Query 046301
Match_columns 404
No_of_seqs 234 out of 2888
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-52 5.1E-57 426.3 19.8 382 1-397 312-729 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-37 2.2E-42 334.2 22.0 356 1-396 346-736 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 1.4E-21 3.1E-26 180.2 3.3 131 1-132 152-285 (287)
4 KOG0617 Ras suppressor protein 99.4 5.8E-14 1.3E-18 113.2 -1.2 163 214-397 22-185 (264)
5 KOG0617 Ras suppressor protein 99.3 1.5E-14 3.4E-19 116.5 -5.1 152 200-368 33-184 (264)
6 KOG0444 Cytoskeletal regulator 99.3 4.3E-14 9.3E-19 134.6 -3.7 179 200-396 55-233 (1255)
7 PLN00113 leucine-rich repeat r 99.3 3.1E-12 6.7E-17 137.4 8.8 132 255-396 139-271 (968)
8 PLN00113 leucine-rich repeat r 99.3 4.6E-12 1E-16 136.1 6.7 107 221-338 160-267 (968)
9 KOG0444 Cytoskeletal regulator 99.3 2.1E-13 4.6E-18 130.0 -4.2 160 220-397 192-351 (1255)
10 KOG0472 Leucine-rich repeat pr 99.2 5.4E-12 1.2E-16 114.7 1.9 177 203-396 209-539 (565)
11 KOG4194 Membrane glycoprotein 98.9 1.5E-10 3.4E-15 110.0 -1.1 134 252-395 289-426 (873)
12 PF14580 LRR_9: Leucine-rich r 98.8 6.8E-10 1.5E-14 93.0 0.4 101 257-366 20-122 (175)
13 KOG0618 Serine/threonine phosp 98.8 4.7E-10 1E-14 112.0 -0.7 109 276-397 380-488 (1081)
14 KOG0472 Leucine-rich repeat pr 98.8 1.6E-10 3.5E-15 105.3 -4.0 130 252-396 133-286 (565)
15 KOG4194 Membrane glycoprotein 98.8 1.7E-09 3.6E-14 103.1 2.1 39 353-396 290-328 (873)
16 PLN03210 Resistant to P. syrin 98.8 1.4E-08 3E-13 110.4 8.3 145 223-394 609-756 (1153)
17 KOG0532 Leucine-rich repeat (L 98.6 6.4E-09 1.4E-13 98.9 -1.5 152 222-398 95-247 (722)
18 KOG0618 Serine/threonine phosp 98.5 7.2E-09 1.6E-13 103.7 -1.8 135 248-395 375-510 (1081)
19 PF13855 LRR_8: Leucine rich r 98.5 7.3E-08 1.6E-12 66.3 3.6 58 256-317 1-59 (61)
20 KOG4658 Apoptotic ATPase [Sign 98.5 8.4E-08 1.8E-12 99.9 3.7 158 219-395 517-678 (889)
21 PF14580 LRR_9: Leucine-rich r 98.5 1.8E-07 4E-12 78.4 4.9 125 201-341 20-150 (175)
22 KOG4237 Extracellular matrix p 98.5 3.9E-08 8.5E-13 89.8 0.6 84 303-395 270-356 (498)
23 PRK15370 E3 ubiquitin-protein 98.4 7.4E-07 1.6E-11 91.5 8.5 106 198-327 197-302 (754)
24 KOG1259 Nischarin, modulator o 98.4 5.1E-08 1.1E-12 86.0 -0.2 132 252-397 280-411 (490)
25 PRK15387 E3 ubiquitin-protein 98.4 2.1E-06 4.6E-11 87.9 11.1 22 377-398 437-458 (788)
26 cd00116 LRR_RI Leucine-rich re 98.4 7.8E-08 1.7E-12 89.9 -0.1 169 220-397 76-262 (319)
27 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 3.1E-12 88.1 1.7 166 225-396 108-289 (319)
28 PRK15370 E3 ubiquitin-protein 98.4 8.9E-07 1.9E-11 90.9 7.5 37 358-396 390-426 (754)
29 PF12799 LRR_4: Leucine Rich r 98.3 6E-07 1.3E-11 56.8 3.0 40 256-295 1-40 (44)
30 KOG4237 Extracellular matrix p 98.2 1.1E-07 2.4E-12 86.8 -1.6 129 258-396 69-199 (498)
31 PLN03150 hypothetical protein; 98.2 1.7E-06 3.6E-11 88.0 6.1 79 258-340 420-499 (623)
32 PLN03150 hypothetical protein; 98.2 1.9E-06 4.2E-11 87.6 5.9 99 227-336 420-520 (623)
33 PF13855 LRR_8: Leucine rich r 98.2 2.2E-06 4.8E-11 58.8 3.9 60 225-291 1-61 (61)
34 COG4886 Leucine-rich repeat (L 98.1 1.8E-06 3.9E-11 83.3 3.0 130 252-396 159-288 (394)
35 KOG3207 Beta-tubulin folding c 98.0 1.2E-06 2.6E-11 81.2 0.5 68 220-292 141-210 (505)
36 KOG0532 Leucine-rich repeat (L 98.0 2.2E-07 4.7E-12 88.7 -4.7 133 248-396 90-222 (722)
37 KOG3207 Beta-tubulin folding c 98.0 1.7E-06 3.8E-11 80.2 0.7 86 223-317 195-281 (505)
38 PRK15387 E3 ubiquitin-protein 98.0 3.1E-05 6.7E-10 79.5 9.2 38 256-296 282-319 (788)
39 KOG3665 ZYG-1-like serine/thre 97.9 4.7E-06 1E-10 84.8 2.9 58 252-315 144-203 (699)
40 KOG1259 Nischarin, modulator o 97.9 1.4E-06 3E-11 77.1 -0.9 81 252-339 325-407 (490)
41 COG4886 Leucine-rich repeat (L 97.9 7.4E-06 1.6E-10 79.1 3.3 153 222-396 113-266 (394)
42 PF12799 LRR_4: Leucine Rich r 97.9 9.1E-06 2E-10 51.4 2.4 40 279-324 1-40 (44)
43 KOG1859 Leucine-rich repeat pr 97.4 8.7E-06 1.9E-10 80.2 -3.8 76 255-338 186-261 (1096)
44 KOG1859 Leucine-rich repeat pr 97.4 6E-06 1.3E-10 81.3 -5.1 127 255-396 163-290 (1096)
45 KOG3665 ZYG-1-like serine/thre 97.4 5.6E-05 1.2E-09 77.1 1.4 108 200-317 122-230 (699)
46 PRK15386 type III secretion pr 97.4 0.00042 9E-09 65.6 7.0 65 252-326 48-113 (426)
47 KOG0531 Protein phosphatase 1, 97.2 0.00014 2.9E-09 70.7 1.8 100 221-336 91-191 (414)
48 KOG0531 Protein phosphatase 1, 97.1 0.00015 3.2E-09 70.5 0.8 105 250-366 89-195 (414)
49 KOG4579 Leucine-rich repeat (L 97.1 8.1E-05 1.8E-09 58.6 -0.9 67 252-324 73-139 (177)
50 KOG4579 Leucine-rich repeat (L 97.1 8.7E-05 1.9E-09 58.5 -1.0 80 252-337 49-129 (177)
51 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 62.1 1.6 82 253-341 40-126 (260)
52 KOG1644 U2-associated snRNP A' 96.7 0.0013 2.9E-08 55.3 2.8 104 256-367 42-150 (233)
53 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.9E-08 57.6 2.2 87 252-342 61-154 (260)
54 KOG1644 U2-associated snRNP A' 96.4 0.0031 6.7E-08 53.2 3.6 89 250-342 58-151 (233)
55 PRK15386 type III secretion pr 96.4 0.0072 1.5E-07 57.5 6.4 29 256-290 94-123 (426)
56 PF00560 LRR_1: Leucine Rich R 96.1 0.0029 6.2E-08 33.3 1.0 19 258-276 2-20 (22)
57 KOG1909 Ran GTPase-activating 96.0 0.0024 5.2E-08 58.2 0.8 175 220-398 87-283 (382)
58 KOG1909 Ran GTPase-activating 96.0 0.0015 3.3E-08 59.5 -0.6 92 223-317 155-251 (382)
59 PRK04841 transcriptional regul 95.7 0.13 2.9E-06 55.3 12.7 145 5-179 185-332 (903)
60 KOG2123 Uncharacterized conser 95.6 0.00072 1.6E-08 59.7 -3.9 101 224-337 18-123 (388)
61 KOG2982 Uncharacterized conser 95.6 0.0069 1.5E-07 54.2 1.9 86 224-317 70-156 (418)
62 KOG2120 SCF ubiquitin ligase, 95.5 0.0005 1.1E-08 61.3 -5.3 65 304-369 310-375 (419)
63 PF00560 LRR_1: Leucine Rich R 95.4 0.0075 1.6E-07 31.6 1.0 15 281-295 2-16 (22)
64 KOG2120 SCF ubiquitin ligase, 95.1 0.0011 2.3E-08 59.2 -4.6 180 202-395 187-373 (419)
65 PF13504 LRR_7: Leucine rich r 95.0 0.013 2.9E-07 28.5 1.1 13 281-293 3-15 (17)
66 KOG2123 Uncharacterized conser 94.7 0.0023 5E-08 56.6 -3.4 78 254-339 17-96 (388)
67 PF13504 LRR_7: Leucine rich r 94.1 0.035 7.6E-07 27.0 1.4 17 256-272 1-17 (17)
68 smart00369 LRR_TYP Leucine-ric 92.0 0.12 2.5E-06 28.2 1.7 18 279-296 2-19 (26)
69 smart00370 LRR Leucine-rich re 92.0 0.12 2.5E-06 28.2 1.7 18 279-296 2-19 (26)
70 KOG0473 Leucine-rich repeat pr 91.9 0.0076 1.6E-07 52.1 -4.7 62 252-318 61-122 (326)
71 KOG2982 Uncharacterized conser 90.9 0.13 2.7E-06 46.4 1.6 84 250-337 65-152 (418)
72 smart00369 LRR_TYP Leucine-ric 90.5 0.18 4E-06 27.4 1.5 22 255-276 1-22 (26)
73 smart00370 LRR Leucine-rich re 90.5 0.18 4E-06 27.4 1.5 22 255-276 1-22 (26)
74 PF13306 LRR_5: Leucine rich r 89.3 0.83 1.8E-05 35.9 5.2 78 251-336 7-86 (129)
75 COG5238 RNA1 Ran GTPase-activa 85.9 0.65 1.4E-05 41.5 2.7 46 220-268 87-132 (388)
76 PF13306 LRR_5: Leucine rich r 84.4 2.3 5E-05 33.3 5.2 98 222-336 9-108 (129)
77 smart00364 LRR_BAC Leucine-ric 83.7 0.75 1.6E-05 25.1 1.3 17 280-296 3-19 (26)
78 COG5238 RNA1 Ran GTPase-activa 83.6 0.65 1.4E-05 41.5 1.7 167 220-396 25-225 (388)
79 KOG0473 Leucine-rich repeat pr 83.5 0.066 1.4E-06 46.4 -4.3 76 255-336 41-116 (326)
80 TIGR03015 pepcterm_ATPase puta 80.6 5.9 0.00013 35.7 7.0 56 1-56 187-242 (269)
81 smart00365 LRR_SD22 Leucine-ri 79.0 1.7 3.8E-05 23.7 1.8 16 278-293 1-16 (26)
82 KOG3864 Uncharacterized conser 76.1 0.37 8.1E-06 41.0 -2.1 78 257-338 102-183 (221)
83 KOG4341 F-box protein containi 75.8 1.3 2.9E-05 41.9 1.2 133 253-391 317-458 (483)
84 PRK00080 ruvB Holliday junctio 75.2 15 0.00033 34.3 8.2 132 2-157 176-309 (328)
85 TIGR00635 ruvB Holliday juncti 75.1 16 0.00034 33.7 8.2 131 2-157 155-288 (305)
86 KOG1947 Leucine rich repeat pr 74.2 1.1 2.3E-05 44.2 0.2 138 251-392 183-328 (482)
87 KOG1947 Leucine rich repeat pr 71.4 0.79 1.7E-05 45.1 -1.5 112 224-343 187-307 (482)
88 PF13516 LRR_6: Leucine Rich r 68.6 2.7 5.9E-05 22.1 0.9 13 279-291 2-14 (24)
89 smart00368 LRR_RI Leucine rich 58.9 7.9 0.00017 21.3 1.7 14 279-292 2-15 (28)
90 KOG3864 Uncharacterized conser 55.8 1.6 3.4E-05 37.3 -2.3 91 279-374 101-193 (221)
91 smart00367 LRR_CC Leucine-rich 54.6 8.8 0.00019 20.6 1.4 14 307-320 2-15 (26)
92 KOG4341 F-box protein containi 52.0 1.6 3.6E-05 41.3 -3.0 36 280-318 139-175 (483)
93 PRK00411 cdc6 cell division co 40.5 2.8E+02 0.0061 26.4 10.3 141 2-157 203-357 (394)
94 PF14050 Nudc_N: N-terminal co 40.1 49 0.0011 22.4 3.5 31 31-61 3-33 (62)
95 KOG4308 LRR-containing protein 36.1 0.56 1.2E-05 46.2 -9.2 39 357-396 263-301 (478)
96 PF14516 AAA_35: AAA-like doma 34.0 3.7E+02 0.008 25.1 9.6 50 2-59 197-246 (331)
97 COG2909 MalT ATP-dependent tra 30.6 4E+02 0.0087 28.5 9.6 146 5-181 193-340 (894)
98 PF09150 Carot_N: Orange carot 28.5 2E+02 0.0042 23.7 5.7 53 85-151 86-138 (159)
99 COG3903 Predicted ATPase [Gene 23.3 6E+02 0.013 24.6 8.7 164 3-176 138-311 (414)
100 COG3899 Predicted ATPase [Gene 23.3 5.2E+02 0.011 27.9 9.5 155 2-176 215-383 (849)
101 PF13730 HTH_36: Helix-turn-he 22.9 1.6E+02 0.0035 18.7 3.7 51 93-155 2-55 (55)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-52 Score=426.34 Aligned_cols=382 Identities=27% Similarity=0.405 Sum_probs=305.7
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhc----
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDL---- 76 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~---- 76 (404)
++|++|+++|||+||++.||+... ...++++++|++|+++|+|+|||+.++|+.|+.|++..+|+.+.+.+.+..
