BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046297
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/248 (81%), Positives = 222/248 (89%)
Query: 84 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIP 143
TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG D+FIGDI D++SI P
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 65
Query: 144 AIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGA 203
A QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AG
Sbjct: 66 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV 125
Query: 204 KQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIR 263
K IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+R
Sbjct: 126 KHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVR 185
Query: 264 ELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKAL 323
ELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKAL
Sbjct: 186 ELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKAL 245
Query: 324 FSQITTRF 331
FSQ+T+RF
Sbjct: 246 FSQVTSRF 253
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 85 VLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIG--GADDLFIGDIRDSNSII 142
VLV GA G+ + + +LK + + A VR EE ++ GA D+ + ++ + S
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA--XVRNEEQGPELRERGASDIVVANLEEDFS-- 79
Query: 143 PAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAG 202
A IDA++ + P D +D G I A+ G
Sbjct: 80 HAFASIDAVVFAAGSGPHTGADKTIL-----------------IDLWGAIKTIQEAEKRG 122
Query: 203 AKQIVLVGSMGGTNLNH-PLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGG 261
K+ + V S+G + + P N + LV KR A+ L S + YTI+R G L ++E
Sbjct: 123 IKRFIXVSSVGTVDPDQGPXNXR---HYLVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
Query: 262 IRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDL 306
+ + E+ TR+I R DVA+V + + + K F++
Sbjct: 180 GKVTVSPHFSEI----TRSITRHDVAKVIAELVDQQHTIGKTFEV 220
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 44/175 (25%)
Query: 85 VLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFI--GDIRDSNSII 142
+ +TGA G+ G V + L + +VR Q + A + + D D ++
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA-AQGITVRQADYGDEAALT 60
Query: 143 PAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAG 202
A+QG++ L++++S+ E G Q +N I+AAKAAG
Sbjct: 61 SALQGVEKLLLISSS--------------------EVGQRAPQ-----HRNVINAAKAAG 95
Query: 203 AKQIVLVGSMGGTNLNH----PLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAG 253
K I T+L H PL L + +I + E+ LADSGI YT++R G
Sbjct: 96 VKFIAY------TSLLHADTSPLG-LADEHI-----ETEKMLADSGIVYTLLRNG 138
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 84 TVLVTGAGGRTGQIVYKKLKERSEQ-----YAARGLVRTEESKQKIGGADDLFIGDIRDS 138
T+L+TG G G+ +K+ + + Y+ L ++E + + FIGD+RD
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDL 82
Query: 139 NSIIPAIQGIDALIILTSAVPKMKP--DFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQID 196
+ A++G+D I + +A K P +++P + + + +G N I+
Sbjct: 83 ERLNYALEGVD--ICIHAAALKHVPIAEYNPLECIK-------------TNIMGASNVIN 127
Query: 197 AAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKR--KAEQYLADSGIPYTIIRAGG 254
A Q++ + + N P+N G + K A + S ++++R G
Sbjct: 128 ACLKNAISQVIALSTDKAAN---PINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGN 184
Query: 255 LQDKEGGI----RELLVGKDDELLQTETR 279
+ G + ++L+ K E+ T+ R
Sbjct: 185 VVGSRGSVVPFFKKLVQNKASEIPITDIR 213
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 85 VLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPA 144
+LVTG+ GR G+ V L R++ RG + G + +G + D ++ A
Sbjct: 22 ILVTGSAGRVGRAVVAAL--RTQGRTVRGF-----DLRPSGTGGEEVVGSLEDGQALSDA 74
Query: 145 IQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAK 204
I G+ A++ L + + D D V+ G + +DAA AAG +
Sbjct: 75 IMGVSAVLHLGAFMSWAPADRDRMFA---------------VNVEGTRRLLDAASAAGVR 119
Query: 205 QIVLVGS 211
+ V S
Sbjct: 120 RFVFASS 126
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K +V+V S
Sbjct: 294 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 352
Query: 212 MGG 214
GG
Sbjct: 353 NGG 355
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K +V+V S
Sbjct: 293 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 351
Query: 212 MGG 214
GG
Sbjct: 352 NGG 354
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K +V+V S
Sbjct: 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 330
Query: 212 MGG 214
GG
Sbjct: 331 NGG 333
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K +V+V S
Sbjct: 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 330
Query: 212 MGG 214
GG
Sbjct: 331 NGG 333
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K +V+V S
Sbjct: 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFMVMVSS 330
Query: 212 MGG 214
GG
Sbjct: 331 NGG 333
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 29/124 (23%)
Query: 213 GGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI--------IRAGGLQDKEGGIRE 264
G N N+ + + + + W K E+ L ++GI Y I RA QD EG ++
Sbjct: 352 GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKI 411
Query: 265 LLVGKDDELLQTET------RTIARA-----------DVAEVC----IQALQFEEAKFKA 303
L+ K + +L IA A DVA VC + F+EA A
Sbjct: 412 LIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAA 471
Query: 304 FDLA 307
+D A
