Query 046299
Match_columns 138
No_of_seqs 434 out of 1613
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 3.3E-19 7.2E-24 148.1 9.5 133 1-136 142-301 (968)
2 PLN00113 leucine-rich repeat r 99.8 8.8E-19 1.9E-23 145.6 9.8 134 1-137 406-589 (968)
3 KOG4194 Membrane glycoprotein 99.6 9.1E-16 2E-20 119.4 3.7 130 3-136 177-333 (873)
4 KOG4194 Membrane glycoprotein 99.6 6.3E-16 1.4E-20 120.2 2.5 114 1-117 199-330 (873)
5 KOG0617 Ras suppressor protein 99.6 1E-16 2.2E-21 108.5 -1.9 131 2-138 36-191 (264)
6 KOG0444 Cytoskeletal regulator 99.5 5.8E-16 1.3E-20 121.7 -1.9 131 1-137 105-285 (1255)
7 PLN03150 hypothetical protein; 99.5 6.7E-14 1.4E-18 112.1 6.5 88 2-92 421-512 (623)
8 KOG0617 Ras suppressor protein 99.4 2.2E-15 4.7E-20 102.1 -3.3 109 26-137 33-167 (264)
9 KOG0472 Leucine-rich repeat pr 99.4 2.2E-15 4.9E-20 112.9 -5.0 128 2-137 140-292 (565)
10 KOG0618 Serine/threonine phosp 99.4 1.1E-14 2.3E-19 117.7 -2.6 114 1-130 361-487 (1081)
11 KOG0444 Cytoskeletal regulator 99.4 2.4E-14 5.2E-19 112.7 -1.2 126 4-133 83-259 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.3 5.1E-13 1.1E-17 91.3 2.8 111 1-126 21-147 (175)
13 PLN03150 hypothetical protein; 99.3 3.8E-12 8.3E-17 102.1 6.9 100 27-136 419-532 (623)
14 PRK15387 E3 ubiquitin-protein 99.3 1.2E-11 2.5E-16 100.8 7.9 64 71-136 383-462 (788)
15 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.5E-16 100.8 7.4 123 1-136 222-383 (754)
16 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-12 2.6E-17 96.3 1.2 55 2-59 84-150 (319)
17 KOG0618 Serine/threonine phosp 99.2 2.7E-13 5.9E-18 109.8 -3.5 130 1-137 243-424 (1081)
18 PRK15370 E3 ubiquitin-protein 99.2 2.1E-11 4.5E-16 99.3 7.2 88 1-100 201-291 (754)
19 KOG4237 Extracellular matrix p 99.2 5E-13 1.1E-17 100.0 -2.3 73 2-77 70-147 (498)
20 KOG1259 Nischarin, modulator o 99.2 8.1E-13 1.8E-17 96.5 -1.5 118 1-136 286-415 (490)
21 PRK15387 E3 ubiquitin-protein 99.2 6.4E-11 1.4E-15 96.6 9.1 129 1-136 244-418 (788)
22 KOG0472 Leucine-rich repeat pr 99.2 2.2E-13 4.8E-18 102.3 -4.8 116 1-132 185-310 (565)
23 PF13855 LRR_8: Leucine rich r 99.2 4.9E-11 1.1E-15 67.9 5.1 61 46-116 1-61 (61)
24 cd00116 LRR_RI Leucine-rich re 99.2 5E-12 1.1E-16 93.0 0.2 130 1-133 53-235 (319)
25 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.3E-16 84.0 2.4 111 6-133 4-127 (175)
26 PF13855 LRR_8: Leucine rich r 99.1 1E-10 2.2E-15 66.5 4.8 56 27-82 2-61 (61)
27 PLN03210 Resistant to P. syrin 99.1 4.9E-10 1.1E-14 95.4 10.5 128 2-136 592-741 (1153)
28 PLN03210 Resistant to P. syrin 99.1 6E-10 1.3E-14 94.9 10.7 65 71-136 779-862 (1153)
29 COG4886 Leucine-rich repeat (L 99.1 4.6E-11 1E-15 90.8 2.6 129 2-136 143-294 (394)
30 KOG4237 Extracellular matrix p 99.0 2.2E-10 4.7E-15 86.1 2.7 80 1-83 276-359 (498)
31 KOG0532 Leucine-rich repeat (L 99.0 3.7E-11 8.1E-16 93.6 -1.6 123 3-133 102-248 (722)
32 COG4886 Leucine-rich repeat (L 98.9 4.2E-10 9.1E-15 85.6 2.7 127 1-133 118-269 (394)
33 KOG0532 Leucine-rich repeat (L 98.9 1.8E-11 3.9E-16 95.4 -4.9 128 3-138 79-229 (722)
34 KOG1259 Nischarin, modulator o 98.8 7.3E-10 1.6E-14 81.3 0.1 95 25-132 283-387 (490)
35 KOG3207 Beta-tubulin folding c 98.6 1.3E-08 2.7E-13 77.5 0.9 91 26-117 197-314 (505)
36 KOG1859 Leucine-rich repeat pr 98.6 3.7E-10 7.9E-15 90.5 -7.6 113 3-132 168-292 (1096)
37 KOG1909 Ran GTPase-activating 98.5 2.1E-08 4.6E-13 74.3 -1.0 58 1-58 94-169 (382)
38 KOG0531 Protein phosphatase 1, 98.4 3E-08 6.6E-13 76.2 -0.8 126 1-133 97-246 (414)
39 PF12799 LRR_4: Leucine Rich r 98.4 2.1E-07 4.6E-12 49.4 1.8 36 47-83 2-37 (44)
40 KOG3207 Beta-tubulin folding c 98.3 4.6E-08 9.9E-13 74.5 -2.3 78 2-83 124-210 (505)
41 KOG1909 Ran GTPase-activating 98.2 8.6E-08 1.9E-12 71.2 -2.2 100 26-131 185-310 (382)
42 KOG2739 Leucine-rich acidic nu 98.2 7.4E-07 1.6E-11 63.9 2.3 91 15-117 35-129 (260)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.1E-11 45.7 3.3 33 27-59 2-37 (44)
44 KOG0531 Protein phosphatase 1, 98.2 9.8E-08 2.1E-12 73.4 -2.7 126 1-133 120-269 (414)
45 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.3E-11 71.7 1.8 112 1-117 124-263 (699)
46 COG5238 RNA1 Ran GTPase-activa 98.1 4.2E-06 9.1E-11 61.0 4.0 128 1-132 32-227 (388)
47 KOG1644 U2-associated snRNP A' 98.1 1.3E-05 2.8E-10 55.9 6.2 93 26-128 42-149 (233)
48 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 2.9E-12 62.1 -3.7 93 28-132 29-136 (177)
49 KOG1859 Leucine-rich repeat pr 98.0 1.8E-07 4E-12 75.5 -4.6 95 26-133 164-268 (1096)
50 KOG4579 Leucine-rich repeat (L 97.7 2.9E-06 6.4E-11 55.9 -2.4 90 3-95 31-124 (177)
51 PRK15386 type III secretion pr 97.7 0.00032 6.9E-09 54.1 8.0 114 1-130 54-188 (426)
52 KOG4658 Apoptotic ATPase [Sign 97.6 2.5E-05 5.4E-10 65.4 2.0 89 26-115 545-653 (889)
53 KOG4658 Apoptotic ATPase [Sign 97.6 2.5E-05 5.4E-10 65.4 1.6 78 1-81 573-653 (889)
54 KOG3665 ZYG-1-like serine/thre 97.5 2.3E-05 5E-10 64.1 0.5 106 26-133 122-264 (699)
55 KOG2982 Uncharacterized conser 97.4 7.7E-05 1.7E-09 55.1 1.9 31 103-133 223-263 (418)
56 KOG2120 SCF ubiquitin ligase, 97.2 7.8E-06 1.7E-10 60.3 -4.9 30 26-55 210-243 (419)
57 PF00560 LRR_1: Leucine Rich R 97.2 0.00012 2.7E-09 32.7 0.7 21 1-22 2-22 (22)
58 PF00560 LRR_1: Leucine Rich R 97.2 0.00015 3.3E-09 32.4 1.0 19 72-91 2-20 (22)
59 PRK15386 type III secretion pr 97.1 0.0025 5.3E-08 49.3 7.3 96 26-132 52-169 (426)
60 KOG1644 U2-associated snRNP A' 97.0 0.0018 4E-08 45.4 5.0 94 28-133 21-127 (233)
61 KOG2120 SCF ubiquitin ligase, 96.9 2.7E-05 5.9E-10 57.5 -4.9 55 26-80 185-244 (419)
62 COG5238 RNA1 Ran GTPase-activa 96.3 0.0012 2.7E-08 48.4 0.6 86 26-117 30-133 (388)
63 KOG2982 Uncharacterized conser 96.2 0.0012 2.6E-08 49.0 -0.2 15 102-116 144-158 (418)
64 KOG2739 Leucine-rich acidic nu 96.2 0.0038 8.2E-08 45.1 2.3 78 44-133 41-130 (260)
65 PF13504 LRR_7: Leucine rich r 96.1 0.0028 6E-08 26.4 0.8 16 120-136 2-17 (17)
66 PF13306 LRR_5: Leucine rich r 96.0 0.089 1.9E-06 33.3 8.1 82 17-114 6-91 (129)
67 PF13306 LRR_5: Leucine rich r 95.5 0.089 1.9E-06 33.3 6.6 87 1-93 14-103 (129)
68 KOG2123 Uncharacterized conser 95.2 0.001 2.2E-08 48.9 -3.7 79 3-87 23-105 (388)
69 KOG2123 Uncharacterized conser 94.8 0.00046 9.9E-09 50.7 -6.4 80 26-116 19-100 (388)
70 smart00364 LRR_BAC Leucine-ric 94.7 0.021 4.5E-07 26.5 1.3 18 119-137 2-19 (26)
71 smart00370 LRR Leucine-rich re 94.2 0.032 6.9E-07 25.5 1.3 14 46-59 2-15 (26)
72 smart00369 LRR_TYP Leucine-ric 94.2 0.032 6.9E-07 25.5 1.3 14 46-59 2-15 (26)
73 KOG0473 Leucine-rich repeat pr 92.5 0.0019 4.2E-08 46.4 -6.3 80 26-117 42-124 (326)
74 smart00365 LRR_SD22 Leucine-ri 92.1 0.13 2.7E-06 23.9 1.6 15 45-59 1-15 (26)
75 PF13516 LRR_6: Leucine Rich r 91.7 0.12 2.6E-06 23.1 1.3 14 46-59 2-15 (24)
76 KOG0473 Leucine-rich repeat pr 89.8 0.0043 9.2E-08 44.7 -6.7 81 40-132 36-124 (326)
77 smart00368 LRR_RI Leucine rich 88.2 0.39 8.4E-06 22.4 1.5 13 46-58 2-14 (28)
78 KOG3864 Uncharacterized conser 86.6 0.05 1.1E-06 38.3 -3.0 58 26-83 101-165 (221)
79 KOG1947 Leucine rich repeat pr 76.7 0.68 1.5E-05 35.7 -0.4 56 26-81 188-254 (482)
80 KOG3763 mRNA export factor TAP 75.3 1.7 3.7E-05 35.1 1.5 58 26-83 218-283 (585)
81 KOG3763 mRNA export factor TAP 69.7 2.1 4.4E-05 34.6 0.8 36 44-80 216-254 (585)
82 KOG4308 LRR-containing protein 68.5 0.037 8.1E-07 43.8 -9.1 15 44-58 202-216 (478)
83 smart00367 LRR_CC Leucine-rich 67.1 3.8 8.3E-05 18.4 1.1 10 26-35 2-11 (26)
84 KOG4242 Predicted myosin-I-bin 57.3 9.4 0.0002 30.6 2.3 84 1-85 216-314 (553)
85 KOG1947 Leucine rich repeat pr 54.0 5.6 0.00012 30.7 0.7 57 26-82 243-307 (482)
86 KOG3864 Uncharacterized conser 53.6 2.4 5.2E-05 30.0 -1.3 75 2-79 104-185 (221)
87 TIGR00864 PCC polycystin catio 48.0 10 0.00022 36.5 1.4 28 32-59 1-32 (2740)
88 TIGR00864 PCC polycystin catio 39.7 19 0.00041 34.9 1.7 32 5-39 1-33 (2740)
89 KOG4341 F-box protein containi 37.6 12 0.00026 29.5 0.2 32 26-57 294-331 (483)
90 smart00446 LRRcap occurring C- 22.4 29 0.00063 16.0 0.0 13 42-54 9-21 (26)
91 PF05725 FNIP: FNIP Repeat; I 20.8 1.3E+02 0.0029 15.1 3.1 7 71-77 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=3.3e-19 Score=148.08 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=84.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ .+.+ ..|+++++|++|++++|.+++.+|..+..+.+|++|+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCEEECcCCcccccCChHHhcC---CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 4556666666666666666666 7777777766 6655 4566667777777777766666666666666666777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++.+|..++.+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 7666666666666666665 55555 34455666666666654 2455666666666655