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 579999999999999999986643 344669999999999999999999999999999999999999998765542
Q ss_pred cccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcc
Q 046301 77 AEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQ 156 (404)
Q Consensus 77 ~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~ 156 (404)
....+.++.+|++|||+||++.|.||+|||.||+|++|+++.++.+|+|+||+.+..++..+++.|+.++.+|+++||+.
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 22346899999999999998899999999999999999999999999999999997778889999999999999999998
Q ss_pred ccc--CCCceEEechHHHHHHHhhhc-----CceEEcccccC--CCCccccCCCcceEEEEeccCccccccccccCCCCc
Q 046301 157 WSK--IDASRFLMHDLIHDLACWAFG-----EISSSMESTWD--GNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYL 227 (404)
Q Consensus 157 ~~~--~~~~~~~mhdli~~~~~~i~~-----~~~~~~~~~~~--~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L 227 (404)
..+ ....+|+|||++||||.|++. ++......... .......+..+|+++++.+.+... ....+.+.|
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L 547 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKL 547 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCcc
Confidence 755 345789999999999999999 45443332101 011222345689999988876543 344556689
Q ss_pred cEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCCCcccCCCCCCCcccccc
Q 046301 228 RTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNL 306 (404)
Q Consensus 228 ~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l 306 (404)
++|.+..+.. ....+...+|..++.|++|||++|. +..+|..|+.|.+||||+++++.++.+|.+ +++|
T Consensus 548 ~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-----l~~L 617 (889)
T KOG4658|consen 548 RTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-----LGNL 617 (889)
T ss_pred ceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-----HHHH
Confidence 9999987652 2455667779999999999999876 779999999999999999999999988876 9999
Q ss_pred ccCceeecCCCCccccccccccccccccccCceEec-cCCcCCccccccccccccceEEcCCCC---C------------
Q 046301 307 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCYGLKELRSLMHLQEKLTISGLEN---V------------ 370 (404)
Q Consensus 307 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~-~~~~~~~~~l~~L~~L~~~L~l~~~~~---~------------ 370 (404)
..|.+|++..+..+..+|..+..|++|++|.++... ......+.++..|.+|+ .+.++..+. .
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchhHhHhhhhhhHHHHHHh
Confidence 999999999997777776656679999999887654 22344566777777777 666644322 0
Q ss_pred ------CCHhHHHhccccCccCCCceEEEecCC
Q 046301 371 ------NDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 371 ------~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
........+.+..+.+|+.|.+..+..
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 011133445677888899999876654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-37 Score=334.16 Aligned_cols=356 Identities=20% Similarity=0.215 Sum_probs=221.7
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccc
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDR 80 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~ 80 (404)
|+|+.|+++|||+||+++||++.. +++++++++++|+++|+|+||||+++|+.|+++ +..+|+.+++++.... .
T Consensus 346 ~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~ 419 (1153)
T PLN03210 346 YEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---D 419 (1153)
T ss_pred EEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---c
Confidence 689999999999999999998753 456799999999999999999999999999998 8999999999875432 3
Q ss_pred hhHHHHHHHHHhcCCh-hhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCccccc
Q 046301 81 SSIMGALRVSYHYLPS-YVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSK 159 (404)
Q Consensus 81 ~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~ 159 (404)
..|.++|++||+.|++ .+|.||+|+||||.+.++ +.+..|++.+.... ...++.|+++||++..
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~- 484 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR- 484 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc-
Confidence 5899999999999987 599999999999999654 34667777654432 1238899999999864
Q ss_pred CCCceEEechHHHHHHHhhhcCceEEccc---ccCCCC------ccccCCCcceEEEEeccCcccc-ccccccCCCCccE
Q 046301 160 IDASRFLMHDLIHDLACWAFGEISSSMES---TWDGNN------ERRFSRNLRHLSYLTSQFDGIK-RFEGLHKVEYLRT 229 (404)
Q Consensus 160 ~~~~~~~mhdli~~~~~~i~~~~~~~~~~---~~~~~~------~~~~~~~~r~l~~~~~~~~~~~-~~~~~~~~~~L~~ 229 (404)
..++.|||++|+||+++++++...... -|...+ .......++.+++..+...... ....+.++++|+.
T Consensus 485 --~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~ 562 (1153)
T PLN03210 485 --EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF 562 (1153)
T ss_pred --CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence 357999999999999998765411000 011100 0111234566655544433221 1234667888888
Q ss_pred EEecccCccccccccchhhhhhhcc-----------------------CccccEEEecCCCccccCcccccCCCcceEec
Q 046301 230 FLALLLGTRKTFYVTNNLVFHVVPR-----------------------LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDF 286 (404)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~~~~~~~-----------------------l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l 286 (404)
|.+..............+ +..|.. +.+|+.|++.++.+..+|.++..+++|++|++
T Consensus 563 L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 563 LKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641 (1153)
T ss_pred EEEecccccccccceeec-CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEEC
Confidence 877543210000000111 111222 23445555555555555555555555555555
Q ss_pred CCC-CcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEc
Q 046301 287 SHT-AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTIS 365 (404)
Q Consensus 287 ~~~-~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~ 365 (404)
+++ .++.+|. ++.+++|++|++++|..+..+|.+++++++|+.|++..+... ..++.-.++++|+ .|.++
T Consensus 642 s~~~~l~~ip~------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L--~~Lp~~i~l~sL~-~L~Ls 712 (1153)
T PLN03210 642 RGSKNLKEIPD------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL--EILPTGINLKSLY-RLNLS 712 (1153)
T ss_pred CCCCCcCcCCc------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc--CccCCcCCCCCCC-EEeCC
Confidence 554 2444331 555666666666666556666666666666666644322111 1111111455555 56666
Q ss_pred CCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 366 GLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+|..+..++. ...+|+.|+++.+.
T Consensus 713 gc~~L~~~p~-------~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 713 GCSRLKSFPD-------ISTNISWLDLDETA 736 (1153)
T ss_pred CCCCcccccc-------ccCCcCeeecCCCc
Confidence 5554433322 12456666665554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.83 E-value=1.4e-21 Score=180.18 Aligned_cols=131 Identities=31% Similarity=0.605 Sum_probs=106.7
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccc--
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAE-- 78 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~-- 78 (404)
|+|++|+++||++||++.++... ...++.+++++++|+++|+|+||||+++|++|+.+.+...|+.+++.+.....+
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~ 230 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR 230 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999997655 223455668899999999999999999999997766789999998876554432
Q ss_pred -cchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccC
Q 046301 79 -DRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE 132 (404)
Q Consensus 79 -~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~ 132 (404)
....+..++..||+.||++.|+||+|||+||+++.|+++.++.+|+++|++...
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 347899999999999999999999999999999999999999999999999763
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=5.8e-14 Score=113.17 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=127.2
Q ss_pred cccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCccc
Q 046301 214 GIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEV 293 (404)
Q Consensus 214 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~ 293 (404)
.+...+++.+++.+..|.+..+. . ...+..+..+.+|++|++.+|+++++|.+++.|+.|+.|++.-|++..
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNK-------l-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~ 93 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNK-------L-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI 93 (264)
T ss_pred cHhhcccccchhhhhhhhcccCc-------e-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc
Confidence 33456677788888888887765 2 233445888999999999999999999999999999999999999987
Q ss_pred CCCCCCCccccccccCceeecCCCCccc-cccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCC
Q 046301 294 LPESKLFPDVGNLVNLRHLKDSHSNLLE-EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVND 372 (404)
Q Consensus 294 lp~~~~p~~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~ 372 (404)
+|.+ ++.+|.|+.||+.+|+... .+|-.|-.|+.|+.|.+.+++. ...+.++++|++|+ .|.+.+..-
T Consensus 94 lprg-----fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lq-il~lrdndl--- 162 (264)
T KOG0617|consen 94 LPRG-----FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQ-ILSLRDNDL--- 162 (264)
T ss_pred Cccc-----cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhccee-EEeeccCch---
Confidence 7776 9999999999999884333 5777788888888885443222 34567899999999 888877443
Q ss_pred HhHHHhccccCccCCCceEEEecCC
Q 046301 373 AEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
-.+|..++.+..|+.|+++.|+-
T Consensus 163 --l~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 163 --LSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred --hhCcHHHHHHHHHHHHhccccee
Confidence 23456688889999999988863
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-14 Score=116.47 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=123.7
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..+.++.+.++.... ..+.+..+.+|..|.++++. ....+..+++++.||.|++.-|.+..+|.+++.++
T Consensus 33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnq--------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQ--------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccch--------hhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 456777777776654 34667778888888887765 23345568999999999999999999999999999
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ 359 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 359 (404)
.|+.||+.+|++.+ ..+|..+..|+.|+-|++++| ....+|..+++|++|+.|.+.+++. ...+.+++.|++|+
T Consensus 103 ~levldltynnl~e---~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNE---NSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLR 176 (264)
T ss_pred hhhhhhcccccccc---ccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHH
Confidence 99999999998763 345666999999999999999 8999999999999999996554332 44677899999999
Q ss_pred cceEEcCCC
Q 046301 360 EKLTISGLE 368 (404)
Q Consensus 360 ~~L~l~~~~ 368 (404)
.|.|.+..
T Consensus 177 -elhiqgnr 184 (264)
T KOG0617|consen 177 -ELHIQGNR 184 (264)
T ss_pred -HHhcccce
Confidence 99998754
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=4.3e-14 Score=134.64 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=126.9
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..+.+|+..++.... ....++.++.||++++..+. -...+++++ +-.+..|.+|||+.|++.+.|..+..-+
T Consensus 55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~-----LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AK 126 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNN-----LKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAK 126 (1255)
T ss_pred hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccc-----cccCCCCch-hcccccceeeecchhhhhhcchhhhhhc
Confidence 345666666665433 34567788999999887766 223444444 5678999999999999999999999999
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ 359 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 359 (404)
++-+|+||+|+|..+|.. -+-+|+-|-.|+|+.| .+..+|+.+.+|..|++|.+.++... -..+.+|+++++|.
T Consensus 127 n~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLS 200 (1255)
T ss_pred CcEEEEcccCccccCCch----HHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhh
Confidence 999999999999999875 4668888888888887 78888888888888888866544322 12345566666666
Q ss_pred cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.|.+++.. .....+|.++..+.+|..++++.|+
T Consensus 201 -vLhms~Tq---RTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 201 -VLHMSNTQ---RTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred -hhhccccc---chhhcCCCchhhhhhhhhccccccC
Confidence 66665432 2234455555556666666665554
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=3.1e-12 Score=137.39 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=83.2
Q ss_pred CccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccc
Q 046301 255 LRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 333 (404)
Q Consensus 255 l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L 333 (404)
+++|++|++++|.+. .+|..++.+++|++|++++|.+.. .+|..++++++|++|++++|.....+|..++++++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 455555555555554 556666667777777777766542 223347777777777777775555667777777777
Q ss_pred cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
++|++..+... ...+..+.++++|+ .|++.++. +.+..|..+.++++|+.|+++.|.
T Consensus 215 ~~L~L~~n~l~-~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 215 KWIYLGYNNLS-GEIPYEIGGLTSLN-HLDLVYNN----LTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred cEEECcCCccC-CcCChhHhcCCCCC-EEECcCce----eccccChhHhCCCCCCEEECcCCe
Confidence 77755433221 23445567777777 77776643 233455667788888888887765
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.27 E-value=4.6e-12 Score=136.05 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=49.1
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
+.++++|+.|.+.++. .....+..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+.. .+
T Consensus 160 ~~~l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~ 228 (968)
T PLN00113 160 IGSFSSLKVLDLGGNV-------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG----EI 228 (968)
T ss_pred HhcCCCCCEEECccCc-------ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC----cC
Confidence 4445555555554433 11122333445555555555555543 344555555555555555554431 12
Q ss_pred CccccccccCceeecCCCCccccccccccccccccccCc
Q 046301 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 338 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~ 338 (404)
|..++++++|++|++++|.....+|..++++++|++|.+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 223455555555555554333344444444555554433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.25 E-value=2.1e-13 Score=129.99 Aligned_cols=160 Identities=22% Similarity=0.167 Sum_probs=123.2
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
.++.++.|.+|.+.+..+ .....+..+..+.+|+.+|++.|++..+|..+.++++|+.|+||+|.|+.+.-.
