Query 046301
Match_columns 404
No_of_seqs 234 out of 2888
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 7.3E-26 2.5E-30 225.6 6.4 172 1-184 288-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 3.2E-19 1.1E-23 194.4 12.4 163 1-182 280-452 (1249)
3 1vt4_I APAF-1 related killer D 99.8 1.7E-18 5.9E-23 177.2 10.6 138 5-175 297-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.7 7.2E-17 2.5E-21 162.5 12.5 157 4-179 284-449 (591)
5 4fcg_A Uncharacterized protein 99.6 4.9E-15 1.7E-19 137.9 9.2 183 200-395 127-311 (328)
6 4fcg_A Uncharacterized protein 99.5 5.5E-15 1.9E-19 137.6 7.9 177 199-397 103-289 (328)
7 3zyi_A Leucine-rich repeat-con 99.5 3.6E-14 1.2E-18 138.0 10.8 129 198-338 73-203 (452)
8 1ogq_A PGIP-2, polygalacturona 99.5 1.9E-14 6.5E-19 133.0 8.4 128 200-339 50-182 (313)
9 3zyj_A Leucine-rich repeat-con 99.5 5.3E-14 1.8E-18 136.4 11.2 130 197-338 61-192 (440)
10 2o6q_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 125.3 12.1 180 198-396 35-216 (270)
11 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-13 4.9E-18 125.3 10.8 137 249-396 98-236 (285)
12 1ozn_A Reticulon 4 receptor; N 99.4 1.6E-13 5.4E-18 125.0 8.9 181 198-397 30-213 (285)
13 2z80_A TOLL-like receptor 2, v 99.4 1.4E-13 4.7E-18 129.5 8.4 183 198-397 50-234 (353)
14 2z66_A Variable lymphocyte rec 99.4 9.4E-14 3.2E-18 127.9 6.5 185 199-396 27-234 (306)
15 1p9a_G Platelet glycoprotein I 99.4 7.2E-13 2.4E-17 121.0 11.6 177 198-396 29-206 (290)
16 3rfs_A Internalin B, repeat mo 99.4 6.5E-13 2.2E-17 120.1 11.3 173 201-396 42-216 (272)
17 1ogq_A PGIP-2, polygalacturona 99.4 2.2E-13 7.7E-18 125.8 8.3 134 251-396 144-279 (313)
18 3m19_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 119.5 10.2 153 200-367 35-189 (251)
19 3rgz_A Protein brassinosteroid 99.4 2.5E-13 8.7E-18 140.7 9.1 163 221-396 486-715 (768)
20 2z62_A TOLL-like receptor 4, v 99.4 3.7E-13 1.3E-17 122.0 8.2 181 198-396 26-235 (276)
21 1h6u_A Internalin H; cell adhe 99.4 3.2E-12 1.1E-16 117.7 14.5 167 199-396 62-228 (308)
22 2id5_A Lingo-1, leucine rich r 99.4 1.1E-12 3.8E-17 128.3 11.4 179 198-395 30-210 (477)
23 1h6t_A Internalin B; cell adhe 99.4 3.5E-12 1.2E-16 116.5 13.7 165 201-396 47-211 (291)
24 1h6u_A Internalin H; cell adhe 99.4 2.1E-12 7.3E-17 118.9 12.3 166 201-397 42-207 (308)
25 2z80_A TOLL-like receptor 2, v 99.4 4.4E-13 1.5E-17 125.9 7.1 156 225-397 52-210 (353)
26 2z81_A CD282 antigen, TOLL-lik 99.4 1E-12 3.5E-17 130.8 9.7 182 199-397 25-208 (549)
27 1p9a_G Platelet glycoprotein I 99.4 1.7E-12 5.9E-17 118.4 10.3 153 225-397 31-184 (290)
28 1xeu_A Internalin C; cellular 99.4 4.8E-12 1.6E-16 113.8 12.5 148 220-396 36-183 (263)
29 3m19_A Variable lymphocyte rec 99.4 3E-12 1E-16 114.3 11.1 154 225-396 35-190 (251)
30 2o6q_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 116.4 10.2 154 225-396 37-192 (270)
31 3rfs_A Internalin B, repeat mo 99.4 9.6E-13 3.3E-17 119.0 7.6 153 199-368 62-216 (272)
32 3o6n_A APL1; leucine-rich repe 99.4 1.7E-12 5.8E-17 123.6 9.6 126 200-338 45-172 (390)
33 3vq2_A TLR4, TOLL-like recepto 99.3 1.4E-12 4.9E-17 131.4 8.9 131 198-341 30-163 (606)
34 3zyi_A Leucine-rich repeat-con 99.3 1.5E-12 5.2E-17 126.5 8.7 175 201-396 100-301 (452)
35 3rgz_A Protein brassinosteroid 99.3 1.8E-12 6.1E-17 134.3 9.7 43 349-396 649-691 (768)
36 4ezg_A Putative uncharacterize 99.3 3.7E-12 1.3E-16 109.3 10.2 130 252-396 62-192 (197)
37 3zyj_A Leucine-rich repeat-con 99.3 1.9E-12 6.5E-17 125.4 9.2 133 251-396 155-290 (440)
38 4eco_A Uncharacterized protein 99.3 1.9E-12 6.5E-17 131.2 9.3 139 254-396 431-577 (636)
39 2ell_A Acidic leucine-rich nuc 99.3 9.8E-13 3.3E-17 109.9 5.5 138 255-401 23-163 (168)
40 4g8a_A TOLL-like receptor 4; l 99.3 1.3E-12 4.3E-17 132.2 6.4 130 197-339 49-181 (635)
41 2z62_A TOLL-like receptor 4, v 99.3 1.9E-12 6.6E-17 117.2 7.0 131 225-368 28-160 (276)
42 1xku_A Decorin; proteoglycan, 99.3 4E-12 1.4E-16 118.2 9.0 84 199-292 51-134 (330)
43 3oja_B Anopheles plasmodium-re 99.3 5.8E-12 2E-16 126.8 10.7 86 221-317 95-181 (597)
44 2xwt_C Thyrotropin receptor; s 99.3 4.9E-12 1.7E-16 112.0 9.0 180 198-396 29-216 (239)
45 2z81_A CD282 antigen, TOLL-lik 99.3 1.7E-12 5.9E-17 129.2 6.6 155 225-396 26-183 (549)
46 1m9s_A Internalin B; cell inva 99.3 8.1E-12 2.8E-16 125.2 11.4 164 202-396 45-208 (605)
47 2ft3_A Biglycan; proteoglycan, 99.3 8.8E-12 3E-16 116.0 10.8 105 199-317 53-157 (332)
48 3e6j_A Variable lymphocyte rec 99.3 7E-12 2.4E-16 110.3 9.5 129 225-367 40-169 (229)
49 4ecn_A Leucine-rich repeat pro 99.3 2.3E-12 7.8E-17 133.9 7.3 104 223-338 489-602 (876)
50 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.7E-16 113.2 10.7 149 220-396 41-189 (291)
51 2z63_A TOLL-like receptor 4, v 99.3 4E-12 1.4E-16 127.0 8.5 178 198-395 26-210 (570)
52 4ezg_A Putative uncharacterize 99.3 1.8E-11 6.2E-16 105.0 11.4 147 200-367 44-191 (197)
53 4eco_A Uncharacterized protein 99.3 4.4E-12 1.5E-16 128.6 8.7 126 199-338 248-384 (636)
54 2id5_A Lingo-1, leucine rich r 99.3 5.2E-12 1.8E-16 123.5 8.8 156 225-397 32-188 (477)
55 2z66_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 117.0 7.2 176 200-396 78-259 (306)
56 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4E-16 108.2 9.6 130 199-340 31-162 (220)
57 3v47_A TOLL-like receptor 5B a 99.3 7.7E-12 2.6E-16 121.5 9.1 132 198-340 28-163 (455)
58 3vq2_A TLR4, TOLL-like recepto 99.3 3.2E-12 1.1E-16 128.9 6.5 131 225-368 32-164 (606)
59 4fmz_A Internalin; leucine ric 99.3 4.5E-11 1.5E-15 111.8 13.9 168 200-397 66-233 (347)
60 3oja_B Anopheles plasmodium-re 99.3 1.3E-11 4.6E-16 124.1 10.7 129 200-341 51-181 (597)
61 1ziw_A TOLL-like receptor 3; i 99.2 1.6E-11 5.3E-16 125.6 10.4 156 198-367 23-181 (680)
62 2o6s_A Variable lymphocyte rec 99.2 1E-11 3.6E-16 107.4 7.8 126 200-338 28-155 (208)
63 4g8a_A TOLL-like receptor 4; l 99.2 7.3E-12 2.5E-16 126.6 7.7 130 225-367 52-183 (635)
64 2v9t_B SLIT homolog 2 protein 99.2 8E-12 2.7E-16 109.2 6.9 130 225-368 32-163 (220)
65 2z7x_B TOLL-like receptor 1, v 99.2 1.4E-11 4.8E-16 121.8 9.5 100 225-339 21-123 (520)
66 3j0a_A TOLL-like receptor 5; m 99.2 2E-11 6.9E-16 127.7 11.1 182 198-396 22-215 (844)
67 3j0a_A TOLL-like receptor 5; m 99.2 2.5E-11 8.6E-16 127.0 11.8 158 223-396 22-185 (844)
68 3v47_A TOLL-like receptor 5B a 99.2 3E-11 1E-15 117.3 11.5 89 301-396 293-382 (455)
69 4ecn_A Leucine-rich repeat pro 99.2 5.3E-12 1.8E-16 131.2 6.3 163 219-396 442-630 (876)
70 2ast_B S-phase kinase-associat 99.2 9.8E-13 3.3E-17 122.6 0.8 182 200-395 93-282 (336)
71 3o6n_A APL1; leucine-rich repe 99.2 1.9E-11 6.4E-16 116.4 9.6 133 222-368 42-176 (390)
72 2je0_A Acidic leucine-rich nuc 99.2 1.6E-12 5.4E-17 106.3 1.8 130 254-392 15-147 (149)
73 3e6j_A Variable lymphocyte rec 99.2 2.4E-11 8.4E-16 106.8 9.3 130 197-340 37-168 (229)
74 3t6q_A CD180 antigen; protein- 99.2 1.6E-11 5.5E-16 123.7 9.3 125 201-336 279-405 (606)
75 4fmz_A Internalin; leucine ric 99.2 5E-11 1.7E-15 111.5 11.6 150 221-396 173-322 (347)
76 2z63_A TOLL-like receptor 4, v 99.2 1.7E-11 5.7E-16 122.6 8.7 140 251-396 368-529 (570)
77 1m9s_A Internalin B; cell inva 99.2 2.8E-11 9.5E-16 121.3 10.3 148 221-396 39-186 (605)
78 2v70_A SLIT-2, SLIT homolog 2 99.2 1.2E-11 4.1E-16 108.1 6.5 130 225-368 32-164 (220)
79 2v9t_B SLIT homolog 2 protein 99.2 4.5E-11 1.5E-15 104.4 10.2 130 198-340 30-161 (220)
80 2ell_A Acidic leucine-rich nuc 99.2 3.2E-11 1.1E-15 100.5 8.6 130 199-341 23-157 (168)
81 2xwt_C Thyrotropin receptor; s 99.2 2E-11 6.7E-16 108.1 7.6 174 199-394 54-235 (239)
82 1xku_A Decorin; proteoglycan, 99.2 7.7E-11 2.7E-15 109.5 11.9 134 248-396 137-274 (330)
83 1o6v_A Internalin A; bacterial 99.2 1.1E-10 3.7E-15 113.9 13.0 126 252-396 261-386 (466)
84 1wwl_A Monocyte differentiatio 99.2 4.5E-12 1.5E-16 117.0 2.9 179 199-397 94-286 (312)
85 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 104.5 4.7 106 219-339 13-121 (176)
86 1o6v_A Internalin A; bacterial 99.2 7.1E-11 2.4E-15 115.2 11.4 172 200-396 68-254 (466)
87 3t6q_A CD180 antigen; protein- 99.2 4.3E-11 1.5E-15 120.6 9.6 83 252-337 372-455 (606)
88 2o6s_A Variable lymphocyte rec 99.2 5.8E-11 2E-15 102.7 9.0 147 224-395 27-175 (208)
89 3oja_A Leucine-rich immune mol 99.2 1.6E-11 5.6E-16 120.3 6.2 109 274-396 139-248 (487)
90 3bz5_A Internalin-J, INLJ; leu 99.2 7.1E-11 2.4E-15 114.7 10.6 162 200-397 42-203 (457)
91 1wwl_A Monocyte differentiatio 99.2 1.5E-11 5.3E-16 113.4 5.6 177 199-398 120-309 (312)
92 2je0_A Acidic leucine-rich nuc 99.2 1.9E-11 6.3E-16 99.8 5.4 124 201-337 18-146 (149)
93 4b8c_D Glucose-repressible alc 99.2 1.8E-11 6.1E-16 125.6 6.5 106 220-339 219-324 (727)
94 1xeu_A Internalin C; cellular 99.2 1.1E-10 3.8E-15 104.8 10.6 140 201-366 42-181 (263)
95 2ast_B S-phase kinase-associat 99.2 4.9E-12 1.7E-16 117.8 1.3 164 220-396 88-258 (336)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 4.7E-11 1.6E-15 119.3 8.4 82 249-338 69-153 (562)
97 2z7x_B TOLL-like receptor 1, v 99.1 8E-11 2.7E-15 116.4 9.6 155 222-396 321-479 (520)
98 2ft3_A Biglycan; proteoglycan, 99.1 1E-10 3.4E-15 108.8 9.5 130 251-396 142-275 (332)
99 2xot_A Amphoterin-induced prot 99.1 6.7E-11 2.3E-15 111.4 8.4 155 198-367 37-199 (361)
100 3bz5_A Internalin-J, INLJ; leu 99.1 3E-10 1E-14 110.3 13.1 166 200-396 64-244 (457)
101 1dce_A Protein (RAB geranylger 99.1 2.5E-11 8.7E-16 120.8 5.5 126 257-392 442-567 (567)
102 1ziw_A TOLL-like receptor 3; i 99.1 8.9E-11 3E-15 120.0 9.6 141 249-396 473-620 (680)
103 4glp_A Monocyte differentiatio 99.1 6.3E-11 2.2E-15 109.1 7.7 177 200-397 117-306 (310)
104 4b8c_D Glucose-repressible alc 99.1 5.9E-11 2E-15 121.8 8.0 115 247-370 215-329 (727)
105 4ay9_X Follicle-stimulating ho 99.1 1.7E-10 5.8E-15 108.1 10.2 181 198-394 28-255 (350)
106 4glp_A Monocyte differentiatio 99.1 6.6E-11 2.3E-15 109.0 7.3 181 201-398 92-285 (310)
107 2xot_A Amphoterin-induced prot 99.1 3E-11 1E-15 113.8 5.0 155 225-396 39-200 (361)
108 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.9E-17 112.0 -3.8 129 250-391 42-180 (198)
109 1a9n_A U2A', U2A'; complex (nu 99.1 7.3E-11 2.5E-15 99.2 6.8 127 199-341 18-150 (176)
110 3o53_A Protein LRIM1, AGAP0063 99.1 4.7E-11 1.6E-15 110.3 5.5 122 200-336 34-174 (317)
111 2wfh_A SLIT homolog 2 protein 99.1 1.4E-10 4.7E-15 99.1 7.0 106 256-368 31-137 (193)
112 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.3E-15 99.3 6.7 105 257-368 30-137 (192)
113 3o53_A Protein LRIM1, AGAP0063 99.1 4.8E-11 1.6E-15 110.3 3.9 169 201-393 100-270 (317)
114 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 5.2E-10 1.8E-14 111.6 11.5 155 222-396 350-508 (562)
115 3oja_A Leucine-rich immune mol 99.0 1.2E-10 4.2E-15 114.1 5.9 169 200-392 99-269 (487)
116 1dce_A Protein (RAB geranylger 99.0 2.5E-10 8.7E-15 113.6 6.9 100 226-341 442-543 (567)
117 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.9E-14 92.7 9.7 103 225-340 31-135 (193)
118 3cvr_A Invasion plasmid antige 99.0 1.4E-09 4.7E-14 108.0 10.3 155 200-396 80-241 (571)
119 2ca6_A RAN GTPase-activating p 99.0 9.1E-11 3.1E-15 111.5 1.1 190 200-396 60-285 (386)
120 1w8a_A SLIT protein; signaling 99.0 1.2E-09 4.3E-14 93.0 8.1 106 225-341 29-136 (192)
121 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 91.5 7.8 103 225-339 28-132 (177)
122 2o6r_A Variable lymphocyte rec 98.9 2.1E-09 7.2E-14 90.2 8.5 111 256-373 28-140 (177)
123 3g06_A SSPH2 (leucine-rich rep 98.9 4.2E-09 1.4E-13 105.8 11.8 75 307-396 221-295 (622)
124 2ca6_A RAN GTPase-activating p 98.9 2.2E-10 7.6E-15 108.8 2.3 194 200-398 94-316 (386)
125 1jl5_A Outer protein YOPM; leu 98.9 7.1E-09 2.4E-13 100.5 12.2 120 252-396 149-268 (454)
126 3g06_A SSPH2 (leucine-rich rep 98.9 1E-08 3.5E-13 103.0 13.1 66 255-326 120-199 (622)
127 1jl5_A Outer protein YOPM; leu 98.9 9.5E-09 3.3E-13 99.6 11.3 159 199-396 130-288 (454)
128 3goz_A Leucine-rich repeat-con 98.8 5.6E-10 1.9E-14 105.1 1.9 190 201-396 52-264 (362)
129 1ds9_A Outer arm dynein; leuci 98.8 1.6E-10 5.4E-15 99.1 -1.8 125 258-396 25-151 (198)
130 3g39_A Variable lymphocyte rec 98.8 4.5E-09 1.5E-13 87.7 6.7 79 256-339 30-110 (170)
131 3g39_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 85.1 9.1 104 257-369 10-114 (170)
132 2r9u_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 85.2 9.1 81 256-341 33-115 (174)
133 2r9u_A Variable lymphocyte rec 98.8 6.6E-09 2.3E-13 87.0 6.8 95 225-331 33-128 (174)
134 1z7x_W Ribonuclease inhibitor; 98.7 8.6E-10 2.9E-14 107.1 -1.0 14 383-396 254-267 (461)
135 3ogk_B Coronatine-insensitive 98.7 3.1E-09 1.1E-13 106.6 2.8 136 253-393 161-326 (592)
136 3cvr_A Invasion plasmid antige 98.7 1.8E-08 6.1E-13 100.0 8.1 148 199-384 99-253 (571)
137 3goz_A Leucine-rich repeat-con 98.7 5E-09 1.7E-13 98.6 2.8 191 200-396 80-295 (362)
138 4ay9_X Follicle-stimulating ho 98.7 8.7E-08 3E-12 89.6 11.0 148 200-365 104-254 (350)
139 1z7x_W Ribonuclease inhibitor; 98.6 1.6E-09 5.4E-14 105.2 -2.0 193 200-397 3-211 (461)
140 2p1m_B Transport inhibitor res 98.6 2.3E-08 7.8E-13 100.2 4.7 130 201-337 106-241 (594)