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
.+|
T Consensus 299 ~~p 301 (968)
T PLN00113 299 EIP 301 (968)
T ss_pred CCC
Confidence 554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=8.8e-19 Score=145.55 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=77.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCC-----------------------CCCEEEc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLS-----------------------RLAHMDL 53 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~-----------------------~L~~L~l 53 (138)
|+.|++++|++++.+|..+..+ +.|+.|++++ .+++ ..+..++ +|+.|++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKL---PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCEEECcCCEeeeECChhHhcC---CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 3556666666666666655555 5555555555 5554 2233344 4444555
Q ss_pred ccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--
Q 046299 54 SFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 54 s~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-- 117 (138)
++|++++..|..+..+.+|++|++++|++++.+|..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 555554455544555555556666666665555555555555 55555 34556777777777766
Q ss_pred -------CCCCcEEEccCCeeeecCCC
Q 046299 118 -------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
..+|+.+++++|++.|.+|.
T Consensus 563 ~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 563 IPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CChhHhcCcccCEEeccCCcceeeCCC
Confidence 24577777777777777764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=9.1e-16 Score=119.36 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+|+|++|+|+..-...|..+ .+|..|.|+. +++. ..|.++++|+.|++..|+|...--..|..+.+|+.|.|.
T Consensus 177 ~L~La~N~It~l~~~~F~~l---nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSL---NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred EEeecccccccccccccccc---chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 34444444443333334444 4444444444 4443 334444444444444444432212233333333444444
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
.|.+...-...|..+.+ +++++ -++++|+.|++|+|.|. -++|++|||++|+|+. +
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-L 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-C
Confidence 44443222223333433 44444 34566777777777776 3677788888887776 4
Q ss_pred C
Q 046299 136 P 136 (138)
Q Consensus 136 P 136 (138)
|
T Consensus 333 ~ 333 (873)
T KOG4194|consen 333 D 333 (873)
T ss_pred C
Confidence 4
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=6.3e-16 Score=120.23 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=73.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|..|.|+.|+++...+..|..+ ++|+.|+|.. +++. -.|.++++|+.|.+..|.+...-...|..+.++++|+
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L---~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRL---PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred heeeecccCcccccCHHHhhhc---chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 4578899999988777788889 9999999988 6665 5666666666666666666554455555555566666
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
++.|+++..--.|+.+++. .|++| ...++|++|+|++|+|+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 6666655444445555555 55555 33344555555555544
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=108.53 Aligned_cols=131 Identities=11% Similarity=0.146 Sum_probs=92.4
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|.||+|+++. +|+.+..+ .+|+.|++++ +++. ..++.+++|+.|+++-|++. ..|..|+..+.|+.|++.
T Consensus 36 TrLtLSHNKl~~-vppnia~l---~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 36 TRLTLSHNKLTV-VPPNIAEL---KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhcccCceee-cCCcHHHh---hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 456677888754 66667777 7777777777 7777 66777777777777777764 566777777777777777
Q ss_pred CCcCCC-CCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGP-GFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~-~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++.. .+|..|..+.. .+.++ +.+++|+.|.+..|.+- .+.|++|.+.+|+++- +|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v-lp 189 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV-LP 189 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-cC
Confidence 777652 35555554444 23332 56677999999999876 4678899999999987 76
Q ss_pred CC
Q 046299 137 RE 138 (138)
Q Consensus 137 ~~ 138 (138)
+|
T Consensus 190 pe 191 (264)
T KOG0617|consen 190 PE 191 (264)
T ss_pred hh
Confidence 54
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=5.8e-16 Score=121.67 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=85.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.||||+|++.. .|..+..- +++-+|+||+ ++.. ..|.+++.|-.||+|+|++. .+|+....+..|++|.
T Consensus 105 Lt~lDLShNqL~E-vP~~LE~A---Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 105 LTILDLSHNQLRE-VPTNLEYA---KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ceeeecchhhhhh-cchhhhhh---cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 4567777777743 66666666 6777777777 6666 55667777777777777774 4455555555566666
Q ss_pred ecCCcCC-------------------------CCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-
Q 046299 77 LGSCKMG-------------------------PGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV- 117 (138)
Q Consensus 77 l~~n~l~-------------------------~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~- 117 (138)
+++|.+. ..+|.++..+.+ .+|+| -.+.+|+.|+||+|+|+
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 6666442 124444444444 45555 34567888888888887
Q ss_pred -------CCCCcEEEccCCeeeecCCC
Q 046299 118 -------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+.++++|++|.|+++. +|+
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~-LP~ 285 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTV-LPD 285 (1255)
T ss_pred eeccHHHHhhhhhhccccchhcc-chH
Confidence 5788888888888876 664
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=6.7e-14 Score=112.15 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=70.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.|+|++|.++|.+|..++.+ ++|+.|+|++ .+++ ..++.+++|+.|++++|++++.+|..+..+.+|++|++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L---~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKL---RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEECCCCCccccCCHHHhCC---CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 467888888888888888888 8888888888 8876 56788888888888888888888887877888888888
Q ss_pred cCCcCCCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPIPE 92 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~ 92 (138)
++|+++|.+|..+..
T Consensus 498 s~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 NGNSLSGRVPAALGG 512 (623)
T ss_pred cCCcccccCChHHhh
Confidence 888888888877664
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-15 Score=102.12 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
...+.|.+|+ +++. ..++.+.+|+.|++++|+++ .+|..+..+++|+.|+++-|++. ..|..|+.++. ++|+.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 7788889999 8888 88899999999999999995 77888888899999999999997 88999998877 55554
Q ss_pred -------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCCC
Q 046299 101 -------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 101 -------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
-.++.|+.|+++.|.+. .++|+.|.+.+|.+-. +|.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpk 167 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPK 167 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcH
Confidence 11234455555555555 3566666676666654 553
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=2.2e-15 Score=112.89 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=98.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.++..+|+++. .|+.++.+ .++..+++.+ +++. +..-+++.|+++|..+|-+ +.+|+.++.+.+|+.|++.
