Query 046299
Match_columns 138
No_of_seqs 434 out of 1613
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 4.3E-23 1.5E-27 166.5 12.8 134 1-137 492-722 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-22 6E-27 147.9 12.3 133 1-137 127-286 (313)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-22 4.3E-27 148.7 9.3 134 1-137 78-262 (313)
4 2o6s_A Variable lymphocyte rec 99.9 4.4E-22 1.5E-26 137.7 10.2 134 1-137 30-183 (208)
5 3m19_A Variable lymphocyte rec 99.9 4.3E-21 1.5E-25 136.3 15.1 131 1-134 37-194 (251)
6 3rfs_A Internalin B, repeat mo 99.9 1.4E-21 4.7E-26 140.4 10.1 131 1-136 65-222 (272)
7 2o6q_A Variable lymphocyte rec 99.9 1.7E-20 5.7E-25 134.5 15.4 130 1-133 39-195 (270)
8 3rgz_A Protein brassinosteroid 99.9 1.9E-21 6.4E-26 157.0 11.0 134 1-137 396-556 (768)
9 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-20 8.4E-25 134.3 14.7 130 1-133 34-191 (285)
10 3e6j_A Variable lymphocyte rec 99.9 1.1E-20 3.7E-25 132.9 12.3 121 1-135 42-175 (229)
11 2v9t_B SLIT homolog 2 protein 99.8 1.8E-20 6.1E-25 131.1 13.2 120 1-133 34-166 (220)
12 3rfs_A Internalin B, repeat mo 99.8 3.9E-20 1.3E-24 132.8 15.2 133 1-136 87-239 (272)
13 4g8a_A TOLL-like receptor 4; l 99.8 6.7E-21 2.3E-25 149.0 11.7 120 1-133 54-187 (635)
14 1ozn_A Reticulon 4 receptor; N 99.8 3.6E-20 1.2E-24 133.5 14.6 130 1-133 58-215 (285)
15 1p9a_G Platelet glycoprotein I 99.8 2.7E-20 9.2E-25 135.1 13.9 132 1-137 33-189 (290)
16 4fcg_A Uncharacterized protein 99.8 5.8E-21 2E-25 140.7 10.0 91 45-137 182-295 (328)
17 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-20 5.9E-25 131.2 11.4 121 2-135 35-169 (220)
18 4fcg_A Uncharacterized protein 99.8 1.5E-20 5.2E-25 138.5 10.8 131 2-137 107-271 (328)
19 3zyi_A Leucine-rich repeat-con 99.8 5.1E-20 1.7E-24 140.5 13.5 130 1-133 77-232 (452)
20 2o6q_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 129.0 15.3 131 1-134 63-220 (270)
21 2z66_A Variable lymphocyte rec 99.8 2.9E-20 9.8E-25 135.1 11.1 129 2-133 104-262 (306)
22 3v47_A TOLL-like receptor 5B a 99.8 4.2E-20 1.4E-24 140.3 11.9 124 1-137 277-413 (455)
23 2z66_A Variable lymphocyte rec 99.8 8.9E-20 3E-24 132.5 13.1 133 1-137 80-241 (306)
24 3zyj_A Leucine-rich repeat-con 99.8 1.2E-19 4E-24 138.1 14.1 131 1-134 66-222 (440)
25 1wwl_A Monocyte differentiatio 99.8 1.2E-20 4.1E-25 137.9 8.0 133 1-137 97-270 (312)
26 2z62_A TOLL-like receptor 4, v 99.8 1.3E-19 4.3E-24 130.1 13.0 114 1-117 30-162 (276)
27 4ezg_A Putative uncharacterize 99.8 4E-20 1.4E-24 127.1 9.7 128 1-133 46-195 (197)
28 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.7E-24 135.4 12.8 97 1-100 41-144 (361)
29 2z62_A TOLL-like receptor 4, v 99.8 1.3E-19 4.5E-24 129.9 10.7 97 1-100 54-157 (276)
30 3t6q_A CD180 antigen; protein- 99.8 3.9E-19 1.3E-23 139.3 14.1 133 1-136 35-196 (606)
31 2ell_A Acidic leucine-rich nuc 99.8 5.8E-20 2E-24 123.1 8.1 122 1-137 26-164 (168)
32 2id5_A Lingo-1, leucine rich r 99.8 5E-19 1.7E-23 135.5 14.3 130 1-133 34-190 (477)
33 2id5_A Lingo-1, leucine rich r 99.8 4.3E-19 1.5E-23 135.8 13.7 114 1-117 58-189 (477)
34 1w8a_A SLIT protein; signaling 99.8 4.9E-19 1.7E-23 121.4 12.0 119 2-136 11-143 (192)
35 3m19_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 123.2 14.8 127 2-134 17-170 (251)
36 3v47_A TOLL-like receptor 5B a 99.8 2.5E-19 8.7E-24 136.0 11.2 130 1-133 32-194 (455)
37 3oja_A Leucine-rich immune mol 99.8 1.7E-19 5.7E-24 139.3 10.3 97 1-100 36-152 (487)
38 3o6n_A APL1; leucine-rich repe 99.8 8.3E-19 2.8E-23 131.3 13.7 129 1-132 71-218 (390)
39 3vq2_A TLR4, TOLL-like recepto 99.8 5.3E-19 1.8E-23 138.6 13.1 131 1-134 401-560 (606)
40 3oja_B Anopheles plasmodium-re 99.8 7E-19 2.4E-23 138.5 13.7 129 1-132 77-224 (597)
41 3vq2_A TLR4, TOLL-like recepto 99.8 8E-19 2.7E-23 137.6 13.4 130 1-133 34-195 (606)
42 3zyi_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 132.0 14.3 128 1-133 101-280 (452)
43 3j0a_A TOLL-like receptor 5; m 99.8 8.5E-19 2.9E-23 142.7 13.3 133 1-136 26-191 (844)
44 1p9a_G Platelet glycoprotein I 99.8 2.1E-18 7.1E-23 125.2 13.9 128 1-133 57-209 (290)
45 1ziw_A TOLL-like receptor 3; i 99.8 6.2E-19 2.1E-23 139.9 12.1 133 1-136 27-188 (680)
46 2z80_A TOLL-like receptor 2, v 99.8 8.6E-19 2.9E-23 129.7 11.9 129 2-133 79-236 (353)
47 3zyj_A Leucine-rich repeat-con 99.8 2.4E-18 8.3E-23 130.8 14.4 130 1-136 90-271 (440)
48 3o53_A Protein LRIM1, AGAP0063 99.8 4E-19 1.4E-23 130.1 9.1 57 1-60 36-94 (317)
49 2z7x_B TOLL-like receptor 1, v 99.8 8.4E-19 2.9E-23 135.4 11.1 129 1-134 326-483 (520)
50 2z63_A TOLL-like receptor 4, v 99.8 1E-18 3.5E-23 135.8 11.2 133 1-137 375-536 (570)
51 1xku_A Decorin; proteoglycan, 99.8 2.3E-18 7.8E-23 126.3 12.2 94 1-100 54-153 (330)
52 4eco_A Uncharacterized protein 99.8 2E-19 6.7E-24 142.7 6.8 128 1-132 208-390 (636)
53 1wwl_A Monocyte differentiatio 99.8 2.8E-19 9.7E-24 130.6 7.1 132 1-136 65-245 (312)
54 2o6s_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 115.2 15.0 129 2-136 10-165 (208)
55 2z80_A TOLL-like receptor 2, v 99.8 5.6E-19 1.9E-23 130.7 8.6 129 1-133 54-212 (353)
56 3t6q_A CD180 antigen; protein- 99.8 2.1E-18 7.3E-23 135.1 12.3 54 42-95 396-450 (606)
57 1xku_A Decorin; proteoglycan, 99.8 2.7E-18 9.4E-23 125.9 12.1 129 1-136 123-279 (330)
58 4eco_A Uncharacterized protein 99.8 1.8E-19 6.1E-24 142.9 5.9 132 1-137 251-420 (636)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.5E-18 8.7E-23 134.1 12.1 129 1-134 355-512 (562)
60 1h6u_A Internalin H; cell adhe 99.8 3.5E-18 1.2E-22 124.8 12.0 76 1-83 65-142 (308)
61 4glp_A Monocyte differentiatio 99.8 7.1E-19 2.4E-23 128.3 8.3 81 1-84 93-183 (310)
62 2z63_A TOLL-like receptor 4, v 99.8 4.7E-18 1.6E-22 132.0 13.3 133 1-136 30-194 (570)
63 2z81_A CD282 antigen, TOLL-lik 99.8 8.6E-19 2.9E-23 135.9 9.0 129 1-132 28-185 (549)
64 2xwt_C Thyrotropin receptor; s 99.8 2.4E-18 8.1E-23 121.1 10.5 128 1-133 33-194 (239)
65 4glp_A Monocyte differentiatio 99.8 4.7E-19 1.6E-23 129.2 7.1 128 1-132 147-307 (310)
66 1ziw_A TOLL-like receptor 3; i 99.8 6.3E-18 2.1E-22 134.2 13.9 114 1-117 51-184 (680)
67 2je0_A Acidic leucine-rich nuc 99.8 7.6E-19 2.6E-23 115.4 6.7 115 1-128 19-149 (149)
68 2v70_A SLIT-2, SLIT homolog 2 99.8 5.6E-18 1.9E-22 118.4 11.4 104 1-117 59-166 (220)
69 1h6u_A Internalin H; cell adhe 99.8 7.6E-18 2.6E-22 123.0 12.3 124 1-133 87-231 (308)
70 1h6t_A Internalin B; cell adhe 99.8 6.3E-18 2.2E-22 122.6 11.8 124 1-133 70-214 (291)
71 1w8a_A SLIT protein; signaling 99.8 6.4E-18 2.2E-22 115.8 11.2 104 1-117 31-139 (192)
72 2wfh_A SLIT homolog 2 protein 99.8 1.8E-17 6.1E-22 113.8 13.0 116 2-133 13-140 (193)
73 2z81_A CD282 antigen, TOLL-lik 99.8 6.1E-18 2.1E-22 131.1 11.9 130 1-133 52-210 (549)
74 2o6r_A Variable lymphocyte rec 99.8 1.4E-17 4.6E-22 112.4 12.1 119 2-136 10-141 (177)
75 2ft3_A Biglycan; proteoglycan, 99.8 6.2E-18 2.1E-22 124.2 11.1 94 1-100 56-155 (332)
76 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-18 9.4E-23 132.5 9.6 115 1-131 23-150 (520)
77 2xwt_C Thyrotropin receptor; s 99.8 6.6E-18 2.3E-22 118.8 10.6 131 1-137 57-222 (239)
78 3o6n_A APL1; leucine-rich repe 99.8 1E-17 3.5E-22 125.4 12.3 129 1-133 47-200 (390)
79 4ecn_A Leucine-rich repeat pro 99.8 1.2E-18 4.1E-23 142.5 7.5 128 1-132 450-632 (876)
80 4g8a_A TOLL-like receptor 4; l 99.8 8.2E-18 2.8E-22 131.5 11.9 120 1-133 447-581 (635)
81 3e6j_A Variable lymphocyte rec 99.8 3.2E-17 1.1E-21 115.1 13.6 118 2-136 22-151 (229)
82 2ft3_A Biglycan; proteoglycan, 99.8 1E-17 3.5E-22 123.0 11.5 126 1-133 125-278 (332)
83 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5E-22 116.3 11.3 104 1-117 58-165 (220)
84 2xot_A Amphoterin-induced prot 99.7 8.3E-18 2.8E-22 125.2 10.6 122 1-133 66-203 (361)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-17 3.7E-22 130.6 11.6 120 1-136 54-188 (562)
86 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 117.5 12.7 123 1-133 43-186 (263)
87 3oja_B Anopheles plasmodium-re 99.7 1.6E-17 5.6E-22 130.7 12.2 130 1-133 53-206 (597)
88 4ay9_X Follicle-stimulating ho 99.7 5.5E-17 1.9E-21 120.2 12.3 133 1-137 32-219 (350)
89 4ecn_A Leucine-rich repeat pro 99.7 7.3E-18 2.5E-22 137.9 8.1 130 1-136 493-661 (876)
90 1m9s_A Internalin B; cell inva 99.7 5.1E-17 1.8E-21 128.5 12.7 124 1-133 67-211 (605)
91 1o6v_A Internalin A; bacterial 99.7 5.1E-17 1.7E-21 124.3 12.3 124 1-133 245-389 (466)
92 2wfh_A SLIT homolog 2 protein 99.7 6.5E-17 2.2E-21 111.0 11.4 103 1-117 33-139 (193)
93 2o6r_A Variable lymphocyte rec 99.7 9.6E-17 3.3E-21 108.2 12.0 104 1-117 30-137 (177)
94 1a9n_A U2A', U2A'; complex (nu 99.7 1.5E-17 5.1E-22 112.3 7.7 117 1-132 21-153 (176)
95 4b8c_D Glucose-repressible alc 99.7 2.9E-18 9.8E-23 138.0 4.8 101 1-117 226-329 (727)
96 1h6t_A Internalin B; cell adhe 99.7 7.8E-17 2.7E-21 116.9 11.7 126 1-136 48-194 (291)
97 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-16 4.9E-21 129.7 14.3 114 1-117 268-394 (844)
98 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-17 6.6E-22 121.1 6.8 105 26-132 120-250 (317)
99 4b8c_D Glucose-repressible alc 99.7 1.4E-17 4.8E-22 134.0 5.9 120 2-136 194-333 (727)
100 3bz5_A Internalin-J, INLJ; leu 99.7 5E-16 1.7E-20 119.1 13.8 122 1-133 44-184 (457)
101 1o6v_A Internalin A; bacterial 99.7 2E-16 6.9E-21 121.0 11.6 107 26-136 243-370 (466)
102 3oja_A Leucine-rich immune mol 99.7 3.2E-17 1.1E-21 126.6 6.8 124 1-132 101-250 (487)
103 4fmz_A Internalin; leucine ric 99.7 2.8E-16 9.5E-21 115.6 11.6 123 2-133 180-325 (347)
104 3bz5_A Internalin-J, INLJ; leu 99.7 8.6E-16 3E-20 117.8 14.6 123 1-133 87-247 (457)
105 1jl5_A Outer protein YOPM; leu 99.7 1.1E-15 3.9E-20 117.0 14.8 74 1-83 133-208 (454)
106 4fmz_A Internalin; leucine ric 99.7 7.7E-17 2.6E-21 118.6 7.8 123 1-132 201-346 (347)
107 1dce_A Protein (RAB geranylger 99.7 1.9E-16 6.5E-21 124.4 10.1 109 1-126 443-567 (567)
108 3g39_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 103.6 11.5 100 2-117 12-115 (170)
109 1xeu_A Internalin C; cellular 99.7 8.4E-17 2.9E-21 115.2 6.8 121 3-133 23-164 (263)
110 1jl5_A Outer protein YOPM; leu 99.7 3.6E-15 1.2E-19 114.2 14.8 102 26-133 131-251 (454)
111 1m9s_A Internalin B; cell inva 99.6 8E-16 2.7E-20 121.7 11.0 126 1-136 45-191 (605)
112 3cvr_A Invasion plasmid antige 99.6 3.6E-15 1.2E-19 117.3 14.3 75 1-88 61-137 (571)
113 2r9u_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 100.8 11.5 100 2-117 15-118 (174)
114 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.5E-20 119.3 10.7 119 1-136 102-247 (571)
115 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.4E-20 104.4 8.3 110 1-117 68-194 (197)
116 3goz_A Leucine-rich repeat-con 99.6 9.5E-17 3.3E-21 119.3 2.0 82 1-85 24-124 (362)
117 1ds9_A Outer arm dynein; leuci 99.6 1.5E-18 5.1E-23 119.3 -7.5 119 2-136 21-157 (198)
118 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 99.3 6.4 97 26-134 17-128 (149)
119 3goz_A Leucine-rich repeat-con 99.6 2.7E-16 9.1E-21 116.9 1.8 129 3-134 2-182 (362)
120 2ell_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 99.4 7.1 98 26-136 24-136 (168)
121 2ca6_A RAN GTPase-activating p 99.6 3.7E-16 1.2E-20 116.8 1.3 35 1-38 96-135 (386)
122 2ast_B S-phase kinase-associat 99.6 6.3E-16 2.2E-20 113.1 2.2 129 1-133 72-237 (336)
123 3g06_A SSPH2 (leucine-rich rep 99.6 9.4E-14 3.2E-18 110.2 14.2 32 26-59 81-114 (622)
124 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.5E-19 97.7 7.6 104 17-137 13-130 (176)
125 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-13 4.2E-18 109.5 14.3 49 1-58 83-133 (622)
126 2ca6_A RAN GTPase-activating p 99.5 7.8E-16 2.7E-20 115.0 1.5 124 1-135 161-319 (386)
127 3g39_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 95.6 9.2 82 1-85 32-117 (170)
128 2ifg_A High affinity nerve gro 99.5 5.7E-14 2E-18 103.5 10.8 99 3-117 12-116 (347)
129 2ast_B S-phase kinase-associat 99.5 5.1E-16 1.7E-20 113.6 -0.4 127 1-130 95-258 (336)
130 2r9u_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 95.0 9.1 84 1-88 35-122 (174)
131 1dce_A Protein (RAB geranylger 99.5 7.4E-14 2.5E-18 109.7 7.0 85 1-90 465-552 (567)
132 4ay9_X Follicle-stimulating ho 99.5 5.5E-13 1.9E-17 98.7 11.0 132 1-136 56-240 (350)
133 1z7x_W Ribonuclease inhibitor; 99.5 5.3E-15 1.8E-19 112.3 0.0 31 103-133 369-412 (461)
134 1z7x_W Ribonuclease inhibitor; 99.4 8.2E-15 2.8E-19 111.2 -0.8 54 2-58 6-68 (461)
135 1ds9_A Outer arm dynein; leuci 99.4 3.7E-15 1.3E-19 102.2 -4.5 113 1-133 50-186 (198)
136 2ifg_A High affinity nerve gro 99.3 2.7E-12 9.4E-17 94.4 8.2 79 1-83 33-116 (347)
137 3un9_A NLR family member X1; l 99.3 3.7E-14 1.3E-18 106.2 -2.9 133 1-133 74-253 (372)
138 3sb4_A Hypothetical leucine ri 99.3 3.1E-11 1.1E-15 88.5 10.7 131 1-136 51-313 (329)
139 3ogk_B Coronatine-insensitive 99.1 5.2E-11 1.8E-15 92.9 4.7 75 1-79 166-252 (592)
140 3un9_A NLR family member X1; l 99.0 1.2E-11 4E-16 92.7 -2.0 129 1-132 103-283 (372)
141 3ogk_B Coronatine-insensitive 98.9 9.9E-10 3.4E-14 85.6 5.5 130 1-134 194-393 (592)
142 3sb4_A Hypothetical leucine ri 98.9 8E-09 2.7E-13 75.6 9.9 89 1-93 228-320 (329)
143 1io0_A Tropomodulin; LRR prote 98.8 1.4E-09 4.9E-14 73.8 1.7 97 26-132 36-164 (185)
144 1io0_A Tropomodulin; LRR prote 98.8 3.7E-10 1.3E-14 76.7 -1.6 108 1-117 38-164 (185)
145 2p1m_B Transport inhibitor res 98.8 1.7E-10 5.8E-15 89.9 -3.9 106 26-132 372-519 (594)
146 3rw6_A Nuclear RNA export fact 98.6 1.7E-08 5.8E-13 72.5 3.7 79 4-87 148-237 (267)
147 2ra8_A Uncharacterized protein 98.6 2E-08 6.8E-13 75.0 4.0 57 70-133 252-321 (362)
148 2p1m_B Transport inhibitor res 98.6 1.2E-08 4E-13 79.5 2.8 84 26-115 105-195 (594)
149 4fdw_A Leucine rich hypothetic 98.5 2.1E-06 7.1E-11 64.8 12.6 127 1-132 182-358 (401)
150 3rw6_A Nuclear RNA export fact 98.4 4.3E-08 1.5E-12 70.4 0.7 65 43-117 167-233 (267)
151 4fdw_A Leucine rich hypothetic 98.3 4.4E-06 1.5E-10 63.0 10.1 103 27-131 249-382 (401)
152 2ra8_A Uncharacterized protein 98.3 5.5E-07 1.9E-11 67.2 4.7 105 26-133 139-293 (362)
153 3e4g_A ATP synthase subunit S, 98.3 2.2E-07 7.6E-12 62.7 1.3 82 26-117 61-153 (176)
154 3e4g_A ATP synthase subunit S, 97.9 2.5E-06 8.4E-11 57.6 0.7 78 1-81 63-150 (176)
155 4gt6_A Cell surface protein; l 97.7 0.00036 1.2E-08 52.0 10.1 110 17-131 259-390 (394)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 1.6E-05 5.6E-10 54.4 2.3 96 26-131 41-169 (197)
157 3rfe_A Platelet glycoprotein I 97.3 0.00057 2E-08 43.5 5.8 52 3-59 12-68 (130)
158 3rfe_A Platelet glycoprotein I 97.3 0.00057 1.9E-08 43.5 5.5 55 50-117 12-68 (130)
159 4h09_A Hypothetical leucine ri 97.2 0.0018 6.1E-08 47.7 8.5 76 16-95 233-311 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00012 4E-09 50.2 1.2 104 1-117 43-170 (197)
161 4fs7_A Uncharacterized protein 97.0 0.0069 2.4E-07 45.0 10.1 24 104-128 343-375 (394)
162 4h09_A Hypothetical leucine ri 96.9 0.012 4.1E-07 43.2 10.8 60 17-79 257-319 (379)
163 4gt6_A Cell surface protein; l 96.9 0.0098 3.4E-07 44.1 10.3 102 26-130 242-368 (394)
164 4fs7_A Uncharacterized protein 96.9 0.0024 8.3E-08 47.4 6.8 83 17-114 291-376 (394)
165 2lz0_A Uncharacterized protein 81.1 6.5 0.00022 23.3 6.3 44 10-56 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.3e-23 Score=166.52 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=99.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc---------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI--------- 67 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~--------- 67 (138)
|++|++++|++++.+|.+++.+ ++|++|++++ ++++ ..++.+++|++|++++|+++|.+|..+.