141 2ifg_A High affinity nerve gro 98.6 3.6E-08 1.2E-12 92.0 5.6 85 221-317 27-113 (347)
142 3ogk_B Coronatine-insensitive 98.4 1.1E-07 3.9E-12 95.1 4.5 166 222-396 189-389 (592)
143 2ifg_A High affinity nerve gro 98.4 3.8E-07 1.3E-11 84.9 6.4 85 252-341 27-113 (347)
144 3un9_A NLR family member X1; l 98.3 8.4E-09 2.9E-13 97.2 -5.6 162 199-368 71-250 (372)
145 3sb4_A Hypothetical leucine ri 98.2 8.4E-07 2.9E-11 82.0 5.6 99 278-391 225-327 (329)
146 2p1m_B Transport inhibitor res 98.2 1.2E-07 4E-12 95.1 -0.9 112 222-339 102-219 (594)
147 2ra8_A Uncharacterized protein 98.1 9.7E-07 3.3E-11 82.5 2.2 168 221-396 135-318 (362)
148 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.5E-10 71.9 4.6 81 253-339 167-259 (267)
149 3un9_A NLR family member X1; l 97.8 1.1E-06 3.9E-11 82.6 -2.3 137 200-340 101-248 (372)
150 3e4g_A ATP synthase subunit S, 97.7 1E-05 3.5E-10 66.9 1.7 37 256-292 61-99 (176)
151 3sb4_A Hypothetical leucine ri 97.6 9.2E-05 3.2E-09 68.2 6.4 79 253-338 223-304 (329)
152 2ra8_A Uncharacterized protein 97.5 8.2E-05 2.8E-09 69.4 5.3 138 250-396 133-290 (362)
153 3e4g_A ATP synthase subunit S, 97.3 0.00016 5.4E-09 59.7 4.1 99 270-373 52-155 (176)
154 1io0_A Tropomodulin; LRR prote 97.3 1.9E-05 6.6E-10 66.3 -1.7 70 248-317 28-103 (185)
155 3rw6_A Nuclear RNA export fact 97.3 5.2E-05 1.8E-09 67.3 0.8 82 252-337 137-226 (267)
156 4fdw_A Leucine rich hypothetic 97.2 0.00063 2.1E-08 64.4 7.9 66 247-317 171-236 (401)
157 1io0_A Tropomodulin; LRR prote 97.2 4.9E-05 1.7E-09 63.8 0.1 115 220-338 31-158 (185)
158 4fdw_A Leucine rich hypothetic 97.1 0.001 3.5E-08 63.0 7.8 129 250-395 220-355 (401)
159 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.3E-08 49.9 5.9 54 259-318 11-66 (130)
160 2qen_A Walker-type ATPase; unk 96.3 0.043 1.5E-06 50.2 12.3 148 2-175 199-348 (350)
161 2fna_A Conserved hypothetical 95.7 0.032 1.1E-06 51.3 8.8 146 2-174 205-355 (357)
162 1w5s_A Origin recognition comp 93.5 0.15 5.2E-06 47.8 7.4 141 1-158 210-371 (412)
163 4gt6_A Cell surface protein; l 93.1 0.48 1.7E-05 44.2 10.2 128 249-395 258-388 (394)
164 4h09_A Hypothetical leucine ri 93.1 0.3 1E-05 45.2 8.6 79 251-336 258-338 (379)
165 3rfe_A Platelet glycoprotein I 92.3 0.12 4E-06 40.1 3.9 36 257-292 32-68 (130)
166 4fs7_A Uncharacterized protein 90.9 0.28 9.6E-06 45.8 5.7 83 248-338 289-373 (394)
167 4fs7_A Uncharacterized protein 90.9 0.65 2.2E-05 43.3 8.2 16 251-266 248-263 (394)
168 4gt6_A Cell surface protein; l 90.1 0.68 2.3E-05 43.1 7.5 103 220-338 260-364 (394)
169 4h09_A Hypothetical leucine ri 89.1 0.67 2.3E-05 42.8 6.6 81 250-337 234-316 (379)
170 1pgv_A TMD-1, tropomodulin TMD 84.4 0.16 5.4E-06 42.5 -0.5 70 248-317 33-108 (197)
171 1hqc_A RUVB; extended AAA-ATPa 84.0 1.2 4.2E-05 40.0 5.2 137 2-157 164-324 (324)
172 2v1u_A Cell division control p 79.8 14 0.00049 33.5 11.1 137 1-158 196-351 (387)
173 1pgv_A TMD-1, tropomodulin TMD 76.4 1.1 3.7E-05 37.4 1.9 93 222-317 38-136 (197)
174 1njg_A DNA polymerase III subu 72.1 3.1 0.0001 35.0 3.9 52 1-56 180-231 (250)
175 2qby_B CDC6 homolog 3, cell di 71.3 30 0.001 31.4 10.8 135 2-158 193-339 (384)
176 1fnn_A CDC6P, cell division co 45.0 1.1E+02 0.0038 27.4 9.6 137 2-159 189-352 (389)
177 2vda_B Maltoporin; sugar trans 32.8 23 0.00077 18.1 1.4 18 42-59 8-25 (28)
178 2qby_A CDC6 homolog 1, cell di 31.6 1.3E+02 0.0046 26.7 7.9 135 2-157 193-347 (386)
179 2chg_A Replication factor C sm 28.8 37 0.0013 27.5 3.2 52 2-57 157-208 (226)
180 1ci4_A Protein (barrier-TO-aut 26.1 1.7E+02 0.0058 20.5 6.4 55 14-70 9-64 (89)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=7.3e-26 Score=225.59 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=135.3
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccc
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDR 80 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~ 80 (404)
|+|++|+++|||+||+++||+... ++.+++++++|+++|+|+||||+++|+.|+.+ +. .|...+....+.. ..
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~ 360 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GL 360 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CS
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cH
Confidence 579999999999999999986542 46788999999999999999999999999876 32 2323333222211 23
Q ss_pred hhHHHHHHHHHhcCChhhhhhhh-----------hcccCCCCceeChhHHHHHHHHC--CCcccCCCCCcHHHHHHHHHH
Q 046301 81 SSIMGALRVSYHYLPSYVKRCFA-----------YCSFLPKGYRFDERQIVLLWMAE--GLLQHETYGKQMEELGRKSFQ 147 (404)
Q Consensus 81 ~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~ 147 (404)
..+..++++||+.||...|.||+ |||+||+++.|+ +..|+|+ |++.........++.+. +++
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~ 435 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK 435 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence 56888999999999999999999 999999999998 8899999 99987554556677777 999
Q ss_pred HHhhCCCcccccC-CCceEEechHHHHHHHhhhcCceE
Q 046301 148 VLHSRSFFQWSKI-DASRFLMHDLIHDLACWAFGEISS 184 (404)
Q Consensus 148 ~L~~~sli~~~~~-~~~~~~mhdli~~~~~~i~~~~~~ 184 (404)
+|+++||++.... ...+|+|||++|++|+.++.+++.
T Consensus 436 ~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999998653 356799999999999999877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.78 E-value=3.2e-19 Score=194.39 Aligned_cols=163 Identities=22% Similarity=0.289 Sum_probs=133.9
Q ss_pred CCCCC-CChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhcc--
Q 046301 1 HSLRN-LLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLA-- 77 (404)
Q Consensus 1 y~~~~-L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~-- 77 (404)
|++++ |+++||++||+..++... +.+++.+++|+++|+|+||||+++|+.|+.+. ..|+..++.+.....
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCC
T ss_pred EEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhh
Confidence 34664 999999999999984322 34457799999999999999999999999883 579888876543221
Q ss_pred ------ccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhh
Q 046301 78 ------EDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHS 151 (404)
Q Consensus 78 ------~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~ 151 (404)
.....+..++.+||+.|++++|.||+|||+||+++.|++..++..|.++ .+.+..++++|++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVN 420 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHh
Confidence 1125689999999999999999999999999999999999999999653 2677889999999
Q ss_pred CCCcccccCC-CceEEechHHHHHHHhhhcCc
Q 046301 152 RSFFQWSKID-ASRFLMHDLIHDLACWAFGEI 182 (404)
Q Consensus 152 ~sli~~~~~~-~~~~~mhdli~~~~~~i~~~~ 182 (404)
+||++....+ ...|+||++++++++....++
T Consensus 421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999875432 345999999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.75 E-value=1.7e-18 Score=177.15 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=115.5
Q ss_pred CCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCC-ChhHHHHHHhhhhhhccccchhH
Q 046301 5 NLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY-DPKDWEDVLTSKIWDLAEDRSSI 83 (404)
Q Consensus 5 ~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~i 83 (404)
+|+.+|||+||++. |+.. ..+++.++ |+|+||||+++|+.|+++. +.+.|+.. ....+
T Consensus 297 ~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I 355 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKL 355 (1221)
T ss_dssp CCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHH
T ss_pred CcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHH
Confidence 89999999999998 4332 12334444 9999999999999999884 47788643 23679
Q ss_pred HHHHHHHHhcCChhh-hhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcccccCCC
Q 046301 84 MGALRVSYHYLPSYV-KRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDA 162 (404)
Q Consensus 84 ~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~~~ 162 (404)
..+++.||+.||++. |.||++||+||+++.|++..++..|+++| ++.+..++++|+++||++.. .+.
T Consensus 356 ~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~ 423 (1221)
T 1vt4_I 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKE 423 (1221)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCC
Confidence 999999999999999 99999999999999999999999999876 13578899999999999974 345
Q ss_pred ceEEechHHHHHH
Q 046301 163 SRFLMHDLIHDLA 175 (404)
Q Consensus 163 ~~~~mhdli~~~~ 175 (404)
..++|||++++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 7899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.69 E-value=7.2e-17 Score=162.53 Aligned_cols=157 Identities=25% Similarity=0.354 Sum_probs=127.7
Q ss_pred CCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhcc------
Q 046301 4 RNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLA------ 77 (404)
Q Consensus 4 ~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~------ 77 (404)
++|+.+||++||...++... ....+.+.+|+++|+|+||||+.+|..|+.+ ...|+..++.+.....
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~ 356 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKS 356 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCC
T ss_pred CCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhc
Confidence 58999999999999986421 2234678999999999999999999999987 3479887776543221
Q ss_pred --ccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCc
Q 046301 78 --EDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFF 155 (404)
Q Consensus 78 --~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli 155 (404)
.....+..++..||+.||++.|.||+++|+||+|+.|+...++..|.++ .+.+...+.+|+++||+
T Consensus 357 ~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp CSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSS
T ss_pred cccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCe
Confidence 1225789999999999999999999999999999999999999988642 14567889999999999
Q ss_pred ccccC-CCceEEechHHHHHHHhhh
Q 046301 156 QWSKI-DASRFLMHDLIHDLACWAF 179 (404)
Q Consensus 156 ~~~~~-~~~~~~mhdli~~~~~~i~ 179 (404)
+.... ....++||++++++++...
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred EEecCCCccEEEEcHHHHHHHHhhh
Confidence 86542 3357999999999998773
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=4.9e-15 Score=137.95 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=130.4
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccc--cccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTF--YVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE 277 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 277 (404)
..++.|.+..+.+..+ ...+.++++|+.|.+..+...... ..........+.++++|++|++++|.+..+|..++.
T Consensus 127 ~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCCCC--CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred CCCCEEECCCCccccC--cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 4577777777766532 345677888888888775411000 000000112244588899999999988888888889
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH 357 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 357 (404)
+++|++|++++|.+..+|. .++.+++|++|++++|.....+|..++.+++|++|++..+... ...+..+.++++
T Consensus 205 l~~L~~L~L~~N~l~~l~~-----~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~ 278 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQ 278 (328)
T ss_dssp CTTCCEEEEESSCCCCCCG-----GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTT
T ss_pred CCCCCEEEccCCCCCcCch-----hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCC
Confidence 9999999999998886664 4889999999999998788888888899999999866543322 334456788888
Q ss_pred cccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
|+ .|+++++.... .+|..+.++++|+.+.+..+
T Consensus 279 L~-~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LE-KLDLRGCVNLS----RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CC-EEECTTCTTCC----CCCGGGGGSCTTCEEECCGG
T ss_pred CC-EEeCCCCCchh----hccHHHhhccCceEEeCCHH
Confidence 88 89998866543 45566888888998888654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=5.5e-15 Score=137.57 Aligned_cols=177 Identities=21% Similarity=0.211 Sum_probs=134.2
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc-cccCccccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI-VQLPNDIAE 277 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~lp~~~~~ 277 (404)
...++.+.+..+.+..+ ...+.++++|+.|.+..+. .. ..+..+.++++|++|++++|.+ ..+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~Ls~n~-------l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNP-------LR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCCCC--CSCGGGGTTCSEEEEESCC-------CC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCccch--hHHHhccCCCCEEECCCCc-------cc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 34678888887776532 2456778889999888765 12 2344588889999999998664 477877654
Q ss_pred ---------CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCC
Q 046301 278 ---------LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYG 348 (404)
Q Consensus 278 ---------L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~ 348 (404)
+++|++|++++|.+..+|. .++++++|++|++++| .+..+|..++++++|++|++..+... ...