T Consensus 140 ~dl~~~~N~i~s-lp~~~~~~---~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQISS-LPEDMVNL---SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhcccccccc-CchHHHHH---HHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhh
Confidence 345666677753 56667777 7777777777 7776 3333478888888888877 4788888888888888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
.|++. .+| +|..+.. ++.++ +.+.++..||++.|+++ ..+|++||+|+|.+++ +|
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp 291 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LP 291 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CC
Confidence 88886 677 6666665 44444 67889999999999999 4789999999999998 77
Q ss_pred C
Q 046299 137 R 137 (138)
Q Consensus 137 ~ 137 (138)
.
T Consensus 292 ~ 292 (565)
T KOG0472|consen 292 Y 292 (565)
T ss_pred c
Confidence 5
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-14 Score=117.73 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=87.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.|++.+|.++...-+.+.+. +.|+.|+|++ ++.. ..+.++..|++|++|+|+++ .+|.....+..|++|.
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~---~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNF---KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHhcCcccccchhhhccc---cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 3556777888876655556666 7888888888 7776 66777888888888888885 5666777777788888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------C-CCCcEEEccCCe
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------S-QSWTIIDLGINK 130 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~-~~L~~L~Ls~N~ 130 (138)
..+|++. .+| .+..++ +|+.+|+|.|+++ | ++|++||+++|.
T Consensus 437 ahsN~l~-~fP-e~~~l~----------qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLP----------QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcC----------cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888886 777 555544 4999999999988 5 789999999986
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=2.4e-14 Score=112.72 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=87.6
Q ss_pred EEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 4 LFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 4 L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
+++.+|++. .-+|..+..+ ..|+.||||+ +++. ..+..-+++-+|++|+|+|.....+-|.++..|-+|++++
T Consensus 83 v~~R~N~LKnsGiP~diF~l---~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRL---KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HhhhccccccCCCCchhccc---ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 344455542 1256667777 7888888888 8777 5666677777888888888644445566667777888888
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-------------------------------------cCCCceeEEEeeCCccc---
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-------------------------------------SFQQYVFRVDIYFQQYV--- 117 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-------------------------------------~~l~~L~~L~ls~N~l~--- 117 (138)
|++. .+|+.++++.. .|+++ ..+.+|..+|+|.|.+.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 8886 67776666555 55555 34567777788888776
Q ss_pred -----CCCCcEEEccCCeeee
Q 046299 118 -----SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 -----~~~L~~L~Ls~N~l~g 133 (138)
..+|+.|+||+|+|+.
T Consensus 239 ecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred HHHhhhhhhheeccCcCceee
Confidence 3678888888888875
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=5.1e-13 Score=91.29 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=37.9
Q ss_pred CcEEEccCccccCcCCcccc-CCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCC-ccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASD-SFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGW-IPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~-~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~L~~L~ 76 (138)
+++|+|.+|.|+. + +.++ .+ .+|+.|++++ .++. +.+..++.|++|++++|+++. +++.+ ..+++|++|+
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l---~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATL---DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT----TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-c-cchhhhh---cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 3567888888864 3 3454 46 7788888888 8887 777788888888888888863 33222 2356788888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDL 126 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~L 126 (138)
+++|+|. .+- .+..+. .+++|+.|++.+|.++ .++|+.||-
T Consensus 95 L~~N~I~-~l~-~l~~L~-------~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKIS-DLN-ELEPLS-------SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS----SCC-CCGGGG-------G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCC-ChH-HhHHHH-------cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888886 222 222221 2556888888888877 466776653
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=3.8e-12 Score=102.13 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=87.1
Q ss_pred CccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 27 FWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.++.|+|++ .+++ ..++.+++|+.|++++|.++|.+|..+..+.+|+.|++++|+++|.+|+.++.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~------- 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS------- 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC-------
Confidence 378899999 9988 77999999999999999999999999999999999999999999999999988766
Q ss_pred CCceeEEEeeCCccc---C-------CCCcEEEccCCeeeecCC
Q 046299 103 QQYVFRVDIYFQQYV---S-------QSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 103 l~~L~~L~ls~N~l~---~-------~~L~~L~Ls~N~l~g~iP 136 (138)
|++|++++|+++ | .++..+++++|.....+|
T Consensus 492 ---L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 ---LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ---CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999998 3 345678899887554444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.2e-11 Score=100.83 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred CcceEEecCCcCCCCCCCCCCCCCCeEEec--------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeec
Q 046299 71 QLNTIILGSCKMGPGFPNPIPEMPHDVLIS--------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls--------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~ 134 (138)
+|+.|++++|+|+ .+|.....+. .|+++ ....+|+.|++++|+|+ .++++.++|++|+|+|.
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~s~L~-~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLPSELK-ELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccceEEecCCccc-CCCCcccCCC-EEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 4566666666665 3444332211 45554 11235667777777777 35677788888888775
Q ss_pred CC
Q 046299 135 YP 136 (138)
Q Consensus 135 iP 136 (138)
+|
T Consensus 461 ~~ 462 (788)
T PRK15387 461 TL 462 (788)
T ss_pred HH
Confidence 44
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1.2e-11 Score=100.81 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=61.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|+|+. +|..+. .+|+.|++++ +++. ..+. ++|+.|++++|+++ .+|..+. .+|++|++
T Consensus 222 L~~L~Ls~N~Lts-LP~~l~-----~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 222 IKTLYANSNQLTS-IPATLP-----DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred CCEEECCCCcccc-CChhhh-----ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 5677777777764 454332 3455555555 5544 1121 24555555555554 2333332 24555555
Q ss_pred cCCcCCCCCCCCCCC-------------------CCC--eEEec---------cCCCceeEEEeeCCccc------CCCC
Q 046299 78 GSCKMGPGFPNPIPE-------------------MPH--DVLIS---------SFQQYVFRVDIYFQQYV------SQSW 121 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~-------------------l~~--~L~ls---------~~l~~L~~L~ls~N~l~------~~~L 121 (138)
++|+++ .+|..+.. .++ .|+++ .-.++|+.|++++|+|+ +++|
T Consensus 291 s~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L 369 (754)
T PRK15370 291 YDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTI 369 (754)
T ss_pred CCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhhcCCc
Confidence 555554 23322110 011 23333 11236667777777666 4566
Q ss_pred cEEEccCCeeeecCC
Q 046299 122 TIIDLGINKFSGQYP 136 (138)
Q Consensus 122 ~~L~Ls~N~l~g~iP 136 (138)
+.|++++|+|++ +|
T Consensus 370 ~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 370 TTLDVSRNALTN-LP 383 (754)
T ss_pred CEEECCCCcCCC-CC
Confidence 777777777764 55
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.2e-12 Score=96.31 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=26.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCC---ccEEEccc-cccc-------ccccCC-CCCCEEEcccCccc
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSF---WTSLIILR-KLAG-------DIITNL-SRLAHMDLSFDLRT 59 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~---L~~L~Ls~-~l~~-------~~~~~l-~~L~~L~ls~N~l~ 59 (138)
++|++++|.+.+..+..+..+ .+ |++|++++ ++++ ..+..+ ++|+.|++++|.++
T Consensus 84 ~~L~l~~~~~~~~~~~~~~~l---~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 84 QELDLSDNALGPDGCGVLESL---LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred eEEEccCCCCChhHHHHHHHH---hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 455555555544444444444 33 55555555 5442 223334 45555555555554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=2.7e-13 Score=109.78 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=97.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+++++++|++++ +|++++.+ .+|+.++..+ +++. ..+...++|+.+.+.+|.++ -+|+...+...|++|++
T Consensus 243 l~~~dis~n~l~~-lp~wi~~~---~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 243 LQYLDISHNNLSN-LPEWIGAC---ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ceeeecchhhhhc-chHHHHhc---ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 5788999999976 67999999 9999999999 8877 66777888888888888885 56666677778999999
Q ss_pred cCCcCCCCCCCCCCCCCC----eEEec------------------------------------cCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPH----DVLIS------------------------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~----~L~ls------------------------------------~~l~~L~~L~ls~N~l~ 117 (138)
..|+|. .+|+.+..... .+..+ .++.+|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999986 77775433222 11111 45677888888888777
Q ss_pred ---------CCCCcEEEccCCeeeecCCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+..|+.|+||+|+++. +|.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~-Lp~ 424 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTT-LPD 424 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhh-hhH
Confidence 3567788888888875 653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=2.1e-11 Score=99.34 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=66.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|+. +|..+ . .+|++|++++ ++++ ..+ ..+|+.|++++|+++ .+|..+. .+|++|++
T Consensus 201 L~~L~Ls~N~Lts-LP~~l--~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 201 ITTLILDNNELKS-LPENL--Q---GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CcEEEecCCCCCc-CChhh--c---cCCCEEECCCCccccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 5789999999985 66644 3 6899999999 9988 333 247999999999997 6676553 47999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEec
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++|+++ .+|..+..--..|+++
T Consensus 270 s~N~L~-~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 270 FHNKIS-CLPENLPEELRYLSVY 291 (754)
T ss_pred cCCccC-ccccccCCCCcEEECC
Confidence 999998 6787654210166665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=5e-13 Score=100.03 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=54.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEccc-CccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSF-DLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++++|..|+|+.+.|.+|+.+ ++|+.||||+ +|+. ++|.++++|..|-+-+ |+|+......|..+.+++.|.