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRL---ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGC---TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCEEEccCCccCCcCChHHhcC---CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 4566777777766667777766 7777777777 6665 5667777777777777777665554321
Q ss_pred -------------------------------------------------------------cccCcceEEecCCcCCCCC
Q 046299 68 -------------------------------------------------------------PPFQLNTIILGSCKMGPGF 86 (138)
Q Consensus 68 -------------------------------------------------------------~~~~L~~L~l~~n~l~~~~ 86 (138)
.+.+|++|++++|+++|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 2345777888888888888
Q ss_pred CCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 87 PNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 87 p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
|.+++.++. +|+++ +.+++|++||+++|+++ .+.|++||+++|+++|.||.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 888887777 78877 56778889999999888 36788999999999999885
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.8e-22 Score=147.87 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=81.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCC-CCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLS-RLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ ++++ ..+..++ +|++|++++|++++.+|..+..+. |++|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSL---PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGC---TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCEEeCCCCccCCcCChHHhcC---CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 3455555555555555555555 5555555555 5543 4445554 555555555555555555554443 6666
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
++++|++++.+|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++|
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 66666665556666666666 66666 34577888888888876 3678888888888888
Q ss_pred cCCC
Q 046299 134 QYPR 137 (138)
Q Consensus 134 ~iP~ 137 (138)
.+|.
T Consensus 283 ~ip~ 286 (313)
T 1ogq_A 283 EIPQ 286 (313)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 8875
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.3e-22 Score=148.65 Aligned_cols=134 Identities=18% Similarity=0.319 Sum_probs=88.4
Q ss_pred CcEEEccC-ccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGN-NRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++ |.+++.+|..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++.+|..+..+.+|++|
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCeeeCCCCCcccccCChhHhcC---CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46677773 66766677777777 7777777776 6664 556666677777777776666666666666666666
Q ss_pred EecCCcCCCCCCCCCCCCC-C--eEEec-----------------------------------cCCCceeEEEeeCCccc
Q 046299 76 ILGSCKMGPGFPNPIPEMP-H--DVLIS-----------------------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~-~--~L~ls-----------------------------------~~l~~L~~L~ls~N~l~ 117 (138)
++++|++++.+|..+..+. . +++++ ..+++|++|++++|+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 6666666666666666555 3 55554 34556666666666665
Q ss_pred --------CCCCcEEEccCCeeeecCCC
Q 046299 118 --------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 --------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++|++++|+++|.+|.
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred eecCcccccCCCCEEECcCCcccCcCCh
Confidence 35677777777777776664
No 4
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.4e-22 Score=137.67 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=106.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..++.+ ++|++|++++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDEL---TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCccCcCChhhhccc---ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5789999999988777778889 9999999999 9988 5588999999999999999866666677888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--CCCCcEEEccCCeeeecCCC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|.+. .++++.|+++.|+++|.+|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeec
Confidence 9999998655556777777 66665 33566777777777666 55677777777777776664
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.3e-21 Score=136.32 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=111.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEccCCCcCccCHhHhcCc---ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 5789999999998888889999 9999999999 9988 5689999999999999999877777778888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|++++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999998555555777777 88887 45678999999999988 3678899999999876
Q ss_pred c
Q 046299 134 Q 134 (138)
Q Consensus 134 ~ 134 (138)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 6
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.4e-21 Score=140.43 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=96.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++ + +.++.+ ++|++|++++ .+++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCC-c-hhhcCC---CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5678888888766 2 367777 7888888887 7777 4477778888888888887766665666777788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 8888887555555666666 77776 34677888888888887 3678888888888877
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
..|
T Consensus 220 ~~~ 222 (272)
T 3rfs_A 220 TCP 222 (272)
T ss_dssp CTT
T ss_pred cCc
Confidence 655
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.7e-20 Score=134.52 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=94.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|..+ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.+|++|+
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRL---TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSC---TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCEEECcCCCCCeeCHHHhcCC---CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 4678888888877666677777 8888888888 7777 4567788888888888887765555666677788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 8888777555555666666 77776 34567777777777776 2567777777777765
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=1.9e-21 Score=156.97 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=111.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++.+|..+..+.+|++|+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGC---TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccEEECCCCccccccCHHHhcC---CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5677778888877788888888 8888888888 8876 6778888888888888888888888888888888888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++.+|.++..+++ +|+++ +.+++|++|++++|+++ .++|++||+++|+++|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 8888888888888888777 78877 45678999999999987 4789999999999999
Q ss_pred cCCC
Q 046299 134 QYPR 137 (138)
Q Consensus 134 ~iP~ 137 (138)
.+|.
T Consensus 553 ~ip~ 556 (768)
T 3rgz_A 553 TIPA 556 (768)
T ss_dssp BCCG
T ss_pred cCCh
Confidence 9985
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.5e-20 Score=134.31 Aligned_cols=130 Identities=16% Similarity=0.095 Sum_probs=69.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc-cceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL-RTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..+..|..+ ++|++|++++ .+++ ..|..+++|++|++++|. ++...|..+..+.+|++|
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRAC---RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred ceEEEeeCCcCCccCHHHcccC---CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3556666666655555555555 6666666665 5555 445555666666666664 443334455555555555
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
++++|++++..|..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 55555555444444555544 55554 23445555555555544 234444455544444
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 191 ~ 191 (285)
T 1ozn_A 191 H 191 (285)
T ss_dssp E
T ss_pred c
Confidence 4
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.1e-20 Score=132.92 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=105.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|..+ ++|++|++++ +++. ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSL---INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCccCccCHHHhhCc---cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 5789999999999888889999 9999999999 9887 5588999999999999999877666678888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+++|+++ .+|..+..+++ |++|++++|+|+ .++|+.|++++|++.+..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTH----------LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTT----------CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCC----------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999998 88888876655 999999999998 368999999999988643
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.8e-20 Score=131.13 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=95.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|+|++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..|..+.+|++|+
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPY---KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTC---TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHhHhhCC---CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4678888888877666677788 8888888888 8877 6788888888888888888755555566777888888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ |++|++++|+|+ .++|+.|++++|++..
T Consensus 111 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHN----------LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCC----------CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888888666777776555 999999999998 3678999999999864
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.9e-20 Score=132.81 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=67.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..+..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCccChhHhcCC---cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 3455555555555444444555 5555555555 5554 2345555555555555555444443344445555555
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--CCCCcEEEccCCeeeecCC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--~~~L~~L~Ls~N~l~g~iP 136 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|.+. .++++.++++.|.++|.+|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence 5555555333333444444 45544 23445555555555555 3445555555555555554
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.7e-21 Score=149.00 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=97.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|||++|+|++..|.+|.++ ++|++|+|++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l---~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCEEEeeCCCCCCCCHHHHhCC---CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 5799999999999888899999 9999999999 9998 5799999999999999999877777788899999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..++++++ |++|++++|+++ .++|++|++++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~----------L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKT----------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTT----------CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCCCCChhhhhcCcc----------cCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999999665667888776 555555555553 2445555555555554
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=3.6e-20 Score=133.47 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=87.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..|..|..+ ++|++|++++ . ++. ..|..+++|++|++++|.+++..+..+..+.+|++|
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGL---ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCccceeCHhhcCCc---cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 5677777777777667777777 7777777777 5 555 556777777777777777766656666666677777
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
++++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|+++
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 77777776444445666666 66666 33556666677666665 245666666666666
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 215 ~ 215 (285)
T 1ozn_A 215 A 215 (285)
T ss_dssp C
T ss_pred c
Confidence 5
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.7e-20 Score=135.14 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=106.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+++|++++|++++..|..|..+ ++|++|++++ .+++ ...+.+++|++|++++|+++ .+|..+..+.+|++|+++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPY---TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTC---TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCEEEcCCCcCCccCHHHhhcC---CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 5788999999988778888888 9999999999 8888 55578888888888888886 667777777788888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+|++++..|..+..+++ +|+++ ..+++|+.|++++|+|+ .++|+.|++++|+++. +
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-c
Confidence 88888555567777777 78877 35678888888888887 3678888888888875 6
Q ss_pred CC
Q 046299 136 PR 137 (138)
Q Consensus 136 P~ 137 (138)
|.
T Consensus 188 p~ 189 (290)
T 1p9a_G 188 PK 189 (290)
T ss_dssp CT
T ss_pred Ch
Confidence 64
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=5.8e-21 Score=140.73 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=42.3
Q ss_pred CCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEE
Q 046299 45 LSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVD 110 (138)
Q Consensus 45 l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ 110 (138)
+++|++|++++|.++ .+|..+..+.+|++|++++|+++ .+|..+..+++ +|+++ +.+++|++|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 333333333333333 33333333444444444444444 23334444444 44444 3344555555
Q ss_pred eeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 111 IYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 111 ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++. .++|+.|++++|++.|.+|.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 5555443 24556666666666665553
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=131.19 Aligned_cols=121 Identities=14% Similarity=0.075 Sum_probs=86.8
Q ss_pred cEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++|++++|+|++..| ..|..+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l---~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKL---PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CEEEcCCCcCCccCchhhhccC---CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 566777777766533 345666 7777777777 7766 3577777777777777777665555566666777777
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+++|++++..|..+..++ +|++|++++|+|+ .++|+.|++++|++++..
T Consensus 112 Ls~N~l~~~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLS----------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTSCCCCBCTTSSTTCT----------TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCCcCCeECHhHcCCCc----------cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777766666666554 4999999999998 368999999999998643
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.5e-20 Score=138.50 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCcc---------c
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIP---------P 69 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~---------~ 69 (138)
++|++++|.++ .+|..++.+ ++|++|++++ +++. ..|+++++|++|++++|++.+.+|..+.. +
T Consensus 107 ~~L~L~~n~l~-~lp~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 107 QHMTIDAAGLM-ELPDTMQQF---AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp SEEEEESSCCC-CCCSCGGGG---TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CEEECCCCCcc-chhHHHhcc---CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 44555555554 344444455 5555555555 4444 34455555555555554444444444332 4
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEcc
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLG 127 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls 127 (138)
.+|++|++++|+++ .+|..++.+++ +|+++ ..+++|++|++++|++. .++|++|+++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 45555555555554 45555554444 44444 33455555555555544 2455566666
Q ss_pred CCeeeecCCC
Q 046299 128 INKFSGQYPR 137 (138)
Q Consensus 128 ~N~l~g~iP~ 137 (138)
+|++.+.+|.
T Consensus 262 ~n~~~~~~p~ 271 (328)
T 4fcg_A 262 DCSNLLTLPL 271 (328)
T ss_dssp TCTTCCBCCT
T ss_pred CCCchhhcch
Confidence 6655555553
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=5.1e-20 Score=140.50 Aligned_cols=130 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..|..|..+ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHL---HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred ccEEECcCCcCceECHHHcCCC---CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5789999999998888889999 9999999999 8888 6788999999999999999876666788888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+++|+++...+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence 9999998555556777766 77766 34566777777777666 3456666666666655
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-19 Score=128.99 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=113.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..+..|..+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKEL---KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSC---TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCeeChhhhcCC---CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 6899999999987666667889 9999999999 9988 5788999999999999999877777788888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++..
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999998555555778877 88887 45689999999999998 3689999999999875
Q ss_pred c
Q 046299 134 Q 134 (138)
Q Consensus 134 ~ 134 (138)
.
T Consensus 220 ~ 220 (270)
T 2o6q_A 220 T 220 (270)
T ss_dssp S
T ss_pred C
Confidence 3
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.9e-20 Score=135.07 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=63.8
Q ss_pred cEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcceE
Q 046299 2 KDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNTI 75 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~L 75 (138)
++|++++|++++..+ ..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++ ..|..+..+.+|++|
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEECCCCcccccccchhhhhc---cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 344444444443322 234444 5555555555 4443 334455555555555555543 344444555555555
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc----------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l 131 (138)
++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ +++|++|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 55555555444555555544 45554 23445555555555554 13555555555555
Q ss_pred ee
Q 046299 132 SG 133 (138)
Q Consensus 132 ~g 133 (138)
++
T Consensus 261 ~~ 262 (306)
T 2z66_A 261 AC 262 (306)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.2e-20 Score=140.32 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=109.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHF---TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ceEEEecCccccccchhhcccC---CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 5788999999998888889999 9999999999 8888 5788999999999999999877788888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++++..|.++..+++ |++|++++|+++ .++|++|++++|++++.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPN----------LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhcccccc----------ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999998777888887665 999999999998 36899999999999998873
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=8.9e-20 Score=132.47 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=119.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++ +|..+..+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGL---EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETC---TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cCEEECCCCcccc-ChhhcCCC---CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 6899999999975 77789999 9999999999 9888 368999999999999999998888888888999999
Q ss_pred EecCCcCCC-CCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGP-GFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~-~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|.+++ .+|..+..+++ +|+++ ..+++|++|++++|+++ .++|++||+++|++
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999986 58888998888 89988 56789999999999998 37899999999999
Q ss_pred eecCCC
Q 046299 132 SGQYPR 137 (138)
Q Consensus 132 ~g~iP~ 137 (138)
++..|.
T Consensus 236 ~~~~~~ 241 (306)
T 2z66_A 236 MTSKKQ 241 (306)
T ss_dssp CBCSSS
T ss_pred cccCHH
Confidence 986653
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=138.11 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=100.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++++|++++..+..|.++ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSC---SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CcEEEccCCcCCeeCHHHhhCC---CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4788999999988878888888 9999999998 8887 6788899999999999988766666777888899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~ 134 (138)
+++|+++...+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 9999888555556777766 77766 34566777777777666 35666666666666653
No 25
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-20 Score=137.88 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=102.5
Q ss_pred CcEEEccCccccCcCCccc--cCCCCCCCccEEEccc-cccc--ccccCC-----CCCCEEEcccCccceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKAS--DSFPSFSFWTSLIILR-KLAG--DIITNL-----SRLAHMDLSFDLRTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~--~~l~~~~~L~~L~Ls~-~l~~--~~~~~l-----~~L~~L~ls~N~l~~~~~~~~~~~~ 70 (138)
|++|++++|++++.+|..+ +.+ ++|++|++++ ++++ ..++.+ ++|++|++++|++++..|..+..+.