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~-----~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~-~~~ 245 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPA-----SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTAL-RNY 245 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCG-----GGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTC-CBC
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchH-----hhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcch-hhh
Confidence 8899999999998886664 4999999999999998 77889888999999999966543322 334
Q ss_pred ccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 349 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 349 ~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
+..+..+++|+ .|.+.++.... .+|..+.++++|+.|+|+.|..
T Consensus 246 p~~~~~l~~L~-~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 246 PPIFGGRAPLK-RLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCCTTCCCCCC-EEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTT
T ss_pred HHHhcCCCCCC-EEECCCCCchh----hcchhhhcCCCCCEEeCCCCCc
Confidence 55688889999 99998866543 4455688899999999988763
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=3.6e-14 Score=138.05 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=93.7
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~ 276 (404)
++..++.|.+..+.+..+. ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|.+..+|+. +.
T Consensus 73 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS-------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc-------cCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 4567888888887766532 3456788999999888765 3445566788889999999999998877765 77
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 338 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~ 338 (404)
.+++|++|++++|.+..+|.. .+.++++|++|++++|..+..+|.. +.++++|++|++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccCCCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 889999999999988877653 4666677777777665566666553 566666666643
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.51 E-value=1.9e-14 Score=133.04 Aligned_cols=128 Identities=18% Similarity=0.247 Sum_probs=82.9
Q ss_pred CCcceEEEEeccCccc-cccccccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccc
Q 046301 200 RNLRHLSYLTSQFDGI-KRFEGLHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIA 276 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~ 276 (404)
..++.+.+..+.+... .....+.++++|+.|.+.+ +. .....+..|.++++|++|++++|.+. .+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 5677777777665531 1234566778888887764 33 22233455677777777777777776 6777777
Q ss_pred cCCCcceEecCCCCcc-cCCCCCCCccccccccCceeecCCCCccccccccccccc-cccccCce
Q 046301 277 ELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT-SLRTLAKF 339 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~~~ 339 (404)
.+++|++|++++|.+. .+| ..+..+++|++|++++|.....+|..+++++ +|++|++.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp GCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CCCCCCEEeCCCCccCCcCC-----hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 7777777777777776 333 3477777777777777733336666666666 66666443
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=136.39 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=93.3
Q ss_pred ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-cc
Q 046301 197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DI 275 (404)
Q Consensus 197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~ 275 (404)
.++..++.+.+..+.+..+. ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|.++.+|+ .+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNH-------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CCCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSC-------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CCCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCc-------CCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 34567788888877765543 2456788899999888765 334555678888999999999999888776 58
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 338 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~ 338 (404)
..+++|++|++++|.+..+|.. .+.++++|++|++++|..+..+|.. +.++++|++|++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred hccccCceeeCCCCcccccCHH----HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 8889999999999988877653 4666666777777665556666543 566666666633
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1e-13 Score=125.29 Aligned_cols=180 Identities=19% Similarity=0.248 Sum_probs=137.7
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~ 276 (404)
++..++.+.+..+.+..+. ...+.++++|+.|.+..+. ...++...|.++++|++|++++|.+..+|.. +.
T Consensus 35 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-------LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-------CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-------cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4567888888887765533 2357789999999998765 3355566788999999999999999988754 58
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSL 355 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L 355 (404)
.+++|++|++++|.+..+|.. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+... ......+..+
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 180 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC
T ss_pred cccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-EeChhHhccC
Confidence 899999999999999977643 5789999999999999 78888876 789999999966433222 1122347788
Q ss_pred cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
++|+ .|.+.++.- . ...+..+..+++|+.|+++.|.
T Consensus 181 ~~L~-~L~L~~N~l-~---~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELK-TLKLDNNQL-K---RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCC-EEECCSSCC-S---CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcC-EEECCCCcC-C---cCCHHHhccccCCCEEEecCCC
Confidence 8999 999987532 2 3333457788999999998875
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=1.4e-13 Score=125.26 Aligned_cols=137 Identities=23% Similarity=0.213 Sum_probs=74.2
Q ss_pred hhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-
Q 046301 249 FHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR- 326 (404)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~- 326 (404)
+..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. .++.+++|++|++++| .+..+|..
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~ 172 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGN-RISSVPERA 172 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh----HhccCCCccEEECCCC-cccccCHHH
Confidence 33455555566666666555544 33455556666666666655544422 3556666666666666 45555543
Q ss_pred ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+..+++|++|++..+... ...+..+..+++|+ .|.+.++.- .+..+..+..+++|+.|+++.|.
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM-TLYLFANNL----SALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCccc-ccCHhHccCccccc-EeeCCCCcC----CcCCHHHcccCcccCEEeccCCC
Confidence 666666666644322211 11234455666666 666665432 12222345666777777776654
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=1.6e-13 Score=125.03 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=134.1
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc-Cccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL-PNDI 275 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~~ 275 (404)
.+..++.+.+..+.+.... ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|. +..+ |..+
T Consensus 30 ~~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CCTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 4567888888777665532 2346788999999987765 234445678889999999999997 7776 6778
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccc
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRS 354 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 354 (404)
..+++|++|++++|.+..++. ..+.++++|++|++++| .+..+|.. ++++++|++|++..+... ......+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 175 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRG 175 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTT
T ss_pred cCCcCCCEEECCCCcCCEECH----hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc-ccCHHHhcC
Confidence 899999999999999887643 35888999999999998 67777755 888999999965433221 111223777
Q ss_pred ccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 355 LMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
+++|+ .|.+.++. +.+..+..+.++++|+.|+++.|.-
T Consensus 176 l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 176 LHSLD-RLLLHQNR----VAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CTTCC-EEECCSSC----CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccccC-EEECCCCc----ccccCHhHccCcccccEeeCCCCcC
Confidence 88888 88887754 3344466788899999999988753
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=129.47 Aligned_cols=183 Identities=16% Similarity=0.198 Sum_probs=140.1
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|+.|.+.++. .....+..|.++++|++|++++|.++.+|.. ++
T Consensus 50 ~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp CCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 3457888888877765532 2357789999999998765 3345566789999999999999999999877 88
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCceEeccCCcCCccccccc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCYGLKELRSL 355 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L 355 (404)
.+++|++|++++|.+..+|.. ..+.++++|++|++++|..+..+| ..++++++|++|++..+... ...+..+..+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l 197 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSI 197 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTC
T ss_pred CCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhcc
Confidence 999999999999999987751 148899999999999986677775 45899999999976654332 2234567888
Q ss_pred cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
++|+ .|.+.++.. ...+. ..+..+++|+.|+++.|.-
T Consensus 198 ~~L~-~L~l~~n~l-~~~~~---~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 198 QNVS-HLILHMKQH-ILLLE---IFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp SEEE-EEEEECSCS-TTHHH---HHHHHTTTEEEEEEESCBC
T ss_pred ccCC-eecCCCCcc-ccchh---hhhhhcccccEEECCCCcc
Confidence 8999 999987653 33333 2344578999999988763
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=9.4e-14 Score=127.85 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=96.1
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
+..++.+.+..+.+..+. ...+.++++|+.|.+..+.-. .....+..+..+++|++|++++|.+..+|..+..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 27 PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLS-----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCC-----EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccC-----cccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 456677776666554322 122456777777777655410 00111222334566666666666666566556666
Q ss_pred CCcceEecCCCCcccCCC--C-------------------CCCccccccccCceeecCCCCcccc--ccccccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPE--S-------------------KLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRT 335 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~--~-------------------~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~ 335 (404)
++|++|++++|.+..++. . ..|..+..+++|++|++++| .+.. +|..+..+++|++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCE
Confidence 666666666665554442 1 11223555666666666665 3332 5555666666666
Q ss_pred cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|++..+... ...+..+..+++|+ .|.+.++.- ....+..+..+++|+.|++++|.
T Consensus 180 L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 180 LDLSQCQLE-QLSPTAFNSLSSLQ-VLNMSHNNF----FSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTSCCC-EECTTTTTTCTTCC-EEECTTSCC----SBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCCcC-CcCHHHhcCCCCCC-EEECCCCcc----CccChhhccCcccCCEeECCCCC
Confidence 643322111 11123455666666 666665432 12222245667777777777665
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=7.2e-13 Score=121.00 Aligned_cols=177 Identities=17% Similarity=0.082 Sum_probs=131.0
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE 277 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 277 (404)
++..++.|.+..+.+.... ...+.++++|+.|.+..+.- ..+.. ...+++|++|++++|.+..+|..+..
T Consensus 29 ~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l-------~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~ 98 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-------TKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQT 98 (290)
T ss_dssp CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-------CEEEC--CSCCTTCCEEECCSSCCSSCCCCTTT
T ss_pred CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCcc-------CcccC--CCCCCcCCEEECCCCcCCcCchhhcc
Confidence 3467788888777765532 34577889999999987651 11222 26788999999999999999999999
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM 356 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 356 (404)
+++|++|++++|+++.+|.. .+..+++|++|++++| .+..+|.+ +..+++|+.|++..+... ......+..++
T Consensus 99 l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 172 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCT
T ss_pred CCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcC
Confidence 99999999999999977743 5889999999999998 67778766 688899999965433222 11112357788
Q ss_pred ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+|+ .|.+.++.- . .+|..+..+.+|+.|+|+.|.
T Consensus 173 ~L~-~L~L~~N~l-~----~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 173 NLD-TLLLQENSL-Y----TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCC-EEECCSSCC-C----CCCTTTTTTCCCSEEECCSCC
T ss_pred CCC-EEECCCCcC-C----ccChhhcccccCCeEEeCCCC
Confidence 888 898877543 2 344556677789999998765
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=6.5e-13 Score=120.11 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=112.8
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELK 279 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~ 279 (404)
.++.+.+..+.+. .++.+..+++|+.|.+.++.- ... ..+..+++|++|++++|.+..+|+. ++.++
T Consensus 42 ~L~~L~l~~~~i~---~~~~l~~l~~L~~L~l~~n~l-------~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 42 SIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-------HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TCCEEECTTSCCC---CCTTGGGCTTCCEEECTTSCC-------CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ceeeeeeCCCCcc---cccccccCCCCcEEECCCCCC-------CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 3455555444332 344566778888888876651 111 2467788888888888888766654 57788
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccccc
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL 358 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 358 (404)
+|++|++++|.+..+|.. .++.+++|++|++++| .+..+|.. ++++++|++|++..+... ......+..+++|
T Consensus 110 ~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 183 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL 183 (272)
T ss_dssp TCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCCccCHH----HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccC
Confidence 888888888888766543 4677888888888888 56666655 577888888855433222 1122235677778
Q ss_pred ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+ .|.+.++.- .+..+..+..+++|+.|+++.|.
T Consensus 184 ~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 184 K-DLRLYQNQL----KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp C-EEECCSSCC----SCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-EEECCCCcC----CccCHHHHhCCcCCCEEEccCCC
Confidence 7 788776532 23333456777888888887664
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=2.2e-13 Score=125.81 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred hhccCccccEEEecCCCcc-ccCcccccCC-CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccc
Q 046301 251 VVPRLRQLRVVSLCGYKIV-QLPNDIAELK-HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIG 328 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~-~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 328 (404)
.+..+++|++|++++|.+. .+|..++.+. +|++|++++|.+.. .+|..+..+. |++|++++|......|..++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----ECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----cCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 3444444444444444444 4444444444 44444444444431 1122344444 55555555522223444455
Q ss_pred ccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 329 KLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 329 ~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
++++|++|++..+... ..+..+..+++|+ .|++.++. +.+..|..+..+++|+.|+++.|.
T Consensus 219 ~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~-~L~Ls~N~----l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLA--FDLGKVGLSKNLN-GLDLRNNR----IYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp TTSCCSEEECCSSEEC--CBGGGCCCCTTCC-EEECCSSC----CEECCCGGGGGCTTCCEEECCSSE
T ss_pred cCCCCCEEECCCCcee--eecCcccccCCCC-EEECcCCc----ccCcCChHHhcCcCCCEEECcCCc
Confidence 5566666544322211 1233355566666 66666543 223445566777777777777664
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=4.9e-13 Score=119.45 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L 278 (404)
..++.+.+..+.+.... ...+.++++|+.|.+.++. .....+..|..+++|++|++++|.+..+|+ .+..+
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-------CCccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence 44555555555443322 1234455566666555543 222334445555666666666666655443 34555
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH 357 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 357 (404)
++|++|++++|.++.+|.. .+..+++|++|++++| .+..+|. .++.+++|++|++..+... ......+..+++
T Consensus 107 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~ 180 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGK 180 (251)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT
T ss_pred CCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCC
Confidence 6666666666665554432 2455666666666665 4555554 3555566666544322211 111123445555
Q ss_pred cccceEEcCC
Q 046301 358 LQEKLTISGL 367 (404)
Q Consensus 358 L~~~L~l~~~ 367 (404)
|+ .|.+.++
T Consensus 181 L~-~L~l~~N 189 (251)
T 3m19_A 181 LQ-TITLFGN 189 (251)
T ss_dssp CC-EEECCSC
T ss_pred CC-EEEeeCC
Confidence 55 5555543
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=2.5e-13 Score=140.71 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=112.0
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcc-cCCCC-
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIE-VLPES- 297 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~-~lp~~- 297 (404)
+.++++|+.|.+..+. .....+..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..
T Consensus 486 l~~l~~L~~L~L~~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNR-------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGGCTTCCEEECCSSC-------CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred HhcCCCCCEEEccCCc-------cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 4445555555555443 22233445666777777777777776 66777777777777777777654 34321
Q ss_pred ----------------------------------------------------------------CCCccccccccCceee
Q 046301 298 ----------------------------------------------------------------KLFPDVGNLVNLRHLK 313 (404)
Q Consensus 298 ----------------------------------------------------------------~~p~~~~~l~~L~~L~ 313 (404)
.+|..++.+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 1234456678888888
Q ss_pred cCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEE
Q 046301 314 DSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 393 (404)
Q Consensus 314 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 393 (404)
+++|.....+|..++++++|+.|++..+... +..+..+++|++|+ .|+++++. +.+.+|..+.++++|+.|+++
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~-~LdLs~N~----l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLN-ILDLSSNK----LDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCC-EEECCSSC----CEECCCGGGGGCCCCSEEECC
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCC-EEECCCCc----ccCcCChHHhCCCCCCEEECc
Confidence 8888666688888999999998866544332 45667788888998 88888744 445667778889999999998
Q ss_pred ecC
Q 046301 394 WVN 396 (404)
Q Consensus 394 ~~~ 396 (404)
+|.
T Consensus 713 ~N~ 715 (768)
T 3rgz_A 713 NNN 715 (768)
T ss_dssp SSE
T ss_pred CCc
Confidence 885
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=3.7e-13 Score=121.98 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=105.9
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|+.|.+.++. ...+.+..|.++++|++|++++|.+..++ ..+.