T Consensus 70 veirLdqN~I~~iP~~aF~~l---~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTL---HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred eEEEeccCCcccCChhhccch---hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 468899999998888899999 9999999999 8887 8899998887765555 888644333444444333333
Q ss_pred e
Q 046299 77 L 77 (138)
Q Consensus 77 l 77 (138)
+
T Consensus 147 l 147 (498)
T KOG4237|consen 147 L 147 (498)
T ss_pred c
Confidence 3
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=8.1e-13 Score=96.49 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=76.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+++|||+|.|+. +.+++.-+ +.++.|++|+ .+.. ..+..+++|+.||+|+|.++. +...-..+-+.++|.++
T Consensus 286 LtelDLS~N~I~~-iDESvKL~---Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLA---PKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhh-hhhhhhhc---cceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 4566777777753 55666666 6777777777 6666 556667777777777776642 11111233456677777
Q ss_pred CCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
.|.+. .+ ..++ .+-+|..||+++|+|. .+.|+.+.|.+|++.+ +|
T Consensus 361 ~N~iE-~L-SGL~----------KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~v 415 (490)
T KOG1259|consen 361 QNKIE-TL-SGLR----------KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SV 415 (490)
T ss_pred hhhHh-hh-hhhH----------hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cc
Confidence 77664 11 1122 2445899999999998 5778889999999987 55
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=6.4e-11 Score=96.56 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=65.8
Q ss_pred CcEEEccCccccCcCCccccCCC-------------C-CCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFP-------------S-FSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS 64 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~-------------~-~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~ 64 (138)
|++|++++|+|+.. |..+..+. . ..+|+.|++++ +++. .. ..++|+.|++++|++++ +|.
T Consensus 244 Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~ 319 (788)
T PRK15387 244 LRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPA 319 (788)
T ss_pred CcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--cccccceeECCCCcccc-CCC
Confidence 56777777777763 33221110 0 02344555555 5544 21 23556666666666653 221
Q ss_pred CCc-----------------cccCcceEEecCCcCCCCCCCCCCCCCCeEEec--------cCCCceeEEEeeCCccc--
Q 046299 65 GWI-----------------PPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS--------SFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 65 ~~~-----------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls--------~~l~~L~~L~ls~N~l~-- 117 (138)
... ...+|++|++++|+|+ .+|.....+. .|+++ ....+|+.|++++|+|+
T Consensus 320 lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~-~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~L 397 (788)
T PRK15387 320 LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELY-KLWAYNNRLTSLPALPSGLKELIVSGNRLTSL 397 (788)
T ss_pred CcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccc-eehhhccccccCcccccccceEEecCCcccCC
Confidence 100 0125777777777776 4554332222 22222 22235666777777666
Q ss_pred ---CCCCcEEEccCCeeeecCC
Q 046299 118 ---SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---~~~L~~L~Ls~N~l~g~iP 136 (138)
+.+|+.|++++|+|++ +|
T Consensus 398 P~l~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 398 PVLPSELKELMVSGNRLTS-LP 418 (788)
T ss_pred CCcccCCCEEEccCCcCCC-CC
Confidence 3456666666666665 55
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=2.2e-13 Score=102.31 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=92.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L~l 77 (138)
|++||...|.+ +.+|+.++.+ .+|+.||+.. ++.. +.|.++..|++++++.|++. .+|.+.. .+.++..||+
T Consensus 185 L~~ld~~~N~L-~tlP~~lg~l---~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 185 LKHLDCNSNLL-ETLPPELGGL---ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHhcccchhhh-hcCChhhcch---hhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 46778888888 5688888888 8888888888 8888 88888888888998888885 4555444 5677888999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--C-----CCCcEEEccCCeee
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--S-----QSWTIIDLGINKFS 132 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--~-----~~L~~L~Ls~N~l~ 132 (138)
.+|+++ ++|..+..+.+ |.+||+|+|.|+ | -+|+.|-+.+|++.
T Consensus 260 RdNklk-e~Pde~clLrs----------L~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRS----------LERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred cccccc-cCchHHHHhhh----------hhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 999987 88888776655 999999999999 3 25667777788764
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.19 E-value=4.9e-11 Score=67.85 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCcc
Q 046299 46 SRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQY 116 (138)
Q Consensus 46 ~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l 116 (138)
++|++|++++|+++...+..|..+.+|++|++++|+++...|..|.++++ |++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~----------L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN----------LRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT----------ESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC----------CCEEeCcCCcC
Confidence 45677777777776555566666777777777777777555556665544 77777777764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=5e-12 Score=93.03 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=80.4
Q ss_pred CcEEEccCccccC------cCCccccCCCCCCCccEEEccc-cccc---ccccCC---CCCCEEEcccCccce----eCC
Q 046299 1 MKDLFVGNNRLNG------TLTKASDSFPSFSFWTSLIILR-KLAG---DIITNL---SRLAHMDLSFDLRTF----NFS 63 (138)
Q Consensus 1 L~~L~Ls~N~l~~------~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l---~~L~~L~ls~N~l~~----~~~ 63 (138)
+++++++++.+.+ .++..+..+ ++|+.|++++ .+.+ ..+..+ ++|++|++++|+++. .+.
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKG---CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhc---CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4567777777752 233456666 8889999988 7764 334333 448999999988762 111
Q ss_pred CCCccc-cCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc---
Q 046299 64 SGWIPP-FQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV--- 117 (138)
Q Consensus 64 ~~~~~~-~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~--- 117 (138)
..+... .+|++|++++|.+++. ++..+..+.. +++++ ...++|++|++++|.++
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 222333 5788888888888732 2223433333 56655 12346777777777765
Q ss_pred ----------CCCCcEEEccCCeeee
Q 046299 118 ----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ----------~~~L~~L~Ls~N~l~g 133 (138)
.++|++|++++|.+++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCch
Confidence 2457777777777653
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=1.5e-11 Score=84.02 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=36.7
Q ss_pred ccCccccCcCCccccCCCCCCCccEEEccc-cccc-cccc-CCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcC
Q 046299 6 VGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIIT-NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKM 82 (138)
Q Consensus 6 Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~-~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l 82 (138)
+..+.|.. +| .+.+. .+++.|+|.+ .++. +.++ .+.+|+.|++++|.++. ++ .+..+.+|++|++++|++
T Consensus 4 lt~~~i~~-~~-~~~n~---~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 4 LTANMIEQ-IA-QYNNP---VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS--
T ss_pred cccccccc-cc-ccccc---cccccccccccccccccchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCC
Confidence 44455532 33 24455 7899999999 9998 7776 58999999999999973 33 466678999999999999
Q ss_pred CCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 83 GPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 83 ~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+ .+++.+.. .+++|+.|++++|+|. .++|+.|++.+|+++.
T Consensus 77 ~-~i~~~l~~---------~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 77 S-SISEGLDK---------NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --S-CHHHHH---------H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred C-ccccchHH---------hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 8 55443321 2345999999999998 5889999999999874
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=1e-10 Score=66.49 Aligned_cols=56 Identities=25% Similarity=0.182 Sum_probs=30.1
Q ss_pred CccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcC
Q 046299 27 FWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKM 82 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l 82 (138)
+|++|++++ +++. ..|.++++|++|++++|.++...+..|..+.+|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 344455554 4444 3455555555555555555555555555555555555555543
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.12 E-value=4.9e-10 Score=95.41 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=74.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|++.++.+. .+|..| .. .+|+.|++++ ++.. ..+..+++|++++++++.....+| .+..+.+|++|+++
T Consensus 592 r~L~~~~~~l~-~lP~~f-~~---~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 592 RLLRWDKYPLR-CMPSNF-RP---ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred EEEEecCCCCC-CCCCcC-Cc---cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 45566666553 345544 34 5666666666 6555 445556666666666554333444 24445566666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.....+|..+..+++ .|+++ ..+++|+.|++++|... +.+|+.|++++|.++. +|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-cc
Confidence 65544456666655555 55554 13556778888777533 4577788888887764 55
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.12 E-value=6e-10 Score=94.87 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=36.0
Q ss_pred CcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCcc-c-----CCCCcEEEccCCee
Q 046299 71 QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQY-V-----SQSWTIIDLGINKF 131 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l-~-----~~~L~~L~Ls~N~l 131 (138)
+|++|++++|...+.+|.+++.+++ .|+++ ..+++|+.|++++|.. . +.+++.|+|++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 4555566665554556666666655 56555 1245566666665432 2 34566666666666
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
+. +|
T Consensus 859 ~~-iP 862 (1153)
T PLN03210 859 EE-VP 862 (1153)
T ss_pred cc-Ch
Confidence 54 44
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=4.6e-11 Score=90.84 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=74.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-cc-ccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DI-ITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~-~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|++++|.+.. +|..++.+ ++|+.|++++ +++. .. .+..++|+.|++++|+++ .+|........|+++.++
T Consensus 143 ~~L~l~~N~i~~-l~~~~~~l---~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 143 KELDLSDNKIES-LPSPLRNL---PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred ccccccccchhh-hhhhhhcc---ccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 455566666532 44455555 6666666666 6555 22 225556666666666663 344332233346666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.+. ..+..+..+.. .+.++ +.++.+++|++++|+++ ..+++.+|+++|.+...+|
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence 66432 33333333333 22222 55677899999999988 3788899999998876444
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=2.2e-10 Score=86.13 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=73.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.|+|++|+|+++-+.+|.++ ..++.|+|.. ++.. ..|.++..|+.|++.+|+|+...|.+|....+|.+|.
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~---a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGA---AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ceEeccCCCccchhhhhhhcch---hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 6789999999999999999999 9999999999 8887 8899999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 046299 77 LGSCKMG 83 (138)
Q Consensus 77 l~~n~l~ 83 (138)
+-.|.+.
T Consensus 353 l~~Np~~ 359 (498)
T KOG4237|consen 353 LLSNPFN 359 (498)
T ss_pred hccCccc
Confidence 9888764
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=3.7e-11 Score=93.61 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=85.8
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
.+.|.+|.+. .+|.+++++ ..|+++|++. +++. ..++.|+ |+.|-+++|+++ .+|..++....|..|+.+.