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCS---CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred ccEEEccCCcccchhHHHHHHhcC---CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5789999999988888876 788 8999999999 8887 455555 8899999999999877778888888
Q ss_pred CcceEEecCCcCCCC--CCCCC--CCCCC--eEEec---------------cCCCceeEEEeeCCccc----------CC
Q 046299 71 QLNTIILGSCKMGPG--FPNPI--PEMPH--DVLIS---------------SFQQYVFRVDIYFQQYV----------SQ 119 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~--~p~~~--~~l~~--~L~ls---------------~~l~~L~~L~ls~N~l~----------~~ 119 (138)
+|++|++++|++.+. +|..+ ..+++ +|+++ ..+++|++|++++|+++ ++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 899999999987754 23333 55666 77777 24567888888888776 25
Q ss_pred CCcEEEccCCeeeecCCC
Q 046299 120 SWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 120 ~L~~L~Ls~N~l~g~iP~ 137 (138)
+|++|++++|+|+ .+|.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp TCCEEECTTSCCS-SCCS
T ss_pred CCCEEECCCCccC-hhhh
Confidence 6777788877777 3664
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1.3e-19 Score=130.05 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=78.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTC---TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccEEECCCCcccccCHhHhccc---cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4677888888877666677777 7888888877 7776 4577777888888888877766666666667777777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 7777776544445666655 56655 23456666666666655
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=4e-20 Score=127.07 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=107.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ .++. ..+..+++|++|++++|.+++..+..+..+.+|++|+++
T Consensus 46 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTD-LT-GIEYA---HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSC-CT-TGGGC---TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccC-hH-HHhcC---CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5789999999974 66 68888 9999999999 8888 889999999999999999988778888889999999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99999778888888887 77776 44677888888888887 4778888888888765
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.1e-19 Score=135.37 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=80.8
Q ss_pred CcEEEccCccccCcCCcccc-CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASD-SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~-~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.|+|++|+|++..+..+. .+ ++|++|+|++ ++++ ..|.++++|++|++++|+++...+..|..+.+|++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l---~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccChhhhhhcc---cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 46889999999887777776 88 9999999999 8888 568899999999999999987777778888899999
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
++++|++++..|..+..+++ +|+++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECC
Confidence 99999998777788887776 44444
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=1.3e-19 Score=129.94 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..|..+ ++|++|++++ .+++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CcEEECCCCcCCccCHHHccCC---cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 5677777777776666667777 7777777777 7766 4567777777777777777655554566666777777
Q ss_pred ecCCcCCC-CCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGP-GFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~--~L~ls 100 (138)
+++|++++ .+|..+..+++ +|+++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CcCCccceecCchhhccCCCCCEEECC
Confidence 77777764 24666666665 66665
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.9e-19 Score=139.34 Aligned_cols=133 Identities=16% Similarity=0.072 Sum_probs=117.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|+++++|++|++++|++++..|..+..+.+|++|+
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTC---TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcEEEccCCccCcCChhHhccC---ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 5789999999999889999999 9999999999 9988 6799999999999999999988899999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCc--EEEccCCee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWT--IIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~--~L~Ls~N~l 131 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++++ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999999666778888888 88887 23678999999999888 46677 899999999
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
++..|
T Consensus 192 ~~~~~ 196 (606)
T 3t6q_A 192 AGIEP 196 (606)
T ss_dssp CEECT
T ss_pred CccCh
Confidence 88554
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=5.8e-20 Score=123.08 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=107.0
Q ss_pred CcEEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.++ +.+|..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++.+|..+..+.+|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEF---VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGG---GGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHHhC---CCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 689999999998 6789888999 9999999999 9999 89999999999999999998777766666889999999
Q ss_pred cCCcCCCCCC--CCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccCCeeeecCCC
Q 046299 78 GSCKMGPGFP--NPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 78 ~~n~l~~~~p--~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
++|++++ +| ..+..+++ |++|++++|+++ .++|++|++++|.+.. +|.
T Consensus 103 s~N~l~~-~~~~~~l~~l~~----------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 103 SGNKLKD-ISTLEPLKKLEC----------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp BSSSCCS-SGGGGGGSSCSC----------CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred cCCccCc-chhHHHHhcCCC----------CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 9999984 44 56766555 999999999998 3689999999999987 664
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=135.45 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=88.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..|..|..+ ++|++|++++ .+++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASF---PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CcEEECCCCccceECHhHccCC---CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4677777777777666777777 7777777777 7766 5677777777777777777654444566666777777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|.+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 7777777666666666666 66665 34566777777777665 3556666666666655
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=135.83 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=99.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNL---FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCEeChhhhhCC---ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 6899999999998889999999 9999999999 9988 5688999999999999999888888888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|.+++..|..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999998777888888887 78877 45677888888887776
No 34
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=4.9e-19 Score=121.37 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=100.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--c--cccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--D--IITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~--~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++++++|+++ .+|..+. .++++|++++ ++++ . .|+.+++|++|++++|++++..|..+..+.+|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 57899999995 4776543 5789999999 9988 2 388999999999999999988888898899999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP 136 (138)
+++|++++..|..+..+++ |++|++++|+|+ .++|++|++++|++++..|
T Consensus 85 Ls~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQ----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTT----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCC----------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999777777877665 999999999988 3688999999999987543
No 35
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.5e-18 Score=123.18 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=110.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
++++++++.++. +|..+. ++++.|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|++
T Consensus 17 ~~l~~~~~~l~~-~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 17 KEVDCQGKSLDS-VPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp TEEECTTCCCSS-CCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEEecCCCCccc-cCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 578999999975 666543 6799999999 9998 57999999999999999999888888888999999999
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeec
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~ 134 (138)
++|++++..|..+..+++ +|+++ ..+++|++|++++|+|+ .++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999999666677888888 89988 45789999999999998 37899999999999973
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=2.5e-19 Score=136.03 Aligned_cols=130 Identities=10% Similarity=0.111 Sum_probs=101.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+.+ ..|.++++|++|++++|.+++..|..+..+.+|++|
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRL---QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSC---TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred cCEEEecCCccCcCChhHhccC---ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5899999999999889999999 9999999999 8875 569999999999999999998889999999999999
Q ss_pred EecCCcCCCCCCCC--CCCCCC--eEEec-------------cCCCceeEEEeeCCccc-----------CCCCcEEEcc
Q 046299 76 ILGSCKMGPGFPNP--IPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-----------SQSWTIIDLG 127 (138)
Q Consensus 76 ~l~~n~l~~~~p~~--~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-----------~~~L~~L~Ls 127 (138)
++++|++++.+|.. +..+++ +|+++ ..+++|++|++++|+++ ..+++.++++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755554 777766 55554 23455555555555554 1344555555
Q ss_pred CCeeee
Q 046299 128 INKFSG 133 (138)
Q Consensus 128 ~N~l~g 133 (138)
+|.+++
T Consensus 189 ~n~l~~ 194 (455)
T 3v47_A 189 SITLQD 194 (455)
T ss_dssp TCBCTT
T ss_pred cCcccc
Confidence 555544
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.7e-19 Score=139.30 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=67.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC-C------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS-G------------ 65 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~-~------------ 65 (138)
|++|++++|.+++..|..|+.+ ++|++|+|++ .+++ ..|+.+++|++|++++|.+++..+. .
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTC---TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCC---CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 5789999999999888899999 9999999999 9988 5588888888888888877543211 0
Q ss_pred ---CccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 66 ---WIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 66 ---~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
...+.+|++|++++|.+++..|..++.++. +|+++
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 001224555555555555444545554444 55554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=8.3e-19 Score=131.27 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=87.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..+..+.+|++|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYA---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCcccccChhhccCC---CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 5677777777777666677777 7788888877 7776 4577777888888888877643333356677788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc----CCCCcEEEccCCeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV----SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~----~~~L~~L~Ls~N~l~ 132 (138)
+++|++++..|..+..+++ +|+++ ..+++|+.+++++|.++ +.+++.|++++|.++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 8888877666666777666 67766 34556666666666555 344555555555544
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=5.3e-19 Score=138.60 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=82.8
Q ss_pred CcEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..| ..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++ .+|..+..+.+|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSL---EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTC---TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCeeECCCCccCCccChhhhhcc---ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 4556666666655554 455566 6666666666 6655 456666666666666666665 35556666666777
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
|++++|++++..|.++..+++ +|+++ ..+++|++|++++|+++ +++|+++++++|++
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 777777776666666666666 66665 34566777777777766 13477777777776
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
.+.
T Consensus 558 ~c~ 560 (606)
T 3vq2_A 558 ACI 560 (606)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=7e-19 Score=138.48 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=98.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..|..+.+|++|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYA---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCCCChHHhcCC---CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 5788999999988777788888 8999999998 8888 5678899999999999988755555567788899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc----CCCCcEEEccCCeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV----SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~----~~~L~~L~Ls~N~l~ 132 (138)
+++|.+++..|..+..+++ +|+++ +.+++|+.|++++|.++ +.+++.|++++|.++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 9999998777778888887 88887 44566666666666665 444555555555443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=8e-19 Score=137.59 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|.++ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred cCEEECCCCCcCEeChhhccCC---ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5789999999998888889999 9999999999 8888 6789999999999999999888888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---C----------CCCcEEEccC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---S----------QSWTIIDLGI 128 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---~----------~~L~~L~Ls~ 128 (138)
+++|++++..|..++++++ +|+++ +.+++|++|++++|+++ + ..+.++++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999998666677888887 77776 45677888888888877 1 1144788888
Q ss_pred Ceeee
Q 046299 129 NKFSG 133 (138)
Q Consensus 129 N~l~g 133 (138)
|.+++
T Consensus 191 n~l~~ 195 (606)
T 3vq2_A 191 NPIDF 195 (606)
T ss_dssp CCCCE
T ss_pred CCcce
Confidence 88876
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.7e-18 Score=132.04 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=85.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCcccc------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF------ 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~------ 70 (138)
|++|++++|++++..|..|.++ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGL---ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcChhhccCc---ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 5788888888887777788888 8888888888 8777 4577788888888888887655444444444
Q ss_pred -------------------CcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 71 -------------------QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 71 -------------------~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+|++|++++|+++ .+| .+..+++ +|+++ ..+++|++|++++|+++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 4555555555554 233 2334444 55554 44566667777777666
Q ss_pred ---------CCCCcEEEccCCeeee
Q 046299 118 ---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g 133 (138)
.++|+.|+|++|++++
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred eECHHHhcCCCCCCEEECCCCcCCc
Confidence 3567777777777775
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=142.73 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=113.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
+++|||++|.+++..|..|..+ ++|++|++++ ...+ ..|.++++|++|++++|.+++..|..+..+.+|++|
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l---~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFL---EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSC---CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred cCEEECCCCcCCccChhHCccc---ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 5799999999999889999999 9999999999 6665 679999999999999999998889999999999999
Q ss_pred EecCCcCCCCCCCC--CCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------C--CCCcEEEcc
Q 046299 76 ILGSCKMGPGFPNP--IPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------S--QSWTIIDLG 127 (138)
Q Consensus 76 ~l~~n~l~~~~p~~--~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~--~~L~~L~Ls 127 (138)
++++|.+++.+|.. +..+++ +||++ +.+++|++|++++|+++ . ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999877765 888888 88887 45788999999999886 1 566777777
Q ss_pred CCeeeecCC
Q 046299 128 INKFSGQYP 136 (138)
Q Consensus 128 ~N~l~g~iP 136 (138)
.|.+++.+|
T Consensus 183 ~n~l~~~~~ 191 (844)
T 3j0a_A 183 ANSLYSRVS 191 (844)
T ss_dssp CSBSCCCCC
T ss_pred CCccccccc
Confidence 777666544
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.1e-18 Score=125.19 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=92.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.+++..+ .+.+ ++|++|++++ +++. ..+..+++|++|++++|++++..+..|..+.+|++|++
T Consensus 57 L~~L~L~~n~l~~~~~--~~~l---~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 57 LTQLNLDRAELTKLQV--DGTL---PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp CCEEECTTSCCCEEEC--CSCC---TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCcccC--CCCC---CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 5677777777765332 2566 7777777777 7776 55667777777777777776555566666777777777
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
++|++++..+..+..+++ +|+++ ..+++|++|++++|+|+ ..+++.+++++|++..
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 777777444444566665 67766 34678999999999998 3579999999999864
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=6.2e-19 Score=139.92 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=112.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..+..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..+..+.+|++|+
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRY---SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGG---TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CcEEECCCCCCCCcCHHHHhCC---CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5789999999988777788899 9999999999 8887 6688899999999999999765555688888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc-----------CCCCcEEEccCCee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-----------SQSWTIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-----------~~~L~~L~Ls~N~l 131 (138)
+++|++++..|..++.+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999998666677888888 88887 35778999999999887 26789999999999
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
++..|
T Consensus 184 ~~~~~ 188 (680)
T 1ziw_A 184 KEFSP 188 (680)
T ss_dssp CCBCT
T ss_pred cccCh
Confidence 88554
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=129.74 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=69.7
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCC-CCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFS-SGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~~~~L~~L~ 76 (138)
++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|+++...+ ..+..+.+|++|+
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSL---GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CEEECCCCccCccCHhhcCCC---CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 445555555554444445555 5555555555 5554 224555555555555555542222 2344455555555
Q ss_pred ecCC-cCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 77 LGSC-KMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n-~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
+++| .+++..|..+..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|.++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 5555 244333444555554 55554 34556667777777665 367777888887777
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 236 ~ 236 (353)
T 2z80_A 236 T 236 (353)
T ss_dssp T
T ss_pred c
Confidence 6
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=130.82 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCcccc------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF------ 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~------ 70 (138)
|++|+|++|.+++..+..|.++ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGL---ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTC---SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCccChhhccCC---ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 5677777777777666777777 7777777777 7776 4577777777777777777654444444444
Q ss_pred -------------------CcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 71 -------------------QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 71 -------------------~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+|++|++++|+++ .+|. +..+++ +|+++ ..+++|+.|++++|+++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 4555555555554 3432 334444 55555 34566677777777666
Q ss_pred ---------CCCCcEEEccCCeeeecCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP 136 (138)
.++|+.|+|++|++++ +|
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 271 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTL-LP 271 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCC-CC
T ss_pred EEChhhhcCCCCCCEEECCCCCCCc-cC
Confidence 3667778888887776 44
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=4e-19 Score=130.06 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=49.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTF 60 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~ 60 (138)
|++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|..+++|++|++++|.+++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTC---TTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred CCEEECcCCccCcCCHHHhhCC---CcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc
Confidence 5789999999998777889999 9999999999 9988 558888899999998888764
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=135.36 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=105.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCC-CCccccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSS-GWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~L~ 73 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++.+|. .+..+.+|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHL---TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCC---SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred ccEEEeECCccChhhhhhhccC---CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5789999999998888999999 9999999999 9886 4588999999999999999875554 366777899
Q ss_pred eEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 74 TIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+|++++|++++.+|..+. ++ +|+++ ..+++|++|++++|+|+ .++|++|++++|++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 999999999888777764 23 67776 45678888888888887 25688888888888
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
++.
T Consensus 481 ~c~ 483 (520)
T 2z7x_B 481 DCS 483 (520)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=135.78 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=95.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++. |..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++..|..+..+.+|++|
T Consensus 375 L~~L~l~~n~l~~~-~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 375 LKYLDLSFNGVITM-SSNFLGL---EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CCEEECCSCSEEEE-EEEEETC---TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCEEECCCCccccc-ccccccc---CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 45666666666553 3336666 7777777777 6665 356677777777777777776667677777777777
Q ss_pred EecCCcCC-CCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMG-PGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~-~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|+++ +.+|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 77777776 457777777776 77776 45677899999999887 36788999999999
Q ss_pred eecCCC
Q 046299 132 SGQYPR 137 (138)
Q Consensus 132 ~g~iP~ 137 (138)
++.+|.
