107 116 AAALQQLAKLL 126 (604)
T ss_pred HHHHHHHhhcc
Confidence 88888887653
No 468
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=53.18 E-value=20 Score=30.93 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296 70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS 128 (167)
Q Consensus 70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~ 128 (167)
..++|+.+|++|++ .++.|.+-+|+..|+.|+++.|+--..+.
T Consensus 15 ~~kkA~~l~~~av~----------------~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 15 LAKKAIALYEKAVL----------------KEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHH----------------HhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 34566666666543 24678888999999999998876554444
No 469
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=18 Score=32.33 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHH--HhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 68 NHGSSSTDAYNEKMI--EANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG 124 (167)
Q Consensus 68 ~g~~d~A~~~~~kAL--~l~P~n--~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~ 124 (167)
.+.+++|.....++. +.+.+| +.+++.++.+-. .+.+|..|.+++.+|++..|++.
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchh
Confidence 345666666555543 111222 334445565554 67899999999999999999854
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.72 E-value=59 Score=26.26 Aligned_cols=53 Identities=9% Similarity=-0.135 Sum_probs=33.6
Q ss_pred chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRA 116 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rA 116 (167)
..|+..+++++|+.+|+.++...... ..++..+..+.. ..++.+..+.+.-+.
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~-~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK-RLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 46888899999999999997664432 223333444444 566666665554443
No 471
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.61 E-value=73 Score=21.23 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG 124 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~ 124 (167)
-.+|+.+.++|++.+-.-- +.-|.. -|.+|+.+|..++...|+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~---y~eAl~------~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGR---FQEALV------CYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHHHhcc---HHHHHH------HHHHHHHHHHHHHhhCCCHH
Confidence 4578888888888764311 111222 25688888999998887553
No 472
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.47 E-value=22 Score=34.22 Aligned_cols=87 Identities=21% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
-+..|++.++..|.-..-|..|-.+.. ..|+...-...++||+.-.+.+...|..|+..+-...+-.+.+...+-+|++
T Consensus 297 ~~~~~e~~~q~~~~~~q~~~~yidfe~-~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 297 ILFKFERLVQKEPIKDQEWMSYIDFEK-KSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 344456666666666666777777665 6788877788888888888888888888877654434555566666666666
Q ss_pred hCCCCHHH
Q 046296 154 SAPDDWLN 161 (167)
Q Consensus 154 l~P~~~~~ 161 (167)
..|-.-.+
T Consensus 376 ~cp~tgdL 383 (881)
T KOG0128|consen 376 SCPWTGDL 383 (881)
T ss_pred CCchHHHH
Confidence 65544333
No 473
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=50.39 E-value=86 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=8.0
Q ss_pred cCCHHHHHHHHHHHHHh
Q 046296 103 RGDFAKAEELCGRAILA 119 (167)
Q Consensus 103 ~gd~e~A~~~~~rAl~l 119 (167)
.||+.+|++...++-+.
T Consensus 72 ~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKL 88 (108)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 44444555444444333
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=49.72 E-value=1.3e+02 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296 89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG 122 (167)
Q Consensus 89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~ 122 (167)
+.+|.-+|.++. ..+.++..+.+|++||.....