T Consensus 192 QLPsmtsL~vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-- 263 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-- 263 (1255)
T ss_pred cCccchhhhhhhcccccc------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--
Confidence 444555566665555442 222334557889999999999999999999999999999999999999987655
Q ss_pred CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
++...+|++|+++.| .+..+|..+.+|++|+.|...++.......++.+++|.+|. .+...+ +..+..|.
T Consensus 264 ---~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le-vf~aan-----N~LElVPE 333 (1255)
T KOG0444|consen 264 ---EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE-VFHAAN-----NKLELVPE 333 (1255)
T ss_pred ---HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH-HHHhhc-----cccccCch
Confidence 888899999999998 79999999999999999866554444444667788888887 666654 34577778
Q ss_pred cccCccCCCceEEEecCC
Q 046301 380 QLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~~~~ 397 (404)
.++.|..|+.|.|+.|.-
T Consensus 334 glcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhhhHHHHHhcccccce
Confidence 888888888888888763
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.19 E-value=5.4e-12 Score=114.67 Aligned_cols=177 Identities=23% Similarity=0.260 Sum_probs=123.1
Q ss_pred ceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcc
Q 046301 203 RHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLR 282 (404)
Q Consensus 203 r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~ 282 (404)
..+.+..+.+.. .+.++.++.|.-|.+..+. ..-++.+....+..|.+||++.|+++++|.++..|++|.
T Consensus 209 ~~LyL~~Nki~~---lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 209 ELLYLRRNKIRF---LPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred HHHHhhhccccc---CCCCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 334444444433 3455555666555544433 344556666788889999999999999999999899999
Q ss_pred eEecCCCCcccCCCC-----------------------------------------------------------------
Q 046301 283 YLDFSHTAIEVLPES----------------------------------------------------------------- 297 (404)
Q Consensus 283 ~L~l~~~~l~~lp~~----------------------------------------------------------------- 297 (404)
+||+|+|.|+.+|.+
T Consensus 279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred hhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 999999888888876
Q ss_pred -------------------------------------------------------------------CCCccccccccCc
Q 046301 298 -------------------------------------------------------------------KLFPDVGNLVNLR 310 (404)
Q Consensus 298 -------------------------------------------------------------------~~p~~~~~l~~L~ 310 (404)
-+|..++.+++|.
T Consensus 359 ~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 4456677888888
Q ss_pred eeecCCCCccccccccccccccccccCceEecc--------------------CC--cCCccccccccccccceEEcCCC
Q 046301 311 HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK--------------------GN--CYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 311 ~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~--------------------~~--~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
.|++++| .+..+|..++.+..||+|++.++.. ++ ....+.+..|.+|. .|++.+
T Consensus 439 ~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~-tLDL~n-- 514 (565)
T KOG0472|consen 439 FLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT-TLDLQN-- 514 (565)
T ss_pred eeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc-eeccCC--
Confidence 8888877 7888888888888888887765431 11 11122355555665 566544
Q ss_pred CCCCHhHHHhccccCccCCCceEEEecC
Q 046301 369 NVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+++ ..+|..+++|++|+.|.++.|.
T Consensus 515 --Ndl-q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 515 --NDL-QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred --Cch-hhCChhhccccceeEEEecCCc
Confidence 223 5567789999999999998775
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-10 Score=109.96 Aligned_cols=134 Identities=24% Similarity=0.257 Sum_probs=78.7
Q ss_pred hccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGK 329 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~ 329 (404)
+-+++.|+.|++++|.|..+ +.+....+.|+.|||++|+|..++++ .+..|..|++|+|+.| .+..+.++ +..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~----sf~~L~~Le~LnLs~N-si~~l~e~af~~ 363 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG----SFRVLSQLEELNLSHN-SIDHLAEGAFVG 363 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh----HHHHHHHhhhhccccc-chHHHHhhHHHH
Confidence 33556666666666666543 44455556666666666666666654 5666666777777766 55555554 666
Q ss_pred cccccccCceEeccCCc--CCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 330 LTSLRTLAKFVVGKGNC--YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 330 l~~L~~L~~~~~~~~~~--~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+++|++|++..+...-+ ..-..+..|+.|+ +|.+.+.+ +..++ ...+.++..|+.|+|..|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-kL~l~gNq-lk~I~---krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-KLRLTGNQ-LKSIP---KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhh-heeecCce-eeecc---hhhhccCcccceecCCCC
Confidence 67777776543322110 1112355577777 77777643 22222 245777788888888554
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=6.8e-10 Score=92.96 Aligned_cols=101 Identities=26% Similarity=0.351 Sum_probs=21.8
Q ss_pred cccEEEecCCCccccCcccc-cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc-ccccccc
Q 046301 257 QLRVVSLCGYKIVQLPNDIA-ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLR 334 (404)
Q Consensus 257 ~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~ 334 (404)
.++.|+|++|.|+.+. .++ .+.+|+.||+++|.|+.++ ++..+++|++|++++| .+..++.++ ..+++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 4455555555554432 233 3445555555555555443 1444555555555555 444444333 2344555
Q ss_pred ccCceEeccCCcCCccccccccccccceEEcC
Q 046301 335 TLAKFVVGKGNCYGLKELRSLMHLQEKLTISG 366 (404)
Q Consensus 335 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~ 366 (404)
+|.+.++.......+..+..+++|+ .|.+.+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~-~L~L~~ 122 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLR-VLSLEG 122 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT---EEE-TT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcc-eeeccC
Confidence 5533222221222233334444444 444443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.83 E-value=4.7e-10 Score=112.00 Aligned_cols=109 Identities=24% Similarity=0.294 Sum_probs=71.3
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccc
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSL 355 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L 355 (404)
...++|+.|+|++|++..+|.. .+.++..|++|++++| ++..+|..+.++..|++|.. ..+....++++..+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a---hsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA---HSNQLLSFPELAQL 451 (1081)
T ss_pred ccccceeeeeecccccccCCHH----HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh---cCCceeechhhhhc
Confidence 3445666666666666666654 4677777888888887 78888887888888888832 22233344577788
Q ss_pred cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
++|+ .++++... +.. .+++. ....++|+.|++++|..
T Consensus 452 ~qL~-~lDlS~N~-L~~--~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLK-VLDLSCNN-LSE--VTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Ccce-EEecccch-hhh--hhhhh-hCCCcccceeeccCCcc
Confidence 8888 88886432 211 22222 22237999999998874
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.82 E-value=1.6e-10 Score=105.25 Aligned_cols=130 Identities=26% Similarity=0.310 Sum_probs=69.8
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
+..+..|..|+..+|++..+|++++.+..|..|++.+|.++.+| +..-+++.|++|+...| .++.+|+.++.|.
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~-----~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP-----ENHIAMKRLKHLDCNSN-LLETLPPELGGLE 206 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC-----HHHHHHHHHHhcccchh-hhhcCChhhcchh
Confidence 33344444444444444444444444444555555555444444 44555777777777666 6777777777777
Q ss_pred cccccCceEeccCCcCCccccc------------------------cccccccceEEcCCCCCCCHhHHHhccccCccCC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELR------------------------SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKL 387 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~------------------------~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L 387 (404)
+|+-|++..+ ....+++|+ +|.++. .|++.+.+ ....|..+..+++|
T Consensus 207 ~L~~LyL~~N---ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~-vLDLRdNk-----lke~Pde~clLrsL 277 (565)
T KOG0472|consen 207 SLELLYLRRN---KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL-VLDLRDNK-----LKEVPDEICLLRSL 277 (565)
T ss_pred hhHHHHhhhc---ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce-eeeccccc-----cccCchHHHHhhhh
Confidence 7766644322 222223333 344444 55554422 23344556667777
Q ss_pred CceEEEecC
Q 046301 388 EALSLKWVN 396 (404)
Q Consensus 388 ~~L~l~~~~ 396 (404)
+.|+++.|+
T Consensus 278 ~rLDlSNN~ 286 (565)
T KOG0472|consen 278 ERLDLSNND 286 (565)
T ss_pred hhhcccCCc
Confidence 777777665
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.80 E-value=1.7e-09 Score=103.09 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=18.7
Q ss_pred ccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 353 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
-.|+.|+ .|+++. +.+....+..+..+++|+.|+|++|.
T Consensus 290 fgLt~L~-~L~lS~----NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 290 FGLTSLE-QLDLSY----NAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred cccchhh-hhccch----hhhheeecchhhhcccceeEeccccc
Confidence 3444444 444443 22334444445555555555555554
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=1.4e-08 Score=110.41 Aligned_cols=145 Identities=26% Similarity=0.283 Sum_probs=99.9
Q ss_pred CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCC-CcccCCCCCCC
Q 046301 223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHT-AIEVLPESKLF 300 (404)
Q Consensus 223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~-~l~~lp~~~~p 300 (404)
...+|+.|.+..+. . ...+..+..+++|++|+++++. +..+| .++.+++|+.|++++| .+..+|..
T Consensus 609 ~~~~L~~L~L~~s~-------l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s--- 676 (1153)
T PLN03210 609 RPENLVKLQMQGSK-------L-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS--- 676 (1153)
T ss_pred CccCCcEEECcCcc-------c-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh---
Confidence 45667777665543 1 1123346778999999999876 56676 4888999999999998 46666654
Q ss_pred ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccc-ccccccceEEcCCCCCCCHhHHHhc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRS-LMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~-L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
++++++|+.|++++|..+..+|..+ ++++|+.|.+..+ ..+..++. ..+|+ .|.+.++. +.. +|.
T Consensus 677 --i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc-----~~L~~~p~~~~nL~-~L~L~~n~-i~~----lP~ 742 (1153)
T PLN03210 677 --IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC-----SRLKSFPDISTNIS-WLDLDETA-IEE----FPS 742 (1153)
T ss_pred --hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC-----CCccccccccCCcC-eeecCCCc-ccc----ccc
Confidence 9999999999999998899999876 7888998865433 22333332 34677 77776543 222 333
Q ss_pred cccCccCCCceEEEe
Q 046301 380 QLNGKEKLEALSLKW 394 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~ 394 (404)
.+ .+++|+.|++..
T Consensus 743 ~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 743 NL-RLENLDELILCE 756 (1153)
T ss_pred cc-cccccccccccc
Confidence 33 467788887754
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=6.4e-09 Score=98.91 Aligned_cols=152 Identities=24% Similarity=0.291 Sum_probs=117.8
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCc
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFP 301 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~ 301 (404)
..+-.|..+.+..+. ....+..++++..|.+|+|+.|++..+|..++.|+ |+.|-+++|+++.+|+.
T Consensus 95 ~~f~~Le~liLy~n~--------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~---- 161 (722)
T KOG0532|consen 95 CAFVSLESLILYHNC--------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE---- 161 (722)
T ss_pred HHHHHHHHHHHHhcc--------ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc----
Confidence 344555555555543 23345668899999999999999999999999876 99999999999988776
Q ss_pred cccccccCceeecCCCCccccccccccccccccccCceEeccCC-cCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301 302 DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN-CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ 380 (404)
Q Consensus 302 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 380 (404)
|+.++.|.+|+.+.| .+..+|..++.+.+|+.|... .+. ...++++..|+ |. .|+++.++ -..+|..
T Consensus 162 -ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr---Rn~l~~lp~El~~Lp-Li-~lDfScNk-----is~iPv~ 229 (722)
T KOG0532|consen 162 -IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR---RNHLEDLPEELCSLP-LI-RLDFSCNK-----ISYLPVD 229 (722)
T ss_pred -cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh---hhhhhhCCHHHhCCc-ee-eeecccCc-----eeecchh
Confidence 999999999999999 899999999999999999443 222 34667777664 55 67876432 2456778
Q ss_pred ccCccCCCceEEEecCCC
Q 046301 381 LNGKEKLEALSLKWVNST 398 (404)
Q Consensus 381 l~~l~~L~~L~l~~~~~~ 398 (404)
+.+|++|+.|-|..|.-.
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 999999999999888643
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.55 E-value=7.2e-09 Score=103.73 Aligned_cols=135 Identities=22% Similarity=0.341 Sum_probs=102.7
Q ss_pred hhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301 248 VFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR 326 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 326 (404)
....+.++++||+|+|++|.+..+|. .+.+|..|+.|+||+|+++.+|.. +.++..|++|...+| .+..+| +
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t-----va~~~~L~tL~ahsN-~l~~fP-e 447 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT-----VANLGRLHTLRAHSN-QLLSFP-E 447 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH-----HHhhhhhHHHhhcCC-ceeech-h
Confidence 34457889999999999999999985 477899999999999999988876 999999999999988 899999 7
Q ss_pred ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+..++.|+.+++..+..........+++ ++|+ .|++++...... .+ ..+..++++...+++-+
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lk-yLdlSGN~~l~~-d~---~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLK-YLDLSGNTRLVF-DH---KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCC-cccc-eeeccCCccccc-ch---hhhHHhhhhhheecccC
Confidence 9999999999776544333333334444 6888 899988664321 11 22445566666666555
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=7.3e-08 Score=66.25 Aligned_cols=58 Identities=29% Similarity=0.484 Sum_probs=49.5
Q ss_pred ccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 256 RQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
++|++|++++|++..+|+ .+..+++|++|++++|.++.++.. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCC
Confidence 468899999999998875 677899999999999999887754 5889999999999888
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.48 E-value=8.4e-08 Score=99.87 Aligned_cols=158 Identities=23% Similarity=0.279 Sum_probs=108.7
Q ss_pred ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC--ccccCcc-cccCCCcceEecCCC-CcccC
Q 046301 219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK--IVQLPND-IAELKHLRYLDFSHT-AIEVL 294 (404)
Q Consensus 219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-~~~L~~L~~L~l~~~-~l~~l 294 (404)
+...+....|...+..+.- ..... -...+.|++|-+.+|. +..++.. +..++.|++|||++| .+..+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~--------~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKI--------EHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred ccccchhheeEEEEeccch--------hhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3344455666666655441 01111 1233479999999886 6666654 777999999999988 57777
Q ss_pred CCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHh
Q 046301 295 PESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAE 374 (404)
Q Consensus 295 p~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~ 374 (404)
|+. |++|.+||+|+++++ .+..+|.++++|.+|.+|++..++...+. ..-+..|++|+ .|.+..-. ....