Sbjct: 472 YDKA 475
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 159 PKMKPD-----FDPAKGGRPEFYFEE--GAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGS 211
P PD F + GRP+ Y G P+++ W G +NQ DA ++ K V V S
Sbjct: 266 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ-DADVSSDGKFXVXVSS 324
Query: 212 MGG 214
GG
Sbjct: 325 NGG 327
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 65 RRSCVSKTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKI 124
+R+ A K L S VL G Y+ E+ R RT+E+ +K
Sbjct: 117 KRTAAVSAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKF 176
Query: 125 GGADDLFIGDIRDSNSIIPAIQGIDALIILTSA 157
D G++R +S+ A+ G D +I +T A
Sbjct: 177 A---DTVQGEVRVCSSVQEAVAGADVIITVTLA 206
>pdb|1LRN|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRN|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRO|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRO|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
pdb|1LRQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
Length = 267
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 192 KNQIDAAKAAGAKQIVLV---GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYT 248
KN ++ K GAK+I L + G NL SL + K+ A+ +G +
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLP-----IMKQWAKVIYDATG---S 186
Query: 249 IIRAGGLQDKEGGIRELL 266
+ GGL DK GG+RE +
Sbjct: 187 VQLPGGLGDKSGGMREFI 204
>pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1PE1|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PE1|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PCK|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCK|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCW|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|1PCW|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|2A21|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A21|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A2I|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|2A2I|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|3E0I|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E0I|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E12|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
pdb|3E12|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
Length = 267
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 187
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 188 QLPGGLGDKSGGMREFI 204
>pdb|2NX3|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 187
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 188 QLPGGLGDKSGGMREFI 204
>pdb|2NXG|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXG|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 134 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 186
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 187 QLPGGLGDKSGGMREFI 203
>pdb|1T8X|A Chain A, R106g Kdo8ps With Pep And A5p
pdb|1T8X|B Chain B, R106g Kdo8ps With Pep And A5p
pdb|1T96|A Chain A, R106g Kdo8ps With Pep
pdb|1T96|B Chain B, R106g Kdo8ps With Pep
pdb|1T99|A Chain A, R106g Kdo8ps Without Substrates
pdb|1T99|B Chain B, R106g Kdo8ps Without Substrates
pdb|1ZHA|A Chain A, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZHA|B Chain B, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZJI|A Chain A, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
pdb|1ZJI|B Chain B, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
Length = 267
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 187
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 188 QLPGGLGDKSGGMREFI 204
>pdb|2NWR|A Chain A, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWR|B Chain B, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWS|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NWS|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 187
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 188 QLPGGLGDKSGGMREFI 204
>pdb|2EF9|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2EF9|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 135 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 187
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 188 QLPGGLGDKSGGMREFI 204
>pdb|2NXI|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 192 KNQIDAAKAAGAKQIVLV--GSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTI 249
KN ++ K GAK+I L G+ G N N + + L ++ + + D+ +++
Sbjct: 134 KNVVEKLKFGGAKEIYLTERGTTFGYN-----NLVVDFRSLPIMKQWAKVIYDA--THSV 186
Query: 250 IRAGGLQDKEGGIRELL 266
GGL DK GG+RE +
Sbjct: 187 QLPGGLGDKSGGMREFI 203
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 194 QIDAAKAAGAKQIVLVGSM-GGTNLNHPL----NSLGNGNILVWKRKAEQYLADSGIPYT 248
Q+D K ++++L+GS GT LN L + + + + + +A+ D P
Sbjct: 509 QLDRQKPRQGRRVLLLGSQQAGTTLNLDLGGKHSPICHTTMAFLRDEAD--FRDKLSPIV 566
Query: 249 IIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQF 296
+ L E G+ +V D +Q +TR + +VC+ LQ
Sbjct: 567 LSLNVSLPPTEAGMAPAVVLHGDTHVQEQTRIVLDCGEDDVCVPQLQL 614
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,713,472
Number of Sequences: 62578
Number of extensions: 347170
Number of successful extensions: 955
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 38
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)