T Consensus 531 ~~~~~~ 536 (570)
T 2z63_A 531 DCSCPR 536 (570)
T ss_dssp CCCTTT
T ss_pred cCCCcc
Confidence 887764
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.3e-18 Score=126.30 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=68.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|+.+ ++|++|++++ ++++ ..|+.+++|++|++++|.++ .+|..+. .+|++|+
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CeEEECCCCcCCEeChhhhccC---CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 5678899999888777788888 8999999988 8887 67888889999999988886 4554443 3667777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
+++|++++..+..+..+++ +++++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCcccccCHhHhcCCccccEEECC
Confidence 7777666444444454444 45544
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=2e-19 Score=142.70 Aligned_cols=128 Identities=11% Similarity=0.217 Sum_probs=82.6
Q ss_pred CcEEEccCccccCc-----------------CCcccc--CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc
Q 046299 1 MKDLFVGNNRLNGT-----------------LTKASD--SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL 57 (138)
Q Consensus 1 L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~ 57 (138)
|++|++++|.+++. +|+.++ ++ ++|++|++++ ++.+ ..|+++++|++|++++|+
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL---KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC---TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhccc---CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56778888887775 777777 77 7788888877 7666 567777777777777776
Q ss_pred -cce-eCCCCCccc------cCcceEEecCCcCCCCCCC--CCCCCCC--eEEec-----------cCCCceeEEEeeCC
Q 046299 58 -RTF-NFSSGWIPP------FQLNTIILGSCKMGPGFPN--PIPEMPH--DVLIS-----------SFQQYVFRVDIYFQ 114 (138)
Q Consensus 58 -l~~-~~~~~~~~~------~~L~~L~l~~n~l~~~~p~--~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N 114 (138)
+++ .+|..+..+ .+|++|++++|+++ .+|. .++.+++ +|+++ +.+++|++|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 766 666655544 56777777777776 6666 6666665 56555 12234555555555
Q ss_pred ccc--------CCC-CcEEEccCCeee
Q 046299 115 QYV--------SQS-WTIIDLGINKFS 132 (138)
Q Consensus 115 ~l~--------~~~-L~~L~Ls~N~l~ 132 (138)
+++ .++ |++|++++|+++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred ccccccHhhhhhcccCcEEEccCCcCc
Confidence 554 123 555555555554
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=2.8e-19 Score=130.58 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=112.4
Q ss_pred CcEEEccCccc-cCcCCcccc-------CCCCCCCccEEEccc-cccc---ccc--cCCCCCCEEEcccCccceeCCCCC
Q 046299 1 MKDLFVGNNRL-NGTLTKASD-------SFPSFSFWTSLIILR-KLAG---DII--TNLSRLAHMDLSFDLRTFNFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l-~~~~p~~~~-------~l~~~~~L~~L~Ls~-~l~~---~~~--~~l~~L~~L~ls~N~l~~~~~~~~ 66 (138)
|++|++++|.+ .+.+|..+. .+ ++|++|++++ ++++ ..+ ..+++|++|++++|++++. |..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGI---SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTT---SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCc---CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence 35678999998 455777665 78 9999999999 9987 443 8999999999999999876 7666
Q ss_pred ccc-----cCcceEEecCCcCCCCCCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc------
Q 046299 67 IPP-----FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV------ 117 (138)
Q Consensus 67 ~~~-----~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~------ 117 (138)
..+ .+|++|++++|++++..|..++.+++ +|+++ ..+++|++|++++|+|+
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 665 79999999999999777789999988 99988 35689999999999998
Q ss_pred ------CCCCcEEEccCCeeeecCC
Q 046299 118 ------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~g~iP 136 (138)
.++|++|++++|++++.+|
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHHhcCCCCCEEECCCCcCCcccc
Confidence 2799999999999998654
No 54
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.2e-17 Score=115.20 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=107.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.++.+++.++. +|..+ . +++++|++++ ++++ ..|..+++|++|++++|+++...+..+..+.+|++|++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--P---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccC-CCCCC--C---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 467888888865 55443 4 7899999999 9998 56899999999999999998666666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeec
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~ 134 (138)
++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|.+.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 999999655556788887 88887 45689999999999988 36899999999999887
Q ss_pred CC
Q 046299 135 YP 136 (138)
Q Consensus 135 iP 136 (138)
.|
T Consensus 164 ~~ 165 (208)
T 2o6s_A 164 CP 165 (208)
T ss_dssp TT
T ss_pred CC
Confidence 66
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=130.72 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=107.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..+..+ ++|++|++++ ++++ ..|+++++|++|++++|+++...+..+..+.+|++|+
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred CcEEECCCCcCcccCHHHhccC---CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 5789999999988777789999 9999999999 9998 5699999999999999999854444477788999999
Q ss_pred ecCCcCCCCCCC--CCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCe
Q 046299 77 LGSCKMGPGFPN--PIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINK 130 (138)
Q Consensus 77 l~~n~l~~~~p~--~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~ 130 (138)
+++|+++ .+|. .+..+++ +++++ ..+++|++|++++|+++ .++|++|++++|+
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999998 5665 6777777 77776 45678888999988887 3678888898888
Q ss_pred eee
Q 046299 131 FSG 133 (138)
Q Consensus 131 l~g 133 (138)
++.
T Consensus 210 l~~ 212 (353)
T 2z80_A 210 HIL 212 (353)
T ss_dssp STT
T ss_pred ccc
Confidence 753
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.1e-18 Score=135.14 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEcccCccceeCCCC-CccccCcceEEecCCcCCCCCCCCCCCCCC
Q 046299 42 ITNLSRLAHMDLSFDLRTFNFSSG-WIPPFQLNTIILGSCKMGPGFPNPIPEMPH 95 (138)
Q Consensus 42 ~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 95 (138)
|..+++|++|++++|.+++..+.. +..+.+|++|++++|.+++..|..+..+++
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 333444444444444433332222 333334444444444444333444444433
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.7e-18 Score=125.88 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=91.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..+..+..+ ++|++|++++ .++. ..|.++++|++|++++|.++ .+|..+. .+|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~ 196 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTE 196 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTC---TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSE
T ss_pred ccEEECCCCcccccCHhHhcCC---ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCE
Confidence 4566677777766555667777 8888888887 7753 56777778888888887775 3444433 46777
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 888888777666677777766 77776 34567888888888777 356778888888887
Q ss_pred ecCC
Q 046299 133 GQYP 136 (138)
Q Consensus 133 g~iP 136 (138)
+ +|
T Consensus 277 ~-~~ 279 (330)
T 1xku_A 277 A-IG 279 (330)
T ss_dssp C-CC
T ss_pred c-cC
Confidence 6 44
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=1.8e-19 Score=142.94 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=104.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc----ccccCC------CCCCEEEcccCccceeCCC--CC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG----DIITNL------SRLAHMDLSFDLRTFNFSS--GW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~----~~~~~l------~~L~~L~ls~N~l~~~~~~--~~ 66 (138)
|++|++++|++.+.+|+.++++ ++|++|++++ + +++ ..++.+ ++|++|++++|+++ .+|. .+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKAL---PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTC---SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred CCEEEecCCcCCccChHHHhcC---CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 6899999999999999999999 9999999999 7 875 444444 88888888888887 7777 77
Q ss_pred ccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCc-eeEEEeeCCccc--C--------CCCc
Q 046299 67 IPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQY-VFRVDIYFQQYV--S--------QSWT 122 (138)
Q Consensus 67 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~-L~~L~ls~N~l~--~--------~~L~ 122 (138)
..+.+|++|++++|+++|.+| .+..+++ +|+++ ..+++ |++|++++|+++ | ++|+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 788888888888888888888 7766666 77776 34456 888888888877 1 2577
Q ss_pred EEEccCCeeeecCCC
Q 046299 123 IIDLGINKFSGQYPR 137 (138)
Q Consensus 123 ~L~Ls~N~l~g~iP~ 137 (138)
+|++++|+++|.+|.
T Consensus 406 ~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 406 AIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECCSSCTTTTTTC
T ss_pred EEECcCCcCCCcchh
Confidence 788888887776553
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=134.14 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCC-CCccccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSS-GWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~L~ 73 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++.+|. .+..+.+|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTL---KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSC---SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred ceEEECCCCccccchhhhhccc---CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 5788999999988888888888 9999999998 8886 3578899999999999998874554 466677888
Q ss_pred eEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 74 TIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+|++++|++++.+|..+. ++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999988877777664 23 66666 34567788888888777 24677788888877
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
++.
T Consensus 510 ~c~ 512 (562)
T 3a79_B 510 DCT 512 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=3.5e-18 Score=124.80 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++. +. +..+ ++|++|++++ ++++ ..+..+++|++|++++|.+++. + .+..+.+|++|+++
T Consensus 65 L~~L~L~~n~i~~~-~~-~~~l---~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 65 LIGLELKDNQITDL-AP-LKNL---TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLD 137 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTC---CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECC
T ss_pred CCEEEccCCcCCCC-hh-HccC---CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECC
Confidence 34555555555442 22 4445 5555555555 5554 4455555555555555554322 1 13334444444444
Q ss_pred CCcCC
Q 046299 79 SCKMG 83 (138)
Q Consensus 79 ~n~l~ 83 (138)
+|+++
T Consensus 138 ~n~l~ 142 (308)
T 1h6u_A 138 LNQIT 142 (308)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 44444
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=7.1e-19 Score=128.30 Aligned_cols=81 Identities=12% Similarity=-0.044 Sum_probs=62.9
Q ss_pred CcEEEccCccccCcCCccc--cCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKAS--DSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~--~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 70 (138)
|++|++++|.+++..|..+ +.+ ++|++|++++ .+++ ..+..+++|++|++++|.+++..+..+..+.
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATG---LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCC---BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred eeEEEeeCCEeccchhhhhhhccC---CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 5788999999988888877 777 8888888888 7775 2334677888888888888776667777777
Q ss_pred CcceEEecCCcCCC
Q 046299 71 QLNTIILGSCKMGP 84 (138)
Q Consensus 71 ~L~~L~l~~n~l~~ 84 (138)
+|++|++++|++.+
T Consensus 170 ~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 170 ALTSLDLSDNPGLG 183 (310)
T ss_dssp TCCEEECCSCTTCH
T ss_pred CCCEEECCCCCCcc
Confidence 88888888887653
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=132.03 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=110.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..+.+|.++ ++|++|++++ ++++ ..|+++++|++|++++|.++...|..+..+.+|++|+
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTC---SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccEEEccCCccCccChhHhhCC---CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 5789999999998888889999 9999999999 9988 6799999999999999999888888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCC----cEEEccC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSW----TIIDLGI 128 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L----~~L~Ls~ 128 (138)
+++|++++..+..++.+++ +|+++ +.+++|++|++++|+++ ..++ +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999998544446888877 77776 34567888888888876 1344 6788888
Q ss_pred CeeeecCC
Q 046299 129 NKFSGQYP 136 (138)
Q Consensus 129 N~l~g~iP 136 (138)
|.+++..|
T Consensus 187 n~l~~~~~ 194 (570)
T 2z63_A 187 NPMNFIQP 194 (570)
T ss_dssp CCCCEECT
T ss_pred CCceecCH
Confidence 88877433
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=8.6e-19 Score=135.89 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=103.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred ccEEECcCCccCccChhhhhcC---CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 5789999999998888899999 9999999999 9988 5799999999999999999877766688888999999
Q ss_pred ecCCcCCC-CCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 77 LGSCKMGP-GFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+++|++++ .+|..++.+++ +|+++ ..+++|++|++++|+++ .++|+.|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999985 35677888777 55554 34556677777777665 24566666666665
Q ss_pred e
Q 046299 132 S 132 (138)
Q Consensus 132 ~ 132 (138)
.
T Consensus 185 ~ 185 (549)
T 2z81_A 185 A 185 (549)
T ss_dssp T
T ss_pred c
Confidence 3
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.4e-18 Score=121.12 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=103.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc---ccccCCCCCCEEEccc-CccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG---DIITNLSRLAHMDLSF-DLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~---~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~~~L~~ 74 (138)
+++|++++|++++..+..|+.+ ++|++|++++ + +++ ..|.++++|++|++++ |.++...+..|..+.+|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l---~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNL---PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTC---TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred ccEEEEeCCcceEECHHHccCC---CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 5789999999998777789999 9999999999 7 877 5799999999999999 9998777778888899999
Q ss_pred EEecCCcCCCCCCCCCCCCCC-----eEEec-------------cCCCcee-EEEeeCCccc--------CCCCcEEEcc
Q 046299 75 IILGSCKMGPGFPNPIPEMPH-----DVLIS-------------SFQQYVF-RVDIYFQQYV--------SQSWTIIDLG 127 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~-----~L~ls-------------~~l~~L~-~L~ls~N~l~--------~~~L~~L~Ls 127 (138)
|++++|++++ +|. +..+.+ +++++ ..+++|+ +|++++|+++ .++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999999984 776 555443 34443 3456777 8888888777 2457778888
Q ss_pred CCe-eee
Q 046299 128 INK-FSG 133 (138)
Q Consensus 128 ~N~-l~g 133 (138)
+|+ +++
T Consensus 188 ~n~~l~~ 194 (239)
T 2xwt_C 188 KNKYLTV 194 (239)
T ss_dssp TCTTCCE
T ss_pred CCCCccc
Confidence 884 765
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=129.23 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=82.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCC----CCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSS----GWIP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~----~~~~ 68 (138)
|++|++++|++++..|..++.+ ++|++|++++ ++.+ ..+..+++|++|++++|+++. ++. .+..
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAF---PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCC---TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred CCEEEeeCCCcchhhHHHhccC---CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 5678888888877777777777 8888888888 7654 223677788888888887752 121 1234
Q ss_pred ccCcceEEecCCcCCCCCCCCCCCCC---C--eEEec---------cCCCceeEEEeeCCccc-------CCCCcEEEcc
Q 046299 69 PFQLNTIILGSCKMGPGFPNPIPEMP---H--DVLIS---------SFQQYVFRVDIYFQQYV-------SQSWTIIDLG 127 (138)
Q Consensus 69 ~~~L~~L~l~~n~l~~~~p~~~~~l~---~--~L~ls---------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls 127 (138)
+.+|++|++++|++++..|+.+..+. + +|+++ ...++|++|++++|+|+ .++|+.|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 56788888888888876677776653 3 44444 11234555555555555 2445555555
Q ss_pred CCeee
Q 046299 128 INKFS 132 (138)
Q Consensus 128 ~N~l~ 132 (138)
+|+|+
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 55554
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=6.3e-18 Score=134.16 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=97.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKL---PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcEEECCCCccCccCHHHHhcc---cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 6789999999999888889999 9999999999 8888 4689999999999999999877777888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec--------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS--------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls--------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|.+++..|..++.+++ +|+++ ..+++|++|++++|+++
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 9999998888888888887 88887 13467888888888765
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=7.6e-19 Score=115.45 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CcEEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.++ +.+|..++.+ ++|++|++++ .+++ ..++.+++|++|++++|.+++.+|..+..+.+|++|++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTC---TTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CeEEEccCCcCChhHHHHHHhhc---CCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 578999999998 6788888999 9999999999 9999 88999999999999999998767776666889999999
Q ss_pred cCCcCCCC-CCCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccC
Q 046299 78 GSCKMGPG-FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGI 128 (138)
Q Consensus 78 ~~n~l~~~-~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~ 128 (138)
++|++++. .|..+..+++ |++|++++|+++ .++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~----------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLEN----------LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTT----------CCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCC----------CCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999852 3366766554 999999999987 36788888764
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=118.40 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=96.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|++++..|..+..+.+|++|+
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGA---SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCEEECCCCcCCEECHHHhCCC---CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 6899999999999888899999 9999999999 9998 5699999999999999999988899999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..|..+..+++ |++|++++|.++
T Consensus 136 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHS----------LSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTT----------CCEEECCSCCEE
T ss_pred CCCCcCCEECHHHhcCCCC----------CCEEEecCcCCc
Confidence 9999999877888887766 999999999987
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=7.6e-18 Score=123.03 Aligned_cols=124 Identities=13% Similarity=0.177 Sum_probs=106.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++ +| .++.+ ++|++|++++ ++++ ..+..+++|++|++++|.+++..+ +..+.+|++|+++
T Consensus 87 L~~L~L~~n~l~~-~~-~~~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 87 ITELELSGNPLKN-VS-AIAGL---QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECCSCCCSC-CG-GGTTC---TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCEEEccCCcCCC-ch-hhcCC---CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 6899999999976 33 68888 9999999999 9999 779999999999999999975443 6777899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ ++. +..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 160 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 999984 554 777777 88887 56788999999999998 4789999999999987
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.3e-18 Score=122.62 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=76.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++..+ +..+ ++|++|++++ ++++ ..+..+++|++|++++|+++.. +.+..+.+|++|+++
T Consensus 70 L~~L~L~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 70 VTKLFLNGNKLTDIKP--LANL---KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp CCEEECCSSCCCCCGG--GTTC---TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCEEEccCCccCCCcc--cccC---CCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 4566666666655332 5566 6666666666 6666 5566666666666666666532 244555566667777
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ + ..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|+++.
T Consensus 143 ~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 666663 2 34555555 66665 44566777777777766 3567777777777654
No 71
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=6.4e-18 Score=115.77 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=94.8
Q ss_pred CcEEEccCccccCcCCc-cccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTK-ASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~-~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
+++|++++|+|++..+. .|+.+ ++|++|++++ ++++ ..|.++++|++|++++|++++..+..+..+.+|++|
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRL---PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCEEECCCCcCCccCCccccccC---CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 57999999999886664 48899 9999999999 9998 689999999999999999998888889899999999
Q ss_pred EecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 76 ILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++++|++++..|..+..+++ |++|++++|.++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~ 139 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNS----------LTSLNLASNPFN 139 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTT----------CCEEECTTCCBC
T ss_pred ECCCCcCCeeCHHHhhcCCC----------CCEEEeCCCCcc
Confidence 99999999888988887766 999999999987
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=113.79 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=91.1
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.+++++|.++. +|..+ . +++++|++++ +++. ..|.++++|++|++++|.+++..+..|..+.+|++|+++
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--P---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc-CCCCC--C---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 467888888864 66543 2 5788888888 8887 678888888888888888887777778888888888888
Q ss_pred CCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..|..+..+++ |++|++++|+|+ .++|+.|++++|++..
T Consensus 87 ~N~l~~i~~~~f~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKS----------LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTT----------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCC----------CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888666666776655 888888888887 3578888888888764
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=6.1e-18 Score=131.10 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=97.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~L 75 (138)
|++|++++|++++..|++|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.+++ ..|..+..+.+|++|
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSL---GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred ccEEECCCCCcCccChhhcccc---ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 5788899998888777888888 8888888888 8888 448888888888888888865 356677777788888
Q ss_pred EecCCcCCCCCC-CCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGPGFP-NPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~~~p-~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|++.+.+| ..+..+++ +|+++ +.+++|++|++++|.+. .++|++|++++|++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 888887444555 46777776 77766 34566777777777665 35677777777776
Q ss_pred ee
Q 046299 132 SG 133 (138)
Q Consensus 132 ~g 133 (138)
++
T Consensus 209 ~~ 210 (549)
T 2z81_A 209 AR 210 (549)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 74
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=1.4e-17 Score=112.41 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=94.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|+++. +|..+ . ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|++
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--P---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCcc-CCCCC--C---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 568888998865 55433 4 6789999999 8888 45788999999999999998666666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCC
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP 136 (138)
++|++++..+..+..+++ |++|++++|+++ .++|++|++++|++++..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~----------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQ----------LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcc----------cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998655555666555 999999999888 3678899999999887543
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=6.2e-18 Score=124.16 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=71.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.++ .+|..+. .+|++|+
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGL---QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CeEEECCCCcCCccCHhHhhCC---CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 5788888888887777788888 8888888888 8887 67888888888888888886 5555444 4788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
+++|++++..+..+..+++ +++++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCccCccCHhHhCCCccCCEEECC
Confidence 8888887444445666666 66665
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=132.49 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|..+ ++|++|++++ ++++ ..|+++++|++|++++|+++ .+|.. .+.+|++|+
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSL---SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTC---TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccEEECCCCcccccChhhcccc---ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 5788888888887777788888 8888888888 8887 57888888888888888887 45554 667888888
Q ss_pred ecCCcCCC-CCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------CCCC--cEEEccCCee
Q 046299 77 LGSCKMGP-GFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------SQSW--TIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------~~~L--~~L~Ls~N~l 131 (138)
+++|++++ .+|..++.+++ |++|++++|+++ .+++ +.|++++|.+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~----------L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQ----------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTT----------CCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCc----------ceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 88888876 46777877766 555555555554 2344 5555555554
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.6e-18 Score=118.85 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=99.6
Q ss_pred CcEEEccCcc-ccCcCCccccCCCCCCCccEEEccc--cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcc-
Q 046299 1 MKDLFVGNNR-LNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLN- 73 (138)
Q Consensus 1 L~~L~Ls~N~-l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~- 73 (138)
|++|++++|+ +++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|.+++ +|. +..+.+|+
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l---~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNL---SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESC---TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CcEEeCCCCCCcceeCHhHcCCC---cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 5788888886 777666678888 8888888874 6666 567888888888888888865 554 66666777
Q ss_pred --eEEecCC-cCCCCCCCCCCCCCC---eEEec-----------cCCCceeEEEeeCCc-cc---------C-CCCcEEE
Q 046299 74 --TIILGSC-KMGPGFPNPIPEMPH---DVLIS-----------SFQQYVFRVDIYFQQ-YV---------S-QSWTIID 125 (138)
Q Consensus 74 --~L~l~~n-~l~~~~p~~~~~l~~---~L~ls-----------~~l~~L~~L~ls~N~-l~---------~-~~L~~L~ 125 (138)
+|++++| ++++..+..+..+++ +++++ ...++|+.|++++|+ ++ . ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 8888888 887555555776666 36665 122689999999995 87 3 6899999
Q ss_pred ccCCeeeecCCC
Q 046299 126 LGINKFSGQYPR 137 (138)
Q Consensus 126 Ls~N~l~g~iP~ 137 (138)
+++|++++ +|.