T Consensus 588 P~~-----I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr-~L~l~~s~--~~~~ 657 (889)
T KOG4658|consen 588 PSS-----IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR-VLRLPRSA--LSND 657 (889)
T ss_pred ChH-----HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccc-cchhhhccccc-EEEeeccc--cccc
Confidence 765 999999999999999 89999999999999999987655443211 22334478888 77776533 1233
Q ss_pred HHHhccccCccCCCceEEEec
Q 046301 375 DAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~ 395 (404)
......+.++++|+.|+.+..
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hhhHHhhhcccchhhheeecc
Confidence 444455778888888887543
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.8e-07 Score=78.38 Aligned_cols=125 Identities=26% Similarity=0.268 Sum_probs=41.7
Q ss_pred CcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccc-cC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIA-EL 278 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-~L 278 (404)
..+.|.+..+.+..+. .+. .+.+|+.|.+..+. ...+ +.++.++.|+.|++++|.++.+++.+. .+
T Consensus 20 ~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~-------I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQ-------ITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---------S----TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccc---chhhhhcCCCEEECCCCC-------Cccc--cCccChhhhhhcccCCCCCCccccchHHhC
Confidence 3455666665554433 232 35666777766655 1111 235666777777777777776665543 46
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccCceEe
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLAKFVV 341 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~~~~~ 341 (404)
++|+.|++++|+|..+-.- ..+..+++|+.|++.+| .+.+.+. -+..+++|+.|+...+
T Consensus 88 p~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 7777777777776655321 23566777777777776 3444332 2556666777755443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.46 E-value=3.9e-08 Score=89.75 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=57.2
Q ss_pred ccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcc--ccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 303 VGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLK--ELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~--~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
|..|++|++|++++| ++.++-++ |..+..++.|.+- .+....++ .|..|..|+ .|++++.+ +....|.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~---~N~l~~v~~~~f~~ls~L~-tL~L~~N~----it~~~~~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLT---RNKLEFVSSGMFQGLSGLK-TLSLYDNQ----ITTVAPG 340 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcC---cchHHHHHHHhhhccccce-eeeecCCe----eEEEecc
Confidence 667888888888888 67777544 8888888888443 22222222 367778888 88887743 4455566
Q ss_pred cccCccCCCceEEEec
Q 046301 380 QLNGKEKLEALSLKWV 395 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~~ 395 (404)
.+..+.+|.+|+|-.|
T Consensus 341 aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSN 356 (498)
T ss_pred cccccceeeeeehccC
Confidence 7778888888887544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.41 E-value=7.4e-07 Score=91.46 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=60.3
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE 277 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 277 (404)
++..++.+.+..+.+..+.. . ..++|+.|.+..+. ...++. .+. ..|+.|++++|.+..+|..+.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~--~--l~~nL~~L~Ls~N~-------LtsLP~-~l~--~~L~~L~Ls~N~L~~LP~~l~- 261 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPE--N--LQGNIKTLYANSNQ-------LTSIPA-TLP--DTIQEMELSINRITELPERLP- 261 (754)
T ss_pred cccCCcEEEecCCCCCcCCh--h--hccCCCEEECCCCc-------cccCCh-hhh--ccccEEECcCCccCcCChhHh-
Confidence 34567777777766554321 1 12467777776554 112221 121 356777777777777766654
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI 327 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~ 327 (404)
.+|++|++++|++..+|.. +. ++|++|++++| .+..+|..+
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~-----l~--~sL~~L~Ls~N-~Lt~LP~~l 302 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPEN-----LP--EELRYLSVYDN-SIRTLPAHL 302 (754)
T ss_pred -CCCCEEECcCCccCccccc-----cC--CCCcEEECCCC-ccccCcccc
Confidence 4677777777777666543 32 35666677666 555565443
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=5.1e-08 Score=86.02 Aligned_cols=132 Identities=25% Similarity=0.265 Sum_probs=96.7
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
+.-+..|+.|||++|.|+.+-+++.-++.++.|++|+|+|..+- .+..|++|++||+++| .+.++--.--+|-
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGN-LLAECVGWHLKLG 352 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccc-hhHhhhhhHhhhc
Confidence 33467799999999999999999999999999999999998654 2888999999999999 6666643334566
Q ss_pred cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
++++|.+. .+....++.+++|-+|. .|++.+++ +..+ +.. ..+++++.|+.|.|..|.-
T Consensus 353 NIKtL~La---~N~iE~LSGL~KLYSLv-nLDl~~N~-Ie~l-deV-~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 353 NIKTLKLA---QNKIETLSGLRKLYSLV-NLDLSSNQ-IEEL-DEV-NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred CEeeeehh---hhhHhhhhhhHhhhhhe-eccccccc-hhhH-HHh-cccccccHHHHHhhcCCCc
Confidence 67777432 22334556667777777 77776532 1222 222 3589999999999977753
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.38 E-value=2.1e-06 Score=87.87 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=16.4
Q ss_pred HhccccCccCCCceEEEecCCC
Q 046301 377 KEAQLNGKEKLEALSLKWVNST 398 (404)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~ 398 (404)
+|..+.++.+|+.|+|+.|.-+
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cChHHhhccCCCeEECCCCCCC
Confidence 4556778888999999877643
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.36 E-value=7.8e-08 Score=89.89 Aligned_cols=169 Identities=18% Similarity=0.099 Sum_probs=97.3
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccC---ccccEEEecCCCcc-----ccCcccccC-CCcceEecCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL---RQLRVVSLCGYKIV-----QLPNDIAEL-KHLRYLDFSHTA 290 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~-----~lp~~~~~L-~~L~~L~l~~~~ 290 (404)
.+.++++|+.|.+..+.- .......+..+ ++|++|++++|.+. .+...+..+ ++|+.|++++|.
T Consensus 76 ~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 76 GLTKGCGLQELDLSDNAL-------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHhcCceeEEEccCCCC-------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 445677888888866541 11122223333 44888888888775 233455666 788899998888
Q ss_pred cccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceEeccCCc---CCccccccccccccce
Q 046301 291 IEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNC---YGLKELRSLMHLQEKL 362 (404)
Q Consensus 291 l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L~~~L 362 (404)
+..-....++..+..+++|++|++++|. +. .++..+..+++|+.|++..+..... .....+..+++|+ .|
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~-~L 226 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE-VL 226 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC-EE
Confidence 7631111223346667789999998883 33 3444455566888886654432210 1122355667788 88
Q ss_pred EEcCCCCCCCHhHHHh-ccccCccCCCceEEEecCC
Q 046301 363 TISGLENVNDAEDAKE-AQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 363 ~l~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 397 (404)
+++++.-.......+. ........|+.|++++|.-
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 8887542110111111 1111347889999987753
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.35 E-value=1.4e-07 Score=88.08 Aligned_cols=166 Identities=19% Similarity=0.131 Sum_probs=81.1
Q ss_pred CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCcc-----ccCcccccCCCcceEecCCCCcccCCCCC
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESK 298 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~ 298 (404)
+.|+.|.+..+.-. ..........+..+ ++|+.|++++|.+. .++..+..+.+|+.|++++|.+..-....
T Consensus 108 ~~L~~L~ls~~~~~---~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNNNGLG---DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred CcccEEEeeCCccc---hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44666666654310 00111222344555 67777777777765 23444555666777777777665210001
Q ss_pred CCccccccccCceeecCCCCccc-----cccccccccccccccCceEeccCCcCCccccc-----cccccccceEEcCCC
Q 046301 299 LFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELR-----SLMHLQEKLTISGLE 368 (404)
Q Consensus 299 ~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-----~L~~L~~~L~l~~~~ 368 (404)
++..+..+++|++|++++| .+. .++..+..+++|++|++..+.... ..+..+. ..+.|+ .|.+.++.
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~-~L~l~~n~ 261 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLL-TLSLSCND 261 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCce-EEEccCCC
Confidence 2222444557777777766 322 233345556667776554332211 0111111 124566 66666654
Q ss_pred CCCCHhHHHhccccCccCCCceEEEecC
Q 046301 369 NVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
-...-...+...+..+++|+.|+++.|.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 2211223333344555667777776654
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=8.9e-07 Score=90.91 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=21.5
Q ss_pred cccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|+ .|.++++. +..+++.++.....+.++..|++.+|.
T Consensus 390 L~-~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQ-IMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HH-HHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 44 45555432 234455555555566777888887765
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6e-07 Score=56.81 Aligned_cols=40 Identities=25% Similarity=0.500 Sum_probs=31.1
Q ss_pred ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCC
Q 046301 256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLP 295 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp 295 (404)
++|++|++++|+|+.+|+.+++|++|++|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888888888888888888888887654
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.25 E-value=1.1e-07 Score=86.85 Aligned_cols=129 Identities=23% Similarity=0.289 Sum_probs=87.7
Q ss_pred ccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccc
Q 046301 258 LRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT 335 (404)
Q Consensus 258 L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~ 335 (404)
-..++|..|+|+.+|+ .|+.+++||.||||+|.|+.+-+ ..|..+++|..|-+-+++++.++|.+ |++|.+|+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 4667888888888875 46778888888888888886643 36888888888877775588888876 888888888
Q ss_pred cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|.+..+ ...|..-..|..|++++ .|.+++. .+...-...+..+..++.+.+.-|.
T Consensus 145 LllNan-~i~Cir~~al~dL~~l~-lLslyDn----~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNAN-HINCIRQDALRDLPSLS-LLSLYDN----KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChh-hhcchhHHHHHHhhhcc-hhcccch----hhhhhccccccchhccchHhhhcCc
Confidence 744322 22244445577777777 6777652 2223233367777777777765543
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=1.7e-06 Score=88.05 Aligned_cols=79 Identities=29% Similarity=0.440 Sum_probs=50.5
Q ss_pred ccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301 258 LRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336 (404)
Q Consensus 258 L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 336 (404)
++.|+|++|.+. .+|..++.|++|+.|+|++|.+.. .+|..++.+++|+.|++++|.....+|..+++|++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 566667766665 566667777777777777776651 223346677777777777764445666667777777776
Q ss_pred CceE
Q 046301 337 AKFV 340 (404)
Q Consensus 337 ~~~~ 340 (404)
++..
T Consensus 496 ~Ls~ 499 (623)
T PLN03150 496 NLNG 499 (623)
T ss_pred ECcC
Confidence 5543
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=1.9e-06 Score=87.59 Aligned_cols=99 Identities=20% Similarity=0.331 Sum_probs=77.6
Q ss_pred ccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccc
Q 046301 227 LRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN 305 (404)
Q Consensus 227 L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~ 305 (404)
+..|.+..+. ..+..+..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.. .+|..+++
T Consensus 420 v~~L~L~~n~-------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQG-------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG----SIPESLGQ 488 (623)
T ss_pred EEEEECCCCC-------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC----CCchHHhc
Confidence 4555554443 23445566889999999999999997 889999999999999999999873 33445999
Q ss_pred cccCceeecCCCCcccccccccccc-cccccc
Q 046301 306 LVNLRHLKDSHSNLLEEMPLRIGKL-TSLRTL 336 (404)
Q Consensus 306 l~~L~~L~l~~~~~l~~lp~~~~~l-~~L~~L 336 (404)
+++|++|++++|.....+|..++.+ .++..+
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 9999999999997777999887654 234444
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=2.2e-06 Score=58.78 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=50.4
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAI 291 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l 291 (404)
++|+.|.+..+. ...++...|.++++|++|++++|.+..+|+ .+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~-------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467778777765 456667789999999999999999998764 679999999999999975
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=1.8e-06 Score=83.33 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=64.4
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
+..+++|+.|++++|++..+|...+.+++|+.|++++|.+..+|.. +..+..|+++.+++| .....|..+.+++
T Consensus 159 ~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N-~~~~~~~~~~~~~ 232 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNN-SIIELLSSLSNLK 232 (394)
T ss_pred hhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCC-cceecchhhhhcc
Confidence 4555555555555555555555554555555555555555554432 334444555555555 3444444455555
Q ss_pred cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
++..|.+..+.. ...+..+..+..++ .|.++++.. .. ++. +....+|+.|+++.+.
