BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046299
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00305|Y12M_BPT4 Uncharacterized 12.9 kDa protein in Gp30-rIII intergenic region
OS=Enterobacteria phage T4 GN=y12M PE=4 SV=1
Length = 110
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 34 LRKLAGDII-TNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79
L + GDII + D +F ++ NF +GWI ++LNT+I+G
Sbjct: 26 LMAVEGDIIEVETTEGMGTDFTFTIQVHNFFTGWI--YELNTVIVGK 70
>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820
OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1
Length = 890
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI---ITNLSRLAHMDLSFDL 57
+ L + NNRLNGT+ K S P + L+ + GDI I N +L + L
Sbjct: 352 LNKLDLSNNRLNGTIPKELCSMPRLQYL--LLDQNSIRGDIPHEIGNCVKLLQLQLG--- 406
Query: 58 RTFNFSSGWIPP 69
N+ +G IPP
Sbjct: 407 --RNYLTGTIPP 416
>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis
thaliana GN=EXS PE=1 SV=1
Length = 1192
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR----KLAGDI---ITNLSRLAHMDL 53
++ L + NN+LNG + + SF SL+ L KL G + + NL L HMDL
Sbjct: 654 LQGLNLANNQLNGHIPE------SFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDL 707
Query: 54 SFDLRTFNFSS 64
SF+ + SS
Sbjct: 708 SFNNLSGELSS 718
>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1
Length = 742
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 15 LTKASDSFPSFSFWTSLIILRKLAGDIIT--NLSRLAHMD------LSFDLRTFNFSSGW 66
+TK S S S + +S I K+ +I++ NL L D +S DLR +
Sbjct: 126 ITKLSPSLESLNL-SSNFISGKIPEEIVSLKNLKSLVLRDNMFWGFVSDDLRGLS----- 179
Query: 67 IPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYVSQSWTIIDL 126
L + LG K+GP +P +P + S + FR I Q + +DL
Sbjct: 180 ----NLQELDLGGNKLGP----EVPSLPSKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDL 231
Query: 127 GINKFSGQYPR 137
N+F+G P
Sbjct: 232 SSNEFTGSIPE 242
>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1
Length = 728
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 37 LAGDI---ITNLSRLAHMDLSFDLRTFNFSSGWIPPFQ----LNTIILGSCKMGPGFPNP 89
++G+I I++L L + L+ +L FN G +P + L + LG K+GP
Sbjct: 144 ISGNIPKEISSLKNLRSLVLANNL--FN---GSVPDLRGLSNLQELNLGGNKLGPEV--- 195
Query: 90 IPEMPHDVLISSFQQYVFRVDIYFQQYVSQSWTIIDLGINKFSGQYPR 137
+P + +++ S + F I Q +DL NKF+G PR
Sbjct: 196 VPSLASNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPR 243
>sp|P58114|Y3178_CAUCR Pirin-like protein CC_3178 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=CC_3178 PE=3 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 51 MDLSFDLRT---FNFSSGWIPPFQLNTII--------LGSCKMGPGFPNPIPEMPHDVLI 99
+DL FD R NF G + PF + ++ +G PGFP PH +
Sbjct: 2 IDLVFDARRKDLGNFEVGRVLPFHAHRMVGPFTFLDHMGPAAFQPGFPKSADVRPHPHIG 61
Query: 100 SSFQQYVFRVDIYFQQYVSQSWTIIDLGIN 129
S Y+F +I + V I +N
Sbjct: 62 LSTLTYLFEGEITHRDSVGSLAVIKPHEVN 91
>sp|B0JHX2|COBQ_MICAN Cobyric acid synthase OS=Microcystis aeruginosa (strain NIES-843)
GN=cobQ PE=3 SV=1
Length = 491
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 62 FSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYVSQSW 121
+++G IP ++N I+L P M V+I V Y+Q Y Q W
Sbjct: 63 WAAGTIPRVEMNPILL----------KPQGNMTSQVIIKGKAVGVTTAVDYYQNYFEQGW 112
Query: 122 TIIDLGINKFSGQY 135
I + K S ++
Sbjct: 113 QAIKESLAKLSAEF 126
>sp|Q39YP9|MURA_GEOMG UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=murA PE=3 SV=2
Length = 417
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 7 GNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDIITNLSRLAHMDLSFD 56
G +L+G A+D S S +IL LA D T +SR+ H+D +D
Sbjct: 355 GVKKLSGAPVMATDLRASAS-----LILAGLAADNTTEISRIYHLDRGYD 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,419,628
Number of Sequences: 539616
Number of extensions: 2074369
Number of successful extensions: 5005
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4993
Number of HSP's gapped (non-prelim): 25
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)