T Consensus 212 l~~N~l~~-l~~ 222 (239)
T 2xwt_C 212 VSQTSVTA-LPS 222 (239)
T ss_dssp CTTCCCCC-CCC
T ss_pred CCCCcccc-CCh
Confidence 99999987 764
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1e-17 Score=125.35 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=111.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++++|.++...+..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++..|..+..+.+|++|+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSF---RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHC---CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEecCCchhhCChhHhccc---ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 5789999999987655567889 9999999999 9988 5899999999999999999988888888999999999
Q ss_pred ecCCcCCCCCCCC-CCCCCC--eEEec------------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNP-IPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~-~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g 133 (138)
+++|+++ .+|.. +..+++ +|+++ ..+++|++|++++|+++ .++++.+++++|.+++
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 9999998 56655 577877 88887 45678899999999887 5788899999998876
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.2e-18 Score=142.52 Aligned_cols=128 Identities=10% Similarity=0.183 Sum_probs=76.2
Q ss_pred CcEEEccCccccC-----------------cCCcccc--CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc
Q 046299 1 MKDLFVGNNRLNG-----------------TLTKASD--SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL 57 (138)
Q Consensus 1 L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~ 57 (138)
|++|+|++|+|++ .+|+.++ ++ ++|++|++++ ++.+ ..|+++++|++|++++|+
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L---~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC---TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccC---CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4667777777766 2666665 66 7777777776 6655 556667777777777776
Q ss_pred -cce-eCCCCCcccc-------CcceEEecCCcCCCCCCC--CCCCCCC--eEEec----------cCCCceeEEEeeCC
Q 046299 58 -RTF-NFSSGWIPPF-------QLNTIILGSCKMGPGFPN--PIPEMPH--DVLIS----------SFQQYVFRVDIYFQ 114 (138)
Q Consensus 58 -l~~-~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~--~~~~l~~--~L~ls----------~~l~~L~~L~ls~N 114 (138)
+++ .+|..+..+. +|++|++++|+++ .+|. .++.+++ .|+++ +.+++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 665 5555444333 5666666666665 5665 5555555 55555 33445555555555
Q ss_pred ccc--------CCC-CcEEEccCCeee
Q 046299 115 QYV--------SQS-WTIIDLGINKFS 132 (138)
Q Consensus 115 ~l~--------~~~-L~~L~Ls~N~l~ 132 (138)
+++ .++ |+.|++++|+++
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccccchHHHhhccccCCEEECcCCCCC
Confidence 554 133 555555555554
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8.2e-18 Score=131.51 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.++++.|.+.+..|..+..+ +.+++|++++ ++.. ..|..+++|++|++++|++++..|..|..+.+|++|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~---~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTC---TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccc---hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 3567777777777777777777 7888888877 5433 567788888888888888877777777777788888
Q ss_pred EecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
++++|+|++..|..+..+++ |++|++++|+|+ +++|++|++++|+++.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~----------L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNS----------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTT----------CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCCCChhHHhCCCC----------CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88888887666666666554 999999999998 3679999999999874
No 81
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.2e-17 Score=115.10 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=100.2
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.++.++++++. +|..+ . ++|++|++++ ++++ ..|..+++|++|++++|+++...+..+..+.+|++|++
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--P---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEeEccCCCcCc-cCCCC--C---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 468899999964 67644 3 7899999999 9998 67999999999999999997666666788899999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
++|++++..+..+..+++ |++|++++|+|+ .++|+.|++++|+|++ +|
T Consensus 96 s~N~l~~l~~~~~~~l~~----------L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~ 151 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVH----------LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IP 151 (229)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CC
T ss_pred CCCcCCccChhHhCcchh----------hCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cC
Confidence 999999655555676655 999999999998 4789999999999997 55
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=1e-17 Score=123.04 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=72.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..+..+..+ ++|++|++++ .++. ..|..+ +|++|++++|.+++ +|..+. .+|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~ 197 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGL---RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSC---SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred CCEEECCCCccCccCHhHhCCC---ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence 4556666666655444556666 6677777766 6642 344444 45555555554432 333222 35666
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 666666666544455555555 55555 34556777777777766 356677777777776
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 278 ~ 278 (332)
T 2ft3_A 278 K 278 (332)
T ss_dssp B
T ss_pred c
Confidence 5
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.5e-17 Score=116.27 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=94.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|..+ ++|++|+|++ ++++ ..|.++++|++|++++|++++..|..+..+.+|++|+
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGL---RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHHHhhCC---cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 6899999999999889999999 9999999999 9998 5689999999999999999988888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ |++|++++|.+.
T Consensus 135 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRA----------IQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTT----------CCEEECCSSCEE
T ss_pred CCCCcCCEECHHHHhCCCC----------CCEEEeCCCCcC
Confidence 9999999666666776655 999999999987
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=8.3e-18 Score=125.17 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=103.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|+|++|+|++..|..|..+ ++|++|+|++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCEEECCCCcCCccChhhccCC---CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 6899999999999888889999 9999999999 9998 5799999999999999999988888999999999999
Q ss_pred ecCCcCCCCCCCCCC-CCCCeEEeccCCCceeEEEeeCCccc---------CCC--CcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIP-EMPHDVLISSFQQYVFRVDIYFQQYV---------SQS--WTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~-~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~--L~~L~Ls~N~l~g 133 (138)
+++|+++ .+|..+. .+. .+++|++|++++|+|+ .+. ++.|++++|++..
T Consensus 143 L~~N~l~-~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 143 LSQNQIS-RFPVELIKDGN-------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCSSCCC-SCCGGGTC-----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCcCC-eeCHHHhcCcc-------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999998 5666532 111 2455999999999998 122 4789999999864
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=130.62 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=74.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|+++ .+|.. .+.+|++|+
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFL---SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTC---TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred cCEEECCCCCccccChhhhccC---CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 3566666666666555566666 6666666666 6665 44666666666666666665 34433 455666666
Q ss_pred ecCCcCCC-CCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------CCCC--cEEEccCCee--eecCC
Q 046299 77 LGSCKMGP-GFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------SQSW--TIIDLGINKF--SGQYP 136 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------~~~L--~~L~Ls~N~l--~g~iP 136 (138)
+++|++++ .+|..+++++ +|++|++++|+++ .+++ ++|++++|.+ ++..|
T Consensus 128 Ls~N~l~~l~~p~~~~~l~----------~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLT----------KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCT----------TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred CCCCCccccCchHhhcccC----------cccEEecCCCccccCchhhhhhceeeEEEeecccccccccCc
Confidence 66666653 2345555544 4888888888776 3455 7888888877 55444
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3e-17 Score=117.53 Aligned_cols=123 Identities=12% Similarity=0.142 Sum_probs=102.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ ++++ ..+..+++|++|++++|++++ +|... . .+|++|+++
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFF---TNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGC---TTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred CcEEECcCCCccc-ch-HHhhC---CCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 6789999999975 55 68888 9999999999 9999 559999999999999999975 34322 2 689999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ +| .+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccC
Confidence 999984 44 5777777 88887 56788999999999988 5788999999999886
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.6e-17 Score=130.69 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=112.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.+++++|.+....+..+..+ ++|++|++++ .+++ ..|+.+++|++|++++|.+++..|..+..+.+|++|+
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSF---RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHC---CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCCCCCcCHHHHccC---CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4689999999987666678889 9999999999 9998 5899999999999999999988888888999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g 133 (138)
+++|.+++..+..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 9999999444444688887 88887 45678889999998887 5788889999888876
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5.5e-17 Score=120.20 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=100.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCE-EEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAH-MDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~-L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
+++|+|++|+|+.+.+.+|.++ ++|++|+|++ ++.+ ..|.+++++++ +.+++|+++...|..|..+.+|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l---~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGF---GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTC---TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCEEEccCCcCCCcCHHHHcCC---CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 5789999999987666789999 9999999999 8765 67889998875 666789998888888888999999
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec-------------cC-CCceeEEEeeCCccc---------------------
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS-------------SF-QQYVFRVDIYFQQYV--------------------- 117 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~-l~~L~~L~ls~N~l~--------------------- 117 (138)
|++++|+++...+..+..... .+++. .. ...++.|++++|+|+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 999999998544444444333 56554 11 134666666666665
Q ss_pred ------------CCCCcEEEccCCeeeecCCC
Q 046299 118 ------------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 ------------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
.++|++||+++|+|+. +|.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~ 219 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHS-LPS 219 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCC-CCS
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCc-cCh
Confidence 2467788888888876 664
No 89
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=7.3e-18 Score=137.91 Aligned_cols=130 Identities=11% Similarity=0.033 Sum_probs=103.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc----c-------cccCCCCCCEEEcccCccceeCCC--C
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG----D-------IITNLSRLAHMDLSFDLRTFNFSS--G 65 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~----~-------~~~~l~~L~~L~ls~N~l~~~~~~--~ 65 (138)
|++|+|++|.+.+.+|..++++ ++|++|++++ + +++ . .+..+++|++|++++|.++ .+|. .
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L---~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGC---SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCEEECcCCCCCccChHHHhCC---CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 6789999999999999999999 9999999998 7 764 2 3345558999999999887 7887 7
Q ss_pred CccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCc-eeEEEeeCCccc--C--------CCC
Q 046299 66 WIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQY-VFRVDIYFQQYV--S--------QSW 121 (138)
Q Consensus 66 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~-L~~L~ls~N~l~--~--------~~L 121 (138)
+..+.+|++|++++|+++ .+| .++.+++ .|+++ ..+++ |++|++++|+++ | .+|
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 888888888999888888 788 7777777 78877 33456 888888888887 1 237
Q ss_pred cEEEccCCeeeecCC
Q 046299 122 TIIDLGINKFSGQYP 136 (138)
Q Consensus 122 ~~L~Ls~N~l~g~iP 136 (138)
+.|++++|+++|.+|
T Consensus 647 ~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGR 661 (876)
T ss_dssp EEEECCSSCTTTTSS
T ss_pred CEEECcCCcCCCccc
Confidence 788888888877555
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.1e-17 Score=128.50 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=92.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|+|++|++++..| +..+ ++|+.|+|++ .+++ ..+..+++|++|++++|.++.. +.+..+.+|+.|+++
T Consensus 67 L~~L~Ls~N~l~~~~~--l~~l---~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP--LTNL---KNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp CCEEECTTSCCCCCGG--GGGC---TTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCChh--hccC---CCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence 5677888888776443 6777 7888888888 7777 7777788888888888877642 346666778888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|.+++ + ..+..+++ .|+++ ..+++|+.|+|++|+|+ .++|+.|+|++|++++
T Consensus 140 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 140 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCccCC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 888874 3 45666666 77777 45678888888888887 4788888898888876
No 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=5.1e-17 Score=124.32 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=74.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++..| +..+ ++|++|++++ .+++ ..+..+++|++|++++|++++..+ +..+.+|++|+++
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCEEECCCCccccchh--hhcC---CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 3455555555544322 4555 5566666666 5555 445566666666666666654332 4455566666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..| +..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 666664433 444444 56665 45667777777777776 3677778888887776
No 92
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=6.5e-17 Score=110.97 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=91.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|+ .+|..|..+ ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|+
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l---~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNY---KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCc-hhHHHhhcc---cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 578999999997 578899999 9999999999 9998 6799999999999999999988888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|+++...+..+..+++ |++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSA----------LSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTT----------CCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCcc----------ccEEEeCCCCee
Confidence 9999999544445766655 999999999987
No 93
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=9.6e-17 Score=108.20 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..++.+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKL---TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCcccEeCHHHhcCc---ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5799999999998777778999 9999999999 9998 5589999999999999999877776778888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ |++|++++|.++
T Consensus 107 l~~N~l~~~~~~~~~~l~~----------L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTS----------LQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTT----------CCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcc----------cCEEEecCCCee
Confidence 9999998544444565554 999999999987
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.72 E-value=1.5e-17 Score=112.29 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=97.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|+++. +|. +..+. ++|++|++++ .+++ ..|+.+++|++|++++|.+++..+..+..+.+|++|+++
T Consensus 21 L~~L~l~~n~l~~-i~~-~~~~~--~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IEN-LGATL--DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CCC-GGGGT--TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hHH-hhhcC--CCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5789999999985 554 55540 4999999999 9999 899999999999999999986544444778899999999
Q ss_pred CCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccCCeee
Q 046299 79 SCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 79 ~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~ 132 (138)
+|+++ .+|. .+..+++ |++|++++|.++ .++|+.||+++|.+.
T Consensus 97 ~N~i~-~~~~~~~l~~l~~----------L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKS----------LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTT----------CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCC-cchhhHhhhcCCC----------CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99996 6776 5665544 999999999987 478999999999764
No 95
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.9e-18 Score=138.03 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|+|++|.+. .+|..++.+ ++|++|+|++ .++. ..|+++++|++|+|++|.|+ .+|..+..+.+|++|+|
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKY---DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGC---CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CcEEECCCCCCC-CCChhhcCC---CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 456666666665 355555566 6666666666 6665 55666666666666666665 55666666666666666
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|.|+ .+|..|+.+++ |++|+|++|+|+
T Consensus 301 ~~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~ 329 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCN----------LQFLGVEGNPLE 329 (727)
T ss_dssp CSSCCC-CCCSSTTSCTT----------CCCEECTTSCCC
T ss_pred CCCCCC-ccChhhhcCCC----------ccEEeCCCCccC
Confidence 666665 56666655544 777777777766
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=7.8e-17 Score=116.86 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ ++++ ..+..+++|++|++++|.++. ++ .+..+.+|++|+++
T Consensus 48 L~~L~l~~~~i~~-~~-~~~~l---~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 48 IDQIIANNSDIKS-VQ-GIQYL---PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp CCEEECTTSCCCC-CT-TGGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred ccEEEccCCCccc-Ch-hHhcC---CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 6889999999976 44 48888 9999999999 9999 669999999999999999975 33 47788899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++ + +.+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++ +|
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~ 194 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR 194 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-Ch
Confidence 999984 4 45677777 88888 56789999999999988 4789999999999987 44
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=129.68 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=95.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..+..+ ++|+.|++++ ++++ ..|.++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETL---KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSC---CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred ccEEECCCCcccccChhhhhcC---CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5789999999998888889999 9999999999 9888 6789999999999999999888888888889999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc
Confidence 9999998666667888877 88887 33456666666666654
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.9e-17 Score=121.11 Aligned_cols=105 Identities=15% Similarity=0.023 Sum_probs=58.3
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceEEecCCcCCCCCCCCCCCCCC--eEE
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTIILGSCKMGPGFPNPIPEMPH--DVL 98 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ 98 (138)
++|++|++++ ++++ ..|+.+++|++|++++|.+++..+..+. .+.+|++|++++|++++ +|... .+++ +|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEE
Confidence 4455555555 5554 3444455555555555555444333332 23445555555555542 22221 1222 344
Q ss_pred ec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 99 IS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 99 ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
++ ..+++|++|++++|+++ .++|+.|++++|+++
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 43 23456889999999888 367889999999887
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.4e-17 Score=134.02 Aligned_cols=120 Identities=9% Similarity=0.082 Sum_probs=91.6
Q ss_pred cEEEccCccccC---------cCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccc
Q 046299 2 KDLFVGNNRLNG---------TLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPP 69 (138)
Q Consensus 2 ~~L~Ls~N~l~~---------~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~ 69 (138)
+.++|+.|.|.+ ..|+.+..+ +.|+.|+|++ .+.. ..+..+++|++|+|++|.|+ .+|..+..+
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l---~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDD---QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ----------------------------CC---CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred hcCccCcccccCccccccceecChhhhccC---CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 345555555543 347778888 9999999999 9888 56678999999999999998 888889999
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
.+|++|+|++|.|+ .+|..++.+++ |++|+|++|+|+ .++|+.|+|++|.|+|.+|
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQ----------LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTT----------CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCC----------CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 99999999999998 88999887665 999999999998 4789999999999998665
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5e-16 Score=119.09 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=71.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-ccccccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAGDIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
|++|++++|.+++. | .++.+ ++|++|++++ ++++..++.+++|++|++++|.+++. + +..+.+|++|++++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKL---TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGC---TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhccc---CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 46777777777663 4 56667 7777777777 77762266677777777777776543 2 55556666666666
Q ss_pred CcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCcc-c------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQY-V------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l-~------~~~L~~L~Ls~N~l~g 133 (138)
|++++ +| ++.+++ +++++ +.+++|++|++++|+. . .++|++|++++|++++
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 66663 33 445554 55555 3344555555555521 1 2444444554444444
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=2e-16 Score=121.02 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS- 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls- 100 (138)
++|++|++++ .+++ ..+..+++|++|++++|.+++..+ +..+.+|++|++++|++++. +. +..+++ +|+++
T Consensus 243 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcC
Confidence 4555555555 4444 335555555555555555543222 44445566666666665532 22 444444 55555
Q ss_pred ---------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 101 ---------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 101 ---------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
..+++|++|++++|+++ .++|+.|++++|++++..|
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 34566677777777666 4667777777777776443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.2e-17 Score=126.58 Aligned_cols=124 Identities=15% Similarity=0.041 Sum_probs=71.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L 75 (138)
|++|++++|.+++..+ ..+ ++|++|++++ .+++ ..|+.+++|++|++++|.+++..|..+. .+.+|++|
T Consensus 101 L~~L~L~~N~l~~~~~---~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 101 IETLHAANNNISRVSC---SRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CCEEECCSSCCCCEEE---CCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred cCEEECcCCcCCCCCc---ccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 3455555555544322 234 5566666666 6665 3455666666666666666655555544 34566666
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
++++|.+++. |... .++. +|+++ ..+++|+.|++++|+|+ .++|+.|++++|++.