T Consensus 26 l~~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCTTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-------CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3456777777666554432 1245667778888776654 23344455677777777777777777554 4567
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc--ccccccccccccccCceEeccCC--cCCcccc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGN--CYGLKEL 352 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~--~~~~~~l 352 (404)
.+++|++|++++|.+..++.. .++++++|++|++++| .+.. +|..++++++|++|++..+.... ...+..+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCccccEEECCCCCccccCch----hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 777777777777777665542 3666666777777666 3443 45666666666666443322111 0011111
Q ss_pred c------------------------cccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 353 R------------------------SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 353 ~------------------------~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
. ...+|+ .|.+.++. +....+..+.++++|+.|+++.|.
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK-ELALDTNQ----LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEE-EEECCSSC----CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhccccceeeecCCCcccccCccccCCCccc-EEECCCCc----eeecCHhHhcccccccEEEccCCc
Confidence 1 122455 66665543 222233446778889999988765
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=3.2e-12 Score=117.73 Aligned_cols=167 Identities=18% Similarity=0.228 Sum_probs=129.3
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
...++.+.+..+.+.... .+.++++|+.|.+..+.- ... ..+..+++|++|++++|.+..+|. +..+
T Consensus 62 l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~L~~n~l-------~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL-------KNV--SAIAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp CTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCC-------SCC--GGGTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred cCCCCEEEccCCcCCCCh---hHccCCCCCEEEccCCcC-------CCc--hhhcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 456788888777665533 377889999999987751 112 247889999999999999988876 8899
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL 358 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 358 (404)
++|++|++++|.+..++. +..+++|++|++++| .+..+|. +.++++|+.|++.. +....+..+..+++|
T Consensus 129 ~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L 197 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADD---NKISDISPLASLPNL 197 (308)
T ss_dssp TTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS---SCCCCCGGGGGCTTC
T ss_pred CCCCEEECCCCccCcCcc------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCC---CccCcChhhcCCCCC
Confidence 999999999999987653 889999999999999 7778876 88899999996543 333344557888899
Q ss_pred ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+ .|.+.++.- .... .+..+++|+.|+++.|.
T Consensus 198 ~-~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 198 I-EVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp C-EEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred C-EEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence 9 899987643 2222 27889999999999875
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=128.34 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=121.2
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|.+..+|.. +.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI-------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc-------cCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 4567888888887765532 2456788999999987765 3345566788899999999999999888765 68
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSL 355 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L 355 (404)
.+++|++|++++|.+..++. ..+.++++|++|++++| .+..+ |..++++++|++|++..+... ......+.++
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l 175 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175 (477)
T ss_dssp TCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTC
T ss_pred CCCCCCEEECCCCccccCCh----hHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-ccChhHhccc
Confidence 88999999999998876543 25788888888888888 44444 445888888888865433221 1112235666
Q ss_pred cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
++|+ .|.+.++.. ....+..+..+++|+.|+++.+
T Consensus 176 ~~L~-~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 176 HGLI-VLRLRHLNI----NAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TTCC-EEEEESCCC----CEECTTCSCSCTTCCEEEEECC
T ss_pred CCCc-EEeCCCCcC----cEeChhhcccCcccceeeCCCC
Confidence 6676 676665432 1222334555666666666544
No 23
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=3.5e-12 Score=116.51 Aligned_cols=165 Identities=20% Similarity=0.245 Sum_probs=122.2
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH 280 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~ 280 (404)
.++.+.+..+.+.. .+.+..+++|+.|.+..+. .....+ +.++++|++|++++|.+..+|. +..+++
T Consensus 47 ~L~~L~l~~~~i~~---~~~~~~l~~L~~L~L~~n~-------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 47 SIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNK-------LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp TCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred cccEEEccCCCccc---ChhHhcCCCCCEEEccCCc-------cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 45566665554433 3456778899999988765 222222 7889999999999999988665 889999
Q ss_pred cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301 281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE 360 (404)
Q Consensus 281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 360 (404)
|++|++++|.+..++ .+..+++|++|++++| .+..+ ..++.+++|++|++..+ ....+..+..+++|+
T Consensus 114 L~~L~L~~n~i~~~~------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N---~l~~~~~l~~l~~L~- 181 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN---QISDIVPLAGLTKLQ- 181 (291)
T ss_dssp CCEEECTTSCCCCCG------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS---CCCCCGGGTTCTTCC-
T ss_pred CCEEECCCCcCCCCh------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC---ccccchhhcCCCccC-
Confidence 999999999988764 3889999999999998 67777 46888899999965433 223333478888888
Q ss_pred ceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 361 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.|.+.++.- ..+ + .+..+++|+.|+++.|.
T Consensus 182 ~L~L~~N~i-~~l----~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 182 NLYLSKNHI-SDL----R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSSCC-CBC----G-GGTTCTTCSEEEEEEEE
T ss_pred EEECCCCcC-CCC----h-hhccCCCCCEEECcCCc
Confidence 888887542 222 2 37888999999998875
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.1e-12 Score=118.94 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=128.2
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH 280 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~ 280 (404)
.++.+.+..+.+.. ++.+..+++|+.|.+..+. .....+ +..+++|++|++++|.+..+| .+..+++
T Consensus 42 ~L~~L~l~~~~i~~---l~~~~~l~~L~~L~L~~n~-------i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 42 GITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQ-------ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp TCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred CcCEEEeeCCCccC---chhhhccCCCCEEEccCCc-------CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 46666665554433 4467788999999998775 222333 889999999999999999876 6899999
Q ss_pred cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301 281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE 360 (404)
Q Consensus 281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 360 (404)
|++|++++|.+..++. +..+++|++|++++| .+..+|. ++.+++|+.|++..+ ....+..+..+++|+
T Consensus 109 L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n---~l~~~~~l~~l~~L~- 176 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP------LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA---QVSDLTPLANLSKLT- 176 (308)
T ss_dssp CCEEECTTSCCCCCGG------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS---CCCCCGGGTTCTTCC-
T ss_pred CCEEECCCCCCCCchh------hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC---cCCCChhhcCCCCCC-
Confidence 9999999999987652 899999999999999 7788876 888999999965433 333344588889999
Q ss_pred ceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 361 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
.|.+.++.- ...+. +..+++|+.|+++.|.-
T Consensus 177 ~L~l~~n~l-~~~~~-----l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 177 TLKADDNKI-SDISP-----LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EEECCSSCC-CCCGG-----GGGCTTCCEEECTTSCC
T ss_pred EEECCCCcc-CcChh-----hcCCCCCCEEEccCCcc
Confidence 999987643 23222 77889999999988763
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=4.4e-13 Score=125.94 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=124.6
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.|+.|.+.++. ...++...+.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+|.. .+
T Consensus 52 ~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNR-------ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WF 120 (353)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH----HH
T ss_pred ccCcEEECCCCc-------CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh----Hh
Confidence 589999998765 33455667899999999999999999764 5699999999999999999976642 48
Q ss_pred cccccCceeecCCCCccccccc--cccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL 381 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l 381 (404)
+++++|++|++++| .+..+|. .++++++|++|++..+..........+..+++|+ .|.+.++. +....+..+
T Consensus 121 ~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~l 194 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDASD----LQSYEPKSL 194 (353)
T ss_dssp TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT----CCEECTTTT
T ss_pred CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCCCC----cCccCHHHH
Confidence 89999999999999 7888987 5899999999977654322222335678888999 99998754 234456678
Q ss_pred cCccCCCceEEEecCC
Q 046301 382 NGKEKLEALSLKWVNS 397 (404)
Q Consensus 382 ~~l~~L~~L~l~~~~~ 397 (404)
.++++|+.|+++.|.-
T Consensus 195 ~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 195 KSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCSEEEEEEEECSCS
T ss_pred hccccCCeecCCCCcc
Confidence 8999999999998863
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.37 E-value=1e-12 Score=130.82 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=139.9
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE 277 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~ 277 (404)
+..++.+.+..+.+.... ...+.++++|++|.+..+. ....++..|.++++|++|++++|.+..+|+. ++.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR-------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC-------cCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 467888998888765532 3467889999999998876 3455667789999999999999999988776 999
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCcccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLM 356 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 356 (404)
+++|++|++++|.+..++ .|..++++++|++|++++|..+..+|. .++++++|++|++..+... ...+..+.+++
T Consensus 97 l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~ 172 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIR 172 (549)
T ss_dssp CTTCCEEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCS
T ss_pred CCCCcEEECCCCcccccc---hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccc
Confidence 999999999999998553 234599999999999999966788874 6999999999977654332 23455678888
Q ss_pred ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
+|+ .|.+.++.. ...+.. .+..+++|+.|+++.|.-
T Consensus 173 ~L~-~L~l~~n~~-~~~~~~---~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 173 DIH-HLTLHLSES-AFLLEI---FADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEE-EEEEECSBS-TTHHHH---HHHSTTTBSEEEEESCBC
T ss_pred cCc-eEecccCcc-cccchh---hHhhcccccEEEccCCcc
Confidence 888 888877553 233332 234578889999987753
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.37 E-value=1.7e-12 Score=118.45 Aligned_cols=153 Identities=22% Similarity=0.168 Sum_probs=120.0
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~ 304 (404)
+.++.|.+.++. .....+..|.++++|++|++++|.+..+|.. +.+++|++|++++|.+..+|.. +.
T Consensus 31 ~~l~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-----~~ 97 (290)
T 1p9a_G 31 KDTTILHLSENL-------LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLL-----GQ 97 (290)
T ss_dssp TTCCEEECTTSC-------CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCC-----TT
T ss_pred CCCCEEEcCCCc-------CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchh-----hc
Confidence 678899888766 3445567789999999999999999988775 7899999999999999977754 89
Q ss_pred ccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccC
Q 046301 305 NLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG 383 (404)
Q Consensus 305 ~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 383 (404)
.+++|++|++++| .+..+|. .+.++++|++|++..+... ......+..+++|+ .|.+.++.- . ...+..+.+
T Consensus 98 ~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~---~l~~~~~~~ 170 (290)
T 1p9a_G 98 TLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE-KLSLANNNL-T---ELPAGLLNG 170 (290)
T ss_dssp TCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC-EEECTTSCC-S---CCCTTTTTT
T ss_pred cCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCC-EEECCCCcC-C---ccCHHHhcC
Confidence 9999999999999 7788875 4899999999965433222 11223467888999 999987542 2 333345678
Q ss_pred ccCCCceEEEecCC
Q 046301 384 KEKLEALSLKWVNS 397 (404)
Q Consensus 384 l~~L~~L~l~~~~~ 397 (404)
+++|+.|+|+.|.-
T Consensus 171 l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 171 LENLDTLLLQENSL 184 (290)
T ss_dssp CTTCCEEECCSSCC
T ss_pred cCCCCEEECCCCcC
Confidence 99999999988863
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=4.8e-12 Score=113.80 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=108.1
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
.+..+++|+.|.+.++. ...+. .+..+++|++|++++|.+..+|+ +..+++|++|++++|.++.+|.
T Consensus 36 ~~~~l~~L~~L~l~~n~-------i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~--- 102 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-------IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG--- 102 (263)
T ss_dssp CHHHHTTCSEEECTTSC-------CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT---
T ss_pred chhhcCcCcEEECcCCC-------cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc---
Confidence 45567888888887765 11222 47778889999999998888877 8888899999999998887764
Q ss_pred CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
+.. ++|++|++++| .+..+| .++++++|++|++. .+....+..+..+++|+ .|.+.++.- ... .
T Consensus 103 ---~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls---~N~i~~~~~l~~l~~L~-~L~L~~N~i-~~~-----~ 166 (263)
T 1xeu_A 103 ---IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIR---NNKLKSIVMLGFLSKLE-VLDLHGNEI-TNT-----G 166 (263)
T ss_dssp ---CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECT---TSCCCBCGGGGGCTTCC-EEECTTSCC-CBC-----T
T ss_pred ---ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECC---CCcCCCChHHccCCCCC-EEECCCCcC-cch-----H
Confidence 223 88899999888 677776 58888888888543 33333445677788888 888877543 222 4
Q ss_pred cccCccCCCceEEEecC
Q 046301 380 QLNGKEKLEALSLKWVN 396 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~~~ 396 (404)
.+..+++|+.|+++.|.
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 57788889999988775
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=3e-12 Score=114.32 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=119.5
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. .....+..|.++++|++|++++|.+..+++ .+..+++|++|++++|.+..+|.. .+
T Consensus 35 ~~l~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 103 (251)
T 3m19_A 35 ADTEKLDLQSTG-------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG----VF 103 (251)
T ss_dssp TTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TT
T ss_pred CCCCEEEccCCC-------cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh----Hh
Confidence 578889888766 344556678899999999999999987655 478999999999999999977743 57
Q ss_pred cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 382 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~ 382 (404)
..+++|++|++++| .+..+|.. +.++++|++|++..+... ......+..+++|+ .|.+.++.- ....+..+.
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~ 176 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ-TLSLSTNQL----QSVPHGAFD 176 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCC----SCCCTTTTT
T ss_pred cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCC-EEECCCCcC----CccCHHHHh
Confidence 89999999999999 78888876 688999999966543322 11223578888999 999987542 233345678
Q ss_pred CccCCCceEEEecC
Q 046301 383 GKEKLEALSLKWVN 396 (404)
Q Consensus 383 ~l~~L~~L~l~~~~ 396 (404)
.+++|+.|+++.|.
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 88999999998876
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.3e-12 Score=116.39 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=119.9
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. ...+++..|.++++|++|++++|.+..+|..+ ..+++|++|++++|.+..+|.. .+
T Consensus 37 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNK-------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG----VF 105 (270)
T ss_dssp TTCSEEECCSSC-------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCCEEECcCCC-------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh----Hc
Confidence 578999887765 33455667899999999999999999888765 7899999999999999987753 57
Q ss_pred cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 382 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~ 382 (404)
..+++|++|++++| .+..+|.. ++.+++|++|++..+... ......+..+++|+ .|.+.++.- ....+..+.
T Consensus 106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~~~ 178 (270)
T 2o6q_A 106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK-ELRLYNNQL----KRVPEGAFD 178 (270)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCC----SCCCTTTTT
T ss_pred ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccc-eeEecCCcC----cEeChhHhc
Confidence 89999999999999 67777654 789999999966543322 11222377889999 999987542 233334578
Q ss_pred CccCCCceEEEecC
Q 046301 383 GKEKLEALSLKWVN 396 (404)
Q Consensus 383 ~l~~L~~L~l~~~~ 396 (404)
++++|+.|+++.|.
T Consensus 179 ~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 179 KLTELKTLKLDNNQ 192 (270)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCcCEEECCCCc
Confidence 89999999999885
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=9.6e-13 Score=119.02 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=120.0
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE 277 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~ 277 (404)
...++.+.+..+.+.. ++.+.++++|+.|.+.++. ....++..+.++++|++|++++|.+..+|+. ++.
T Consensus 62 l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQ-------LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp CTTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCc-------cCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 4567888887776654 3567789999999998875 3455666788999999999999999987765 789
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM 356 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 356 (404)
+++|++|++++|.+..+|.. .++.+++|++|++++| .+..+|.. ++++++|++|++..+... ......+..++
T Consensus 132 l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 205 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 205 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred CCCCCEEECCCCccCccCHH----HhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCc
Confidence 99999999999999977653 4689999999999999 67777765 689999999966544332 22223478888
Q ss_pred ccccceEEcCCC
Q 046301 357 HLQEKLTISGLE 368 (404)
Q Consensus 357 ~L~~~L~l~~~~ 368 (404)
+|+ .|.+.++.