T Consensus 102 ~liLy~n~~r-~ip~~i~~L---~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 102 SLILYHNCIR-TIPEAICNL---EALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHhccce-ecchhhhhh---hHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence 3456667773 477777777 7777777777 7776 5555554 777777777774 5666666556677777777
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
|.+. .+|..++.+.+ .+.+. . .-.|..||+|+|+++ ++.|++|-|.+|.++.
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 7776 66666666555 22222 2 224888999999998 5789999999999876
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=4.2e-10 Score=85.58 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=98.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCC-CccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFS-FWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~-~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++.+|.++. +|+..+.+ . +|+.|++++ ++.. ..+..+++|+.|++++|+++ .+|........|+.|+
T Consensus 118 l~~L~l~~n~i~~-i~~~~~~~---~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 118 LTSLDLDNNNITD-IPPLIGLL---KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred eeEEecCCccccc-Cccccccc---hhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 4678899999975 66667666 6 899999999 8888 58899999999999999996 4555444667899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+++|++. .+|........ +++++ ..+.++..+.+++|++. +..+++|++++|+++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 9999998 77775433332 33333 56677788888888875 5679999999999875
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=1.8e-11 Score=95.36 Aligned_cols=128 Identities=21% Similarity=0.310 Sum_probs=106.4
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
..|++.|++. .+|..++.+ ..|+.+.+.. .+.. ..++++..|+++|++.|+++ ..|..+..+ -|+.|-+++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f---~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAF---VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhccccccc-cCchHHHHH---HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEec
Confidence 4689999996 589999888 8899999988 8887 88999999999999999997 445444333 589999999
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--C-----CCCcEEEccCCeeeecCCCC
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--S-----QSWTIIDLGINKFSGQYPRE 138 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--~-----~~L~~L~Ls~N~l~g~iP~~ 138 (138)
|+++ .+|+.++.+.. .+|.+ +.+.+|+.|+++.|++. | -.|..||+|.|+++- ||.|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~-iPv~ 229 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISY-LPVD 229 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceee-cchh
Confidence 9998 89999996665 77776 66788888899999887 2 457899999999997 8854
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=7.3e-10 Score=81.25 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=75.9
Q ss_pred CCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEecc
Q 046299 25 FSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISS 101 (138)
Q Consensus 25 ~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~ 101 (138)
+..|+.+|||+ .++. ++..-.+.++.|++|+|.+... .++..+.+|+.||+++|.++ .+-.|=.++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG------- 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLG------- 352 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhc-------
Confidence 37789999999 8887 6777788999999999988532 23566778999999999987 5555544443
Q ss_pred CCCceeEEEeeCCccc-------CCCCcEEEccCCeee
Q 046299 102 FQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFS 132 (138)
Q Consensus 102 ~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~ 132 (138)
+++.|.|+.|.|. .-+|..||+++|+|.
T Consensus 353 ---NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 353 ---NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ---CEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence 4999999999988 468999999999986
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.3e-08 Score=77.52 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred CCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCC--CCCCCCCC--e
Q 046299 26 SFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP--NPIPEMPH--D 96 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~--~ 96 (138)
+.|+.|.++. .++. .....+|+|+.|++..|...+.......-++.|++|++++|++- .++ ...+.++. .
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 5566666666 5555 34456667777777777422222222223446888888888876 444 22333333 2
Q ss_pred EEec------------------cCCCceeEEEeeCCccc
Q 046299 97 VLIS------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 97 L~ls------------------~~l~~L~~L~ls~N~l~ 117 (138)
+.++ ..+++|++|++..|+|.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3222 34567777777777775
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=3.7e-10 Score=90.48 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=82.2
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
..+.++|++.- +.+++.-+ +.++.|+|++ +++. +.+..+++|++||+++|.+. .+|..-....+|..|.+++|
T Consensus 168 ~a~fsyN~L~~-mD~SLqll---~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 168 TASFSYNRLVL-MDESLQLL---PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhcchhhHHh-HHHHHHHH---HHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence 34667777753 56677777 8899999999 9998 88888999999999999985 44432222235899999999
Q ss_pred cCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeee
Q 046299 81 KMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFS 132 (138)
Q Consensus 81 ~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~ 132 (138)
.++ .+ ..+.+ +.+|+.||+++|-|+ ...|+.|+|.+|.+-
T Consensus 243 ~l~-tL-~gie~----------LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALT-TL-RGIEN----------LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHH-hh-hhHHh----------hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 887 21 11222 445888899998887 356778888888764
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=2.1e-08 Score=74.31 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=36.0
Q ss_pred CcEEEccCccccCcCCccccCC-CCCCCccEEEccc-cccc----------------ccccCCCCCCEEEcccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF-PSFSFWTSLIILR-KLAG----------------DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l-~~~~~L~~L~Ls~-~l~~----------------~~~~~l~~L~~L~ls~N~l 58 (138)
|+++|||+|.|...-++.+..+ .+|..|++|+|.+ .+.- .-.+.-++|+++..+.|++
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 5788999998854444444322 2237788888877 5543 1234455677777777776
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3e-08 Score=76.22 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|++.+|+|.+ +...+..+ ++|++|++++ +++. ..+..++.|+.|++++|.++. + ..+..+..|+.++++
T Consensus 97 l~~l~l~~n~i~~-i~~~l~~~---~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 97 LEALDLYDNKIEK-IENLLSSL---VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLS 170 (414)
T ss_pred eeeeeccccchhh-cccchhhh---hcchheeccccccccccchhhccchhhheeccCcchh-c-cCCccchhhhcccCC
Confidence 4578888888865 33335667 8888888888 8888 777888888888888888852 2 233446678888888
Q ss_pred CCcCCCCCCCC-CCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCC--CcEEEccCCeeee
Q 046299 79 SCKMGPGFPNP-IPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQS--WTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~-~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~--L~~L~Ls~N~l~g 133 (138)
+|.++. +... ...+.. .+++. ..+..+..+++..|+++ ... ++.+++++|++..
T Consensus 171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 171 YNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 888873 3331 222222 22222 22233444466666666 112 6788888887764
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=2.1e-07 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCCEEEcccCccceeCCCCCccccCcceEEecCCcCC
Q 046299 47 RLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMG 83 (138)
Q Consensus 47 ~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~ 83 (138)
+|++|++++|+|+ .+|+.+..+.+|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666665 34444556666666666666665
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.6e-08 Score=74.53 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=47.6
Q ss_pred cEEEccCccccCcCC--ccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCC-ccccCc
Q 046299 2 KDLFVGNNRLNGTLT--KASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGW-IPPFQL 72 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p--~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~L 72 (138)
++..|.+..+. ..+ +-...+ ++++.||||. -+.. .....+++|+.|+++.|++........ ....+|
T Consensus 124 ~~IsLdn~~V~-~~~~~~~~k~~---~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 124 REISLDNYRVE-DAGIEEYSKIL---PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred hheeecCcccc-ccchhhhhhhC---CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 34455555552 222 234456 8888888888 6665 445678888888888888753332221 123467
Q ss_pred ceEEecCCcCC
Q 046299 73 NTIILGSCKMG 83 (138)
Q Consensus 73 ~~L~l~~n~l~ 83 (138)
+.|.+++|.++
T Consensus 200 K~L~l~~CGls 210 (505)
T KOG3207|consen 200 KQLVLNSCGLS 210 (505)
T ss_pred heEEeccCCCC
Confidence 77777777776
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=8.6e-08 Score=71.18 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CCCCCccccCcceEEecCCcCCCCCCCCCCC-
Q 046299 26 SFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FSSGWIPPFQLNTIILGSCKMGPGFPNPIPE- 92 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~- 92 (138)
+.|+.+.+++ .+.. ..|..++.|+.||+.+|-|+.. +...+...++|+++++++|.+...-...+.+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 5566666655 4433 3455566666666666655411 1122222335666666666654221111111
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc-------------CCCCcEEEccCCee
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV-------------SQSWTIIDLGINKF 131 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l 131 (138)
+. ...++|+.+.+.+|.|+ .+.|+.|+|++|.+
T Consensus 265 l~------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LK------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred Hh------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 00 34678999999999998 37899999999998
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.21 E-value=7.4e-07 Score=63.86 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccC--ccceeCCCCCccccCcceEEecCCcCCCCCCCCC
Q 046299 15 LTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFD--LRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPI 90 (138)
Q Consensus 15 ~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 90 (138)
+....-.. ..|+.+.+.+ .++. ..|..+++|+.|.+|.| ++++.++.....+.+|+++++++|++. ++..+
T Consensus 35 ~~gl~d~~---~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl 109 (260)
T KOG2739|consen 35 LGGLTDEF---VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTL 109 (260)
T ss_pred cccccccc---cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--ccccc
Confidence 44444445 7888888888 8888 88999999999999999 666555554455579999999999996 35665
Q ss_pred CCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 91 PEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 91 ~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..++. +.+|..|++.+|..+
T Consensus 110 ~pl~~-------l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKE-------LENLKSLDLFNCSVT 129 (260)
T ss_pred chhhh-------hcchhhhhcccCCcc
Confidence 55543 456788888888766
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.9e-06 Score=45.69 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=17.4
Q ss_pred CccEEEccc-cccc-cc-ccCCCCCCEEEcccCccc
Q 046299 27 FWTSLIILR-KLAG-DI-ITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~-~~-~~~l~~L~~L~ls~N~l~ 59 (138)
+|++|++++ +++. +. +++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555 5555 33 555566666666666554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=9.8e-08 Score=73.43 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=92.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.|+... .+..+ +.|+.|++++ .++. ..+..+++|+.+++++|+++..-+.....+.+++.++++
T Consensus 120 L~~L~ls~N~I~~i~--~l~~l---~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 120 LQVLDLSFNKITKLE--GLSTL---TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred chheecccccccccc--chhhc---cchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 678999999997643 36677 8899999999 9999 888889999999999999974433103456689999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCc--eeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQY--VFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~--L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+|.+. .+ .++..+.. .+++. ..... |+.+++++|.+. ...+..+|+.+|++..