T Consensus 175 ~Ls~N~l~~~-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 175 NLQYNFIYDV-KGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCCCEE-ECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCCccccc-cccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6666666533 2221 2333 44444 23456888888888877 357788888888876
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=2.8e-16 Score=115.61 Aligned_cols=123 Identities=12% Similarity=0.113 Sum_probs=66.7
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
++|++++|.+++. +. +..+ ++|+++++++ .+++ ..+..+++|++|++++|.++...+ +..+.+|++|++++
T Consensus 180 ~~L~l~~n~l~~~-~~-~~~l---~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 180 YSLSLNYNQIEDI-SP-LASL---TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp SEEECTTSCCCCC-GG-GGGC---TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEEccCCccccc-cc-ccCC---CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 4455555555432 22 4444 4555555555 4444 335555566666666665543222 44455566666666
Q ss_pred CcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
|.+++ + +.+..+++ +++++ ..+++|++|++++|+++ .++|++|++++|++++
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 66652 2 23444444 55555 34556666777776665 3567777777777666
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=8.6e-16 Score=117.76 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=73.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-ccccccccCCCCCCEEEcccCccceeCCC---------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAGDIITNLSRLAHMDLSFDLRTFNFSS--------------- 64 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~~~~~~l~~L~~L~ls~N~l~~~~~~--------------- 64 (138)
|++|++++|++++. | ++.+ ++|++|++++ ++++-.++.+++|++|++++|++++. +-
T Consensus 87 L~~L~Ls~N~l~~~-~--~~~l---~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 87 LTYLACDSNKLTNL-D--VTPL---TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSEEECCSSCCSCC-C--CTTC---TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCS
T ss_pred CCEEECcCCCCcee-e--cCCC---CcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCC
Confidence 46777777777663 3 6666 7777777777 66662266666666666666666542 10
Q ss_pred -----CCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc------CCCCc
Q 046299 65 -----GWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV------SQSWT 122 (138)
Q Consensus 65 -----~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~------~~~L~ 122 (138)
.+..+.+|++|++++|++++ +| +..++. .++++ +.+++|++|++++|+++ .++|+
T Consensus 160 ~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~ 236 (457)
T 3bz5_A 160 KITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCS
T ss_pred cccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCC
Confidence 13334455566666666653 33 444444 55554 34566667777777666 35667
Q ss_pred EEEccCCeeee
Q 046299 123 IIDLGINKFSG 133 (138)
Q Consensus 123 ~L~Ls~N~l~g 133 (138)
.|++++|++++
T Consensus 237 ~L~l~~N~l~~ 247 (457)
T 3bz5_A 237 YFDCSVNPLTE 247 (457)
T ss_dssp EEECCSSCCSC
T ss_pred EEEeeCCcCCC
Confidence 77777777766
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=1.1e-15 Score=117.03 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++ +| +++.+ ++|++|++++ ++++ +.. .++|++|++++|++++ +| .+..+.+|++|+++
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l---~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNS---SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTC---TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCEEECcCCCCCC-Cc-ccCCC---CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 4566666666655 45 36666 6666666666 5554 111 1244444444444433 22 23344444444444
Q ss_pred CCcCC
Q 046299 79 SCKMG 83 (138)
Q Consensus 79 ~n~l~ 83 (138)
+|+++
T Consensus 204 ~N~l~ 208 (454)
T 1jl5_A 204 NNSLK 208 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 44443
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=7.7e-17 Score=118.58 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=93.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++..+ +..+ ++|++|++++ ++++ ..+..+++|++|++++|.++.. +.+..+.+|++|+++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANM---TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred cceeecccCCCCCCch--hhcC---CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEcc
Confidence 5678888888876433 6777 8888888888 8887 5588888888888888887643 346666788888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFS 132 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~ 132 (138)
+|++++ + +.+..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|+|+
T Consensus 274 ~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 888874 3 34556666 77777 56788999999999998 478999999999986
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.9e-16 Score=124.42 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|++ +|. ++.+ ++|+.|++++ +++. ..|+.+++|+.|++++|++++ +| .+..+.+|++|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQL---LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGG---TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCC-CcC-cccc---ccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5789999999987 666 8888 9999999999 8888 788999999999999999986 56 7888889999999
Q ss_pred cCCcCCCCC-CCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEc
Q 046299 78 GSCKMGPGF-PNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDL 126 (138)
Q Consensus 78 ~~n~l~~~~-p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~L 126 (138)
++|++++.. |..++.+++ |+.|++++|+++ .++|+.||+
T Consensus 516 s~N~l~~~~~p~~l~~l~~----------L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPR----------LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTT----------CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCC----------CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998665 888877665 899999999887 356776654
No 108
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=7.8e-16 Score=103.56 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=85.5
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|.++. +|..+ . ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--P---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccC--C---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 679999999976 67655 3 7899999999 9998 66999999999999999998777767788899999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|+|++..|..+..+++ |++|++++|.++
T Consensus 86 ~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKS----------LTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCC----------CCEEEeCCCCCC
Confidence 999999655556777665 999999999886
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=8.4e-17 Score=115.21 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=102.9
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
.+++++|.+++. + .+..+ ++|++|++++ .++. +.+..+++|++|++++|++++..+ +..+.+|++|++++|
T Consensus 23 ~l~l~~~~i~~~-~-~~~~l---~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 23 KQNLGKQSVTDL-V-SQKEL---SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTCSCTTSE-E-CHHHH---TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHhcCCCcccc-c-chhhc---CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 456788888764 3 57888 9999999999 9999 889999999999999999986544 778889999999999
Q ss_pred cCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 81 KMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 81 ~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+++ .+|.... .+ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 96 ~l~-~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 96 RLK-NLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCS-CCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred ccC-CcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence 998 4665433 44 88888 56789999999999998 5889999999999987
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=3.6e-15 Score=114.24 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=61.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS- 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls- 100 (138)
++|++|++++ ++++ +.|+++++|++|++++|++++ +|... .+|++|++++|++++ +| .++.+++ +++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 4677777777 7776 567777777777777777764 44332 367788888887774 56 4666666 66665
Q ss_pred -------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 101 -------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 101 -------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
...++|++|++++|+++ .++|++|++++|++++
T Consensus 205 N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 205 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 11234555555555544 2344444444444443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=8e-16 Score=121.70 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=108.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|++++|.+.. +| .+..+ ++|+.|+|++ ++++ ..+..+++|+.|++++|.+++ + +.+..+.+|++|+++
T Consensus 45 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 45 IDQIIANNSDIKS-VQ-GIQYL---PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLE 117 (605)
T ss_dssp CCCCBCTTCCCCC-CT-TGGGC---TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECT
T ss_pred CCEEECcCCCCCC-Ch-HHccC---CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEec
Confidence 5789999999976 44 58889 9999999999 9999 669999999999999999974 3 367888899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++ + +.+..+++ .|+++ ..+++|+.|+|++|+|+ +++|+.|+|++|+|++ +|
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l~ 191 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR 191 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-Ch
Confidence 999984 4 34777777 88888 67789999999999998 5789999999999987 44
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=3.6e-15 Score=117.30 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=40.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
++.|++++|.+++ +|..+ . ++|++|++++ +++. + ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--P---PQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--C---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred ccEEEeCCCCCCc-cCHhH--c---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 3566666666655 44433 2 4566666666 5555 3 345555666666665554 443 322 55555555
Q ss_pred CCcCCCCCCC
Q 046299 79 SCKMGPGFPN 88 (138)
Q Consensus 79 ~n~l~~~~p~ 88 (138)
+|++++ +|.
T Consensus 129 ~N~l~~-lp~ 137 (571)
T 3cvr_A 129 NNQLTM-LPE 137 (571)
T ss_dssp SSCCSC-CCC
T ss_pred CCcCCC-CCC
Confidence 555553 444
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=3.5e-15 Score=100.77 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=83.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|+++ .+|..+ . ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--P---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC-ccCCCc--C---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 47899999995 477655 3 7799999999 9998 67999999999999999998766666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|+|++..+..+..+++ |++|++++|.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~----------L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKS----------LTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccC----------CCEEEeCCCCcc
Confidence 999999544445776655 999999999987
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1.6e-15 Score=119.26 Aligned_cols=119 Identities=15% Similarity=0.085 Sum_probs=80.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|+|++ +|. +. .+|++|++++ ++++ +. .+++|++|++++|.+++ +|. .+.+|++|+++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~-----~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LP-----ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVR 168 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CC-----TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCEEEccCCCCCC-cch-hh-----cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECC
Confidence 4667777777766 554 32 2677777777 7776 33 56777777777777764 444 34567777777
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----cCC----Cce-------eEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----SFQ----QYV-------FRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----~~l----~~L-------~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ +|. +. ++ +|+++ ..+ .+| +.|++++|+|+ .++|+.|+|++|++++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 777764 666 44 33 66666 111 146 99999999998 4689999999999988
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
.+|
T Consensus 245 ~~p 247 (571)
T 3cvr_A 245 RIR 247 (571)
T ss_dssp HHH
T ss_pred cCH
Confidence 665
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.3e-15 Score=104.42 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=82.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.++. ++.+..+ ++|++|++++ ++++ ..|+.+++|++|++++|.++...+..+..+.+|++|+
T Consensus 68 L~~L~l~~n~~~~--~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 68 IKDLTINNIHATN--YNPISGL---SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CSEEEEESCCCSC--CGGGTTC---TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCEEEccCCCCCc--chhhhcC---CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 5778888886643 3467777 8888888888 8775 6777888888888888888766666677777888888
Q ss_pred ecCCc-CCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc
Q 046299 77 LGSCK-MGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~-l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~ 117 (138)
+++|. ++ .+| .+..+++ +|+++ ..+++|++|++++|+|.
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 88887 54 555 5666666 77777 56788999999999874
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=9.5e-17 Score=119.33 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=48.9
Q ss_pred CcEEEccCccccCcCC----ccccCCCCCC-CccEEEccc-cccc---ccccCC-----CCCCEEEcccCccceeCCCCC
Q 046299 1 MKDLFVGNNRLNGTLT----KASDSFPSFS-FWTSLIILR-KLAG---DIITNL-----SRLAHMDLSFDLRTFNFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p----~~~~~l~~~~-~L~~L~Ls~-~l~~---~~~~~l-----~~L~~L~ls~N~l~~~~~~~~ 66 (138)
|++|++++|.+++..+ ..+..+ + +|++|++++ .+++ ..+..+ ++|++|++++|.++...+..+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANT---PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTC---CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhC---CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4677777777766554 556666 6 677777777 6665 333332 667777777777654433322
Q ss_pred cc----c-cCcceEEecCCcCCCC
Q 046299 67 IP----P-FQLNTIILGSCKMGPG 85 (138)
Q Consensus 67 ~~----~-~~L~~L~l~~n~l~~~ 85 (138)
.. . .+|++|++++|++++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHHHhCCCCccEEECcCCcCCcH
Confidence 22 1 4566666666666543
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.5e-18 Score=119.26 Aligned_cols=119 Identities=9% Similarity=0.080 Sum_probs=96.4
Q ss_pred cEEEccCccccCcCCc------cccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcc
Q 046299 2 KDLFVGNNRLNGTLTK------ASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLN 73 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~------~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~ 73 (138)
+.++++.+.++|.+|. .++.+ ++|++|++++ .+++ +.+..+++|++|++++|.++ .+|..+..+.+|+
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l---~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTL---KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHT---TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred cCcchheeEeccccCcHhhhhHHHhcC---CCCCEEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 4567888888888776 88889 9999999999 9998 88889999999999999997 5676666667899
Q ss_pred eEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 74 TIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++|++++ +| .+..+ ++|++|++++|+++ .++|++|++++|++++.+|
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l----------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKL----------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHH----------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECcCCcCCc-CC-ccccC----------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 99999999984 55 44443 44888888888887 4678888888888876544
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.7e-15 Score=99.28 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=84.8
Q ss_pred CCccEEEccc-ccc--c--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLA--G--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~--~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++++.|++++ .++ . ..+..+++|++|++++|.+++. ..+..+.+|++|++++|++++.+|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----- 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN----- 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT-----
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC-----
Confidence 7899999999 998 3 6778999999999999999765 67788889999999999999767776655554
Q ss_pred cCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeec
Q 046299 101 SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~ 134 (138)
|++|++++|+++ .++|++|++++|++++.
T Consensus 90 -----L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 90 -----LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp -----CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred -----CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 999999999998 47899999999999983
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=2.7e-16 Score=116.92 Aligned_cols=129 Identities=10% Similarity=0.030 Sum_probs=101.3
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-------ccccCCC-CCCEEEcccCccceeCCCCCccc----
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLS-RLAHMDLSFDLRTFNFSSGWIPP---- 69 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~---- 69 (138)
.+++++|.++|.+|..+... ++|++|++++ .+++ ..|..++ +|++|++++|.++...+..+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP---HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC---TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCC---CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 57899999999888877777 7899999999 9987 4577888 99999999999986666555554
Q ss_pred -cCcceEEecCCcCCCCCCCC----CCCC-CC--eEEec----------------cC-CCceeEEEeeCCccc-------
Q 046299 70 -FQLNTIILGSCKMGPGFPNP----IPEM-PH--DVLIS----------------SF-QQYVFRVDIYFQQYV------- 117 (138)
Q Consensus 70 -~~L~~L~l~~n~l~~~~p~~----~~~l-~~--~L~ls----------------~~-l~~L~~L~ls~N~l~------- 117 (138)
.+|++|++++|++++..+.. +... ++ +|+++ .. .++|++|++++|+++
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 78999999999998665553 3333 44 78887 12 358888888888887
Q ss_pred -------CCCCcEEEccCCeeeec
Q 046299 118 -------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~ 134 (138)
+.+|++|+|++|++++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHHhcCCccccEeeecCCCCchh
Confidence 14788888888888753
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4e-15 Score=99.37 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=84.9
Q ss_pred CCccEEEccc-ccc--c--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLA--G--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~--~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++|++|++++ .++ . ..+..+++|++|++++|.++.. ..+..+.+|++|++++|++++.+|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----- 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN----- 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC-----
Confidence 7899999999 998 3 5678999999999999999765 67788889999999999999767776655554
Q ss_pred cCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 101 SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
|++|++++|+++ .++|+.|++++|++++ +|
T Consensus 97 -----L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~ 136 (168)
T 2ell_A 97 -----LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LN 136 (168)
T ss_dssp -----CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-ST
T ss_pred -----CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hH
Confidence 999999999998 3689999999999987 44
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=3.7e-16 Score=116.84 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=19.3
Q ss_pred CcEEEccCccccC----cCCccccCCCCCCCccEEEccc-ccc
Q 046299 1 MKDLFVGNNRLNG----TLTKASDSFPSFSFWTSLIILR-KLA 38 (138)
Q Consensus 1 L~~L~Ls~N~l~~----~~p~~~~~l~~~~~L~~L~Ls~-~l~ 38 (138)
|++|+|++|.+++ .+|..+..+ ++|++|+|++ .++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKH---TPLEHLYLHNNGLG 135 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHC---TTCCEEECCSSCCH
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhC---CCCCEEECcCCCCC
Confidence 4556666666654 244455555 5555555555 554
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=6.3e-16 Score=113.13 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=77.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.|++++|.+++..+. +..+ ++|++|++++ .+++ ..+..+++|++|++++|.++...+..+..+.+|++|
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~---~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSP---FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCC---BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ceEEEcCCccccccchh-hccC---CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 35667777777665443 4456 7777777777 6654 456667777777777776665555555556667777
Q ss_pred EecCC-cCCCC-CCCCCCCCCC--eEEec--------------cCCC-ceeEEEeeCCc--cc----------CCCCcEE
Q 046299 76 ILGSC-KMGPG-FPNPIPEMPH--DVLIS--------------SFQQ-YVFRVDIYFQQ--YV----------SQSWTII 124 (138)
Q Consensus 76 ~l~~n-~l~~~-~p~~~~~l~~--~L~ls--------------~~l~-~L~~L~ls~N~--l~----------~~~L~~L 124 (138)
++++| .+++. +|..+..+++ +|+++ ..++ +|++|++++|+ ++ .++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 77776 45532 4444444444 55554 2344 67777777763 32 3566666
Q ss_pred EccCCe-eee
Q 046299 125 DLGINK-FSG 133 (138)
Q Consensus 125 ~Ls~N~-l~g 133 (138)
++++|. +++
T Consensus 228 ~l~~~~~l~~ 237 (336)
T 2ast_B 228 DLSDSVMLKN 237 (336)
T ss_dssp ECTTCTTCCG
T ss_pred eCCCCCcCCH
Confidence 666666 443
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=9.4e-14 Score=110.22 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=15.1
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccc
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~ 59 (138)
++|++|++++ ++++ +. .+++|++|++++|.++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 4555555555 5444 22 3444444444444443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.3e-14 Score=97.73 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=86.4
Q ss_pred ccccCCCCCCCccEEEccc-cccc-ccccCCC-CCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCC-CCC
Q 046299 17 KASDSFPSFSFWTSLIILR-KLAG-DIITNLS-RLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNP-IPE 92 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~ 92 (138)
..+.++ .+|++|++++ +++. +.+..+. +|++|++++|.+++. ..+..+.+|++|++++|++++ +|+. +..