T Consensus 233 ~l~~l~l~~n~~--~~~~~~~~~l~~l~-~L~~s~n~i-~~----i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 233 NLSGLELSNNKL--EDLPESIGNLSNLE-TLDLSNNQI-SS----ISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccCCcee--eeccchhccccccc-eeccccccc-cc----ccc-ccccCccCEEeccCcc
Confidence 555553211111 01133445555555 555554321 11 111 5566777777776654
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.2e-06 Score=81.23 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=40.3
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc--ccccCCCcceEecCCCCcc
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN--DIAELKHLRYLDFSHTAIE 292 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~L~~L~~L~l~~~~l~ 292 (404)
-.+.+++++.|.+..+- .-.-....++...+++|+.|+++.|.+..... .-..+++|+.|.|+.|+++
T Consensus 141 ~~k~~~~v~~LdLS~NL-----~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNL-----FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred hhhhCCcceeecchhhh-----HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 34567777777776654 12223344556677777777777777553221 1234667777777777665
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=2.2e-07 Score=88.74 Aligned_cols=133 Identities=23% Similarity=0.244 Sum_probs=105.3
Q ss_pred hhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301 248 VFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI 327 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~ 327 (404)
++..++.+-.|..+.|+.|.+..+|..+++|..|.+||++.|++..+|.. +..|+ |+.|-++.| +++.+|+.+
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNN-kl~~lp~~i 162 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNN-KLTSLPEEI 162 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecC-ccccCCccc
Confidence 34456777788999999999999999999999999999999999988876 88887 999989887 899999999
Q ss_pred cccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 328 GKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 328 ~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+.+..|..|+...+.. ...+.+++.|.+|+ .|.+.... + .-+|..+..+ .|..|++++|+
T Consensus 163 g~~~tl~~ld~s~nei--~slpsql~~l~slr-~l~vrRn~----l-~~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEI--QSLPSQLGYLTSLR-DLNVRRNH----L-EDLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred ccchhHHHhhhhhhhh--hhchHHhhhHHHHH-HHHHhhhh----h-hhCCHHHhCC-ceeeeecccCc
Confidence 9888899986543322 34567888999998 77776522 2 2334445533 68899999887
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.7e-06 Score=80.21 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCCCcccCCCCCCCc
Q 046301 223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFP 301 (404)
Q Consensus 223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~ 301 (404)
.+++|+.|.+..++ .+..........+++|.+|+|++|. +..--.....+..|+.|||++|++-..+.. .
T Consensus 195 ~l~~lK~L~l~~CG------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~ 265 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG------LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---Y 265 (505)
T ss_pred hhhhhheEEeccCC------CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---c
Confidence 45566666666655 3334444455566666666666663 221112223345566666666665544422 2
Q ss_pred cccccccCceeecCCC
Q 046301 302 DVGNLVNLRHLKDSHS 317 (404)
Q Consensus 302 ~~~~l~~L~~L~l~~~ 317 (404)
.++.++.|+.|+++.|
T Consensus 266 ~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSST 281 (505)
T ss_pred ccccccchhhhhcccc
Confidence 2556666666666655
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.96 E-value=3.1e-05 Score=79.53 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=24.2
Q ss_pred ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCC
Q 046301 256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE 296 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~ 296 (404)
..|+.|++++|.++.+|.. +++|+.|++++|.++.+|.
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCC
Confidence 3456666666666666652 3567777777777776653
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=4.7e-06 Score=84.84 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=29.9
Q ss_pred hccCccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecC
Q 046301 252 VPRLRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDS 315 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~ 315 (404)
-.-+|.|+.|.+.+-.+. ++-.-..++++|+.||+|+++++.+. ++++|++|+.|.+.
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~------GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS------GISRLKNLQVLSMR 203 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH------HHhccccHHHHhcc
Confidence 334555555555554432 22333445555666666666555441 25555555555554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.93 E-value=1.4e-06 Score=77.13 Aligned_cols=81 Identities=27% Similarity=0.371 Sum_probs=45.2
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc--ccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--LRIGK 329 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~ 329 (404)
+..+++|..|||++|.+..+-..-.+|-|.+.|.|.+|.|+.+. +++.|.+|..||+++| .+.++. .+||+
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS------GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS------GLRKLYSLVNLDLSSN-QIEELDEVNHIGN 397 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh------hhHhhhhheecccccc-chhhHHHhccccc
Confidence 44455555555555555554444445555555555555555443 3666666666666666 444443 24666
Q ss_pred cccccccCce
Q 046301 330 LTSLRTLAKF 339 (404)
Q Consensus 330 l~~L~~L~~~ 339 (404)
|+.|++|.+.
T Consensus 398 LPCLE~l~L~ 407 (490)
T KOG1259|consen 398 LPCLETLRLT 407 (490)
T ss_pred ccHHHHHhhc
Confidence 6666666443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.90 E-value=7.4e-06 Score=79.06 Aligned_cols=153 Identities=24% Similarity=0.273 Sum_probs=99.7
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
...+.+..+.+..+. ...+ +.....+ .+|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..
T Consensus 113 ~~~~~l~~L~l~~n~-------i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--- 181 (394)
T COG4886 113 LELTNLTSLDLDNNN-------ITDI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL--- 181 (394)
T ss_pred hcccceeEEecCCcc-------cccC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh---
Confidence 334556666665544 1111 2223344 378888888888888888888888888888888888877754
Q ss_pred ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ 380 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 380 (404)
.+.+++|+.|++++| .+..+|..++.+..|++|.+..+. ....+..+.++.++. .+.+.+... ...+..
T Consensus 182 --~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~-~l~l~~n~~-----~~~~~~ 250 (394)
T COG4886 182 --LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLS-GLELSNNKL-----EDLPES 250 (394)
T ss_pred --hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc--ceecchhhhhccccc-ccccCCcee-----eeccch
Confidence 558888888888888 788888776666678888443221 233445566666666 555433221 111455
Q ss_pred ccCccCCCceEEEecC
Q 046301 381 LNGKEKLEALSLKWVN 396 (404)
Q Consensus 381 l~~l~~L~~L~l~~~~ 396 (404)
+..+.+|+.|+++.|.
T Consensus 251 ~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 251 IGNLSNLETLDLSNNQ 266 (394)
T ss_pred hccccccceecccccc
Confidence 6777778888887665
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=9.1e-06 Score=51.35 Aligned_cols=40 Identities=35% Similarity=0.503 Sum_probs=32.0
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP 324 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp 324 (404)
++|++|++++|+|+.+|.. +++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-----l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-----LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-----GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCch-----HhCCCCCCEEEecCC-CCCCCc
Confidence 4789999999999977654 999999999999999 666665
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=8.7e-06 Score=80.24 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=32.8
Q ss_pred CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 334 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 334 (404)
++.|+.|+|+.|++...- .+..|++|++|||++|.+..+|.- +...+. |+.|.+.+| .+..+- +|.+|.+|+
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L~~L~lrnN-~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-LQLLNLRNN-ALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccccc----chhhhh-heeeeeccc-HHHhhh-hHHhhhhhh
Confidence 344445555555444332 344444455555555544444421 111112 444444444 344442 344444444
Q ss_pred ccCc
Q 046301 335 TLAK 338 (404)
Q Consensus 335 ~L~~ 338 (404)
.|++
T Consensus 258 ~LDl 261 (1096)
T KOG1859|consen 258 GLDL 261 (1096)
T ss_pred ccch
Confidence 4443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=6e-06 Score=81.34 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=91.5
Q ss_pred CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 333 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 333 (404)
...|.+.++++|.+..+-.++.-++.|+.|||++|++.... .+..++.|++|||++| .+..+|.- .... .|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL 234 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccc-hhccccccchhhh-hh
Confidence 34577888899998888888999999999999999988654 3889999999999999 78888853 2222 47
Q ss_pred cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+.|.+. ++.-..+..+.+|.+|+ .|+++.+= +..+.++.| +..+..|..|+|..|.
T Consensus 235 ~~L~lr---nN~l~tL~gie~LksL~-~LDlsyNl-l~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 235 QLLNLR---NNALTTLRGIENLKSLY-GLDLSYNL-LSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeec---ccHHHhhhhHHhhhhhh-ccchhHhh-hhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 777443 33233455667778888 78876521 223334444 4556788888888765
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5.6e-05 Score=77.14 Aligned_cols=108 Identities=24% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCcceEEEEeccCccccccccc-cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGL-HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
.++++|.+.....-...++..+ .-+|.|++|.+.+.. .........+.++++|+.||+++++++.+ .+++.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 4567777655432222222222 347889999887755 22333455677889999999999998877 788899
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
++|+.|.+++-.++.-.. -..+.+|++|+.||+|..
T Consensus 195 knLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhh---HHHHhcccCCCeeecccc
Confidence 999998888766653221 124778899999999876
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00042 Score=65.63 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=34.0
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCC-CcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT-AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR 326 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~-~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 326 (404)
+..+.+++.|++++|.++.+|. + ..+|+.|++++| .++.+|.. +. ++|++|++++|..+..+|.+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-----LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-----IP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-----hh--hhhhheEccCcccccccccc
Confidence 3344566666666666666651 1 124666666654 35544432 21 35566666665555555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.22 E-value=0.00014 Score=70.71 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=61.4
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
+..+..+..+.+..+.- ......+..+.+|++|++++|.|+.+.. +..+..|+.|++++|.|+.+..
T Consensus 91 l~~~~~l~~l~l~~n~i--------~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~---- 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI--------EKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG---- 157 (414)
T ss_pred cccccceeeeeccccch--------hhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC----
Confidence 44555666666655441 1111115567777777777777776543 5566667777777777776653
Q ss_pred ccccccccCceeecCCCCcccccccc-cccccccccc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL 336 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L 336 (404)
+..+++|+.+++++| .+..+... +..+.+|+.+
T Consensus 158 --~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 158 --LESLKSLKLLDLSYN-RIVDIENDELSELISLEEL 191 (414)
T ss_pred --CccchhhhcccCCcc-hhhhhhhhhhhhccchHHH
Confidence 555777777777777 55555432 3556666666
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.11 E-value=0.00015 Score=70.50 Aligned_cols=105 Identities=26% Similarity=0.404 Sum_probs=79.9
Q ss_pred hhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK 329 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 329 (404)
..+..+.+|..|++.+|.|..+...+..+++|++|++++|.|..+.. +..++.|+.|++.+| .+..++ ++..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N-~i~~~~-~~~~ 160 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGN-LISDIS-GLES 160 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc------hhhccchhhheeccC-cchhcc-CCcc
Confidence 34778899999999999999877778889999999999999998763 888888999999999 777775 4666
Q ss_pred cccccccCceEeccCCcCCccc--cccccccccceEEcC
Q 046301 330 LTSLRTLAKFVVGKGNCYGLKE--LRSLMHLQEKLTISG 366 (404)
Q Consensus 330 l~~L~~L~~~~~~~~~~~~~~~--l~~L~~L~~~L~l~~ 366 (404)
+.+|+.+++.++ ....++. +..+.++. .+.+.+
T Consensus 161 l~~L~~l~l~~n---~i~~ie~~~~~~~~~l~-~l~l~~ 195 (414)
T KOG0531|consen 161 LKSLKLLDLSYN---RIVDIENDELSELISLE-ELDLGG 195 (414)
T ss_pred chhhhcccCCcc---hhhhhhhhhhhhccchH-HHhccC
Confidence 888888855433 2333334 45666666 666654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.10 E-value=8.1e-05 Score=58.61 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=38.9
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP 324 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp 324 (404)
-..++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|.. |..|.+|-.|+..+| ....+|
T Consensus 73 t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-----i~~L~~l~~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 73 TIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV-----IAPLIKLDMLDSPEN-ARAEID 139 (177)
T ss_pred hhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHH-----HHHHHhHHHhcCCCC-ccccCc
Confidence 3344456666666666666666666666666666666666554443 555666666665555 444454
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=8.7e-05 Score=58.45 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=67.8
Q ss_pred hccCccccEEEecCCCccccCcccccC-CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAEL-KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL 330 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 330 (404)
+.....|...++++|.+..+|+.+... +-+..|++++|.|..+|.. +..++.|+.|+++.| .+...|.-|..|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N-~l~~~p~vi~~L 122 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFN-PLNAEPRVIAPL 122 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccC-ccccchHHHHHH
Confidence 455677888899999999999888754 4799999999999988875 999999999999998 777888888878
Q ss_pred ccccccC
Q 046301 331 TSLRTLA 337 (404)
Q Consensus 331 ~~L~~L~ 337 (404)
.+|-.|+
T Consensus 123 ~~l~~Ld 129 (177)
T KOG4579|consen 123 IKLDMLD 129 (177)
T ss_pred HhHHHhc
Confidence 8888884
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00024 Score=62.12 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=44.3
Q ss_pred ccCccccEEEecCCCccccCcccccCCCcceEecCCC--CcccCCCCCCCccccccccCceeecCCCCcccccccc---c
Q 046301 253 PRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT--AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR---I 327 (404)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~--~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~---~ 327 (404)
..+..|..|++.+..++.+ ..+..|++|++|+++.| ++.. .++.....+++|++|++++| ++.. +.+ +
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl 112 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPL 112 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccc----cceehhhhCCceeEEeecCC-cccc-ccccchh
Confidence 3445555555555544422 22445778888888887 4331 12222555688888888887 4443 222 3
Q ss_pred cccccccccCceEe
Q 046301 328 GKLTSLRTLAKFVV 341 (404)
Q Consensus 328 ~~l~~L~~L~~~~~ 341 (404)
.++.+|..|+++++
T Consensus 113 ~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 113 KELENLKSLDLFNC 126 (260)
T ss_pred hhhcchhhhhcccC
Confidence 44444555555444
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.66 E-value=0.0013 Score=55.35 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=70.3
Q ss_pred ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccc-cccCceeecCCCCccccccc--ccccccc
Q 046301 256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN-LVNLRHLKDSHSNLLEEMPL--RIGKLTS 332 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~-l~~L~~L~l~~~~~l~~lp~--~~~~l~~ 332 (404)
.+.-.+||++|.+..++ .+..++.|.+|.+.+|+|..+-+. +.. +++|+.|.+.+| .+.++-+ .+..+++
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~-----L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPD-----LDTFLPNLKTLILTNN-SIQELGDLDPLASCPK 114 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccc-----hhhhccccceEEecCc-chhhhhhcchhccCCc
Confidence 35678899999876543 356788899999999999977654 655 477999999988 5555532 2556667
Q ss_pred ccccCceEeccC--CcCCccccccccccccceEEcCC
Q 046301 333 LRTLAKFVVGKG--NCYGLKELRSLMHLQEKLTISGL 367 (404)
Q Consensus 333 L~~L~~~~~~~~--~~~~~~~l~~L~~L~~~L~l~~~ 367 (404)
|++|.+..+... .....--+..+++|+ .|+..+.