T Consensus 140 aKYWIC~Arl~~-~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 140 AKYWICLARLEP-RTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHcCCC
Confidence 455556666554 566666777777777766544
No 475
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.57 E-value=1.7e+02 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAI 117 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~----~l~~lA~~l~~~~gd~e~A~~~~~rAl 117 (167)
.+.++|+..|++++++.|.-.+ ++-.+-.+.+ ..+++++-.+.|++.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHH
Confidence 5789999999999999998643 3333444444 5677777766666554
No 476
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.82 E-value=53 Score=31.90 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=17.5
Q ss_pred chhhcCCChHHHHHHHHHHHH
Q 046296 63 NYSNNNHGSSSTDAYNEKMIE 83 (167)
Q Consensus 63 ~~y~~~g~~d~A~~~~~kAL~ 83 (167)
...++++++++|...|-++|.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc
Confidence 356678999999999999885
No 477
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=48.12 E-value=31 Score=27.51 Aligned_cols=14 Identities=57% Similarity=1.116 Sum_probs=7.0
Q ss_pred cccccCCCCcccCC
Q 046296 29 GGGLGNNGGKICGG 42 (167)
Q Consensus 29 ~~~~~~~~~~~~~~ 42 (167)
|||+++++++|-|+
T Consensus 6 gggg~~g~~gfRgg 19 (215)
T KOG3262|consen 6 GGGGGGGGGGFRGG 19 (215)
T ss_pred CCCCCCCCCCcccC
Confidence 44554555555444
No 478
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.04 E-value=40 Score=26.91 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=29.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLK 100 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~ 100 (167)
++++++.+++|++.+++.+. +|++......|+.+..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 46788999999999999999 9998887766666543
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.41 E-value=54 Score=20.81 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=12.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 046296 133 LIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 133 ~l~~~~g~~~eA~~~~e~Al~ 153 (167)
-+.. .|++++|.+|+++..+
T Consensus 32 gllq-lg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 32 GLLQ-LGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHH-CCCHHHHHHHHHHHHH
Confidence 3455 6777777777776654
No 480
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.25 E-value=1.7e+02 Score=25.60 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHh-----CCCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEA-----NPGNALL--LGNYARFLKEVRGDFAKAEELCGRAIL-------ANPGDGNILSLYADLI 134 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l-----~P~n~~~--l~~lA~~l~~~~gd~e~A~~~~~rAl~-------l~P~~~~al~~lA~~l 134 (167)
.+.++|++++++.++. .| ++.. ....++++. ..+|..++.+.+...-. +.|+-...++.++.-|
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKL-EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 5789999999998865 23 2333 334566654 68898888877766544 3343444556666666
Q ss_pred HHHcCCHHHHHHH
Q 046296 135 WQAHKDASRAESY 147 (167)
Q Consensus 135 ~~~~g~~~eA~~~ 147 (167)
++..++++.+-+.
T Consensus 167 yk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 167 YKKIGDFASYYRH 179 (380)
T ss_pred HHHHHhHHHHHHH
Confidence 6657888764333
No 481
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.06 E-value=78 Score=27.22 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296 103 RGDFAKAEELCGRAILANPGDG----NILSLYADLIWQAHKDASRAESYFDQAVK 153 (167)
Q Consensus 103 ~gd~e~A~~~~~rAl~l~P~~~----~al~~lA~~l~~~~g~~~eA~~~~e~Al~ 153 (167)
..+.++|+..|++.+++.|.-. .++-.+-.+.+. +++|++-+..|.+.|.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 4578999999999999998764 344455556777 8888888777777664
No 482
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=45.29 E-value=46 Score=32.36 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296 86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125 (167)
Q Consensus 86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~ 125 (167)
..-+.++..||.+|. ..|++++|.++|-.||++|..|..
T Consensus 992 ~k~~~vhlk~a~~le-degk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLE-DEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred ccCccchhHHhhhhh-hccchhhhhHhhHHHhhcccccch
Confidence 345678888898885 789999999999999999876643
No 483
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=44.96 E-value=42 Score=28.56 Aligned_cols=89 Identities=24% Similarity=0.283 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 046296 69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPGD------GNILSLYADL 133 (167)
Q Consensus 69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---------~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~ 133 (167)
.+.=.|+..|...+.-.|.|..++..-+.++.+ ..-.++.|.+++.+||-..... ..+.+.++..
T Consensus 9 ~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~ 88 (368)
T COG5091 9 KEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVH 88 (368)
T ss_pred cchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHH
Confidence 455678888999999999986655443333211 1235788999999998775421 2445567777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296 134 IWQAHKDASRAESYFDQAVKSAPDD 158 (167)
Q Consensus 134 l~~~~g~~~eA~~~~e~Al~l~P~~ 158 (167)
++. ..+|+-|..||..|+.+--++
T Consensus 89 ~~~-ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 89 FFN-IKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhh-HHHHHHHHHHHHHHHHHhhcc
Confidence 887 899999999999999875444
No 484
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=44.93 E-value=86 Score=29.17 Aligned_cols=79 Identities=8% Similarity=-0.098 Sum_probs=47.1
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHH
Q 046296 65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--------DGNILSLYADLIWQ 136 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--------~~~al~~lA~~l~~ 136 (167)
|....++++|+++++-. .+...|..+|.+.- ...++.-++..|-.+++++.- -+.--..+|.....