T Consensus 13 ~~~~~~---~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNA---VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQA 86 (176)
T ss_dssp CEEECT---TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHH
T ss_pred HhcCCc---CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhc
Confidence 346677 9999999999 9998 6666666 999999999999865 577888899999999999984 5544 355
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCCC
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++ |++|++++|+|+ .++|+.|++++|+++. +|.
T Consensus 87 l~~----------L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~ 130 (176)
T 1a9n_A 87 LPD----------LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKH 130 (176)
T ss_dssp CTT----------CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred CCC----------CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence 544 999999999997 3689999999999985 553
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=1.2e-13 Score=109.54 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=26.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l 58 (138)
|++|++++|+|++ +|. .+ ++|++|++++ ++++ .. .+++|+.|++++|++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l---~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LP---PGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQL 133 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CC---TTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCC
T ss_pred CCEEEcCCCcCCc-CCC---CC---CCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCC
Confidence 4667777777754 443 44 6666666666 6655 22 333444444444443
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=7.8e-16 Score=115.04 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=76.7
Q ss_pred CcEEEccCcccc-CcCC---ccccCCCCCCCccEEEccc-cccc-------c-cccCCCCCCEEEcccCccc----eeCC
Q 046299 1 MKDLFVGNNRLN-GTLT---KASDSFPSFSFWTSLIILR-KLAG-------D-IITNLSRLAHMDLSFDLRT----FNFS 63 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p---~~~~~l~~~~~L~~L~Ls~-~l~~-------~-~~~~l~~L~~L~ls~N~l~----~~~~ 63 (138)
|++|++++|+++ +.+| ..+..+ ++|++|++++ +++. . .+..+++|++|++++|.++ ..+|
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHC---TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhC---CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 455666666664 2233 244455 6666666666 6652 2 5556666666666666664 3444
Q ss_pred CCCccccCcceEEecCCcCCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------------CCCCcEEE
Q 046299 64 SGWIPPFQLNTIILGSCKMGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------------SQSWTIID 125 (138)
Q Consensus 64 ~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------------~~~L~~L~ 125 (138)
..+..+.+|++|++++|.+++. +|..+.. +.+++|++|++++|+++ .++|++|+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT--------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhh--------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 4555555666666666666533 2333311 11456999999999998 38899999
Q ss_pred ccCCeeeecC
Q 046299 126 LGINKFSGQY 135 (138)
Q Consensus 126 Ls~N~l~g~i 135 (138)
+++|++++..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 9999998754
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=3.2e-14 Score=95.59 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=75.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..|..|..+ ++|++|+|++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRL---TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCcCCccChhhhcCc---ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 5789999999999889999999 9999999999 9999 5689999999999999999877776788899999999
Q ss_pred ecCCcCCCC
Q 046299 77 LGSCKMGPG 85 (138)
Q Consensus 77 l~~n~l~~~ 85 (138)
+++|.++..
T Consensus 109 L~~N~~~c~ 117 (170)
T 3g39_A 109 LLNNPWDCA 117 (170)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCCCCC
Confidence 999999843
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=5.7e-14 Score=103.46 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=84.8
Q ss_pred EEEccCc-cccCcCCccccCCCCCCCccEEEcc-c-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 3 DLFVGNN-RLNGTLTKASDSFPSFSFWTSLIIL-R-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 3 ~L~Ls~N-~l~~~~p~~~~~l~~~~~L~~L~Ls-~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
.++.+++ ++++ +|. +..+ ++|++|+|+ . ++++ ..|.++++|++|+|++|+|++..|..|..+.+|++|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~---~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSC---SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc-cCC-CCCC---CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 4688888 8976 777 9999 999999998 5 8888 6799999999999999999999998999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
|++|+|+ .+|..+.... .|+.|++++|.+.
T Consensus 87 l~~N~l~-~~~~~~~~~~----------~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALE-SLSWKTVQGL----------SLQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCS-CCCSTTTCSC----------CCCEEECCSSCCC
T ss_pred CCCCccc-eeCHHHcccC----------CceEEEeeCCCcc
Confidence 9999998 4555443322 2899999999987
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=5.1e-16 Score=113.63 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=90.1
Q ss_pred CcEEEccCccccCc-CCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccC-ccce-eCCCCCccccCcc
Q 046299 1 MKDLFVGNNRLNGT-LTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFD-LRTF-NFSSGWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~-~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N-~l~~-~~~~~~~~~~~L~ 73 (138)
|++|++++|.+++. +|..+..+ ++|++|++++ .+++ ..++.+++|++|++++| .+++ .++..+..+.+|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCEEEccCCCcCHHHHHHHHhhC---CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 57888888888765 67777788 8888888888 8776 66777888888888888 5654 2444455666788
Q ss_pred eEEecCC-cCCCC-CCCCCCCCC-C--eEEec---------------cCCCceeEEEeeCCc-cc---------CCCCcE
Q 046299 74 TIILGSC-KMGPG-FPNPIPEMP-H--DVLIS---------------SFQQYVFRVDIYFQQ-YV---------SQSWTI 123 (138)
Q Consensus 74 ~L~l~~n-~l~~~-~p~~~~~l~-~--~L~ls---------------~~l~~L~~L~ls~N~-l~---------~~~L~~ 123 (138)
+|++++| .+++. ++..+..++ + +|+++ ..+++|++|++++|. ++ .++|+.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 8888888 77643 455555555 4 66665 345678888888887 44 367777
Q ss_pred EEccCCe
Q 046299 124 IDLGINK 130 (138)
Q Consensus 124 L~Ls~N~ 130 (138)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 7777774
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=5.2e-14 Score=95.00 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=75.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..|..|+.+ ++|++|+|++ ++++ ..|.++++|++|++++|++++..+..+..+.+|++|+
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHL---VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CcEEEeCCCCccccCHHHhcCC---cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 6899999999999889999999 9999999999 9999 5589999999999999999866666688889999999
Q ss_pred ecCCcCCCCCCC
Q 046299 77 LGSCKMGPGFPN 88 (138)
Q Consensus 77 l~~n~l~~~~p~ 88 (138)
+++|.+. ..|.
T Consensus 112 L~~N~~~-c~~~ 122 (174)
T 2r9u_A 112 LYNNPWD-CECR 122 (174)
T ss_dssp CCSSCBC-TTBG
T ss_pred eCCCCcc-cccc
Confidence 9999998 4444
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=7.4e-14 Score=109.72 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=77.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeC-CCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNF-SSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|+ .+|..++.+ ++|++|+|++ ++++ +.|+.+++|++|++++|++++.. |..+..+.+|++|++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l---~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAAL---RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGC---TTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CcEeecCccccc-ccchhhhcC---CCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 689999999998 689999999 9999999999 9999 88999999999999999998776 889999999999999
Q ss_pred cCCcCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPI 90 (138)
Q Consensus 78 ~~n~l~~~~p~~~ 90 (138)
++|.+++. |+..
T Consensus 541 ~~N~l~~~-~~~~ 552 (567)
T 1dce_A 541 QGNSLCQE-EGIQ 552 (567)
T ss_dssp TTSGGGGS-SSCT
T ss_pred cCCcCCCC-ccHH
Confidence 99999854 4443
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=5.5e-13 Score=98.65 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=90.0
Q ss_pred CcEEEccCccccCcCC-ccccCCCCCCCccE-EEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCC--------
Q 046299 1 MKDLFVGNNRLNGTLT-KASDSFPSFSFWTS-LIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGW-------- 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~-L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~-------- 66 (138)
|++|+|++|++.+.+| ..|.++ ++++. ++++. +++. ..|..+++|++|++++|+++...+..+
T Consensus 56 L~~L~Ls~N~i~~~i~~~~f~~L---~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 56 LEKIEISQNDVLEVIEADVFSNL---PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CCEEEEECCTTCCEECTTSBCSC---TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCEEECcCCCCCCccChhHhhcc---hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 6889999999876555 467778 77765 44555 7777 678888888888888888764333222
Q ss_pred -----------------ccc-cCcceEEecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeC
Q 046299 67 -----------------IPP-FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYF 113 (138)
Q Consensus 67 -----------------~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~ 113 (138)
... ..+++|++++|+|+ .+|.......+ .++++ ..+++|++||+++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 222 24677888888887 55555444444 66665 4567999999999
Q ss_pred Cccc------CCCCcEEEccCCeeeecCC
Q 046299 114 QQYV------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 114 N~l~------~~~L~~L~Ls~N~l~g~iP 136 (138)
|+|+ ..+|+.|.+.++.--..+|
T Consensus 212 N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 212 TRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred CCcCccChhhhccchHhhhccCCCcCcCC
Confidence 9999 4567788765544333355
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=5.3e-15 Score=112.30 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=20.1
Q ss_pred CCceeEEEeeCCccc-------------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV-------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l~g 133 (138)
.++|++|++++|+++ .++|++|++++|++++
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 456677777777665 2567777777776654
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=8.2e-15 Score=111.24 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=23.7
Q ss_pred cEEEccCccccCcCCcc-ccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcc
Q 046299 2 KDLFVGNNRLNGTLTKA-SDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~-~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l 58 (138)
++||+++|+++...... +..+ ++|++|++++ .+++ ..+..+++|++|++++|.+
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHH---TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred eehhhhhcccCchhHHHHHhhc---CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 34555555543322111 3344 4455555554 4442 2233444455555555544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.7e-15 Score=102.20 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=92.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.+++ +| .+..+ ++|++|++++ .++. ..+..+++|++|++++|++++ +| .+..+.+|++|++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l---~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGM---ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHH---TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCEEECCCCCCcc-cc-ccccC---CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 6899999999987 67 88899 9999999999 9988 556677999999999999975 44 5677789999999
Q ss_pred cCCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc-------------------CCCCcEEEccCCeeee
Q 046299 78 GSCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV-------------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 78 ~~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-------------------~~~L~~L~Ls~N~l~g 133 (138)
++|++++ +|. .+..++ +|++|++++|+++ .++|+.|| +|.++.
T Consensus 123 ~~N~i~~-~~~~~~l~~l~----------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITN-WGEIDKLAALD----------KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCC-HHHHHHHTTTT----------TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCc-hhHHHHHhcCC----------CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999983 333 455554 4999999999983 46788886 666543
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.7e-12 Score=94.45 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred CcEEEccC-ccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGN-NRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|+|++ |+|++..|..|+.+ ++|++|+|++ +|++ ..|.++++|++|+|++|+|++..+..+..+ .|++|
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~L~~l 108 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGL---GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL 108 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSC---CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred eeEEEccCCCCCCCcChhHhccc---cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-CceEE
Confidence 68999996 99999888899999 9999999999 9999 678999999999999999986555555444 59999
Q ss_pred EecCCcCC
Q 046299 76 ILGSCKMG 83 (138)
Q Consensus 76 ~l~~n~l~ 83 (138)
++.+|.+.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 99999987
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.7e-14 Score=106.23 Aligned_cols=133 Identities=9% Similarity=0.119 Sum_probs=81.9
Q ss_pred CcEEEccCccccCcCCccccCC--CCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCC-----cc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF--PSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGW-----IP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l--~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~-----~~ 68 (138)
|++|++++|.++......+... ..+++|+.|+|++ .++. .....+++|++|++++|.++......+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 4677888887765322222211 0115777888877 7765 222345567777777777753221111 12
Q ss_pred ccCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc---------
Q 046299 69 PFQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV--------- 117 (138)
Q Consensus 69 ~~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~--------- 117 (138)
..+|++|++++|.++.. ++..+...+. +||++ ...++|++|++++|+|+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34677777777777531 2223333444 67766 34567999999999998
Q ss_pred ----CCCCcEEEccCCeeee
Q 046299 118 ----SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ----~~~L~~L~Ls~N~l~g 133 (138)
.++|++|||++|.|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 3789999999999864
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=3.1e-11 Score=88.47 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=95.4
Q ss_pred CcEEEccCcccc--------------------CcCCccccC--------CCCCCCccEEEccccccc---ccccCCCCCC
Q 046299 1 MKDLFVGNNRLN--------------------GTLTKASDS--------FPSFSFWTSLIILRKLAG---DIITNLSRLA 49 (138)
Q Consensus 1 L~~L~Ls~N~l~--------------------~~~p~~~~~--------l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~ 49 (138)
|++|||++|++. .+.+.+|.+ + ++|+.+++++.++. .+|.++++|+
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~---~~L~~l~L~~~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK---QTLEKVILSEKIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC---TTCCC-CBCTTCCEECTTTTTTCTTCC
T ss_pred CeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc---CCCcEEECCccccchhHHHhhcCcccc
Confidence 688999999997 223345666 7 99999999874444 8899999999
Q ss_pred EEEcccCccceeCCCCCc--------------------------------------------------------------
Q 046299 50 HMDLSFDLRTFNFSSGWI-------------------------------------------------------------- 67 (138)
Q Consensus 50 ~L~ls~N~l~~~~~~~~~-------------------------------------------------------------- 67 (138)
.+++++|.++...+..|.
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999975321111110
Q ss_pred ----------------cccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCcee-EEEeeCCccc
Q 046299 68 ----------------PPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVF-RVDIYFQQYV 117 (138)
Q Consensus 68 ----------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~-~L~ls~N~l~ 117 (138)
.+.+|+++++++|+++..-+..|..+.+ .++++ .++++|+ .+++.+ +++
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce
Confidence 1457899999999998444445777877 78876 5678898 999988 555
Q ss_pred ---------CCCCcEEEccCCeeeecCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP 136 (138)
..+|+.++++.|.++. |+
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~-I~ 313 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITT-LG 313 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCE-EC
T ss_pred EEchhhhhCCccCCEEEeCCCccCc-cc
Confidence 4789999999998876 44
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.10 E-value=5.2e-11 Score=92.85 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=48.5
Q ss_pred CcEEEccCccccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCCCCcc
Q 046299 1 MKDLFVGNNRLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSGWIP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 68 (138)
|++|++++|.+++. ++..+..+ ++|++|++++ .+++ ..+.++++|++|++++|.+.+ ++..+..
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHN---TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHC---CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCEEECccccccCcchhHHHHHHhcC---CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 56778888877654 23334556 7788888877 7762 345567788888888877654 3344445
Q ss_pred ccCcceEEecC
Q 046299 69 PFQLNTIILGS 79 (138)
Q Consensus 69 ~~~L~~L~l~~ 79 (138)
+.+|++|+++.
T Consensus 242 ~~~L~~L~l~~ 252 (592)
T 3ogk_B 242 AANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEEECB
T ss_pred hhHHHhhcccc
Confidence 55666666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.02 E-value=1.2e-11 Score=92.66 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=71.9
Q ss_pred CcEEEccCccccCcCCccc-cCCCCCCCccEEEccc-cccc---ccc-----cCCCCCCEEEcccCccce----eCCCCC
Q 046299 1 MKDLFVGNNRLNGTLTKAS-DSFPSFSFWTSLIILR-KLAG---DII-----TNLSRLAHMDLSFDLRTF----NFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~-~~l~~~~~L~~L~Ls~-~l~~---~~~-----~~l~~L~~L~ls~N~l~~----~~~~~~ 66 (138)
|++|+|++|.++......+ ..+ ++|+.|+|++ .++. ..+ ...++|++|++++|.++. .++..+
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3567777777754322222 234 5677777777 6665 222 245667777777777642 122222
Q ss_pred ccccCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc-------
Q 046299 67 IPPFQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV------- 117 (138)
Q Consensus 67 ~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~------- 117 (138)
....+|++|++++|.+++. ++..+...+. +|+++ ...++|++|++++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3445677777777776531 2233333333 66666 23477999999999998
Q ss_pred -----CC--CCcEEE--ccCCeee
Q 046299 118 -----SQ--SWTIID--LGINKFS 132 (138)
Q Consensus 118 -----~~--~L~~L~--Ls~N~l~ 132 (138)
.. .++.+. +..|.++
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHCC------CEEECCCC----CH
T ss_pred HHHhcCCCccchhhHhhhcCCccC
Confidence 12 277776 6666654
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.93 E-value=9.9e-10 Score=85.61 Aligned_cols=130 Identities=8% Similarity=0.004 Sum_probs=84.2
Q ss_pred CcEEEccCccccC----cCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcc-------------------
Q 046299 1 MKDLFVGNNRLNG----TLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLS------------------- 54 (138)
Q Consensus 1 L~~L~Ls~N~l~~----~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls------------------- 54 (138)
|++|++++|.+++ .++..+..+ ++|++|++++ .+.+ ..+..+++|++|+++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHC---TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhC---CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 5677777777762 233444566 7777777777 6655 445555555655555
Q ss_pred --------cCccceeCCCCCccccCcceEEecCCcCCCCCC-CCCCCCCC--eEEec------------cCCCceeEEEe
Q 046299 55 --------FDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP-NPIPEMPH--DVLIS------------SFQQYVFRVDI 111 (138)
Q Consensus 55 --------~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~--~L~ls------------~~l~~L~~L~l 111 (138)
++.. ..+|..+..+.+|++|++++|.+++... ..+..+++ +|+++ ..+++|++|++
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 3211 2334444556689999999998764433 22455555 66664 45788999999
Q ss_pred e-----------CCccc----------CCCCcEEEccCCeeeec
Q 046299 112 Y-----------FQQYV----------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 112 s-----------~N~l~----------~~~L~~L~Ls~N~l~g~ 134 (138)
+ .|.++ .++|++|+++.|.+++.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 9 46777 47899999988888753
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=8e-09 Score=75.56 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=44.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCC-EEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLA-HMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.+++++|+++.+.+.+|.++ .+|+.++++++++. .+|.++++|+ .+++.+ .++...+.+|..+.+|+.++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~---~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQK---KYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTC---TTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CeEEECCCCCcceecHhhhhCC---CCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 3455555555554444455555 55555555442222 4555555555 555555 44434444555555555555
Q ss_pred ecCCcCCCCCCCCCCCC
Q 046299 77 LGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l 93 (138)
+++|+++..-+..|.++
T Consensus 304 l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNG 320 (329)
T ss_dssp ECSSCCCEECTTTTCTT
T ss_pred eCCCccCccchhhhcCC
Confidence 55555552223334443
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=1.4e-09 Score=73.79 Aligned_cols=97 Identities=4% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCcccee----CCCCCccccCcceEEecCCcCCCC----CCC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFN----FSSGWIPPFQLNTIILGSCKMGPG----FPN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~ 88 (138)
+.|++|+|++ .+.. ..+...+.|++|++++|.+... +...+....+|++|++++|.|+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 7888898887 4544 4566778899999999988521 222333445789999999988742 233
Q ss_pred CCCCCCCeEEeccCCCceeEEEe--eCCccc-------------CCCCcEEEccCCeee
Q 046299 89 PIPEMPHDVLISSFQQYVFRVDI--YFQQYV-------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L~l--s~N~l~-------------~~~L~~L~Ls~N~l~ 132 (138)
.+... +.|++|++ ++|.|+ .++|++|+|++|.+.