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~-~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLR-TLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcce-Eeehhhh
Confidence 777755433322 123344567777777 7777654
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0013 Score=57.58 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=52.7
Q ss_pred hccCccccEEEecCC--Ccc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc---
Q 046301 252 VPRLRQLRVVSLCGY--KIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL--- 325 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~--~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--- 325 (404)
|+.|++|+.|.++.| .+. .++.-...+++|++|++++|+|+.+.. + +.+..+.+|..|++..|. ...+-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst--l-~pl~~l~nL~~Ldl~n~~-~~~l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST--L-RPLKELENLKSLDLFNCS-VTNLDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc--c-chhhhhcchhhhhcccCC-ccccccHHH
Confidence 566677777777777 333 455555556777777777777664221 1 125567777777777773 322321
Q ss_pred -cccccccccccCceEec
Q 046301 326 -RIGKLTSLRTLAKFVVG 342 (404)
Q Consensus 326 -~~~~l~~L~~L~~~~~~ 342 (404)
.+.-+++|.+|+.+.+.
T Consensus 137 ~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHHhhhhccccccccC
Confidence 14556777777776654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.45 E-value=0.0031 Score=53.23 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=69.1
Q ss_pred hhhccCccccEEEecCCCccccCccccc-CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc---
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQLPNDIAE-LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL--- 325 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~-L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--- 325 (404)
+.|+.++.|..|.+..|.|+.+-+.+.. +++|..|.|.+|+|..+-+- ..+..+|.|++|.+-+| .....+.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~N-pv~~k~~YR~ 133 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGN-PVEHKKNYRL 133 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc---chhccCCccceeeecCC-chhcccCcee
Confidence 4588999999999999999998777765 56799999999988766432 22667889999999888 4444432
Q ss_pred -cccccccccccCceEec
Q 046301 326 -RIGKLTSLRTLAKFVVG 342 (404)
Q Consensus 326 -~~~~l~~L~~L~~~~~~ 342 (404)
-+.++++|++|+...+.
T Consensus 134 yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEEEecCcceEeehhhhh
Confidence 27889999999766554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.43 E-value=0.0072 Score=57.46 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=17.6
Q ss_pred ccccEEEecCC-CccccCcccccCCCcceEecCCCC
Q 046301 256 RQLRVVSLCGY-KIVQLPNDIAELKHLRYLDFSHTA 290 (404)
Q Consensus 256 ~~L~~L~l~~~-~~~~lp~~~~~L~~L~~L~l~~~~ 290 (404)
.+|++|.+++| .+..+|.. |+.|+++.+.
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~ 123 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLPES------VRSLEIKGSA 123 (426)
T ss_pred hhhhheEccCcccccccccc------cceEEeCCCC
Confidence 46777777777 45566643 4555555543
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0029 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=9.4
Q ss_pred ccEEEecCCCccccCcccc
Q 046301 258 LRVVSLCGYKIVQLPNDIA 276 (404)
Q Consensus 258 L~~L~l~~~~~~~lp~~~~ 276 (404)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.99 E-value=0.0024 Score=58.21 Aligned_cols=175 Identities=15% Similarity=0.030 Sum_probs=101.7
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc--------------CcccccCCCcceEe
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL--------------PNDIAELKHLRYLD 285 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--------------p~~~~~L~~L~~L~ 285 (404)
.+..+++|+.+.+..+.-.. .........+.++..|+.|.|.+|.+... ...+++-+.||++.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~---~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGP---KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHhcCCceeEeeccccccCc---cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 45566788888887765100 01122334566778888888888765421 12344556788888
Q ss_pred cCCCCcccCCCCCCCccccccccCceeecCCCCcc----ccccccccccccccccCceEeccCC--cCC-cccccccccc
Q 046301 286 FSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLL----EEMPLRIGKLTSLRTLAKFVVGKGN--CYG-LKELRSLMHL 358 (404)
Q Consensus 286 l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~~~~~~~~~--~~~-~~~l~~L~~L 358 (404)
...|++..-+...+-..+...+.|+.+.+..|..- .-+-.++..++.|++|++.++.... +.. -..++.+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 88887775544333334556678888888777211 1122345677888888776554322 112 2346777778
Q ss_pred ccceEEcCCCCCCCHhHHH-hccccCccCCCceEEEecCCC
Q 046301 359 QEKLTISGLENVNDAEDAK-EAQLNGKEKLEALSLKWVNST 398 (404)
Q Consensus 359 ~~~L~l~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 398 (404)
+ .+.+.+|---+.-..++ .+.-...++|+.|.+.+|..+
T Consensus 244 ~-El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 244 R-ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred e-eecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 8 78887774222212222 222233578888888887643
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.96 E-value=0.0015 Score=59.47 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCCCC
Q 046301 223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLPES 297 (404)
Q Consensus 223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp~~ 297 (404)
+-+.||++....+. ............|...+.|+.+.++.|.|.. +-..+..+++|+.|||+.|.++.--..
T Consensus 155 ~~~~Lrv~i~~rNr---len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNR---LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CCcceEEEEeeccc---cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 44556666554432 2223344455667777888888888887641 234567788888888888866532211
Q ss_pred CCCccccccccCceeecCCC
Q 046301 298 KLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 298 ~~p~~~~~l~~L~~L~l~~~ 317 (404)
.+-..+..+++|+.|++++|
T Consensus 232 ~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHhcccchheeeccccc
Confidence 22233667778888888888
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.68 E-value=0.13 Score=55.30 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=94.1
Q ss_pred CCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccc-cchhH
Q 046301 5 NLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAE-DRSSI 83 (404)
Q Consensus 5 ~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~i 83 (404)
+|+.+|+.++|....- .. . . .+.+.++.+.|+|.|+++..++..+....... ...... ... ....+
T Consensus 185 ~f~~~e~~~ll~~~~~-~~-~-~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~----~~~~~~~~~ 251 (903)
T PRK04841 185 AFDHQEAQQFFDQRLS-SP-I-E----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARR----LAGINASHL 251 (903)
T ss_pred CCCHHHHHHHHHhccC-CC-C-C----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHh----hcCCCchhH
Confidence 8899999999987651 11 1 1 25678999999999999999998876542111 011111 111 12345
Q ss_pred HHHHHH-HHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCccc-ccCC
Q 046301 84 MGALRV-SYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW-SKID 161 (404)
Q Consensus 84 ~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~-~~~~ 161 (404)
.+.+.- -++.||+..+..++..|+++ .++. .+... +... ..+...+..|.+.+++.. .+.+
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~ 314 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDS 314 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCC
Confidence 554443 47899999999999999986 2332 22221 1111 224667999999999653 3334
Q ss_pred CceEEechHHHHHHHhhh
Q 046301 162 ASRFLMHDLIHDLACWAF 179 (404)
Q Consensus 162 ~~~~~mhdli~~~~~~i~ 179 (404)
...++.|++++++.....
T Consensus 315 ~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCEEehhHHHHHHHHHHH
Confidence 456888999999987664
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.00072 Score=59.73 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=67.8
Q ss_pred CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.+++.|.+.+++ ... -.+...|+.|++|.|+-|+|+.+.+ +..+++|+.|+|+.|.|..+.+- ..+
T Consensus 18 l~~vkKLNcwg~~-------L~D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL---~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-------LDD--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDEL---EYL 84 (388)
T ss_pred HHHhhhhcccCCC-------ccH--HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHH---HHH
Confidence 4455555555554 111 2346788999999999999887644 67788899999999988766542 346
Q ss_pred cccccCceeecCCCCcccccccc-----ccccccccccC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-----IGKLTSLRTLA 337 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-----~~~l~~L~~L~ 337 (404)
.++++|+.|-|..|.=...-+.. +.-|++|+.|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 78888898888877444433322 44456666664
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0069 Score=54.22 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=45.3
Q ss_pred CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCCCcc
Q 046301 224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPD 302 (404)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~ 302 (404)
.+.++-+.+..+.- ..-.....++.+|+.|++|+++.|++...-... ..+++|++|-|.++.+.-- +....
T Consensus 70 ~~~v~elDL~~N~i-----SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~---~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI-----SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT---QSTSS 141 (418)
T ss_pred hhhhhhhhcccchh-----ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh---hhhhh
Confidence 45555565555441 111223445677777778887777754322222 3456777777776654311 11112
Q ss_pred ccccccCceeecCCC
Q 046301 303 VGNLVNLRHLKDSHS 317 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~ 317 (404)
+..+|.++.|+++.|
T Consensus 142 l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN 156 (418)
T ss_pred hhcchhhhhhhhccc
Confidence 555666666666555
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0005 Score=61.29 Aligned_cols=65 Identities=26% Similarity=0.081 Sum_probs=38.9
Q ss_pred cccccCceeecCCCCcccc-ccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCC
Q 046301 304 GNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLEN 369 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~ 369 (404)
...++|.+|||++|..++. .-..+-++..|++|.+..+.......+-++.+.+.|. .|++.+|-.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~-yLdv~g~vs 375 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV-YLDVFGCVS 375 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE-EEEeccccC
Confidence 3567788888887744442 1123566777777765544333333445566777777 777776643
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0075 Score=31.63 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=7.2
Q ss_pred cceEecCCCCcccCC
Q 046301 281 LRYLDFSHTAIEVLP 295 (404)
Q Consensus 281 L~~L~l~~~~l~~lp 295 (404)
|++||+++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 445555555444443
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.0011 Score=59.23 Aligned_cols=180 Identities=16% Similarity=0.062 Sum_probs=94.5
Q ss_pred cceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc--CcccccC
Q 046301 202 LRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL--PNDIAEL 278 (404)
Q Consensus 202 ~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l--p~~~~~L 278 (404)
+.++.+....+....-..-++.+.+|+.|.+.+.. ........+..-.+|+.|++++++ +++. ---+.++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 44555544444332222234456666666665543 223333445666777777777665 4422 2234556
Q ss_pred CCcceEecCCCCcccCCCCCCCcccccc-ccCceeecCCCCccccc---cccccccccccccCceEeccCCcCCcccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNL-VNLRHLKDSHSNLLEEM---PLRIGKLTSLRTLAKFVVGKGNCYGLKELRS 354 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l-~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 354 (404)
+.|..|++++|.+..=- ..-.+.+. ++|+.|++++|...-.. ..-..+.++|..|++.++......-+.++-+
T Consensus 260 s~L~~LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhHhhcCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 66777777777543100 00112221 45677777776321111 1113456677777776554433344556677
Q ss_pred ccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 355 LMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+..|+ .|.++.|-.+. ++ .-..+..+++|.+|++..+
T Consensus 337 f~~L~-~lSlsRCY~i~--p~-~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQ-HLSLSRCYDII--PE-TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchhe-eeehhhhcCCC--hH-HeeeeccCcceEEEEeccc
Confidence 77777 77777766432 22 2234667778888877544
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.02 E-value=0.013 Score=28.51 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=4.4
Q ss_pred cceEecCCCCccc
Q 046301 281 LRYLDFSHTAIEV 293 (404)
Q Consensus 281 L~~L~l~~~~l~~ 293 (404)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0023 Score=56.60 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=60.5
Q ss_pred cCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc--ccccc
Q 046301 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR--IGKLT 331 (404)
Q Consensus 254 ~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~ 331 (404)
.+.+.+-|++.|+.+..+.- +.+++.|++|.|+-|+|+.+.. +..+++|++|+|..| .+..+-+- +.+|+
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 35677888999999876532 4578999999999999998763 889999999999988 45555432 66778
Q ss_pred cccccCce
Q 046301 332 SLRTLAKF 339 (404)
Q Consensus 332 ~L~~L~~~ 339 (404)
+|++|=+-
T Consensus 89 sLr~LWL~ 96 (388)
T KOG2123|consen 89 SLRTLWLD 96 (388)
T ss_pred hhhhHhhc
Confidence 88887443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.08 E-value=0.035 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=11.3
Q ss_pred ccccEEEecCCCccccC
Q 046301 256 RQLRVVSLCGYKIVQLP 272 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp 272 (404)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46899999999998876
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.96 E-value=0.12 Score=28.18 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=10.5
Q ss_pred CCcceEecCCCCcccCCC
Q 046301 279 KHLRYLDFSHTAIEVLPE 296 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~ 296 (404)
++|++|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.96 E-value=0.12 Score=28.18 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=10.5
Q ss_pred CCcceEecCCCCcccCCC
Q 046301 279 KHLRYLDFSHTAIEVLPE 296 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~ 296 (404)
++|++|+|++|.|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.91 E-value=0.0076 Score=52.06 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=42.4
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCC
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSN 318 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~ 318 (404)
|..+..|..|+++.|.+..+|..++.+..++.+++..|..+..|.+ ++.++.++++++.++.