T Consensus 206 ~L~-~L~l~~N~ 216 (272)
T 3rfs_A 206 SLQ-YIWLHDNP 216 (272)
T ss_dssp TCC-EEECCSSC
T ss_pred CCC-EEEccCCC
Confidence 999 89988754
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=1.7e-12 Score=123.63 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=69.2
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L 278 (404)
..++.+.+..+.+..+.. ..+.++++|+.|.+.++. ...+++..|..+++|++|++++|.+..+|+ .++.+
T Consensus 45 ~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEecCCchhhCCh-hHhcccccCcEEECCCCc-------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 455666666554433221 123456667777666544 223334456666666666666666665533 35666
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAK 338 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~ 338 (404)
++|++|++++|.+..+|.. .+.++++|++|++++| .+..++ ..++++++|++|++
T Consensus 117 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEEC
Confidence 6666666666666655533 2355666666666665 344443 23555556655543
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=1.4e-12 Score=131.43 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=106.8
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|.+..+ |..++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE-------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc-------ccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4567888988887765533 2357789999999998765 3455667789999999999999999876 78899
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCceEe
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVV 341 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~ 341 (404)
.+++|++|++++|.+..++.. .++++++|++|++++| .+. .+|..++++++|++|++..+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 999999999999999877743 4899999999999998 454 57888999999999966543
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=1.5e-12 Score=126.53 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=88.9
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-c-----
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-D----- 274 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~----- 274 (404)
.++.|.+..+.+..+. ...+.++++|+.|.+..+. ...+++..|..+++|++|++++|.+..+|. .
T Consensus 100 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred CCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 4455555554443321 1234455555555555443 223333445555555555555555554433 2
Q ss_pred --------------------cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccc
Q 046301 275 --------------------IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSL 333 (404)
Q Consensus 275 --------------------~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L 333 (404)
+..+++|++|++++|.+..+| .+..+++|++|++++| .+..+ |..+.++++|
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSL 244 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTC
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCC-cCcccCcccccCccCC
Confidence 445555555555555555443 2556666666666666 33333 4446666666
Q ss_pred cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+.|.+..+... ......+..+++|+ .|++.++.- ....+..+..+++|+.|+|+.|.
T Consensus 245 ~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQVS-LIERNAFDGLASLV-ELNLAHNNL----SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCCcCc-eECHHHhcCCCCCC-EEECCCCcC----CccChHHhccccCCCEEEccCCC
Confidence 66644322111 11223455666666 677765422 22223445666777777776554
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=1.8e-12 Score=134.34 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=26.4
Q ss_pred ccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 349 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 349 ~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+.++++++.|+ .|.++++. +.+.+|..+.++++|+.|+|++|.
T Consensus 649 p~~l~~l~~L~-~L~Ls~N~----l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 649 PKEIGSMPYLF-ILNLGHND----ISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CHHHhccccCC-EEeCcCCc----cCCCCChHHhCCCCCCEEECCCCc
Confidence 34556666666 66665533 334455567777777777777765
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.7e-12 Score=109.29 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=71.5
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL 330 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 330 (404)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|. .++.+++|++|++++|......|..++++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-----CCTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-----hhcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 555666666666666554443 46666666666666666653 222 36666666666666663222345556666
Q ss_pred ccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 331 TSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 331 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
++|++|++..+.. ...++.+..+++|+ .|.+.++.- ..++ .+..+++|+.|+++.|.
T Consensus 136 ~~L~~L~L~~n~~--i~~~~~l~~l~~L~-~L~l~~n~i-~~~~-----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 136 PKVNSIDLSYNGA--ITDIMPLKTLPELK-SLNIQFDGV-HDYR-----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEECCSCTB--CCCCGGGGGCSSCC-EEECTTBCC-CCCT-----TGGGCSSCCEEEECBC-
T ss_pred CCCCEEEccCCCC--ccccHhhcCCCCCC-EEECCCCCC-cChH-----HhccCCCCCEEEeeCcc
Confidence 6666664432220 22233555666666 666655432 2211 35566777777776654
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=125.38 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=71.1
Q ss_pred hhccCccccEEEecCCC-ccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc
Q 046301 251 VVPRLRQLRVVSLCGYK-IVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI 327 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~-~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~ 327 (404)
.|.++++|++|++++|. +..+|. .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+ |..+
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~ 227 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------LTPLIKLDELDLSGN-HLSAIRPGSF 227 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC------CTTCSSCCEEECTTS-CCCEECTTTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc------cCCCcccCEEECCCC-ccCccChhhh
Confidence 34444444444444422 333332 34555566666666666555542 566666777777666 44444 4456
Q ss_pred cccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 328 GKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 328 ~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.++++|+.|.+..+... ......+..+++|+ .|++.++.- ....+..+..+++|+.|+|+.|.
T Consensus 228 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV-EINLAHNNL----TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCC-EECTTSSTTCTTCC-EEECTTSCC----CCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCcee-EEChhhhcCCCCCC-EEECCCCCC----CccChhHhccccCCCEEEcCCCC
Confidence 66666666644322211 11223456667777 777766432 22233446667778888777654
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.33 E-value=1.9e-12 Score=131.25 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=71.3
Q ss_pred cCccccEEEecCCCccccCcccc-cCCCcceEecCCCCcccCCCCCCCc---cccccccCceeecCCCCcccccccccc-
Q 046301 254 RLRQLRVVSLCGYKIVQLPNDIA-ELKHLRYLDFSHTAIEVLPESKLFP---DVGNLVNLRHLKDSHSNLLEEMPLRIG- 328 (404)
Q Consensus 254 ~l~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~~~l~~lp~~~~p~---~~~~l~~L~~L~l~~~~~l~~lp~~~~- 328 (404)
.+.+|++|++++|.+..+|..+. .+++|++|++++|.+..+|...... .+.++++|++|++++| .+..+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhh
Confidence 44566666666666666665543 3666666666666666555431110 0122236666666665 4556665554
Q ss_pred -ccccccccCceEeccCCcCCccccccccccccceEEcCCC--CCCCHhHHHhccccCccCCCceEEEecC
Q 046301 329 -KLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE--NVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 329 -~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.+++|+.|++..+.... .+..+.++++|+ .|.++++. ..+.+.+.+|..+..+++|+.|+|+.|.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~-~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK--FPTQPLNSSTLK-GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TTCTTCCEEECCSSCCSS--CCCGGGGCSSCC-EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred ccCCCcCEEECCCCCCCC--cChhhhcCCCCC-EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 56666666443322221 234455555565 56554432 1122233344455556666666665554
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=9.8e-13 Score=109.86 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=87.6
Q ss_pred CccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc-ccccccccc
Q 046301 255 LRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE-MPLRIGKLT 331 (404)
Q Consensus 255 l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~ 331 (404)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ . .+..+++|++|++++| .+.. +|..+++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSEN-RIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESC-CCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCC-cCchHHHHHHhhCC
Confidence 366777777777776 6777777777777777777777755 2 3777777777777777 4444 565566677
Q ss_pred cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCCCCC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTTSS 401 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 401 (404)
+|++|++..+.......+..+..+++|+ .|.+.++.- ...+......+..+++|+.|+++.+......
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLK-SLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCC-EEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCC-EEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777755433322211224566777777 777766432 1222212235777888888888888654443
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=1.3e-12 Score=132.22 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=93.4
Q ss_pred ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-c
Q 046301 197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-I 275 (404)
Q Consensus 197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~ 275 (404)
.+|.+++.|.+..+.+..+. ...+.++++|+.|.+..+. ...+++..|.++++|++|+|++|+++.+|+. +
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 34567788888777665533 2356778888888887765 3445566778888888888888888877754 6
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCce
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKF 339 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~ 339 (404)
..|++|++|++++|+++.+|.. .++++++|++|++++| .+. .+|..++++++|++|++.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC
T ss_pred cCCCCCCEEECCCCcCCCCChh----hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhccc
Confidence 7788888888888888776643 4778888888888887 444 346667778888888554
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.31 E-value=1.9e-12 Score=117.17 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=103.9
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+.++. ...+.+..|.++++|++|++++|.+..+++ .+..+++|++|++++|.+..++.. .+
T Consensus 28 ~~l~~L~ls~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AF 96 (276)
T ss_dssp TTCCEEECTTCC-------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TT
T ss_pred CCccEEECCCCc-------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh----hh
Confidence 468999987765 334455578899999999999999997765 789999999999999999877632 58
Q ss_pred cccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
.++++|++|++++| .+..++. .++++++|++|++..+.......+..+..+++|+ .|.+.++.
T Consensus 97 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~ 160 (276)
T 2z62_A 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNK 160 (276)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSC
T ss_pred cCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCC
Confidence 99999999999999 6666665 5999999999966544332222356788899999 89988754
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.31 E-value=4e-12 Score=118.22 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
+..++.+.+..+.+.... ...+.++++|+.|.+..+. .....+..|.++++|++|++++|.+..+|..+.
T Consensus 51 ~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-- 120 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNK-------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-- 120 (330)
T ss_dssp CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred CCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCc-------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence 345666766666554432 1245667777777776654 223345556777777777777777666665443
Q ss_pred CCcceEecCCCCcc
Q 046301 279 KHLRYLDFSHTAIE 292 (404)
Q Consensus 279 ~~L~~L~l~~~~l~ 292 (404)
++|++|++++|.+.
T Consensus 121 ~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 121 KTLQELRVHENEIT 134 (330)
T ss_dssp TTCCEEECCSSCCC
T ss_pred ccccEEECCCCccc
Confidence 34444444444443
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=5.8e-12 Score=126.78 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
+..+++|+.|.+..+. ....++..|.++++|++|++++|.+..+|+.+ +.+++|++|++++|.+..++.
T Consensus 95 ~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 164 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNA-------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--- 164 (597)
T ss_dssp TTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---
T ss_pred hcCCCCCCEEECCCCc-------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh---
Confidence 3444455555544433 22233334445555555555555555444442 445555555555555443332
Q ss_pred CccccccccCceeecCCC
Q 046301 300 FPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~ 317 (404)
..++++++|++|++++|
T Consensus 165 -~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 165 -DTFQATTSLQNLQLSSN 181 (597)
T ss_dssp -TTTTTCTTCCEEECTTS
T ss_pred -hhhhcCCcCcEEECcCC
Confidence 13444555555555544
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=4.9e-12 Score=111.99 Aligned_cols=180 Identities=11% Similarity=0.167 Sum_probs=119.0
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecC-CCccccCc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCG-YKIVQLPN-DI 275 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~~ 275 (404)
++..++.+.+..+.+..+.. ..+.++++|+.|.+..+. ....+.+..|.++++|++|++++ |.+..+|+ .+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDV------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCS------SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCC------CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 45578888888877665432 346678888888887763 12344455678888888888888 88887764 57
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCc---eeecCCCCcccccccc-cccccccc-ccCceEeccCCcCCcc
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR---HLKDSHSNLLEEMPLR-IGKLTSLR-TLAKFVVGKGNCYGLK 350 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~---~L~l~~~~~l~~lp~~-~~~l~~L~-~L~~~~~~~~~~~~~~ 350 (404)
..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|.. +.++++|+ +|++..+... ....
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~ 173 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQG 173 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECT
T ss_pred CCCCCCCEEeCCCCCCccccc------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCH
Confidence 788888888888888886653 66667776 8888887567777654 77888888 8754322211 1111
Q ss_pred ccccccccccceEEcCCCCCCCHhHHHhccccCc-cCCCceEEEecC
Q 046301 351 ELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-EKLEALSLKWVN 396 (404)
Q Consensus 351 ~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 396 (404)
..-..++|+ .|.+.++.++. ...+..+.++ ++|+.|+++.|.
T Consensus 174 ~~~~~~~L~-~L~L~~n~~l~---~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 174 YAFNGTKLD-AVYLNKNKYLT---VIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTTCEEE-EEECTTCTTCC---EECTTTTTTCSBCCSEEECTTCC
T ss_pred hhcCCCCCC-EEEcCCCCCcc---cCCHHHhhccccCCcEEECCCCc
Confidence 111225677 77777653232 2223456677 788888887765
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.30 E-value=1.7e-12 Score=129.22 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=123.9
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.|+.|.+.++. .....+..|.++++|++|++++|.+..+| ..++.+++|++|++++|.+..+|. ..+
T Consensus 26 ~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNK-------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS----SWF 94 (549)
T ss_dssp TTCCEEECCSSC-------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH----HHH
T ss_pred CCccEEECcCCc-------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH----HHh
Confidence 689999998875 33445567899999999999999998765 679999999999999999987653 259
Q ss_pred cccccCceeecCCCCccc--cccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301 304 GNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL 381 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l 381 (404)
+++++|++|++++| .+. ..|..++++++|++|++..+..........+..+++|+ .|.+.++. +....+..+
T Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~l 168 (549)
T 2z81_A 95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALS----LRNYQSQSL 168 (549)
T ss_dssp TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT----CCEECTTTT
T ss_pred ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCc----ccccChhhh
Confidence 99999999999999 566 45677999999999977655422222234678889999 99998754 334456778
Q ss_pred cCccCCCceEEEecC
Q 046301 382 NGKEKLEALSLKWVN 396 (404)
Q Consensus 382 ~~l~~L~~L~l~~~~ 396 (404)
..+++|+.|+++++.
T Consensus 169 ~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 169 KSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCSEEEEEEEECSB
T ss_pred hccccCceEecccCc
Confidence 899999999998875
No 46
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=8.1e-12 Score=125.24 Aligned_cols=164 Identities=21% Similarity=0.238 Sum_probs=114.8
Q ss_pred cceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCc
Q 046301 202 LRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHL 281 (404)
Q Consensus 202 ~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L 281 (404)
++.|.+..+.+.. ++.+..+++|+.|.+..+. ...+++ +..+++|+.|+|++|.+..+| .+..+++|
T Consensus 45 L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~-------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 45 IDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNK-------LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp CCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSC-------CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred CCEEECcCCCCCC---ChHHccCCCCCEEEeeCCC-------CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 4444444443332 3456778888888887765 222222 778888999999988888766 68888889
Q ss_pred ceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccc
Q 046301 282 RYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEK 361 (404)
Q Consensus 282 ~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 361 (404)
+.|+|++|.+..++ .+..+++|+.|+|++| .+..+ ..++.+++|+.|++..+.. ..+..+..+++|+ .
T Consensus 112 ~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~ 179 (605)
T 1m9s_A 112 KSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQ-N 179 (605)
T ss_dssp CEEECTTSCCCCCG------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCC---CCCGGGTTCTTCC-E
T ss_pred CEEEecCCCCCCCc------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcC---CCchhhccCCCCC-E
Confidence 99999988888654 3888888999999888 66776 4588888888886543322 2333377888888 8
Q ss_pred eEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 362 LTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 362 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|.+.++.- ..+ ..+..+++|+.|+|+.|.
T Consensus 180 L~Ls~N~i-~~l-----~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKNHI-SDL-----RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCC-CBC-----GGGTTCTTCSEEECCSEE
T ss_pred EECcCCCC-CCC-----hHHccCCCCCEEEccCCc
Confidence 88877542 222 247788888888888764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=8.8e-12 Score=115.99 Aligned_cols=105 Identities=13% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
+..++.+.+..+.+.... ...+.++++|+.|.+..+. .....+..|.++++|++|++++|.+..+|..+.