T Consensus 116 ~L~~n----------~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSN----------TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGC----------SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhC----------CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33333 34899999 889888 378999999999874
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=3.7e-10 Score=76.70 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=77.4
Q ss_pred CcEEEccCc-cccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGNN-RLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~N-~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|+|++| .+... +...+... ++|++|+|++ .+.. ..+...+.|++|++++|.|+.. +.
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~---~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTN---TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTC---CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhC---CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999 88542 34455667 8999999999 9986 4456678999999999999632 33
Q ss_pred CCCccccCcceEEe--cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 64 SGWIPPFQLNTIIL--GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 64 ~~~~~~~~L~~L~l--~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..+....+|++|++ ++|.++..-...+...- ...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L------~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANML------EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH------HHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH------HhCCCcCEEeccCCCCC
Confidence 44555668999999 88999743211111100 12345999999999885
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.76 E-value=1.7e-10 Score=89.88 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=56.9
Q ss_pred CCccEEEccc-cccc---cccc-CCCCCCEEEcc--c----Ccccee-----CCCCCccccCcceEEecCCcCCCCCCCC
Q 046299 26 SFWTSLIILR-KLAG---DIIT-NLSRLAHMDLS--F----DLRTFN-----FSSGWIPPFQLNTIILGSCKMGPGFPNP 89 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~-~l~~L~~L~ls--~----N~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 89 (138)
++|+.|+++. .+++ ..+. .+++|+.|+++ + |.++.. ++..+..+.+|++|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 6666666665 6655 2332 46666777666 2 333311 000122334566666644 444322222
Q ss_pred CCC-CCC--eEEec-------------cCCCceeEEEeeCCccc----------CCCCcEEEccCCeee
Q 046299 90 IPE-MPH--DVLIS-------------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFS 132 (138)
Q Consensus 90 ~~~-l~~--~L~ls-------------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~ 132 (138)
+.. +++ +|+++ ..+++|++|++++|.++ .++|+.|++++|+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 222 222 44444 23567888888888876 367888888888764
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=1.7e-08 Score=72.46 Aligned_cols=79 Identities=20% Similarity=0.131 Sum_probs=54.2
Q ss_pred EEccCccc---cCcCCccccCCCCCCCccEEEccc-cccc-c----cccCCCCCCEEEcccCccceeCCCCCcccc--Cc
Q 046299 4 LFVGNNRL---NGTLTKASDSFPSFSFWTSLIILR-KLAG-D----IITNLSRLAHMDLSFDLRTFNFSSGWIPPF--QL 72 (138)
Q Consensus 4 L~Ls~N~l---~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~----~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~--~L 72 (138)
++++.|+. .+.++....++ ++|+.|+|++ ++++ . .+..+++|+.|+|++|+|++. ..+..+. +|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l---~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L 222 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENI---PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKL 222 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHC---TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCC
T ss_pred ccccCCHHHHHHHHHHHHHhhC---CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCc
Confidence 45666643 22222222457 8899999999 8887 3 345789999999999998753 2233333 78
Q ss_pred ceEEecCCcCCCCCC
Q 046299 73 NTIILGSCKMGPGFP 87 (138)
Q Consensus 73 ~~L~l~~n~l~~~~p 87 (138)
++|++++|.+.+.+|
T Consensus 223 ~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 223 EELWLDGNSLCDTFR 237 (267)
T ss_dssp SEEECTTSTTGGGCS
T ss_pred ceEEccCCcCccccC
Confidence 999999999987666
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2e-08 Score=74.99 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=35.6
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc-------------CCCCcEEEccCCeeee
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV-------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l~g 133 (138)
++|++|++.+|.+++..+..+... ..+++|++|+++.|.++ .++|+.|++++|.++.
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a-------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLES-------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHC-------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhC-------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 456666666665543221111110 23567999999999887 2678999999888763
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.63 E-value=1.2e-08 Score=79.49 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=55.4
Q ss_pred CCccEEEccc-cccc---cccc-CCCCCCEEEcccC-cccee-CCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEE
Q 046299 26 SFWTSLIILR-KLAG---DIIT-NLSRLAHMDLSFD-LRTFN-FSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVL 98 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~-~l~~L~~L~ls~N-~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ 98 (138)
++|++|++++ .+++ ..+. .+++|++|++++| .++.. ++.....+.+|++|++++|.+++..+.++..+..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--- 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--- 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT---
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh---
Confidence 8899999999 8877 4444 6889999999988 45321 2223335678999999999987655555443321
Q ss_pred eccCCCceeEEEeeCCc
Q 046299 99 ISSFQQYVFRVDIYFQQ 115 (138)
Q Consensus 99 ls~~l~~L~~L~ls~N~ 115 (138)
.+++|+.|++++|.
T Consensus 182 ---~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 ---TYTSLVSLNISCLA 195 (594)
T ss_dssp ---TCCCCCEEECTTCC
T ss_pred ---cCCcCcEEEecccC
Confidence 23345555555554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=2.1e-06 Score=64.78 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=68.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccC---------------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFD--------------------- 56 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N--------------------- 56 (138)
|+.+++++|+++.....+|. . .+|+.+.+...++. ..|.++++|+.+++..|
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~---~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~ 257 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-Y---AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN 257 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-T---CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET
T ss_pred CCeeecCCCcceEechhhEe-e---cccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC
Confidence 56777777776543333332 3 45555555432222 44444444444444432
Q ss_pred ccceeCCCCCccccCcceEEecCCcCC-----CCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-
Q 046299 57 LRTFNFSSGWIPPFQLNTIILGSCKMG-----PGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV- 117 (138)
Q Consensus 57 ~l~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~- 117 (138)
.++..-+.+|..+.+|+.+.+.+|.+. ..-+..|..+.+ .+++. .++++|+.+++..| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 233333455666667777777766653 123344555555 45544 45567777777554 33
Q ss_pred -------CCCCcEEEccCCeee
Q 046299 118 -------SQSWTIIDLGINKFS 132 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~ 132 (138)
..+|+.+++++|.+.
T Consensus 337 I~~~aF~~~~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTSSSSSCCCEEEECCSSCC
T ss_pred EcHHhCCCCCCCEEEEcCCCCc
Confidence 136777777777654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=4.3e-08 Score=70.36 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=47.0
Q ss_pred cCCCCCCEEEcccCccce--eCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 43 TNLSRLAHMDLSFDLRTF--NFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 43 ~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
.++++|+.|+|++|+|++ .+|..+..+.+|+.|+|++|+|++. ..+..+.. + +|++|++++|.++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~-------l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG-------L-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT-------S-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc-------C-CcceEEccCCcCc
Confidence 568889999999999876 4455555677899999999998743 22333321 2 5888999988875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=4.4e-06 Score=62.97 Aligned_cols=103 Identities=8% Similarity=-0.109 Sum_probs=52.9
Q ss_pred CccEEEccccccc---ccccCCCCCCEEEcccCccc-----eeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--e
Q 046299 27 FWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRT-----FNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--D 96 (138)
Q Consensus 27 ~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~ 96 (138)
+|+.+++...++. ..|.++++|+.+++.+|.+. ...+..|..+.+|+.+.+. +.++..-...|..+.+ .
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 4555555333322 45555555555555554442 2333444444455555555 2243222233444443 3
Q ss_pred EEec-----------cCCCceeEEEeeCCccc----------CCCCcEEEccCCee
Q 046299 97 VLIS-----------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKF 131 (138)
Q Consensus 97 L~ls-----------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l 131 (138)
+++. ..+ +|+.+++++|.+. +..++.+++..+.+
T Consensus 328 l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 328 LTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4433 334 6999999998876 34667777766543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=5.5e-07 Score=67.15 Aligned_cols=105 Identities=9% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCccEEEccc-cccc------------ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCC-
Q 046299 26 SFWTSLIILR-KLAG------------DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIP- 91 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~------------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~- 91 (138)
++|+.|.+.. .... ..+..+++|+.|++++|.- ..++. + ...+|+.|++..|.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 6777777754 3311 2345667888888877631 12232 2 255777777777776532111111
Q ss_pred -CCCC--eEEec---------------------cCCCceeEEEeeCCccc------------CCCCcEEEccCCeeee
Q 046299 92 -EMPH--DVLIS---------------------SFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 92 -~l~~--~L~ls---------------------~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~g 133 (138)
.+++ .|+++ ..+++|++|++++|.++ .++|++|||+.|.+++
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2233 34331 24689999999999986 3689999999999875
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=2.2e-07 Score=62.70 Aligned_cols=82 Identities=6% Similarity=-0.134 Sum_probs=54.4
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCc-cceeCCCCCcc----ccCcceEEecCCc-CCCCCCCCCCCCCC
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL-RTFNFSSGWIP----PFQLNTIILGSCK-MGPGFPNPIPEMPH 95 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~p~~~~~l~~ 95 (138)
.+|+.||+++ .++. ..+.++++|+.|+++++. ++-.--..+.. ..+|++|++++|. +|..--..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~--- 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH--- 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG---
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc---
Confidence 4689999999 8876 677889999999999985 54211111222 2368999999985 76321122333
Q ss_pred eEEeccCCCceeEEEeeCCc-cc
Q 046299 96 DVLISSFQQYVFRVDIYFQQ-YV 117 (138)
Q Consensus 96 ~L~ls~~l~~L~~L~ls~N~-l~ 117 (138)
+++|++|+++++. ++
T Consensus 138 -------~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 -------FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -------CTTCCEEEEESCTTCC
T ss_pred -------CCCCCEEECCCCCCCC
Confidence 3458899998874 54
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=2.5e-06 Score=57.57 Aligned_cols=78 Identities=6% Similarity=0.017 Sum_probs=47.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc---ccccCC----CCCCEEEcccCc-cceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIITNL----SRLAHMDLSFDL-RTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l----~~L~~L~ls~N~-l~~~~~~~~~~~~ 70 (138)
|++||++++.++..--..+..+ ++|+.|+|++ .+++ ..++.+ ++|++|+++++. ++-.--..+..+.
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~---~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGL---QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTC---SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred EeEEeCcCCCccHHHHHHhcCC---CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4677777777655433444555 7777777777 5665 445553 367777777763 5421112234556
Q ss_pred CcceEEecCCc
Q 046299 71 QLNTIILGSCK 81 (138)
Q Consensus 71 ~L~~L~l~~n~ 81 (138)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.70 E-value=0.00036 Score=51.98 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=54.9
Q ss_pred ccccCCCCCCCccEEEccc-ccc-c-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCC
Q 046299 17 KASDSFPSFSFWTSLIILR-KLA-G-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~-~l~-~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 93 (138)
.+|.++ ..|+.+.+.. ..+ + ..|.++++|+.+.+. +.++......|..+.+|+.+.+..+ ++..-...|.++
T Consensus 259 ~aF~~c---~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSC---AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTC---SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ceeeec---ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 345555 6667666655 211 1 566666666666664 3343344445555666666666543 332223345555
Q ss_pred CC--eEEec-----------cCCCceeEEEeeCCccc------CCCCcEEEccCCee
Q 046299 94 PH--DVLIS-----------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKF 131 (138)
Q Consensus 94 ~~--~L~ls-----------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l 131 (138)
.+ .+.+. .++++|+.+++.++... ...|+.+.+..|.+
T Consensus 334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 44 44443 44566888888877654 45677777666544
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=1.6e-05 Score=54.44 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=60.3
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCccceeCCCC----CccccCcceEEecCCcCCCC----CCC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSG----WIPPFQLNTIILGSCKMGPG----FPN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~p~ 88 (138)
+.|++|+|++ ++.. +.+..-+.|+.|+|++|.+.-.--.. +.....|++|+|++|.|++. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 6788888875 4543 45666778888888888885221122 22334688888888888632 111
Q ss_pred CCCCCCCeEEeccCCCceeEEEeeCC---ccc-------------CCCCcEEEccCCee
Q 046299 89 PIPEMPHDVLISSFQQYVFRVDIYFQ---QYV-------------SQSWTIIDLGINKF 131 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L~ls~N---~l~-------------~~~L~~L~Ls~N~l 131 (138)
.+..- +.|++|+|++| .+. -+.|+.|+++.|.+
T Consensus 121 aL~~N----------~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVT----------QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTT----------CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhC----------CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22222 34888888765 334 36788888887764
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00057 Score=43.49 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=37.6
Q ss_pred EEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccc
Q 046299 3 DLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 3 ~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~ 59 (138)
.++.+++.++ ..+|..+. .++++|+|++ +|+. ..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677788886 24664332 4688888888 8877 66788888888888888763
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.27 E-value=0.00057 Score=43.52 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=27.5
Q ss_pred EEEcccCccc-eeCCCCCccccCcceEEecCCcCCCCCCCC-CCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 50 HMDLSFDLRT-FNFSSGWIPPFQLNTIILGSCKMGPGFPNP-IPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 50 ~L~ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
.++.+++.++ ..+|..+. .++++|+|++|+|+ .+|.. |..++ +|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~----------~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALP----------ALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCT----------TCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhcc----------ccCEEEecCCCee
Confidence 4555555553 23443332 24666666666665 33332 33333 3666666666554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0018 Score=47.75 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=40.9
Q ss_pred CccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCC
Q 046299 16 TKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPE 92 (138)
Q Consensus 16 p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 92 (138)
..++.++ ..|+.+.+...++. ..|.++.+|+.+.+..+ ++......|..+.+|+.+.+.++.++..-...|.+
T Consensus 233 ~~~f~~~---~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 233 DGAFYGM---KALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp TTTTTTC---SSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred cccccCC---ccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 3445555 66666666542222 56666666666666543 33333445555666666666666665222334554
Q ss_pred CCC
Q 046299 93 MPH 95 (138)
Q Consensus 93 l~~ 95 (138)
+.+
T Consensus 309 c~~ 311 (379)
T 4h09_A 309 CVK 311 (379)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.00012 Score=50.20 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=69.2
Q ss_pred CcEEEccCc-cccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGNN-RLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~N-~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|+|++| +|... +.+.+..- +.|+.|+|++ ++.. ..+..-+.|+.|+|++|.|+.. +-
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N---~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNS---KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTC---SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhC---CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 678999986 77431 33455556 8899999999 9986 4455678899999999999621 22
Q ss_pred CCCccccCcceEEecCCc---CCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 64 SGWIPPFQLNTIILGSCK---MGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 64 ~~~~~~~~L~~L~l~~n~---l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..+.....|++|++++|. +... +.+.+.. -+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~----------N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE----------NESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH----------CSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh----------CCCcCeEeccCCCcc
Confidence 233444579999998763 3321 1111221 235888888877653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.02 E-value=0.0069 Score=44.97 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=12.2
Q ss_pred CceeEEEeeCCccc---------CCCCcEEEccC
Q 046299 104 QYVFRVDIYFQQYV---------SQSWTIIDLGI 128 (138)
Q Consensus 104 ~~L~~L~ls~N~l~---------~~~L~~L~Ls~ 128 (138)
++|+.+++..| ++ ..+|+.+++..
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 34666655544 32 24566665543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.012 Score=43.23 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=32.7
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
.+|.++ .+|+.+.+...++. ..|.++++|+.+.+..+.++..-+.+|..+.+|+.+.+..
T Consensus 257 ~aF~~~---~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 257 FLLQNC---TALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTTC---TTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccee---ehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 344444 55666665442222 5566666666666665555544445555555666666643
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.94 E-value=0.0098 Score=44.13 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=68.4
Q ss_pred CCccEEEcccccc--c-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 26 SFWTSLIILRKLA--G-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~~l~--~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
..+....+...++ + ..|.++.+|+.+.+..+.. ..-...|..+.+|+.+.+. +.++..-...|..+.+ .+++.
T Consensus 242 ~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 242 REDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 4455555544222 2 7888999999999877654 3445567777889999886 4455233345666666 67665
Q ss_pred -----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCe
Q 046299 101 -----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINK 130 (138)
Q Consensus 101 -----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~ 130 (138)
.++.+|+.+.+..+ ++ ..+|+.+++.++.
T Consensus 320 ~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 320 EGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 56788888888655 33 4678888888764
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.92 E-value=0.0024 Score=47.43 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=57.4
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 93 (138)
..|..+ .+|+.+.+...++. .+|.++++|+.+++..+ ++..-..+|..+.+|+.+.+..+ ++..-..+|.++
T Consensus 291 ~~F~~~---~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGC---SSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTC---TTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccc---ccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 456667 88888888663333 78889999999998754 65555677888888999988766 553334456665
Q ss_pred CCeEEeccCCCceeEEEeeCC
Q 046299 94 PHDVLISSFQQYVFRVDIYFQ 114 (138)
Q Consensus 94 ~~~L~ls~~l~~L~~L~ls~N 114 (138)
.+ |+.+++..+
T Consensus 366 ~~----------L~~i~lp~~ 376 (394)
T 4fs7_A 366 IN----------LKKVELPKR 376 (394)
T ss_dssp TT----------CCEEEEEGG
T ss_pred CC----------CCEEEECCC
Confidence 55 666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.10 E-value=6.5 Score=23.27 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=30.6
Q ss_pred cccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccC
Q 046299 10 RLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFD 56 (138)
Q Consensus 10 ~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N 56 (138)
.++.+-..+|.++ .+|+.+.+...++. ..|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c---~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGN---TVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTC---TTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCC---CCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 4455555667777 88888888663332 77888888888887654
Done!