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s-----~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS-----QKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc-----ccccCCcchhhhccCc
Confidence 4445566666777777777777777777777777777777766654 7777777777776663
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=0.13 Score=46.44 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=54.6
Q ss_pred hhhccCccccEEEecCCCccc---cCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCc-cccccc
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQ---LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL-LEEMPL 325 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~---lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~-l~~lp~ 325 (404)
.+=.....++.|||.+|.|.. +-.-+.+|++|++|+++.|.+..--. .+| -.+.+|+.|-|.++.. ....-.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp---~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLP---LPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCc---ccccceEEEEEcCCCCChhhhhh
Confidence 333567889999999999874 44456789999999999998763211 122 2456889999988732 112222
Q ss_pred cccccccccccC
Q 046301 326 RIGKLTSLRTLA 337 (404)
Q Consensus 326 ~~~~l~~L~~L~ 337 (404)
.+..++.++.|.
T Consensus 141 ~l~~lP~vtelH 152 (418)
T KOG2982|consen 141 SLDDLPKVTELH 152 (418)
T ss_pred hhhcchhhhhhh
Confidence 344555555553
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.49 E-value=0.18 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.8
Q ss_pred CccccEEEecCCCccccCcccc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIA 276 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~ 276 (404)
+++|++|++++|.+..+|+...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4679999999999999998653
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.49 E-value=0.18 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.8
Q ss_pred CccccEEEecCCCccccCcccc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIA 276 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~ 276 (404)
+++|++|++++|.+..+|+...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4679999999999999998653
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.35 E-value=0.83 Score=35.90 Aligned_cols=78 Identities=12% Similarity=0.240 Sum_probs=30.5
Q ss_pred hhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cc
Q 046301 251 VVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG 328 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~ 328 (404)
.|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..++.. .+.++++|+.+.+.. .+..++.. +.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee----eeecccccccccccc--ccccccccccc
Confidence 355555555555553 3444432 2444445666665553 4444432 355555566666643 23333332 44
Q ss_pred cccccccc
Q 046301 329 KLTSLRTL 336 (404)
Q Consensus 329 ~l~~L~~L 336 (404)
..++|+.+
T Consensus 79 ~~~~l~~i 86 (129)
T PF13306_consen 79 NCTNLKNI 86 (129)
T ss_dssp T-TTECEE
T ss_pred cccccccc
Confidence 45555544
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.86 E-value=0.65 Score=41.48 Aligned_cols=46 Identities=11% Similarity=-0.078 Sum_probs=20.0
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI 268 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 268 (404)
.+-+|++++...+..+.-. ........+.+.+-..|..|.+++|.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg---~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFG---SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccC---cccchHHHHHHhcCCCceeEEeecCCC
Confidence 3445555555555544300 000111223444555555555555543
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.38 E-value=2.3 Score=33.28 Aligned_cols=98 Identities=10% Similarity=0.211 Sum_probs=45.7
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
.+++.|+.+.+... ...+....|.++..|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++..
T Consensus 9 ~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~--- 75 (129)
T PF13306_consen 9 YNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN--- 75 (129)
T ss_dssp TT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT---
T ss_pred hCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc---
Confidence 34455555554321 22344455777777777777664 555543 345555677777755 44444432
Q ss_pred ccccccccCceeecCCCCcccccccc-cccccccccc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL 336 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L 336 (404)
.+..+++|+.+.+..+ +..++.. +.+. +|+.+
T Consensus 76 -~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 76 -AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp -TTTT-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred -cccccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 3556777777777653 4555543 5554 55555
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.73 E-value=0.75 Score=25.06 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=11.4
Q ss_pred CcceEecCCCCcccCCC
Q 046301 280 HLRYLDFSHTAIEVLPE 296 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~ 296 (404)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777776664
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.65 E-value=0.65 Score=41.50 Aligned_cols=167 Identities=20% Similarity=0.156 Sum_probs=91.1
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc----cccC-------cccccCCCcceEecCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI----VQLP-------NDIAELKHLRYLDFSH 288 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~lp-------~~~~~L~~L~~L~l~~ 288 (404)
.+.-+..+.-+.+.++. ...-........+.+-++|++.+++..-. .++| +.+-++++|+..+||.
T Consensus 25 el~~~d~~~evdLSGNt---igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 25 ELEMMDELVEVDLSGNT---IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHhhcceeEEeccCCc---ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 33446677777776654 11112233445566778888888875421 1333 4456788999999999
Q ss_pred CCcc-cCCCCCCCccccccccCceeecCCCCcccccccc-cc-------------ccccccccCceEeccCC---cCC--
Q 046301 289 TAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG-------------KLTSLRTLAKFVVGKGN---CYG-- 348 (404)
Q Consensus 289 ~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~-------------~l~~L~~L~~~~~~~~~---~~~-- 348 (404)
|-+. ..|+ .+-..|++-+.|.+|.+++| .++-+--+ |+ +-+.|++. .++.+. ++.
T Consensus 102 NAfg~~~~e-~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~v---icgrNRlengs~~~ 176 (388)
T COG5238 102 NAFGSEFPE-ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVV---ICGRNRLENGSKEL 176 (388)
T ss_pred cccCcccch-HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEE---EeccchhccCcHHH
Confidence 9654 2222 22234667788999999988 33332211 22 22334443 333322 111
Q ss_pred -ccccccccccccceEEcCCCCCCC--HhHHHhccccCccCCCceEEEecC
Q 046301 349 -LKELRSLMHLQEKLTISGLENVND--AEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 349 -~~~l~~L~~L~~~L~l~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
-..|.+-..|+ .+.+..+. +.. ...+.-..+..+++|+.|+|+-|.
T Consensus 177 ~a~~l~sh~~lk-~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 177 SAALLESHENLK-EVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHHHHhhcCce-eEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 01133334555 66665432 121 233344456678899999998664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.46 E-value=0.066 Score=46.45 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=37.0
Q ss_pred CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 334 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 334 (404)
...-++||++.|.+..+-..++.+..|..||++.|.+..+|.. ++++..++++++..| .....|.+++.++.++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 3444455555555444444444555555555555555544432 555555555544444 4445555555554444
Q ss_pred cc
Q 046301 335 TL 336 (404)
Q Consensus 335 ~L 336 (404)
.+
T Consensus 115 ~~ 116 (326)
T KOG0473|consen 115 KN 116 (326)
T ss_pred hh
Confidence 44
No 80
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=80.60 E-value=5.9 Score=35.70 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=40.3
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHh
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLL 56 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L 56 (404)
+++++++.+|..+++...+-.........--.+..+.|++.|+|.|..|..++..+
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 36899999999998887653211100111124788999999999999999988866
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.98 E-value=1.7 Score=23.68 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=10.1
Q ss_pred CCCcceEecCCCCccc
Q 046301 278 LKHLRYLDFSHTAIEV 293 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~ 293 (404)
|.+|+.|++++|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3566667777766654
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.12 E-value=0.37 Score=40.98 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=36.4
Q ss_pred cccEEEecCCCccc-cCcccccCCCcceEecCCCC-cccCCCCCCCcccc-ccccCceeecCCCCccccccc-ccccccc
Q 046301 257 QLRVVSLCGYKIVQ-LPNDIAELKHLRYLDFSHTA-IEVLPESKLFPDVG-NLVNLRHLKDSHSNLLEEMPL-RIGKLTS 332 (404)
Q Consensus 257 ~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~~~-l~~lp~~~~p~~~~-~l~~L~~L~l~~~~~l~~lp~-~~~~l~~ 332 (404)
.++.++.+++.|.. =-..+..++.++.|.+.+|. +..-- + ..++ -.++|+.|++++|..+++--- .+.++++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~---L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC---L-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH---H-HHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 35677777776652 12334445555555555552 22100 0 0122 236667777776654443321 1444455
Q ss_pred ccccCc
Q 046301 333 LRTLAK 338 (404)
Q Consensus 333 L~~L~~ 338 (404)
|+.|.+
T Consensus 178 Lr~L~l 183 (221)
T KOG3864|consen 178 LRRLHL 183 (221)
T ss_pred hHHHHh
Confidence 555533
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=75.81 E-value=1.3 Score=41.90 Aligned_cols=133 Identities=18% Similarity=0.135 Sum_probs=60.0
Q ss_pred ccCccccEEEecCCC-cccc--CcccccCCCcceEecCCCCc-ccCCCCCCCccccccccCceeecCCCCccccc-----
Q 046301 253 PRLRQLRVVSLCGYK-IVQL--PNDIAELKHLRYLDFSHTAI-EVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM----- 323 (404)
Q Consensus 253 ~~l~~L~~L~l~~~~-~~~l--p~~~~~L~~L~~L~l~~~~l-~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l----- 323 (404)
.+..+|++|.+++++ |+.. -.--.+.++|+.+++..+.. ..- ++-.--.+.+.||.|.++.|..+...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---TLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh---hHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 355677777777766 3211 11112345677777766632 211 01111335666777777766433322
Q ss_pred cccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceE
Q 046301 324 PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALS 391 (404)
Q Consensus 324 p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 391 (404)
-..-..+..|+.|.+.+........++.+.+..+|+ .+.+.++.++.. +++...-.++++++..-
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le-ri~l~~~q~vtk--~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE-RIELIDCQDVTK--EAISRFATHLPNIKVHA 458 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccc-eeeeechhhhhh--hhhHHHHhhCccceehh
Confidence 111222333444433222211122233344555666 666666665432 33333334445554433
No 84
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=75.17 E-value=15 Score=34.34 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=71.8
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccch
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRS 81 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~ 81 (404)
++++++.++..+++.+.+-..+. ..+ .+.+..|++.|+|.|-.+..+...+. .|...... ..-....-.
T Consensus 176 ~l~~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~-~~I~~~~v~ 244 (328)
T PRK00080 176 RLEFYTVEELEKIVKRSARILGV-EID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD-GVITKEIAD 244 (328)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC-CCCCHHHHH
Confidence 57899999999999988743322 222 36789999999999954444433221 12111100 000001112
Q ss_pred hHHHHHHHHHhcCChhhhhhhh-hcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHH-HHhhCCCccc
Q 046301 82 SIMGALRVSYHYLPSYVKRCFA-YCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQ-VLHSRSFFQW 157 (404)
Q Consensus 82 ~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~sli~~ 157 (404)
...+.+...|..|++..+..+. ....|..+ .+..+.+... +... ...++..++ .|++.++|+.
T Consensus 245 ~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~------lg~~------~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 245 KALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA------LGEE------RDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH------HCCC------cchHHHHhhHHHHHcCCccc
Confidence 3334455667778877777664 44555544 3444433221 1111 133444555 8888888864
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.10 E-value=16 Score=33.73 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=71.5
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHH-hhhhhhccccc
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVL-TSKIWDLAEDR 80 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l-~~~~~~~~~~~ 80 (404)
++++++.+|..+++.+.+-... ...+ .+.+..+++.|+|.|-.+..++..+ |..+. .....-..+..
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~-~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v 222 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLN-VEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIA 222 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhC-CCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHH
Confidence 5789999999999998874322 2222 3667889999999997665555533 21110 00000000111
Q ss_pred hhHHHHHHHHHhcCChhhhhhhh-hcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHH-HHhhCCCccc
Q 046301 81 SSIMGALRVSYHYLPSYVKRCFA-YCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQ-VLHSRSFFQW 157 (404)
Q Consensus 81 ~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~sli~~ 157 (404)
......+...|..++...+..+. .++.+..+ .++.+++... .... ...+...++ .|+++++|+.
T Consensus 223 ~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~------lg~~------~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 223 LKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA------LGED------ADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH------hCCC------cchHHHhhhHHHHHcCCccc
Confidence 22233345567788887777665 33555333 3333332221 1111 133455567 6999999974
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=74.23 E-value=1.1 Score=44.19 Aligned_cols=138 Identities=24% Similarity=0.250 Sum_probs=76.1
Q ss_pred hhccCccccEEEecCCC-ccc--cCcccccCCCcceEecCCC--CcccCCCCCCCccccccccCceeecCCCCcccccc-
Q 046301 251 VVPRLRQLRVVSLCGYK-IVQ--LPNDIAELKHLRYLDFSHT--AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP- 324 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~-~~~--lp~~~~~L~~L~~L~l~~~--~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp- 324 (404)
....++.|+.|.+.++. +.. +-+.....++|+.|+++++ .+...+. ..+.....+.+|+.|+++.+..+...-
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCchhH
Confidence 34457888888888775 443 3355667889999999873 2222221 112234556889999998884333221
Q ss_pred cccc-ccccccccCceEeccCCcCCccc-cccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301 325 LRIG-KLTSLRTLAKFVVGKGNCYGLKE-LRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL 392 (404)
Q Consensus 325 ~~~~-~l~~L~~L~~~~~~~~~~~~~~~-l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 392 (404)
..+. .+++|++|.+..+.......+.. ...+++|+ .|.++.|..+++ ..+.....++++|+.|.+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~-~L~l~~c~~~~d--~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLR-ELDLSGCHGLTD--SGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCccc-EEeeecCccchH--HHHHHHHHhCcchhhhhh
Confidence 1122 25577777422221111112222 23456688 888888877532 223333555666666554
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=71.36 E-value=0.79 Score=45.14 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=66.1
Q ss_pred CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCC-C-ccc----cCcccccCCCcceEecCCCC-cccCCC
Q 046301 224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGY-K-IVQ----LPNDIAELKHLRYLDFSHTA-IEVLPE 296 (404)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~-~~~----lp~~~~~L~~L~~L~l~~~~-l~~lp~ 296 (404)
.+.|+.+.+..+.. ............+++|+.|+++++ . +.. .+.....+++|+.|+++++. +...-
T Consensus 187 ~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~- 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG- 260 (482)
T ss_pred CchhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-
Confidence 56777776665541 112124456778899999999873 2 121 12334456889999999886 54321
Q ss_pred CCCCccccccccCceeecCCCCcccc--ccccccccccccccCceEecc
Q 046301 297 SKLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGK 343 (404)
Q Consensus 297 ~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~ 343 (404)
+-.-...+++|++|.+..|..+.. +-.....+++|+.|++..+..