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 122 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-- 122 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence 345667777666554322 2345677777777776654 233445567777777777777777776666554
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
++|++|++++|.+..+|.. .+.++++|++|++++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSC
T ss_pred ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCC
Confidence 5566666666655544432 2334444444444443
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=7e-12 Score=110.27 Aligned_cols=129 Identities=23% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.|+.|.+.++. ...+.+..|..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. .+
T Consensus 40 ~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQ-------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA----VF 108 (229)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCCEEEcCCCc-------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh----Hh
Confidence 455555555543 2233344455566666666666666655533 35566666666666666554432 24
Q ss_pred cccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL 367 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~ 367 (404)
..+++|++|++++| .+..+|..+.++++|++|++..+.... .....+..+++|+ .|.+.++
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~l~~N 169 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT-HAYLFGN 169 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC-EEECTTS
T ss_pred CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC-EEEeeCC
Confidence 55666666666665 455666556666666666443222111 1112345555555 5555543
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=2.3e-12 Score=133.93 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cc--ccCcccccCC-------CcceEecCCCCcc
Q 046301 223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IV--QLPNDIAELK-------HLRYLDFSHTAIE 292 (404)
Q Consensus 223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~lp~~~~~L~-------~L~~L~l~~~~l~ 292 (404)
++++|+.|.+..+. .....+..+.++++|++|++++|. +. .+|..++.+. +|++|++++|.+.
T Consensus 489 ~L~~L~~L~Ls~N~-------l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCP-------NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GCTTCCEEEEESCT-------TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCC-------CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 56666666665543 112223445555555555555554 44 2454444443 5555555555555
Q ss_pred cCCCCCCCccccccccCceeecCCCCccccccccccccccccccCc
Q 046301 293 VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 338 (404)
Q Consensus 293 ~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~ 338 (404)
.+|.. ..++++++|++|++++| .+..+| .++++++|+.|++
T Consensus 562 ~ip~~---~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 562 EFPAS---ASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp BCCCH---HHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEEC
T ss_pred ccCCh---hhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEEC
Confidence 44430 02555555555555555 333555 4555555555533
No 50
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=1.1e-11 Score=113.21 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=118.7
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
....++.|+.|.+..+. ...+ ..+..+++|++|++++|.+..+++ +..+++|++|++++|.+..+|
T Consensus 41 ~~~~l~~L~~L~l~~~~-------i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~---- 106 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSD-------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS---- 106 (291)
T ss_dssp CHHHHHTCCEEECTTSC-------CCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG----
T ss_pred chhhcCcccEEEccCCC-------cccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh----
Confidence 34567889999887765 1122 237889999999999999998887 999999999999999998765
Q ss_pred CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
.+..+++|++|++++| .+..+| .+..+++|+.|++.. +....+..+..+++|+ .|.+.++.- .... +
T Consensus 107 --~l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L~-~L~L~~N~l-~~~~---~- 173 (291)
T 1h6t_A 107 --SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGN---NKITDITVLSRLTKLD-TLSLEDNQI-SDIV---P- 173 (291)
T ss_dssp --GGTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCS---SCCCCCGGGGGCTTCS-EEECCSSCC-CCCG---G-
T ss_pred --hhccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccC---CcCCcchhhccCCCCC-EEEccCCcc-ccch---h-
Confidence 3899999999999999 677775 688999999996543 3333456788899999 999987643 2222 2
Q ss_pred cccCccCCCceEEEecC
Q 046301 380 QLNGKEKLEALSLKWVN 396 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~~~ 396 (404)
+..+++|+.|+++.|.
T Consensus 174 -l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -GTTCTTCCEEECCSSC
T ss_pred -hcCCCccCEEECCCCc
Confidence 7889999999998885
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.29 E-value=4e-12 Score=127.04 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=125.5
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|+.|.+..+. ...+.+..|.++++|++|++++|.+..+| ..++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc-------CCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 4567888988887765543 2357789999999998875 34455677899999999999999998765 6789
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCceEeccCCcCCcccccc
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRS 354 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 354 (404)
.+++|++|++++|.++.+|.. .++++++|++|++++| .+. .+|..++++++|++|++..+... ......+..
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 171 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTC----SCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred CccccccccccccccccCCCc----cccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence 999999999999999988753 3889999999999998 455 47888999999999965433221 112234555
Q ss_pred cccc----ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 355 LMHL----QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 355 L~~L----~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+++| . .+.+.++.. ....+..+..+ +|+.|+++.+
T Consensus 172 l~~L~~~~~-~L~l~~n~l----~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 172 LHQMPLLNL-SLDLSLNPM----NFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp HHTCTTCCC-EEECTTCCC----CEECTTTTTTC-EEEEEEEESC
T ss_pred hhccchhhh-hcccCCCCc----eecCHHHhccC-cceeEecccc
Confidence 5555 4 555554321 12222233333 4666665544
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=1.8e-11 Score=104.95 Aligned_cols=147 Identities=14% Similarity=0.244 Sum_probs=115.2
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L 278 (404)
..++.+.+..+.+.. ++.+..+++|+.|.+..+.- .. ...+..+++|++|++++|.+.. .|..++.+
T Consensus 44 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~~-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 44 NSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHA-------TN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCCC-------SC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred CCccEEeccCCCccC---hHHHhcCCCCCEEEccCCCC-------Cc--chhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 357778888776654 34677889999999987741 11 1257889999999999999984 78899999
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL 358 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 358 (404)
++|++|++++|.+... .|..++.+++|++|++++|..+..+| .+..+++|++|++..+ ....+..+..+++|
T Consensus 112 ~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n---~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD---GVHDYRGIEDFPKL 183 (197)
T ss_dssp TTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB---CCCCCTTGGGCSSC
T ss_pred CCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC---CCcChHHhccCCCC
Confidence 9999999999998852 23458999999999999995588887 6899999999965433 33344577888889
Q ss_pred ccceEEcCC
Q 046301 359 QEKLTISGL 367 (404)
Q Consensus 359 ~~~L~l~~~ 367 (404)
+ .|.+.+.
T Consensus 184 ~-~L~l~~N 191 (197)
T 4ezg_A 184 N-QLYAFSQ 191 (197)
T ss_dssp C-EEEECBC
T ss_pred C-EEEeeCc
Confidence 8 8999764
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=4.4e-12 Score=128.56 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=87.7
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccch-hhhhhhccC------ccccEEEecCCCcccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNN-LVFHVVPRL------RQLRVVSLCGYKIVQL 271 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~~~~~~~l------~~L~~L~l~~~~~~~l 271 (404)
...++.+.+..+.+.. ..+..+.++++|+.|.+..+. ...+ ..+..+..+ ++|++|++++|.+..+
T Consensus 248 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNR------GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp CTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCT------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred cCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCC------CCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 3567888888876554 223567789999999988764 1222 344445554 8899999999998888
Q ss_pred Cc--ccccCCCcceEecCCCCcc-cCCCCCCCccccccccCceeecCCCCcccccccccccccc-ccccCc
Q 046301 272 PN--DIAELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTS-LRTLAK 338 (404)
Q Consensus 272 p~--~~~~L~~L~~L~l~~~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~-L~~L~~ 338 (404)
|. .++.+++|++|++++|.+. .+| . ++++++|++|++++| .+..+|..++++++ |++|++
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~-----~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-A-----FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-C-----CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEEC
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-h-----hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEc
Confidence 88 8899999999999999888 776 4 555566666666555 44455555555555 555543
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=123.54 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=121.4
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. ...+.+..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. .+
T Consensus 32 ~~l~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNR-------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VF 100 (477)
T ss_dssp TTCSEEECCSSC-------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SS
T ss_pred CCCcEEECCCCc-------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cc
Confidence 578899988765 3445567799999999999999999866 77899999999999999999988754 47
Q ss_pred cccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG 383 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 383 (404)
.++++|++|++++|......|..+.++++|++|++..+... ......+..+++|+ .|.+.++.- . ...+..+.+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l-~---~~~~~~l~~ 174 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEKCNL-T---SIPTEALSH 174 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCC-EEEEESCCC-S---SCCHHHHTT
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCC-EEECCCCcC-c---ccChhHhcc
Confidence 89999999999999444444667999999999965433221 12234678889999 999988643 2 223345778
Q ss_pred ccCCCceEEEecCC
Q 046301 384 KEKLEALSLKWVNS 397 (404)
Q Consensus 384 l~~L~~L~l~~~~~ 397 (404)
+++|+.|+++.+.-
T Consensus 175 l~~L~~L~l~~n~i 188 (477)
T 2id5_A 175 LHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTCCEEEEESCCC
T ss_pred cCCCcEEeCCCCcC
Confidence 89999999998763
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=3.9e-12 Score=116.97 Aligned_cols=176 Identities=20% Similarity=0.146 Sum_probs=117.5
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhh-hhhccCccccEEEecCCCccc-cCccccc
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVF-HVVPRLRQLRVVSLCGYKIVQ-LPNDIAE 277 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-lp~~~~~ 277 (404)
..++.+.+..+.+..+ ...+..+++|+.|.+..+. ...... ..+..+++|++|++++|.+.. .|..+..
T Consensus 78 ~~L~~L~Ls~n~i~~l--~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 78 TSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSN-------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp SCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSE-------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccCEEECCCCccccC--hhhcCCCCCCCEEECCCCc-------ccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3455666555544332 1235667788888776654 122222 457788888888888888874 4556778
Q ss_pred CCCcceEecCCCCccc--CCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCcccccc
Q 046301 278 LKHLRYLDFSHTAIEV--LPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRS 354 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~--lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 354 (404)
+++|++|++++|.+.. +|. .+..+++|++|++++| .+..+ |..++++++|++|++..+... ......+..
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 221 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC 221 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECS-----CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTT
T ss_pred CcCCCEEECCCCccccccchh-----HHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccC
Confidence 8888888888888764 443 4888999999999988 55555 566888888988855433221 112234677
Q ss_pred ccccccceEEcCCCCCCCHhHHHhccccCc-cCCCceEEEecC
Q 046301 355 LMHLQEKLTISGLENVNDAEDAKEAQLNGK-EKLEALSLKWVN 396 (404)
Q Consensus 355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 396 (404)
+++|+ .|+++++. +.+..+..+..+ ++|+.|+++.|.
T Consensus 222 l~~L~-~L~L~~N~----l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQ-VLDYSLNH----IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCC-EEECTTSC----CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCC-EeECCCCC----CcccCHHHHHhhhccCCEEEccCCC
Confidence 88888 88887754 233445566777 489999987765
No 56
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=108.17 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=92.6
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE 277 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~ 277 (404)
+..++.+.+..+.+........+.+++.|+.|.+..+. ...+.+..|.++++|++|++++|.+..+|+. +..
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 44566777777766554333345678888888887665 3344555678888888888888888876654 778
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceE
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFV 340 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~ 340 (404)
+++|++|++++|.+..++. ..+..+++|++|++++| .+..+ |..+..+++|++|++..
T Consensus 104 l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecC
Confidence 8888888888888886642 24778888888888888 55555 56688888888885543
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.27 E-value=7.7e-12 Score=121.50 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=94.6
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~ 276 (404)
.+..++.+.+..+.+.... ...+.++++|+.|.+..+. ....+.+..|.++++|++|++++|.+..+ |..++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccCcCC-hhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 4567888888887765532 3457788999999887765 22344456688889999999999988855 77888
Q ss_pred cCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCccccc-ccc-ccccccccccCceE
Q 046301 277 ELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLR-IGKLTSLRTLAKFV 340 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~-~~~l~~L~~L~~~~ 340 (404)
.+++|++|++++|.+.. .|.. ..+.++++|++|++++| .+..+ |.. ++++++|++|++..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHS---STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CcccCCEEeCCCCCCCccccCc---ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCC
Confidence 89999999999988874 2211 12777888888888887 45544 544 67778888775543
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.27 E-value=3.2e-12 Score=128.89 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=106.8
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+.++. ...+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+..++ |..+
T Consensus 32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS----PGSF 100 (606)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC----TTSS
T ss_pred CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC----hhhc
Confidence 789999998876 3455666799999999999999999976 567899999999999999998763 2359
Q ss_pred cccccCceeecCCCCcccccc-ccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
+++++|++|++++| .+..+| ..++++++|++|++..+.......+..+.++++|+ .|++.++.
T Consensus 101 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~ 164 (606)
T 3vq2_A 101 SGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNY 164 (606)
T ss_dssp TTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSC
T ss_pred CCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCc
Confidence 99999999999999 676666 66999999999976544333223456788999999 89887753
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=4.5e-11 Score=111.78 Aligned_cols=168 Identities=19% Similarity=0.182 Sum_probs=88.0
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
.+++.+.+..+.+... +.+.++++|+.|.+..+.- ... ..+..+++|++|++++|.+..+|. +..++
T Consensus 66 ~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~L~~n~i-------~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI-------TDI--SALQNLTNLRELYLNEDNISDISP-LANLT 132 (347)
T ss_dssp TTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCC-------CCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred CCccEEEccCCccccc---hhhhcCCcCCEEEccCCcc-------cCc--hHHcCCCcCCEEECcCCcccCchh-hccCC
Confidence 3455555554443332 2245555566665554430 111 135555666666666666555554 55566
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ 359 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 359 (404)
+|++|++++|.....+ +.+..+++|++|++++| .+..++. +..+++|++|++. .+....+..+..+++|+
T Consensus 133 ~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~---~n~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLN---YNQIEDISPLASLTSLH 202 (347)
T ss_dssp TCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECT---TSCCCCCGGGGGCTTCC
T ss_pred ceeEEECCCCCCcccc-----cchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEcc---CCcccccccccCCCccc
Confidence 6666666665322111 12666666666666666 4555543 5566666666433 22222333455666666
Q ss_pred cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
.|.+.++.. ..... +..+++|+.|++++|.-
T Consensus 203 -~L~l~~n~l-~~~~~-----~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 203 -YFTAYVNQI-TDITP-----VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp -EEECCSSCC-CCCGG-----GGGCTTCCEEECCSSCC
T ss_pred -eeecccCCC-CCCch-----hhcCCcCCEEEccCCcc
Confidence 666665432 11111 66778888888877753
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=1.3e-11 Score=124.13 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=100.1
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L 278 (404)
.+++.+.+..+.+..+. ...+.+++.|+.|.+..+. ...+++..|..+++|++|++++|.+..+|+. ++.+
T Consensus 51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCC-------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 45667777665544432 1235678999999998765 3455666789999999999999999977654 6999
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCceEe
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVV 341 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~ 341 (404)
++|++|++++|.+..+|.. .++++++|++|++++| .+..+| ..++++++|++|++..+
T Consensus 123 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC
Confidence 9999999999999987754 3589999999999999 555555 46999999999966533
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=1.6e-11 Score=125.57 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=116.3
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~ 276 (404)
++..++.+.+..+.+.... ...+.++++|++|.+..+. .....+..|.++++|++|++++|.+..+|+ .++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 4567899999888766543 2457788999999998765 344556778999999999999999998887 599
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccc--c
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELR--S 354 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~--~ 354 (404)
.+++|++|++++|.+..+|.. .++++++|++|++++|......|..++++++|++|++..+... ......+. .
