BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046301
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 31 LSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWE---DVLTSKIW-----DLAEDRSS 82
L E I+ C GSPL +G+LLRD P WE L +K + + D +
Sbjct: 312 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEA 369
Query: 83 IMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELG 142
+ A+ +S L +K + S L K + + + +LW E E ++E
Sbjct: 370 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET----EEVEDILQEFV 425
Query: 143 RKS--FQVLHSRSFFQWSKIDASRFLMHDLIHDL 174
KS F + +SF R+ +HDL D
Sbjct: 426 NKSLLFCDRNGKSF---------RYYLHDLQVDF 450
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 31 LSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWE---DVLTSKIWDLAEDRSS----- 82
L E I+ C GSPL +G+LLRD P WE L +K + SS
Sbjct: 306 LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEA 363
Query: 83 IMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAE 126
+ A+ +S L +K + S L K + + + +LW E
Sbjct: 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 263 LCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE 322
L G + +LP +I L +LR LD SH + LP ++G+ L++ N++
Sbjct: 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA-----ELGSCFQLKYFY-FFDNMVTT 307
Query: 323 MPLRIGKLTSLRTLA 337
+P G L +L+ L
Sbjct: 308 LPWEFGNLCNLQFLG 322
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRH 311
+ L LRV+ L ++ LP ++ L+Y F + LP + GNL NL+
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPW-----EFGNLCNLQF 320
Query: 312 LKDSHSNLLEEMPLRI 327
L N LE+ L+I
Sbjct: 321 L-GVEGNPLEKQFLKI 335
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 221 LHKVEYLR--TFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE- 277
LH + L+ T L L+ T N VF + L++L +V ++ LP+ + +
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE---NQLQSLPDGVFDK 131
Query: 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 336
L +L YL+ +H ++ LP+ +F + NL L D N L+ +P + KLT L+ L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL----DLSYNQLQSLPEGVFDKLTQLKDL 186
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 38 IVDRCNGSPLAAKTLGSLLRD----------KYDPKDWEDVLTSKIWDLAEDRSSIMGAL 87
I+ C GSPL +G+LLRD + K ++ + S +D ++ A+
Sbjct: 320 IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDY----EALDEAM 375
Query: 88 RVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAE 126
+S L +K + S L K + + + +LW E
Sbjct: 376 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 414
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 205 LSYLTSQFDGI----KRFEGLHKVEYL---------RTFLALLLGTRKTFY--------- 242
L YL F+G+ F GL ++E+L + ++ L R Y
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 243 VTNNLVFHVVPRLRQLRVVSLCGYKIVQ--LPNDIAELKHLRYLDFSHTAIEVLPESKLF 300
V N +F+ L L V+ + G + LP+ EL++L +LD S +E +L
Sbjct: 435 VAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-----QLS 486
Query: 301 PDVGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 336
P N ++ + + SN L+ +P I +LTSL+ +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 38 IVDRCNGSPLAAKTLGSLLRD----------KYDPKDWEDVLTSKIWDLAEDRSSIMGAL 87
I+ C GSPL +G+LLRD + K ++ + S +D ++ A+
Sbjct: 313 IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDY----EALDEAM 368
Query: 88 RVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAE 126
+S L +K + S L K + + + +LW E
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
+L++LD S A + LP K F GN+ L+ L S ++L + L I L ++K
Sbjct: 91 NLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLSTTHLEKSSVLPIAHL----NISKV 143
Query: 340 VVGKGNCYGLKE 351
++ G YG KE
Sbjct: 144 LLVLGETYGEKE 155
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYL 284
+ L L LGT + V + VF RL L+ + +C K+ +LP I L HL +L
Sbjct: 85 DSLTQLTVLDLGTNQ-LTVLPSAVFD---RLVHLKELFMCCNKLTELPRGIERLTHLTHL 140
Query: 285 DFSHTAIEVLP 295
++ +P
Sbjct: 141 ALDQNQLKSIP 151
>pdb|1XXG|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin G
Length = 233
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 160 IDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNER 196
I++ +FL HDLI + ++ E+ + +E+T NN +
Sbjct: 40 INSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYK 76
>pdb|3MC0|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A Mouse T-Cell Receptor Beta Chain
pdb|3MC0|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A Mouse T-Cell Receptor Beta Chain
Length = 239
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 160 IDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNER 196
I++ +FL HDLI + ++ E+ + +E+T NN +
Sbjct: 40 INSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYK 76
>pdb|3OWE|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|F Chain F, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|H Chain H, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|J Chain J, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|L Chain L, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|N Chain N, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|P Chain P, Crystal Structure Of Staphylococcal Enterotoxin G (Seg) In
Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
Length = 234
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 160 IDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNER 196
I++ +FL HDLI + ++ E+ + +E+T NN +
Sbjct: 41 INSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYK 77
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 21 GRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLR---DKYDPKDWEDVLTSKIWDL- 76
G TDF+ + L+ IG+ SPL T+G L+ K + ++W D+L K+ L
Sbjct: 86 GVTDFIKSECLNNIGD-------SSPLIRATVGILITTIASKGELQNWPDLL-PKLCSLL 137
Query: 77 -AEDRSSIMGAL 87
+ED ++ GA
Sbjct: 138 DSEDYNTCEGAF 149
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 6 LLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLR---DKYDP 62
+L+++ F G TDF+ + L+ IG+ SPL T+G L+ K +
Sbjct: 71 ILKNNVKAHFQNFPNGVTDFIKSECLNNIGD-------SSPLIRATVGILITTIASKGEL 123
Query: 63 KDWEDVLTSKIWDL--AEDRSSIMGAL 87
++W D+L K+ L +ED ++ GA
Sbjct: 124 QNWPDLL-PKLCSLLDSEDYNTCEGAF 149
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 21 GRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLR---DKYDPKDWEDVLTSKIWDL- 76
G TDF+ + L+ IG+ SPL T+G L+ K + ++W D+L K+ L
Sbjct: 86 GVTDFIKSECLNNIGD-------SSPLIRATVGILITTIASKGELQNWPDLL-PKLCSLL 137
Query: 77 -AEDRSSIMGAL 87
+ED ++ GA
Sbjct: 138 DSEDYNTCEGAF 149
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 21 GRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLR---DKYDPKDWEDVLTSKIWDL- 76
G TDF+ + L+ IG+ SPL T+G L+ K + ++W D+L K+ L
Sbjct: 86 GVTDFIKSECLNNIGD-------SSPLIRATVGILITTIASKGELQNWPDLL-PKLCSLL 137
Query: 77 -AEDRSSIMGAL 87
+ED ++ GA
Sbjct: 138 DSEDYNTCEGAF 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,999,946
Number of Sequences: 62578
Number of extensions: 501519
Number of successful extensions: 1156
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 26
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)