T Consensus 261 --l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 --LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred --HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 001112377999999888854321 212244567799987764433
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.62 E-value=2.7 Score=22.08 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=5.3
Q ss_pred CCcceEecCCCCc
Q 046301 279 KHLRYLDFSHTAI 291 (404)
Q Consensus 279 ~~L~~L~l~~~~l 291 (404)
++|+.|++++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3445555555544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.93 E-value=7.9 Score=21.35 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=8.8
Q ss_pred CCcceEecCCCCcc
Q 046301 279 KHLRYLDFSHTAIE 292 (404)
Q Consensus 279 ~~L~~L~l~~~~l~ 292 (404)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777766654
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.77 E-value=1.6 Score=37.31 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-cccc-ccccccccCceEeccCCcCCcccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIG-KLTSLRTLAKFVVGKGNCYGLKELRSLM 356 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 356 (404)
..++.+|.+++.|...- -..+.+++.++.|.+..|..+..-= ..++ -.++|+.|++..+.......+.-|.+++
T Consensus 101 ~~IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred ceEEEEecCCchHHHHH----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 45889999998765311 0125566777777777774432111 0122 2368999977655554445566688899
Q ss_pred ccccceEEcCCCCCCCHh
Q 046301 357 HLQEKLTISGLENVNDAE 374 (404)
Q Consensus 357 ~L~~~L~l~~~~~~~~~~ 374 (404)
+|+ .|.+.++..+.+..
T Consensus 177 nLr-~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 177 NLR-RLHLYDLPYVANLE 193 (221)
T ss_pred hhH-HHHhcCchhhhchH
Confidence 999 99998887765543
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.61 E-value=8.8 Score=20.61 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=8.9
Q ss_pred ccCceeecCCCCcc
Q 046301 307 VNLRHLKDSHSNLL 320 (404)
Q Consensus 307 ~~L~~L~l~~~~~l 320 (404)
++|++|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 56777777777433
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=52.05 E-value=1.6 Score=41.34 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=19.8
Q ss_pred CcceEecCCCC-cccCCCCCCCccccccccCceeecCCCC
Q 046301 280 HLRYLDFSHTA-IEVLPESKLFPDVGNLVNLRHLKDSHSN 318 (404)
Q Consensus 280 ~L~~L~l~~~~-l~~lp~~~~p~~~~~l~~L~~L~l~~~~ 318 (404)
.|+.|.++++. +..-+ +-....+.+++++|.+.+|.
T Consensus 139 ~lk~LSlrG~r~v~~ss---lrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS---LRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcch---hhHHhhhCCchhhhhhhcce
Confidence 46777777763 22111 11124566777777777774
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=40.55 E-value=2.8e+02 Score=26.40 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=76.1
Q ss_pred CCCCCChhhHHHHHHHcc---cCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHh--hc---C--CChhHHHHHHhh
Q 046301 2 SLRNLLRDDCLCIFVQHS---LGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLL--RD---K--YDPKDWEDVLTS 71 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L--~~---~--~~~~~w~~~l~~ 71 (404)
.+++++.++..+++...+ |.... ..+..++.+++.+....|..+.|+.++-.+. +. + -+.+..+.+++.
T Consensus 203 ~f~py~~~e~~~il~~r~~~~~~~~~-~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 203 YFPPYTADEIFDILKDRVEEGFYPGV-VDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcccCC-CCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 467889999999988765 32221 2334445555555555677888887765432 11 1 134444444443
Q ss_pred hhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCC--CceeChhHHHHH--HHHCCCcccCCCCCcHHHHHHHHHH
Q 046301 72 KIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPK--GYRFDERQIVLL--WMAEGLLQHETYGKQMEELGRKSFQ 147 (404)
Q Consensus 72 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~li~~--w~~~g~~~~~~~~~~~~~~~~~~~~ 147 (404)
. -.....-.+..||...|..+..++..-+ ...+...++... .+++.+-.. .-.......+++
T Consensus 282 ~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~----~~~~~~~~~~l~ 347 (394)
T PRK00411 282 S----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE----PRTHTRFYEYIN 347 (394)
T ss_pred H----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC----cCcHHHHHHHHH
Confidence 2 1223445678898888876655553321 123444444432 222211110 001133456889
Q ss_pred HHhhCCCccc
Q 046301 148 VLHSRSFFQW 157 (404)
Q Consensus 148 ~L~~~sli~~ 157 (404)
.|.+.++|..
T Consensus 348 ~L~~~glI~~ 357 (394)
T PRK00411 348 KLDMLGIINT 357 (394)
T ss_pred HHHhcCCeEE
Confidence 9999999875
No 94
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=40.14 E-value=49 Score=22.42 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHhhcCCC
Q 046301 31 LSEIGEKIVDRCNGSPLAAKTLGSLLRDKYD 61 (404)
Q Consensus 31 ~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~ 61 (404)
+..+.-.|++.|+|++=-+.++-+.|+.|+|
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 4567788999999999999999999999965
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.12 E-value=0.56 Score=46.23 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=20.4
Q ss_pred ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.++ .+.+..++....-..-+...+..+..++.|.++.+.
T Consensus 263 ~l~-~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 263 TLR-VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhh-hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 334 555555544333344445555566666666665543
No 96
>PF14516 AAA_35: AAA-like domain
Probab=34.03 E-value=3.7e+02 Score=25.14 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=39.7
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcC
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK 59 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~ 59 (404)
++++++.+|..+|..++-..-. ....+++...++|+|.-+..++..+...
T Consensus 197 ~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 197 ELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred eCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5789999999999988753211 1338999999999999999999988764
No 97
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.58 E-value=4e+02 Score=28.49 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=93.6
Q ss_pred CCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccchhHH
Q 046301 5 NLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIM 84 (404)
Q Consensus 5 ~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~ 84 (404)
.++.|||-++|...- +..- -..-++.+.++.+|=+-|+..++-.++...+.+.--..+.. ..+.+.
T Consensus 193 rf~~eE~~~fl~~~~---~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~~~~l~ 258 (894)
T COG2909 193 RFDTEEAAAFLNDRG---SLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------AASHLS 258 (894)
T ss_pred cCChHHHHHHHHHcC---CCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------hHHHHH
Confidence 368899999998766 1111 12556888999999999999999888844333322111111 112222
Q ss_pred HH-HHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCccc-ccCCC
Q 046301 85 GA-LRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW-SKIDA 162 (404)
Q Consensus 85 ~~-l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~-~~~~~ 162 (404)
+- ..--+|.||++.|...+-+|+++.- -++|+....++ +.+...+++|..++++-. .++..
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg~-------------~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTGE-------------ENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhcC-------------CcHHHHHHHHHhCCCceeeecCCC
Confidence 22 2223588999999998888887432 12344432221 345667999999999864 45667
Q ss_pred ceEEechHHHHHHHhhhcC
Q 046301 163 SRFLMHDLIHDLACWAFGE 181 (404)
Q Consensus 163 ~~~~mhdli~~~~~~i~~~ 181 (404)
.-++.|.+..||-+.....
T Consensus 322 ~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 322 QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ceeehhHHHHHHHHhhhcc
Confidence 7899999999998755433
No 98
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=28.49 E-value=2e+02 Score=23.66 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhh
Q 046301 85 GALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHS 151 (404)
Q Consensus 85 ~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~ 151 (404)
.-+...|..|....|-.|.| ....|++.|.|.+.-.+...-..+...+..+..
T Consensus 86 t~isR~Y~~ls~n~KL~fWY--------------~Lae~M~~G~VipvP~~Y~ls~~a~~vl~~I~~ 138 (159)
T PF09150_consen 86 TPISRAYGALSANTKLGFWY--------------QLAEGMEQGTVIPVPSGYQLSENANEVLEAIKQ 138 (159)
T ss_dssp -HHHHHHHCC-HHHHHHHHH--------------HHHHHHHTTSS--S-TT----HHHHHHHHHHHC
T ss_pred CHHHHHHhccCCcchHHHHH--------------HHHHHhcCCcEecCCCCCCcCHHHHHHHHHHHc
Confidence 45678999999999999999 678999999998766666666677777666543
No 99
>COG3903 Predicted ATPase [General function prediction only]
Probab=23.31 E-value=6e+02 Score=24.64 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=93.4
Q ss_pred CCCCCh-hhHHHHHHHcccCCC-CCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhh-----
Q 046301 3 LRNLLR-DDCLCIFVQHSLGRT-DFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWD----- 75 (404)
Q Consensus 3 ~~~L~~-~~a~~Lf~~~af~~~-~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~----- 75 (404)
+.+|+. +++.++|.-.|-... .......-...+.+|.++-+|.|++|.-.+...+.- ....--..++.-...
T Consensus 138 ~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~ 216 (414)
T COG3903 138 VPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGA 216 (414)
T ss_pred CCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhccc
Confidence 344443 368888876652111 111112234678999999999999999999988776 433333322211000
Q ss_pred --ccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCC
Q 046301 76 --LAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRS 153 (404)
Q Consensus 76 --~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~s 153 (404)
.....+.....+..||--|..-.+--|--++.|.-.+... ...|.+.|-.. ....-....-+..+++++
T Consensus 217 r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~ks 287 (414)
T COG3903 217 RLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKS 287 (414)
T ss_pred ccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhcc
Confidence 1112256777899999999888888887777776554332 34455554322 111233445577788888
Q ss_pred Cccccc-CCCceEEechHHHHHHH
Q 046301 154 FFQWSK-IDASRFLMHDLIHDLAC 176 (404)
Q Consensus 154 li~~~~-~~~~~~~mhdli~~~~~ 176 (404)
+....+ .+...++.-+..+.++.
T Consensus 288 lv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 288 LVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHH
Confidence 886432 12223333444444443
No 100
>COG3899 Predicted ATPase [General function prediction only]
Probab=23.29 E-value=5.2e+02 Score=27.95 Aligned_cols=155 Identities=16% Similarity=0.237 Sum_probs=93.4
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcC------CChhHHHHHHhhhhhh
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK------YDPKDWEDVLTSKIWD 75 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~------~~~~~w~~~l~~~~~~ 75 (404)
.++||+..|...+-.... ++... .-.+.+..|+++..|.|+-+.-+=..|... .+...|+.=.....
T Consensus 215 ~L~PL~~~d~~~lV~~~l-~~~~~----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-- 287 (849)
T COG3899 215 TLAPLSRADTNQLVAATL-GCTKL----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-- 287 (849)
T ss_pred ecCcCchhhHHHHHHHHh-CCccc----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--
Confidence 478899888888877665 33221 224778999999999999999888888764 23445543222110
Q ss_pred ccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCc
Q 046301 76 LAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFF 155 (404)
Q Consensus 76 ~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli 155 (404)
.......+.+.+..-.+.||...|...-..||+-..+ +.+.|...+-. .....+....+.|....++
T Consensus 288 ~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~ 354 (849)
T COG3899 288 ILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDALQEGLIL 354 (849)
T ss_pred CchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHhHhhcee
Confidence 1111123444577777999999999999999986544 44444443321 2234555556666554444
Q ss_pred cccc-----C--CCc-eEEechHHHHHHH
Q 046301 156 QWSK-----I--DAS-RFLMHDLIHDLAC 176 (404)
Q Consensus 156 ~~~~-----~--~~~-~~~mhdli~~~~~ 176 (404)
-.++ . ... +--.||.+++.+-
T Consensus 355 ~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 355 PLSETYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred ccccccccccccchhhHHhhHHHHHHHHh
Confidence 2111 1 111 2246888888774
No 101
>PF13730 HTH_36: Helix-turn-helix domain
Probab=22.90 E-value=1.6e+02 Score=18.74 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=28.1
Q ss_pred cCChhhhhhhhhcccCCCCc--eeC-hhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCc
Q 046301 93 YLPSYVKRCFAYCSFLPKGY--RFD-ERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFF 155 (404)
Q Consensus 93 ~L~~~~k~cfl~~a~fp~~~--~i~-~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli 155 (404)
.|++..+..+++++.+..+. .++ .+.+.. ..+ .+ .......+++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~-~~g----------~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAK-DLG----------VS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHH-HHC----------cC-HHHHHHHHHHHHHCcCC
Confidence 46667777777766664322 222 222222 111 11 35667789999988875
Done!