T Consensus 195 ~n~i~-~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 195 GNSIR-EI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred CCchh-cc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 99986 22 22222222 22222 12222 889999999988 3678889999998865
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=1.1e-06 Score=71.70 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=76.6
Q ss_pred CcEEEccCccc-cCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRL-NGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l-~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++||+++... +...|..++.+ +|.|+.|.+++ .+.. ....++++|..||+|+.+++-. ..+..+.+|+.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~--LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTM--LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred hhhcCccccchhhccHHHHHhhh--CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56788888654 22234455543 29999999999 8876 4567899999999999998522 45667778999
Q ss_pred EEecCCcCCCCCC--CCCCCCCC--eEEec------------------cCCCceeEEEeeCCccc
Q 046299 75 IILGSCKMGPGFP--NPIPEMPH--DVLIS------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 75 L~l~~n~l~~~~p--~~~~~l~~--~L~ls------------------~~l~~L~~L~ls~N~l~ 117 (138)
|.+.+=.+. ... ..+..+++ +||+| ..++.|+.||.|+..+.
T Consensus 200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCC-chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888877775 222 23556666 66666 34566666666666555
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=4.2e-06 Score=60.97 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=86.2
Q ss_pred CcEEEccCccccCcCCc----cccCCCCCCCccEEEccccccc--------------ccccCCCCCCEEEcccCccceeC
Q 046299 1 MKDLFVGNNRLNGTLTK----ASDSFPSFSFWTSLIILRKLAG--------------DIITNLSRLAHMDLSFDLRTFNF 62 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~----~~~~l~~~~~L~~L~Ls~~l~~--------------~~~~~l~~L~~L~ls~N~l~~~~ 62 (138)
++.++||+|-|.....+ .+.+- .+|+..+++.-++| ..+.+|++|+..++|+|-|....
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~---~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANV---RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhh---cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46789999999544333 44556 88999999884444 45778999999999999997666
Q ss_pred CCCC----ccccCcceEEecCCcCCCCCCC-CCC----CC---------CC--eEEec----------------cCCCce
Q 046299 63 SSGW----IPPFQLNTIILGSCKMGPGFPN-PIP----EM---------PH--DVLIS----------------SFQQYV 106 (138)
Q Consensus 63 ~~~~----~~~~~L~~L~l~~n~l~~~~p~-~~~----~l---------~~--~L~ls----------------~~l~~L 106 (138)
|+.+ .....|.+|.+.+|.+. .+.. .++ ++ +. +++.. ..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 6543 34457999999999986 3322 122 11 11 22222 111466
Q ss_pred eEEEeeCCccc--------------CCCCcEEEccCCeee
Q 046299 107 FRVDIYFQQYV--------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 107 ~~L~ls~N~l~--------------~~~L~~L~Ls~N~l~ 132 (138)
+.+.+..|.|. ..+|+.||+.+|-|+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77777777776 367888888888776
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=1.3e-05 Score=55.92 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCcc-ccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIP-PFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.+...+||++ .+.. ..|..++.|.+|.+++|+|+..-| .+.. ..+|..|.+.+|.|. .+-+ +..+ ..
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~-~l~d-l~pL-------a~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQ-ELGD-LDPL-------AS 111 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchh-hhhh-cchh-------cc
Confidence 5778889988 8887 889999999999999999975444 3333 346999999999986 3222 1111 23
Q ss_pred CCceeEEEeeCCccc------------CCCCcEEEccC
Q 046299 103 QQYVFRVDIYFQQYV------------SQSWTIIDLGI 128 (138)
Q Consensus 103 l~~L~~L~ls~N~l~------------~~~L~~L~Ls~ 128 (138)
+++|++|.+-+|.++ .++++.||.+.
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 567999999999888 57888888764
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=1.4e-07 Score=62.13 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred ccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccc-cCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 28 WTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPP-FQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 28 L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
+..++|++ ++.. ..+.....|+..++++|.+. .+|+.|... +..+.+++++|.++ .+|.++..++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a----- 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA----- 101 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH-----
Confidence 44455555 4442 33445555666677777764 444444333 25667777777776 66666655444
Q ss_pred cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 101 SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|+.++++.|.+. ..++..||..+|.+.
T Consensus 102 -----Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 102 -----LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -----hhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 777777777666 244555555555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=1.8e-07 Score=75.45 Aligned_cols=95 Identities=15% Similarity=0.009 Sum_probs=71.4
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
..|...+.++ .+.. .++.-++.|+.|+|++|+++..- .+..+.+|++||+++|.+. .+|.. +. .+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l-~~--------~g 231 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQL-SM--------VG 231 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-ccccc-ch--------hh
Confidence 3455556666 6655 66677888999999999986332 5667778999999999997 56542 11 11
Q ss_pred CCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+ +|+.|.+++|.++ .++|+.||+++|-|.+
T Consensus 232 c-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred h-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence 2 3999999999998 6889999999999876
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=2.9e-06 Score=55.93 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=48.7
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--cccc-CCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIIT-NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~-~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
.+||+.+.+ +.+++....+..-..|+..++++ .+.. ..|. ..+-++.+++++|.++ .+|..+..++.|+.|+++
T Consensus 31 ~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence 355666655 33444443331114455556666 6655 3332 3345666666666664 555556666666666666
Q ss_pred CCcCCCCCCCCCCCCCC
Q 046299 79 SCKMGPGFPNPIPEMPH 95 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~ 95 (138)
.|.+. ..|..+..+.+
T Consensus 109 ~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 109 FNPLN-AEPRVIAPLIK 124 (177)
T ss_pred cCccc-cchHHHHHHHh
Confidence 66665 55555544433
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00032 Score=54.10 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=70.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc--ccccCCCCCCEEEcccC-ccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG--DIITNLSRLAHMDLSFD-LRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~--~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~~~~L~~L 75 (138)
++.|++++|.++. +| .++ .+|+.|++++ .++. ..+ .++|++|++++| .+. .+|. +|+.|
T Consensus 54 l~~L~Is~c~L~s-LP----~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 54 SGRLYIKDCDIES-LP----VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred CCEEEeCCCCCcc-cC----CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 4678888888754 45 231 4688888876 6555 223 247888888887 443 3332 46777
Q ss_pred EecCCcCC--CCCCCCCCCCCC----eEEec---cCC-CceeEEEeeCCccc------CCCCcEEEccCCe
Q 046299 76 ILGSCKMG--PGFPNPIPEMPH----DVLIS---SFQ-QYVFRVDIYFQQYV------SQSWTIIDLGINK 130 (138)
Q Consensus 76 ~l~~n~l~--~~~p~~~~~l~~----~L~ls---~~l-~~L~~L~ls~N~l~------~~~L~~L~Ls~N~ 130 (138)
++..+... +.+|..+..+.- ..... ..+ ++|++|++++|... |.+|+.|+++.|.
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 77766532 356665543321 00000 112 47889999888765 6789999988763
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=2.5e-05 Score=65.39 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.6
Q ss_pred CCccEEEccc-c--ccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eE
Q 046299 26 SFWTSLIILR-K--LAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DV 97 (138)
Q Consensus 26 ~~L~~L~Ls~-~--l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L 97 (138)
++|++|-+.. . +.. ..|..++.|++||+++|.=-+.+|..++.+.+|++|++++..+. .+|..+++++. +|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 5566666655 3 333 44777888888888887655677888877888888888888887 78888877777 55
Q ss_pred Eec------------cCCCceeEEEeeCCc
Q 046299 98 LIS------------SFQQYVFRVDIYFQQ 115 (138)
Q Consensus 98 ~ls------------~~l~~L~~L~ls~N~ 115 (138)
++. ..+.+|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 555 225566666665544
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.60 E-value=2.5e-05 Score=65.40 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=51.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|||++|.=-+.+|+.++.+ -+|++|++++ .++. ..++++..|.+|++..+.-...+|.....+.+|++|.+
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~L---i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGEL---VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred eEEEECCCCCccCcCChHHhhh---hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 4567777765556677777777 7777777777 7776 66777777777777776543334444444666777766
Q ss_pred cCCc
Q 046299 78 GSCK 81 (138)
Q Consensus 78 ~~n~ 81 (138)
..-.
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 5443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=2.3e-05 Score=64.06 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=76.5
Q ss_pred CCccEEEccc--cccc----ccccCCCCCCEEEcccCccc-eeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--e
Q 046299 26 SFWTSLIILR--KLAG----DIITNLSRLAHMDLSFDLRT-FNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--D 96 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~----~~~~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~ 96 (138)
.+|++||+++ .+.. ..-..+|+|+.|.+++=.+. ..+...+.+.++|..||+++.+++ .+ ..++++++ +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 5789999988 4443 33456899999999886663 122233445668999999999997 33 44566666 3
Q ss_pred EEec-------------cCCCceeEEEeeCCccc---------------CCCCcEEEccCCeeee
Q 046299 97 VLIS-------------SFQQYVFRVDIYFQQYV---------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 97 L~ls-------------~~l~~L~~L~ls~N~l~---------------~~~L~~L~Ls~N~l~g 133 (138)
|.+. -.+++|+.||+|..+.. .+.|+.||.|+..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 3333 56899999999988765 5799999999887764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=7.7e-05 Score=55.14 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
++.+..|+|+.|+|. .+.+..|.++.|++..