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 169 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFA 169 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGT
T ss_pred cCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccc
Confidence 999999999999999877643 5899999999999999444444556889999999965433221 11112222 3
Q ss_pred ccccccceEEcCC
Q 046301 355 LMHLQEKLTISGL 367 (404)
Q Consensus 355 L~~L~~~L~l~~~ 367 (404)
+++|+ .|.+.++
T Consensus 170 ~~~L~-~L~L~~n 181 (680)
T 1ziw_A 170 NSSLK-KLELSSN 181 (680)
T ss_dssp TCEES-EEECTTC
T ss_pred ccccc-EEECCCC
Confidence 46777 7777665
No 62
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=1e-11 Score=107.38 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L 278 (404)
..++.+.+..+.+.... ...+.++++|+.|.+..+. ...++...|..+++|++|++++|.+..+|.. +..+
T Consensus 28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNK-------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCc-------cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 45556666555544321 1223455666666665543 2233344455666666666666666655543 4566
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 338 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~ 338 (404)
++|++|++++|.+..+|.. .+..+++|++|++++| .+..+|.. +.++++|++|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEe
Confidence 6666666666666654432 3455666666666666 45555543 555666666633
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.24 E-value=7.3e-12 Score=126.59 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=102.4
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. ...+++..|.++++|++|+|++|.|..+|+ .|..|++|++|+|++|+++.+|.. .+
T Consensus 52 ~~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AF 120 (635)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GG
T ss_pred cCCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----Hh
Confidence 478889888765 455667778999999999999999998865 588999999999999999987753 57
Q ss_pred cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCC
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL 367 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~ 367 (404)
.++++|++|++++| .+..+|.. ++++++|++|++..+.......+..+..+++|+ .|.+.++
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N 183 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSN 183 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSS
T ss_pred cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh-hhcccCc
Confidence 89999999999998 67778764 899999999976544333233345567788888 8888764
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=8e-12 Score=109.20 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=97.9
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+.++. ...+++..|..+++|++|++++|.+..+ |..+..+++|++|+|++|.++.+|.. .+
T Consensus 32 ~~l~~L~l~~n~-------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS----LF 100 (220)
T ss_dssp TTCCEEECCSSC-------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT----TT
T ss_pred cCCCEEECCCCc-------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh----Hc
Confidence 578888887765 3345556788899999999999999866 77889999999999999999977754 46
Q ss_pred cccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 304 GNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
..+++|++|++++| .+..+ |..+..+++|++|++..+.... .....+..+++|+ .|.+.++.
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQ-TMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC-EEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCC-EEEeCCCC
Confidence 78999999999998 56666 4558888999998665433221 1223467778888 88887643
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=121.82 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. ....++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.++.+|. .
T Consensus 21 ~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~- 87 (520)
T 2z7x_B 21 QKTTILNISQNY-------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-----H- 87 (520)
T ss_dssp TTCSEEECCSSC-------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-----C-
T ss_pred ccccEEECCCCc-------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-----c-
Confidence 455555554443 2223334455555555555555555543 4455555555555555555554442 1
Q ss_pred cccccCceeecCCCCcccc--ccccccccccccccCce
Q 046301 304 GNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKF 339 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~ 339 (404)
.+++|++|++++| .+.. +|..++++++|++|++.
T Consensus 88 -~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 88 -PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp -CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEE
T ss_pred -ccCCccEEeccCC-ccccccchhhhccCCcceEEEec
Confidence 4555555555555 2332 34445555555555443
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.24 E-value=2e-11 Score=127.75 Aligned_cols=182 Identities=18% Similarity=0.099 Sum_probs=135.2
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~ 276 (404)
.+..++.|.+..+.+.... ...+.++++|+.|.+..+. ....+.+..|.++++|++|++++|.+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 6788999999988776542 3567889999999998864 23445567799999999999999999865 88899
Q ss_pred cCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCcccccc--ccccccccccccCceEeccCCcCCccccc
Q 046301 277 ELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGNCYGLKELR 353 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 353 (404)
.+++|++|++++|.+.. +|.. ..++++++|++|++++| .+..++ ..++++++|++|++..+... ......+.
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~---~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~ 169 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKD---GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELE 169 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTT---CCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGH
T ss_pred CCcccCEeeCcCCCCCcccccC---ccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC-eeCHHHcc
Confidence 99999999999999875 3321 23889999999999999 555543 46899999999966543222 22345566
Q ss_pred cc--cccccceEEcCCCCCCCHhHHHhccccCccC------CCceEEEecC
Q 046301 354 SL--MHLQEKLTISGLENVNDAEDAKEAQLNGKEK------LEALSLKWVN 396 (404)
Q Consensus 354 ~L--~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~ 396 (404)
.+ ++|+ .|.+.++... ...+..+..+.+ |+.|+++.|.
T Consensus 170 ~l~~~~L~-~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 170 PLQGKTLS-FFSLAANSLY----SRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp HHHHCSSC-CCEECCSBSC----CCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccCCccc-eEECCCCccc----cccccchhhcCCccccCceeEEecCCCc
Confidence 66 7888 8888775432 223334444444 9999998875
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=127.05 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=111.8
Q ss_pred CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc-CcccccCCCcceEecCCCCcccCCCCCCC
Q 046301 223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
-.+.++.|.+..+. ...+.+..|.++++|++|++++|. +..+ |..++++++|++|+|++|.+..++ |
T Consensus 22 lp~~l~~LdLs~N~-------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~----p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH----P 90 (844)
T ss_dssp SCTTCCEEEEESCC-------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC----T
T ss_pred CCCCcCEEECCCCc-------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC----H
Confidence 44788888887765 334555678889999999999885 4456 677888999999999999888653 2
Q ss_pred ccccccccCceeecCCCCcccccccc--ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHh
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKE 378 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~ 378 (404)
..++++++|++|++++|.....+|.. ++++++|++|++..+..........+.++++|+ .|.+.++... ...+
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~----~~~~ 165 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIF----LVCE 165 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCC----CCCS
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCC----eeCH
Confidence 35889999999999988433445655 888889999876654433222224678888888 8888875422 2222
Q ss_pred ccccCc--cCCCceEEEecC
Q 046301 379 AQLNGK--EKLEALSLKWVN 396 (404)
Q Consensus 379 ~~l~~l--~~L~~L~l~~~~ 396 (404)
..+..+ ++|+.|+++.|.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSB
T ss_pred HHcccccCCccceEECCCCc
Confidence 334444 688888888775
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=3e-11 Score=117.25 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=41.4
Q ss_pred ccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
..++++++|++|++++| .+..+ |..++++++|++|++..+... ......+..+++|+ .|+++++. +....+.
T Consensus 293 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~ 365 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLE-VLDLSYNH----IRALGDQ 365 (455)
T ss_dssp TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCC-EEECCSSC----CCEECTT
T ss_pred hhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCC-EEECCCCc----ccccChh
Confidence 34555566666666665 33333 334556666666644322111 11123344555555 55555432 1222334
Q ss_pred cccCccCCCceEEEecC
Q 046301 380 QLNGKEKLEALSLKWVN 396 (404)
Q Consensus 380 ~l~~l~~L~~L~l~~~~ 396 (404)
.+.++++|+.|+++.|.
T Consensus 366 ~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred hccccccccEEECCCCc
Confidence 45555555555555543
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=5.3e-12 Score=131.16 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=122.2
Q ss_pred ccccCCCCccEEEecccCccccc----------cccchhhhhhhc--cCccccEEEecCCCcc-ccCcccccCCCcceEe
Q 046301 219 EGLHKVEYLRTFLALLLGTRKTF----------YVTNNLVFHVVP--RLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLD 285 (404)
Q Consensus 219 ~~~~~~~~L~~L~~~~~~~~~~~----------~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~ 285 (404)
..+.++++|+.|.+..+.-.... ....+..+..+. ++++|++|++++|.+. .+|..++.|++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 45778999999999887611100 000012445555 9999999999999965 8899999999999999
Q ss_pred cCCCC-ccc--CCCCCCCccccccc-------cCceeecCCCCccccccc--cccccccccccCceEeccCCcCCccccc
Q 046301 286 FSHTA-IEV--LPESKLFPDVGNLV-------NLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCYGLKELR 353 (404)
Q Consensus 286 l~~~~-l~~--lp~~~~p~~~~~l~-------~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 353 (404)
+++|+ +.. +|. .+++++ +|++|++++| .+..+|. .++++++|++|++..+.. ..++.+.
T Consensus 522 Ls~N~~lsg~~iP~-----~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l---~~lp~~~ 592 (876)
T 4ecn_A 522 IACNRGISAAQLKA-----DWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV---RHLEAFG 592 (876)
T ss_dssp CTTCTTSCHHHHHH-----HHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC---CBCCCCC
T ss_pred CcCCCCcccccchH-----HHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc---ccchhhc
Confidence 99997 773 554 477666 9999999999 6779999 899999999996643322 2444788
Q ss_pred cccccccceEEcCCCCCCCHhHHHhccccCccC-CCceEEEecC
Q 046301 354 SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEK-LEALSLKWVN 396 (404)
Q Consensus 354 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~ 396 (404)
.+++|+ .|.+.++... .+|..+.++++ |+.|+|+.|.
T Consensus 593 ~L~~L~-~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 593 TNVKLT-DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TTSEES-EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSC
T ss_pred CCCcce-EEECcCCccc-----cchHHHhhccccCCEEECcCCC
Confidence 888888 8888775431 34556778888 8888888775
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.24 E-value=9.8e-13 Score=122.56 Aligned_cols=182 Identities=15% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCC-Ccc--ccCcccc
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGY-KIV--QLPNDIA 276 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~ 276 (404)
.+++.+.+..+.+........+..+++|+.|.+.++. .....+..+..+++|++|++++| .++ .+|..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 3455555554433221112234556667777666543 22233444556666666666666 454 2555566
Q ss_pred cCCCcceEecCCC-CcccCCCCCCCccccccc-cCceeecCCCC-cc--ccccccccccccccccCceEeccCCcCCccc
Q 046301 277 ELKHLRYLDFSHT-AIEVLPESKLFPDVGNLV-NLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKFVVGKGNCYGLKE 351 (404)
Q Consensus 277 ~L~~L~~L~l~~~-~l~~lp~~~~p~~~~~l~-~L~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~ 351 (404)
.+++|++|++++| .+... .+|..+..++ +|++|++++|. .+ ..+|..+.++++|++|++..+.......+..
T Consensus 166 ~~~~L~~L~l~~~~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HCTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred cCCCCCEEcCCCCCCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 6666666666666 55521 0122355666 66666666652 11 3445445556666666443332111223345
Q ss_pred cccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 352 LRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 352 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+.++++|+ .|.+.++.... ......+.++++|+.|+++.+
T Consensus 243 l~~l~~L~-~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQ-HLSLSRCYDII---PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCC-EEECTTCTTCC---GGGGGGGGGCTTCCEEECTTS
T ss_pred HhCCCCCC-EeeCCCCCCCC---HHHHHHHhcCCCCCEEeccCc
Confidence 55556666 66665554211 111123455566666666544
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.23 E-value=1.9e-11 Score=116.41 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=106.7
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
..+++++.+.+.++. ...++...+..+++|++|++++|.+..+|+ .+..+++|++|++++|.+..+|..
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH--- 111 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH---
Confidence 356889999887754 445666778999999999999999997764 899999999999999999977643
Q ss_pred ccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
.++++++|++|++++| .+..+|.. ++++++|++|++..+... ......+..+++|+ .|.+.++.
T Consensus 112 -~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~ 176 (390)
T 3o6n_A 112 -VFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNR 176 (390)
T ss_dssp -TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCC-EEECCSSC
T ss_pred -HhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCC-EEECCCCc
Confidence 5899999999999999 78899987 589999999966543322 22234578888898 89987754
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.6e-12 Score=106.29 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=81.9
Q ss_pred cCccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc-cccccccc
Q 046301 254 RLRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE-MPLRIGKL 330 (404)
Q Consensus 254 ~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l 330 (404)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ . .++++++|++|++++| .+.. +|..++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-----NLPKLNKLKKLELSDN-RVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-----TCCCCTTCCEEECCSS-CCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-----hhhcCCCCCEEECCCC-cccchHHHHhhhC
Confidence 3466778888888777 6777777778888888888877765 2 3777788888888777 4444 66666667
Q ss_pred ccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301 331 TSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL 392 (404)
Q Consensus 331 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 392 (404)
++|++|++..+.......+..+..+++|+ .|.+.++.- ...+......+..+++|+.|++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLK-SLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCC-EEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCC-EEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 77777754433221111124566777777 777766432 1112111134666777777765
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=2.4e-11 Score=106.78 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=107.6
Q ss_pred ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-c
Q 046301 197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-I 275 (404)
Q Consensus 197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~ 275 (404)
.++.+++.+.+..+.+.... ...+.++++|+.|.+..+. ...++...|..+++|++|++++|.+..+|+. +
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-------CCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 34577889999888776642 2456788999999998876 3455666789999999999999999988765 6
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV 340 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~ 340 (404)
..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|.+..
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRG-----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTT-----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcchhhCeEeccCCcccccCcc-----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 8899999999999999977765 999999999999999 78888754 88899999986543
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.23 E-value=1.6e-11 Score=123.69 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=56.3
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcc-cccC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPND-IAEL 278 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~-~~~L 278 (404)
.++.+.+..+.+..+ ...+.++++|+.|.+..+. .....+..+..+++|++|++++|.+. .+|.. +..+
T Consensus 279 ~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 279 GLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANK-------FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TCSEEECTTSCCSCC--CSSCCSCTTCCEEECTTCC-------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CCCEEeccCCccCCC--ChhhcccccCCEEECccCC-------cCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 455555555444322 1234556666666665544 12223334455555555555555544 33332 4455
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 336 (404)
++|++|++++|.+..++. .|..+..+++|++|++++|......|..++++++|++|
T Consensus 350 ~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 555555555555443320 01224444444444444442222223334444444444
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.22 E-value=5e-11 Score=111.49 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=77.0
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
+..+++|+.|.+..+.- ..... +..++.|++|++++|.+..++. +..+++|++|++++|.+..++.
T Consensus 173 ~~~l~~L~~L~l~~n~l-------~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~---- 238 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQI-------EDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP---- 238 (347)
T ss_dssp GGGCTTCSEEECTTSCC-------CCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG----
T ss_pred hccCCCCCEEEccCCcc-------ccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc----
Confidence 44556666666555431 11111 4455555555555555554444 5555666666666665554431
Q ss_pred ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ 380 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 380 (404)
+..+++|++|++++| .+..+| .+..+++|++|++..+ ....++.+..+++|+ .|.+.++.- .+..+..
T Consensus 239 --~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n---~l~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~ 306 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN---QISDISVLNNLSQLN-SLFLNNNQL----GNEDMEV 306 (347)
T ss_dssp --GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS---CCCCCGGGGGCTTCS-EEECCSSCC----CGGGHHH
T ss_pred --hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC---ccCCChhhcCCCCCC-EEECcCCcC----CCcChhH
Confidence 556666666666665 444443 3555566666643322 222234455555666 666655432 2233334
Q ss_pred ccCccCCCceEEEecC
Q 046301 381 LNGKEKLEALSLKWVN 396 (404)
Q Consensus 381 l~~l~~L~~L~l~~~~ 396 (404)
+.++++|+.|+++.|.
T Consensus 307 l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHTCTTCSEEECCSSS
T ss_pred hhccccCCEEEccCCc
Confidence 5556666666666554
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=122.58 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=75.2
Q ss_pred hhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCC---------------------CCCccccccccC
Q 046301 251 VVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES---------------------KLFPDVGNLVNL 309 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~---------------------~~p~~~~~l~~L 309 (404)
.+..+++|++|++++|.+..+|+.+..+++|++|++++|.+...+.. ..|..+..+++|
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 35556666666666666665555555666666666666555433220 122345566666
Q ss_pred ceeecCCCCcc-ccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCC
Q 046301 310 RHLKDSHSNLL-EEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLE 388 (404)
Q Consensus 310 ~~L~l~~~~~l-~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 388 (404)
++|++++|... ..+|..++.+++|++|++..+... ...+..+.++++|+ .|.+.++.- .+..+..+.++++|+
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ-VLNMASNQL----KSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCTTTTTTCTTCC
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccc-cCChhhhhcccCCC-EEeCCCCcC----CCCCHHHhhcccCCc
Confidence 66666666222 245656666666666644322111 11233456666666 666665432 222334466677777
Q ss_pred ceEEEecC
Q 046301 389 ALSLKWVN 396 (404)
Q Consensus 389 ~L~l~~~~ 396 (404)
.|+++.|.