T Consensus 583 ~~sssKWeqavRLCrfv-----~eqTMWAtlAa~Av-~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~ 656 (737)
T KOG1524|consen 583 YLSSSKWEQAVRLCRFV-----QEQTMWATLAAVAV-RKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLM 656 (737)
T ss_pred HhccchHHHHHHHHHhc-----cchHHHHHHHHHHH-hhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHH
Confidence 34557888888877654 45566777776554 566777777777666655421 01111234555555
Q ss_pred HcCCHHHHHHHHHH
Q 046296 137 AHKDASRAESYFDQ 150 (167)
Q Consensus 137 ~~g~~~eA~~~~e~ 150 (167)
.|+..+|..++.+
T Consensus 657 -~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 657 -LGRMLEAETILLH 669 (737)
T ss_pred -hccchhhhHHHHh
Confidence 6777777666543
No 485
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=44.48 E-value=84 Score=20.15 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296 77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 156 (167)
Q Consensus 77 ~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P 156 (167)
.+.+.|..+ .++.+......++. .-..++++..+.+++ +..++.+...-...+-. .+ -++++..+.+++.-++
T Consensus 3 ~L~~~l~~~-~~~~vr~~a~~~L~--~~~~~~~~~~L~~~l--~d~~~~vr~~a~~aL~~-i~-~~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 3 ALLQLLQND-PDPQVRAEAARALG--ELGDPEAIPALIELL--KDEDPMVRRAAARALGR-IG-DPEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHH--CCTHHHHHHHHHHHH--TSSSHHHHHHHHHHHHC-CH-HHHTHHHHHHHHTC-S
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHH--HcCCHhHHHHHHHHH--cCCCHHHHHHHHHHHHH-hC-CHHHHHHHHHHHcCCC
Confidence 344455444 45666666666654 445678899999988 44667777776666666 55 4678888988888765
Q ss_pred C
Q 046296 157 D 157 (167)
Q Consensus 157 ~ 157 (167)
+
T Consensus 76 ~ 76 (88)
T PF13646_consen 76 D 76 (88)
T ss_dssp S
T ss_pred c
Confidence 4
No 486
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.94 E-value=2.1e+02 Score=25.28 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK 164 (167)
Q Consensus 122 ~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~ 164 (167)
.+|.+-+.-+.+++. .+++-++.-++..++-+.|+...+..-
T Consensus 211 ~npYv~Yl~~lf~a~-n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 211 LNPYVSYLSGLFYAL-NGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred chHHHHHHHHHhccc-CccHhHHHHHHHHHhccCchhhHHHHH
Confidence 456665666666666 788999999999999888886655443
No 487
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=43.84 E-value=68 Score=30.68 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAV 152 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al 152 (167)
+++++-+|..+.+ ..+|+||.+.|-+|=
T Consensus 804 ~dVy~pyaqwLAE-~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAE-NDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccccchHHHHhhh-hhhHHHHHHHHHHhc
Confidence 4667788998888 888998888887763
No 488
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=1.2e+02 Score=25.80 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 107 AKAEELCGRAILANP-------GDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 107 e~A~~~~~rAl~l~P-------~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
.+-..+.++||+-.. .+|..+..+|..++. -.+..+|..+|-.
T Consensus 103 per~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~-e~~~~~a~~HFll 152 (312)
T KOG3024|consen 103 PERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWT-EDNVEEARRHFLL 152 (312)
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cccHHHHHhHhhh
Confidence 444567777776543 479999999999999 8999999999843
No 489
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=43.12 E-value=8.8 Score=27.72 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=33.7
Q ss_pred hhhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCG 114 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P-~n~~~l~~lA~~l~~~~gd~e~A~~~~~ 114 (167)
.+.+.+.......+++.++..++ .++..+..+..++. ...++++.+.+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~-~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYI-KYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHH-CTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHH-hcCCchHHHHHcc
Confidence 34455678888889999997764 45888888887665 4444477777666
No 490
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=33 Score=33.23 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 124 GNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
..++..||..++. +|++++|..+|-++|..