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 445556666666665 3566666666666544
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=7.8e-06 Score=60.27 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=14.5
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEccc
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSF 55 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~ 55 (138)
.+|+.|.+.+ ++.+ ..++.-.+|+.++++.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 4455555554 4444 3444444455555544
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.22 E-value=0.00012 Score=32.71 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.9
Q ss_pred CcEEEccCccccCcCCccccCC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF 22 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l 22 (138)
|++||+++|+|+ .+|++|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT-
T ss_pred ccEEECCCCcCE-eCChhhcCC
Confidence 689999999998 678777654
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.21 E-value=0.00015 Score=32.40 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=10.0
Q ss_pred cceEEecCCcCCCCCCCCCC
Q 046299 72 LNTIILGSCKMGPGFPNPIP 91 (138)
Q Consensus 72 L~~L~l~~n~l~~~~p~~~~ 91 (138)
|++|++++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4555443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.13 E-value=0.0025 Score=49.32 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCccEEEccc-cccc-ccccCCC-CCCEEEcccC-ccceeCCCCCccccCcceEEecCC-cCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLAG-DIITNLS-RLAHMDLSFD-LRTFNFSSGWIPPFQLNTIILGSC-KMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~-~L~~L~ls~N-~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~~L~ls 100 (138)
.+++.|++++ .++. + .++ +|+.|.++++ .+ ..+|..+ +.+|++|++++| .+. .+|..+.. |+++
T Consensus 52 ~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~----L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRS----LEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-ccccccce----EEeC
Confidence 8899999999 8887 5 333 6999999874 44 3556544 248999999999 565 77876653 3333
Q ss_pred --------cCCCceeEEEeeCCc-cc--------CCCCcEEEccCCeee
Q 046299 101 --------SFQQYVFRVDIYFQQ-YV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 101 --------~~l~~L~~L~ls~N~-l~--------~~~L~~L~Ls~N~l~ 132 (138)
.-.++|+.|.+.+++ .. |++|++|++++|...
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 222467888775432 11 678999999988865
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0018 Score=45.38 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=67.2
Q ss_pred ccEEEccc-cccc-ccccC-CCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCC
Q 046299 28 WTSLIILR-KLAG-DIITN-LSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQ 104 (138)
Q Consensus 28 L~~L~Ls~-~l~~-~~~~~-l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~ 104 (138)
=+.+++.+ ++.. ..++- +.+...+|+++|.+. . -..+..+..|.+|.+.+|.|+ .+.+.+.. .++
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt-~I~p~L~~---------~~p 88 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRIT-RIDPDLDT---------FLP 88 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchh-h-cccCCCccccceEEecCCcce-eeccchhh---------hcc
Confidence 44555555 5544 22322 346788999999984 2 235566778999999999999 55555544 245
Q ss_pred ceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 105 YVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 105 ~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+|..|.+.+|.|. .+.|++|-+-+|+.+.
T Consensus 89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 6999999999998 4789999999998753
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=2.7e-05 Score=57.46 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=39.4
Q ss_pred CCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 26 SFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
+.|+++|||. .++. ..++.+.+|+.|.+-++++.-.+-..+....+|+.++++.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4699999999 8887 66788999999999999986444333444445555555544
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.35 E-value=0.0012 Score=48.42 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCccEEEccc-cccc-------ccccCCCCCCEEEcccCccce---e-------CCCCCccccCcceEEecCCcCCCCCC
Q 046299 26 SFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTF---N-------FSSGWIPPFQLNTIILGSCKMGPGFP 87 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~---~-------~~~~~~~~~~L~~L~l~~n~l~~~~p 87 (138)
..+..++||+ -|.. ..+.+-.+|+..++|.-.... . +-+.+..+++|+..+++.|.|...+|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 7788899998 7766 456677788888887653311 1 11345567799999999999998888
Q ss_pred CCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 88 NPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 88 ~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+.++.+-+ ..+.|++|.+++|.+-
T Consensus 110 e~L~d~is------~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLIS------SSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHh------cCCCceeEEeecCCCC
Confidence 87665433 2234666667666654
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0012 Score=49.05 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=9.6
Q ss_pred CCCceeEEEeeCCcc
Q 046299 102 FQQYVFRVDIYFQQY 116 (138)
Q Consensus 102 ~l~~L~~L~ls~N~l 116 (138)
.++.++.|.+|.|.+
T Consensus 144 ~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL 158 (418)
T ss_pred cchhhhhhhhccchh
Confidence 445577777777744
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0038 Score=45.10 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=52.1
Q ss_pred CCCCCCEEEcccCccceeCCCCCccccCcceEEecCC--cCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----
Q 046299 44 NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC--KMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---- 117 (138)
Q Consensus 44 ~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---- 117 (138)
.+..|+.+.+.+-.++.. ..+-.+.+|++|.++.| ++.+.++..... +++|++++++.|+|.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~----------~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK----------APNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh----------CCceeEEeecCCccccccc
Confidence 344555566665555421 23445668999999999 555444443333 356999999999998
Q ss_pred ------CCCCcEEEccCCeeee
Q 046299 118 ------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~g 133 (138)
..+|..||+.+|.-+.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcchhhhhcccCCccc
Confidence 3678889998886553
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.09 E-value=0.0028 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=7.7
Q ss_pred CCcEEEccCCeeeecCC
Q 046299 120 SWTIIDLGINKFSGQYP 136 (138)
Q Consensus 120 ~L~~L~Ls~N~l~g~iP 136 (138)
+|+.|++++|+|+. +|
T Consensus 2 ~L~~L~l~~n~L~~-lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS-LP 17 (17)
T ss_dssp T-SEEEETSS--SS-E-
T ss_pred ccCEEECCCCCCCC-Cc
Confidence 56667777777654 44
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.01 E-value=0.089 Score=33.33 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=42.2
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCC-CCCC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPN-PIPE 92 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~ 92 (138)
..|.++ ++|+.+.+...++. ..|.++++|+.+.+..+ +...-...|..+.+++.+.+.+ .+. .++. .+..
T Consensus 6 ~~F~~~---~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~ 79 (129)
T PF13306_consen 6 NAFYNC---SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSN 79 (129)
T ss_dssp TTTTT----TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT
T ss_pred HHHhCC---CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccc
Confidence 345566 77888877652222 77888888888888775 5444445566666788888865 433 2333 3443
Q ss_pred CCCeEEeccCCCceeEEEeeCC
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQ 114 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N 114 (138)
+.+ ++.+++..+
T Consensus 80 ~~~----------l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTN----------LKNIDIPSN 91 (129)
T ss_dssp -TT----------ECEEEETTT
T ss_pred ccc----------ccccccCcc
Confidence 444 666666544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.53 E-value=0.089 Score=33.32 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=49.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.+.+.. .+..+...+|..+ ++++.+.+...+.. ..|.++++++.+.+.. .+.......|..+.+++.+.+
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~---~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNC---TSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT----TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCEEEECC-CeeEeChhhcccc---cccccccccccccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 34556653 4555555667777 89999998763333 7899998899999976 443344456666788999999
Q ss_pred cCCcCCCCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPIPEM 93 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l 93 (138)
..+ +...-...+...
T Consensus 89 ~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC 103 (129)
T ss_dssp TTT--BEEHTTTTTT-
T ss_pred Ccc-ccEEchhhhcCC
Confidence 775 542223344443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.001 Score=48.92 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=47.3
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC--CCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS--GWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~~~~L~~L~l~ 78 (138)
.|+.-++.|+.+ .....+ +.|++|.||- +++. ..|..+++|++|+|..|.|. .+.+ .+.++++|+.|++.
T Consensus 23 KLNcwg~~L~DI--sic~kM---p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 23 KLNCWGCGLDDI--SICEKM---PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhcccCCCccHH--HHHHhc---ccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhc
Confidence 455556655442 223456 6777777777 7777 77777777777777777763 1111 22345567777777
Q ss_pred CCcCCCCCC
Q 046299 79 SCKMGPGFP 87 (138)
Q Consensus 79 ~n~l~~~~p 87 (138)
.|.=.|.-+
T Consensus 97 ENPCc~~ag 105 (388)
T KOG2123|consen 97 ENPCCGEAG 105 (388)
T ss_pred cCCcccccc
Confidence 776554433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.00046 Score=50.73 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=53.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCC
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQ 103 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l 103 (138)
.+.+.|+..+ .+.+ .....|+.|++|.||-|.|+..- .+..+++|++|+|..|.|. .+.+- .-+ .++
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL-~YL-------knl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDEL-EYL-------KNL 87 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHH-HHH-------hcC
Confidence 4556677777 7777 66678888899999999886332 3456778889999888886 33221 111 234
Q ss_pred CceeEEEeeCCcc
Q 046299 104 QYVFRVDIYFQQY 116 (138)
Q Consensus 104 ~~L~~L~ls~N~l 116 (138)
++|+.|.|..|.=
T Consensus 88 psLr~LWL~ENPC 100 (388)
T KOG2123|consen 88 PSLRTLWLDENPC 100 (388)
T ss_pred chhhhHhhccCCc
Confidence 5577777777753
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=94.70 E-value=0.021 Score=26.53 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=11.1
Q ss_pred CCCcEEEccCCeeeecCCC
Q 046299 119 QSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 119 ~~L~~L~Ls~N~l~g~iP~ 137 (138)
.+|+.|++++|+++. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~-LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS-LPE 19 (26)
T ss_pred cccceeecCCCcccc-Ccc
Confidence 456666666666665 553
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.15 E-value=0.032 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=6.7
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.15 E-value=0.032 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=6.7
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.49 E-value=0.0019 Score=46.42 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.+-+.||++. ++.. ..|+.++.+..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~------- 112 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH------- 112 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC-------
Confidence 7777788777 6665 67777777888888888774 56666666666777777777776 67777766554
Q ss_pred CCceeEEEeeCCccc
Q 046299 103 QQYVFRVDIYFQQYV 117 (138)
Q Consensus 103 l~~L~~L~ls~N~l~ 117 (138)
++++++-.|.+.