T Consensus 368 ~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYG-KGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHccc
Confidence 4667789999999 99999999999998874
No 491
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=42.93 E-value=3.3e+02 Score=26.58 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhhcCCChHHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 046296 64 YSNNNHGSSSTDAYNEKMIEANP--------------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSL 129 (167)
Q Consensus 64 ~y~~~g~~d~A~~~~~kAL~l~P--------------~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~ 129 (167)
+...+|+..+|+.++++++...- -+...+..+...+. .+++.+++..+++.+....+...++..
T Consensus 207 A~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~--~~d~~~~l~~~~~l~~~g~~~~~~l~d 284 (830)
T PRK07003 207 ARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA--AGDGPEILAVADEMALRSLSFSTALQD 284 (830)
T ss_pred HHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHH----------HcCCHHHHHHHHHHHHHhCCCCHHHHHhccC
Q 046296 130 YADLIWQ----------AHKDASRAESYFDQAVKSAPDDWLNLIKLYL 167 (167)
Q Consensus 130 lA~~l~~----------~~g~~~eA~~~~e~Al~l~P~~~~~l~~yy~ 167 (167)
+...+.+ ......++..+.+.+-++.+.+...++.+.+
T Consensus 285 Ll~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l 332 (830)
T PRK07003 285 LASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIAT 332 (830)
T ss_pred HHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHH
No 492
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.93 E-value=1.8e+02 Score=28.91 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hhcCCChHHHHHHHHHHH----------HhCCCCHHHHHHHHHHHH-----------HHcCCHHHH--HHHHHHHHHhCC
Q 046296 65 SNNNHGSSSTDAYNEKMI----------EANPGNALLLGNYARFLK-----------EVRGDFAKA--EELCGRAILANP 121 (167)
Q Consensus 65 y~~~g~~d~A~~~~~kAL----------~l~P~n~~~l~~lA~~l~-----------~~~gd~e~A--~~~~~rAl~l~P 121 (167)
..+.+++.+|++.|+.+| +.+-..+.-+...+.-+. ......+++ ++.|-.-..+.|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN 161 (167)
Q Consensus 122 ~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~ 161 (167)
-+.......|.-.+.+.+++..|-.+-.+.+++.|..+.+
T Consensus 1081 ~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
No 493
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.80 E-value=1.2e+02 Score=34.20 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=0.0
Q ss_pred CCcchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------
Q 046296 60 SNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG--------------- 124 (167)
Q Consensus 60 ~~~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~--------------- 124 (167)
+.+++|.--+..++++..|-++.+..--.-.+++.++.++......+.+|..-+++-++..=.++
T Consensus 2724 ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl 2803 (3550)
T KOG0889|consen 2724 NSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNL 2803 (3550)
T ss_pred CcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccH
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccC
Q 046296 125 ---------NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL 167 (167)
Q Consensus 125 ---------~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~yy~ 167 (167)
+.+...|.++.+ .+++++|-+.|..|++++-.-+.+|++.++
T Consensus 2804 ~yF~~~q~aeff~lkG~f~~k-L~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2804 MYFSDRQKAEFFTLKGMFLEK-LGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred HHHhhHHHHHHHHhhhHHHHH-hcCcchhHHHHHHHHHHHhhhHHHHHHHHH
No 494
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=42.40 E-value=18 Score=29.83 Aligned_cols=20 Identities=50% Similarity=0.989 Sum_probs=0.0
Q ss_pred cccccCCCCcccCCCCCCCC
Q 046296 29 GGGLGNNGGKICGGRGGGDV 48 (167)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (167)
|||+.++|+..-||+||+.+
T Consensus 1 Gggg~~~g~~~~gGgGG~~~ 20 (263)
T KOG3074|consen 1 GGGGRGGGGAVTGGGGGGGG 20 (263)
T ss_pred CCCCCCCCCCCcCCCCCccc
No 495
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.26 E-value=1.1e+02 Score=30.86 Aligned_cols=76 Identities=18% Similarity=0.056 Sum_probs=0.0
Q ss_pred cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296 62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA 141 (167)
Q Consensus 62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~ 141 (167)
+.+.....-+++|.+.|++ ......--.+|.+..+.++.|.++.+|. +.+.+|..+|.+.++ .+..
T Consensus 1055 a~iai~~~LyEEAF~ifkk--------f~~n~~A~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKK--------FDMNVSAIQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHH--------hcccHHHHHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCch
Q ss_pred HHHHHHHHHH
Q 046296 142 SRAESYFDQA 151 (167)
Q Consensus 142 ~eA~~~~e~A 151 (167)
.+|++-|-+|
T Consensus 1121 ~dAieSyika 1130 (1666)
T KOG0985|consen 1121 KDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHhc
No 496
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.25 E-value=1.3e+02 Score=21.79 Aligned_cols=61 Identities=13% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 046296 105 DFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLY 166 (167)
Q Consensus 105 d~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~yy 166 (167)
+.++-++.++++-..+ |--|-++..|+.+|.. .|+.+.|++.|+.--++-|.+..++.-+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCccchhHHHHHH
No 497
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.98 E-value=87 Score=25.44 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 107 AKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 107 e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
.+|++++.++++..|+.++.+...++++-.-......=++.+++.|++
T Consensus 26 ~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 26 PQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAI 73 (233)
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=41.39 E-value=1.1e+02 Score=25.35 Aligned_cols=43 Identities=26% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296 111 ELCGRAILA--------NPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS 154 (167)
Q Consensus 111 ~~~~rAl~l--------~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l 154 (167)
+.|+-+..+ .|.-......+|.+|.+ .|..++|.+|++.....
T Consensus 177 EiyEya~~l~~~~~~~~~~~l~~~Kl~yA~~Lae-~G~~~~A~kY~d~i~~~ 227 (284)
T PF12931_consen 177 EIYEYALSLSSNNPQFGLPHLQPYKLQYASLLAE-QGLLSEALKYCDAIASS 227 (284)
T ss_dssp HHHHHHHHT---STT---CCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCcCcHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH
No 499
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=41.35 E-value=1.4e+02 Score=21.82 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCC-CCHH
Q 046296 67 NNHGSSSTDAYNEKMIEANPGNAL----------------LLGNYARFLKEVRGD----FAKAEELCGRAILANP-GDGN 125 (167)
Q Consensus 67 ~~g~~d~A~~~~~kAL~l~P~n~~----------------~l~~lA~~l~~~~gd----~e~A~~~~~rAl~l~P-~~~~ 125 (167)
+-.++.+|...++++++.+|.+.. +|-.+=.+|. ..|- .---..+++.|.+..= .+.+
T Consensus 1 r~~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~-~~G~~~~~~~spr~~ir~A~~~glI~d~~ 79 (123)
T TIGR01987 1 KFESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLA-QEGINDIGAYSPKDVLKEAFRAGLIGDES 79 (123)
T ss_pred CHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHH-HcCCcccccCCHHHHHHHHHHcCCcCCHH
Q ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHhc
Q 046296 126 ILSLYADLIWQAHKDASR--AESYFDQAVKSAPDDWLNLIKL 165 (167)
Q Consensus 126 al~~lA~~l~~~~g~~~e--A~~~~e~Al~l~P~~~~~l~~y 165 (167)
.|..+-..--...+.|++ |.+.++.+.+.-|.-......+
T Consensus 80 ~W~~ml~~RN~tsHtYde~~a~~i~~~I~~y~~~~~~l~~~l 121 (123)
T TIGR01987 80 LWIAMLDDRNITSHTYDQEKAREIYAQIRDYVPEFEFLLEQL 121 (123)
T ss_pred HHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.15 E-value=1.4e+02 Score=21.88 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296 71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ 150 (167)
Q Consensus 71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~ 150 (167)
++++++.|... +.--+|+..+...-.+.. ...+ ..-+-.|-..-.+--..+..+..+|.++.. ++++.+|.++|+.
T Consensus 49 Lerc~~~f~~~-~~YknD~RyLkiWi~ya~-~~~d-p~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 49 LERCIRYFEDD-ERYKNDPRYLKIWLKYAD-NCDE-PRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHhhhh-hhhcCCHHHHHHHHHHHH-hcCC-HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Done!