T Consensus 113 ---~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 ---PKKNEQKKTEFF 124 (326)
T ss_pred ---cchhhhccCcch
Confidence 666666666655
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.10 E-value=0.13 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=9.6
Q ss_pred CCCCCEEEcccCccc
Q 046299 45 LSRLAHMDLSFDLRT 59 (138)
Q Consensus 45 l~~L~~L~ls~N~l~ 59 (138)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777664
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.74 E-value=0.12 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=7.3
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.82 E-value=0.0043 Score=44.70 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--
Q 046299 40 DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 40 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-- 117 (138)
..+......+.||++.|++. .....|.-++.+..++++.|++. ..|+.++.+.. ++.+++..|..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e----------~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE----------TVNAASHKNNHSQQ 103 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH----------HHHHHhhccchhhC
Confidence 55677788899999999984 45556666778999999999997 78888876655 788888888887
Q ss_pred ------CCCCcEEEccCCeee
Q 046299 118 ------SQSWTIIDLGINKFS 132 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~ 132 (138)
.++++++++..|.|.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 367888888888764
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.23 E-value=0.39 Score=22.43 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=8.5
Q ss_pred CCCCEEEcccCcc
Q 046299 46 SRLAHMDLSFDLR 58 (138)
Q Consensus 46 ~~L~~L~ls~N~l 58 (138)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566777777766
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=0.05 Score=38.25 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=34.5
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCcccee--CCCCCccccCcceEEecCCc-CC
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFN--FSSGWIPPFQLNTIILGSCK-MG 83 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~--~~~~~~~~~~L~~L~l~~n~-l~ 83 (138)
..++.+|-++ .+.. +.+.+++.++.|.+.++.--.. +..--....+|+.|++++|. ||
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3577778777 6665 6677777777777766642100 00000123478888888774 54
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.74 E-value=0.68 Score=35.75 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=28.6
Q ss_pred CCccEEEccc--cccc----ccccCCCCCCEEEcccC-ccceeCC----CCCccccCcceEEecCCc
Q 046299 26 SFWTSLIILR--KLAG----DIITNLSRLAHMDLSFD-LRTFNFS----SGWIPPFQLNTIILGSCK 81 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~----~~~~~l~~L~~L~ls~N-~l~~~~~----~~~~~~~~L~~L~l~~n~ 81 (138)
+.|+.+.+.. .+.. .....++.|+.|+++++ ......+ .....+.+|+.++++++.
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 5666666665 4443 34455667777777652 1100111 111223456677777666
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.31 E-value=1.7 Score=35.06 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCccEEEccc-cccc-ccc----cCCCCCCEEEcccCccceeCCCCCc--cccCcceEEecCCcCC
Q 046299 26 SFWTSLIILR-KLAG-DII----TNLSRLAHMDLSFDLRTFNFSSGWI--PPFQLNTIILGSCKMG 83 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~----~~l~~L~~L~ls~N~l~~~~~~~~~--~~~~L~~L~l~~n~l~ 83 (138)
+.+..+.|++ ++.. +.+ ...++|+.|+|++|........++. ....|++|.+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 5566666666 6655 222 2356677777777722111111111 1124677777777665
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.70 E-value=2.1 Score=34.62 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=17.6
Q ss_pred CCCCCCEEEcccCccceeCCC--CC-ccccCcceEEecCC
Q 046299 44 NLSRLAHMDLSFDLRTFNFSS--GW-IPPFQLNTIILGSC 80 (138)
Q Consensus 44 ~l~~L~~L~ls~N~l~~~~~~--~~-~~~~~L~~L~l~~n 80 (138)
+.+.+..+.+++|++. .+.. ++ ...++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 4455566666666652 1100 00 11235666777766
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=68.48 E-value=0.037 Score=43.75 Aligned_cols=15 Identities=33% Similarity=0.124 Sum_probs=8.1
Q ss_pred CCCCCCEEEcccCcc
Q 046299 44 NLSRLAHMDLSFDLR 58 (138)
Q Consensus 44 ~l~~L~~L~ls~N~l 58 (138)
...++++|.++++.+
T Consensus 202 ~~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGV 216 (478)
T ss_pred ccccHHHHhhhhcCc
Confidence 344555555555554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.11 E-value=3.8 Score=18.41 Aligned_cols=10 Identities=10% Similarity=-0.113 Sum_probs=5.0
Q ss_pred CCccEEEccc
Q 046299 26 SFWTSLIILR 35 (138)
Q Consensus 26 ~~L~~L~Ls~ 35 (138)
++|+.|++++
T Consensus 2 ~~L~~L~l~~ 11 (26)
T smart00367 2 PNLRELDLSG 11 (26)
T ss_pred CCCCEeCCCC
Confidence 4455555544
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.33 E-value=9.4 Score=30.57 Aligned_cols=84 Identities=8% Similarity=-0.083 Sum_probs=50.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc------ccccCCCCCCEEEcccCccce--------eCCCC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG------DIITNLSRLAHMDLSFDLRTF--------NFSSG 65 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~------~~~~~l~~L~~L~ls~N~l~~--------~~~~~ 65 (138)
+++++++.|.....+|..+..+.--.-++.++.+. .++- -.++.-++++..+++.|..+. ..-+.
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~ 295 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDT 295 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccc
Confidence 46788898888777776554331003467777777 5543 334556788999999887641 11223
Q ss_pred CccccCcceEEecCCcCCCC
Q 046299 66 WIPPFQLNTIILGSCKMGPG 85 (138)
Q Consensus 66 ~~~~~~L~~L~l~~n~l~~~ 85 (138)
+..-.++ +|++..+....+
T Consensus 296 fS~~~sg-hln~~~~~~psE 314 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSE 314 (553)
T ss_pred cCcCccc-ccccccccCchh
Confidence 3333456 777776665433
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=54.01 E-value=5.6 Score=30.67 Aligned_cols=57 Identities=18% Similarity=-0.011 Sum_probs=28.1
Q ss_pred CCccEEEccc-c-ccc---cccc-CCCCCCEEEcccCc-cceeC-CCCCccccCcceEEecCCcC
Q 046299 26 SFWTSLIILR-K-LAG---DIIT-NLSRLAHMDLSFDL-RTFNF-SSGWIPPFQLNTIILGSCKM 82 (138)
Q Consensus 26 ~~L~~L~Ls~-~-l~~---~~~~-~l~~L~~L~ls~N~-l~~~~-~~~~~~~~~L~~L~l~~n~l 82 (138)
.+|+.|++++ . ++. ..++ .+++|+.|.+.++. ++..- -.....+..|++|++++|..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6677777776 4 554 2222 25667776655444 32110 00111233467777766654
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.58 E-value=2.4 Score=30.03 Aligned_cols=75 Identities=12% Similarity=-0.046 Sum_probs=43.4
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc---cccc-CCCCCCEEEcccC-ccceeCCCCCccccCcce
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIIT-NLSRLAHMDLSFD-LRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~-~l~~L~~L~ls~N-~l~~~~~~~~~~~~~L~~ 74 (138)
+.+|-++..|..+--+.+.++ +.++.|.+.+ .+.. +-++ ..++|+.|++++| +||..--..+..+++|+.
T Consensus 104 eaVDAsds~I~~eGle~L~~l---~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDL---RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEecCCchHHHHHHHHHhcc---chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 455666666654333445556 7788888777 5555 3333 4578999999988 454221122334456666
Q ss_pred EEecC
Q 046299 75 IILGS 79 (138)
Q Consensus 75 L~l~~ 79 (138)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66554
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.99 E-value=10 Score=36.46 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=21.7
Q ss_pred Eccc-cccc---ccccCCCCCCEEEcccCccc
Q 046299 32 IILR-KLAG---DIITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 32 ~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~ 59 (138)
||++ +|+. ..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4566 6766 67888888889999888874
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.66 E-value=19 Score=34.86 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=28.0
Q ss_pred EccCccccCcCCccccCCCCCCCccEEEccc-cccc
Q 046299 5 FVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG 39 (138)
Q Consensus 5 ~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~ 39 (138)
||++|+|+.+.+..|..+ ++|+.|+|++ .+.-
T Consensus 1 DLSnN~LstLp~g~F~~L---~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANL---CNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccC---CCceEEEeeCCcccc
Confidence 689999998777888899 9999999998 7764
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=37.64 E-value=12 Score=29.52 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=18.3
Q ss_pred CCccEEEccc--cccc----ccccCCCCCCEEEcccCc
Q 046299 26 SFWTSLIILR--KLAG----DIITNLSRLAHMDLSFDL 57 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~----~~~~~l~~L~~L~ls~N~ 57 (138)
.+|+.|+.++ .++. .--.+..+|+.+-++..+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 5667777666 4333 222345667777666654
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.43 E-value=29 Score=15.95 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=8.4
Q ss_pred ccCCCCCCEEEcc
Q 046299 42 ITNLSRLAHMDLS 54 (138)
Q Consensus 42 ~~~l~~L~~L~ls 54 (138)
|..+++|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 4556777777654
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.85 E-value=1.3e+02 Score=15.09 Aligned_cols=7 Identities=29% Similarity=0.728 Sum_probs=3.5
Q ss_pred CcceEEe
Q 046299 71 QLNTIIL 77 (138)
Q Consensus 71 ~L~~L~l 77 (138)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4455555
Done!