T Consensus 522 ~L~l~~N~ 529 (570)
T 2z63_A 522 KIWLHTNP 529 (570)
T ss_dssp EEECCSSC
T ss_pred EEEecCCc
Confidence 77776664
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=2.8e-11 Score=121.34 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=117.6
Q ss_pred ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF 300 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p 300 (404)
...++.|+.|.+..+. ...+ ..+..+++|+.|+|++|.+..+|+ +..+++|+.|+|++|.+..+|
T Consensus 39 ~~~L~~L~~L~l~~n~-------i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS----- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------CCCC--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-----
T ss_pred hhcCCCCCEEECcCCC-------CCCC--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-----
Confidence 4567778888776654 1122 247889999999999999998887 999999999999999998765
Q ss_pred ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301 301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ 380 (404)
Q Consensus 301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 380 (404)
.+..+++|++|++++| .+..+| .+..+++|+.|++..+ ....+..+..+++|+ .|.+.++.. . +..+
T Consensus 104 -~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N---~l~~l~~l~~l~~L~-~L~Ls~N~l-~---~~~~-- 170 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN---KITDITVLSRLTKLD-TLSLEDNQI-S---DIVP-- 170 (605)
T ss_dssp -TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS---CCCCCGGGGSCTTCS-EEECCSSCC-C---CCGG--
T ss_pred -hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC---ccCCchhhcccCCCC-EEECcCCcC-C---Cchh--
Confidence 3899999999999999 677775 5889999999966533 333457788999999 999987653 2 2222
Q ss_pred ccCccCCCceEEEecC
Q 046301 381 LNGKEKLEALSLKWVN 396 (404)
Q Consensus 381 l~~l~~L~~L~l~~~~ 396 (404)
+..+++|+.|+|+.|.
T Consensus 171 l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEECcCCC
Confidence 7889999999998875
No 78
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=108.10 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=91.8
Q ss_pred CCccEEEecccCccccccccchh-hhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNL-VFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPD 302 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~ 302 (404)
..++.|.+..+. .... +...|..+++|++|++++|.++.+++ .+..+++|++|++++|.+..++.. .
T Consensus 32 ~~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 100 (220)
T 2v70_A 32 QYTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK----M 100 (220)
T ss_dssp TTCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG----G
T ss_pred CCCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh----H
Confidence 355777777655 2222 23457788889999999998887765 688888999999999988876643 5
Q ss_pred ccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 303 VGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
+..+++|++|++++| .+..+ |..+..+++|++|++..+... ...+..+..+++|+ .|.+.++.
T Consensus 101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLS-TLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCC-EEECCSCC
T ss_pred hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCC-EEEecCcC
Confidence 788889999999888 55555 566888888888855433221 12234577778888 78877643
No 79
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=4.5e-11 Score=104.40 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=105.9
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA 276 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~ 276 (404)
++..++.+.+..+.+..+. ...+..+++|+.|.+..+. ...+.+..|.++++|++|++++|.+..+|+. +.
T Consensus 30 l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQ-------ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSC-------CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCc-------CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 4467888988888776543 2356788999999998876 3455567799999999999999999998876 57
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV 340 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~ 340 (404)
.+++|++|++++|.+..++. ..+..+++|++|++++| .+..+|.. +..+++|+.|++..
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCC
Confidence 89999999999999997754 36889999999999999 67777764 88899999986543
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=3.2e-11 Score=100.52 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=78.6
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCccccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAE 277 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~ 277 (404)
+..++.+.+..+.+........+..+++|+.|.+..+. .... ..+..+++|++|++++|.+.. +|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 34566666666655411111223566777777776654 1111 446667777777777777765 5555556
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccCceEe
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLAKFVV 341 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~~~~~ 341 (404)
+++|++|++++|.++.+|. +..+..+++|++|++++| .+..+|. .+..+++|++|++..+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7777777777777766542 123667777777777777 5666665 4666777777755443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=2e-11 Score=108.07 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=127.5
Q ss_pred CCCcceEEEEecc-CccccccccccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCccccCcccc
Q 046301 199 SRNLRHLSYLTSQ-FDGIKRFEGLHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIA 276 (404)
Q Consensus 199 ~~~~r~l~~~~~~-~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~ 276 (404)
...++.+.+..+. +..+. ...+.++++|+.|.+.+ +. ...+++..|.++++|++|++++|.+..+|. +.
T Consensus 54 l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~-------l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~ 124 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRN-------LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LT 124 (239)
T ss_dssp CTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETT-------CCEECTTSEECCTTCCEEEEEEECCCSCCC-CT
T ss_pred CCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCC-------eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cc
Confidence 3568888888875 54432 23567889999999987 44 334556678899999999999999999987 88
Q ss_pred cCCCcc---eEecCCC-CcccCCCCCCCccccccccCc-eeecCCCCccccccccccccccccccCceEeccCCcCCccc
Q 046301 277 ELKHLR---YLDFSHT-AIEVLPESKLFPDVGNLVNLR-HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKE 351 (404)
Q Consensus 277 ~L~~L~---~L~l~~~-~l~~lp~~~~p~~~~~l~~L~-~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~ 351 (404)
.+.+|+ +|++++| .+..+|.. .+..+++|+ +|++++| .+..+|......++|+.|++..+..........
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred cccccccccEEECCCCcchhhcCcc----cccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 888888 9999999 99987754 588999999 9999999 677898875555889999554331111112234
Q ss_pred cccc-cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEe
Q 046301 352 LRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394 (404)
Q Consensus 352 l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 394 (404)
+..+ ++|+ .|++.++. +..++ .. .+++|+.|.++.
T Consensus 200 ~~~l~~~L~-~L~l~~N~-l~~l~----~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 200 FGGVYSGPS-LLDVSQTS-VTALP----SK--GLEHLKELIARN 235 (239)
T ss_dssp TTTCSBCCS-EEECTTCC-CCCCC----CT--TCTTCSEEECTT
T ss_pred hhccccCCc-EEECCCCc-cccCC----hh--HhccCceeeccC
Confidence 6778 8899 89998743 22222 11 467888888753
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.20 E-value=7.7e-11 Score=109.45 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=62.3
Q ss_pred hhhhhccCccccEEEecCCCcc---ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-
Q 046301 248 VFHVVPRLRQLRVVSLCGYKIV---QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM- 323 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~~~~---~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l- 323 (404)
.+..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+..+|.. +. ++|++|++++| .+..+
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n-~l~~~~ 208 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-----LP--PSLTELHLDGN-KITKVD 208 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CC--TTCSEEECTTS-CCCEEC
T ss_pred CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-----cc--ccCCEEECCCC-cCCccC
Confidence 3444555666666666666554 2344555566666666666665555432 21 45555555555 23333
Q ss_pred cccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 324 PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 324 p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|..+.++++|++|++..+... ......+..+++|+ .|.+.++.- . .+|..+..+++|+.|+++.|.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~----~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR-ELHLNNNKL-V----KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCC-EEECCSSCC-S----SCCTTTTTCSSCCEEECCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCC-EEECCCCcC-c----cCChhhccCCCcCEEECCCCc
Confidence 334555555555533222111 01112344444555 555544321 1 223334455555555555443
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=1.1e-10 Score=113.85 Aligned_cols=126 Identities=20% Similarity=0.262 Sum_probs=75.2
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
+..+++|+.|++++|.+..+|+ +..+++|+.|++++|.+..++. ++.+++|++|++++| .+..++. ++.++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 331 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFN-NISDISP-VSSLT 331 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSS-CCSCCGG-GGGCT
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCC-cCCCchh-hccCc
Confidence 4555566666666666655554 5566666666666666654432 666777777777777 4554443 56667
Q ss_pred cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+|+.|++..+ ....+..+..+++|+ .|.+.++... +..+ +..+++|+.|+++.|.
T Consensus 332 ~L~~L~l~~n---~l~~~~~l~~l~~L~-~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 332 KLQRLFFYNN---KVSDVSSLANLTNIN-WLSAGHNQIS----DLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSCCC----BCGG--GTTCTTCCEEECCCEE
T ss_pred cCCEeECCCC---ccCCchhhccCCCCC-EEeCCCCccC----ccch--hhcCCCCCEEeccCCc
Confidence 7777744332 222335666777777 7777665432 2222 6677778888777654
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=4.5e-12 Score=116.98 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=113.5
Q ss_pred CCCcceEEEEeccCccccccccc--cCCCCccEEEecccCccccccccchhhhhhhccC-----ccccEEEecCCCcccc
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGL--HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-----RQLRVVSLCGYKIVQL 271 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l 271 (404)
...++.+.+..+.+.... ...+ ..+++|+.|.+..+. .... +..+..+ ++|++|++++|.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~-------l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLRNVS-------WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEESCB-------CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred cCCccEEEccCCcccchh-HHHHHHhcCCCccEEEccCCC-------Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 356788888887765422 1222 678888888887765 1222 2334444 7888888888888866
Q ss_pred C-cccccCCCcceEecCCCCcccCCCCCCCccc--cccccCceeecCCCCcccccc---cc-ccccccccccCceEeccC
Q 046301 272 P-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV--GNLVNLRHLKDSHSNLLEEMP---LR-IGKLTSLRTLAKFVVGKG 344 (404)
Q Consensus 272 p-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~--~~l~~L~~L~l~~~~~l~~lp---~~-~~~l~~L~~L~~~~~~~~ 344 (404)
| ..++.+++|++|++++|.+.... .+|..+ +.+++|++|++++| .+..+| .. +.++++|++|++..+...
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 5 67888888888888888754210 011123 78888888888888 566433 22 356678888855433322
Q ss_pred CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
.......+..+++|+ .|.++++.- . .+|..+. ++|+.|+++.|.-
T Consensus 242 ~~~~~~~~~~l~~L~-~L~Ls~N~l-~----~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLN-SLNLSFTGL-K----QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp SSCCCSCCCCCTTCC-EEECTTSCC-S----SCCSSCC--SEEEEEECCSSCC
T ss_pred cccchhhhhhcCCCC-EEECCCCcc-C----hhhhhcc--CCceEEECCCCCC
Confidence 211124455677888 888877542 2 2344444 6888899888763
No 85
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1e-11 Score=104.50 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=70.4
Q ss_pred ccccCCCCccEEEecccCccccccccchhhhhhhccCc-cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCC
Q 046301 219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLR-QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES 297 (404)
Q Consensus 219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~ 297 (404)
+.+.+++.|+.|.+.++.- ..+ +. +..+. +|++|++++|.+..+ +.++.+++|++|++++|.+..+|..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l-------~~i-~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI-------PVI-EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECTTSCC-------CSC-CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEeeCCCC-------chh-HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 3445667777777776651 111 22 33333 788888888877766 5677777888888888877766543
Q ss_pred CCCccccccccCceeecCCCCccccccc--cccccccccccCce
Q 046301 298 KLFPDVGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKF 339 (404)
Q Consensus 298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~ 339 (404)
.+..+++|++|++++| .+..+|. .++.+++|++|++.
T Consensus 83 ----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 83 ----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp ----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred ----hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEec
Confidence 2377788888888877 5677775 56777777777543
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=7.1e-11 Score=115.17 Aligned_cols=172 Identities=21% Similarity=0.284 Sum_probs=85.0
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..++.+.+..+.+.... .+.++++|+.|.+..+. .....+ +.++++|++|++++|.+..+|+ +..++
T Consensus 68 ~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~l~~n~-------l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQ-------IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred cCCCEEECCCCccCCch---hhhccccCCEEECCCCc-------cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 44555655555443322 25556666666665543 111222 5666666666666666666554 66666
Q ss_pred CcceEecCCCCcccCCCC---------------CCCccccccccCceeecCCCCccccccccccccccccccCceEeccC
Q 046301 280 HLRYLDFSHTAIEVLPES---------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG 344 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~---------------~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~ 344 (404)
+|++|++++|.+..++.- .....+.++++|++|++++| .+..++ .+.++++|++|.+..+
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n--- 209 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNN--- 209 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS---
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCC---
Confidence 666666666665544320 00011444455555555555 344443 2445555555533211
Q ss_pred CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
....+..+..+++|+ .|.+.++.. ... ..+..+++|+.|+++.|.
T Consensus 210 ~l~~~~~~~~l~~L~-~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 210 QISDITPLGILTNLD-ELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CCCCCGGGGGCTTCC-EEECCSSCC-CCC-----GGGGGCTTCSEEECCSSC
T ss_pred cccccccccccCCCC-EEECCCCCc-ccc-----hhhhcCCCCCEEECCCCc
Confidence 111222244455555 555555432 111 135556667777666554
No 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=4.3e-11 Score=120.56 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=34.1
Q ss_pred hccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL 330 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 330 (404)
+..+++|++|++++|.+..+ |..+..+++|++|++++|.+...+. +..+.++++|++|++++|......|..++.+
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 33444444444444444322 3334444444444444444432211 0124444555555555442222223334444
Q ss_pred ccccccC
Q 046301 331 TSLRTLA 337 (404)
Q Consensus 331 ~~L~~L~ 337 (404)
++|++|+
T Consensus 449 ~~L~~L~ 455 (606)
T 3t6q_A 449 PALQHLN 455 (606)
T ss_dssp TTCCEEE
T ss_pred CCCCEEE
Confidence 4555443
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=5.8e-11 Score=102.66 Aligned_cols=147 Identities=22% Similarity=0.182 Sum_probs=109.0
Q ss_pred CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCcc
Q 046301 224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPD 302 (404)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~ 302 (404)
.+.++.|.+.++. ...++...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+..+|.. .
T Consensus 27 ~~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNS-------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG----V 95 (208)
T ss_dssp CTTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----T
T ss_pred CCCCcEEEcCCCc-------cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh----H
Confidence 4688999988765 2345566788999999999999999988765 58899999999999999877643 4
Q ss_pred ccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301 303 VGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL 381 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l 381 (404)
+..+++|++|++++| .+..+|.. +.++++|++|++..+... ......+..+++|+ .|.+.++.. .
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~~-----------~ 161 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ-YIWLHDNPW-----------D 161 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSCCB-----------C
T ss_pred hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCcc-EEEecCCCe-----------e
Confidence 789999999999998 67777765 788999999966543222 11222367788888 888877532 2
Q ss_pred cCccCCCceEEEec
Q 046301 382 NGKEKLEALSLKWV 395 (404)
Q Consensus 382 ~~l~~L~~L~l~~~ 395 (404)
..+++|+.|+++.+
T Consensus 162 ~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 162 CTCPGIRYLSEWIN 175 (208)
T ss_dssp CCTTTTHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 34455666655544
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=1.6e-11 Score=120.27 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=47.5
Q ss_pred ccccCCCcceEecCCCCcccCCCCCCCcccc-ccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccc
Q 046301 274 DIAELKHLRYLDFSHTAIEVLPESKLFPDVG-NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKEL 352 (404)
Q Consensus 274 ~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l 352 (404)
.++.+++|++|++++|.+...+ |..+. .+++|++|++++| .+..+|. ...+++|++|++.++... ..+..+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N~l~--~~~~~~ 210 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSNKLA--FMGPEF 210 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSSCCC--EECGGG
T ss_pred hhcCCCCCCEEECCCCCCCCcC----hHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCCCCC--CCCHhH
Confidence 3444444444444444444321 11232 4455555555554 3444432 223445555533322111 122334
Q ss_pred ccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 353 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
..+++|+ .|+++++.- . .+|..+..+++|+.|+++.|.
T Consensus 211 ~~l~~L~-~L~Ls~N~l-~----~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 QSAAGVT-WISLRNNKL-V----LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGTTCS-EEECTTSCC-C----EECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCcc-EEEecCCcC-c----ccchhhccCCCCCEEEcCCCC
Confidence 5555555 566655322 1 133445556666666665543
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=7.1e-11 Score=114.75 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=125.0
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..++.+.+..+.+... +.+..+++|+.|.+..+. ...+ .+..+++|++|++++|.+..+| ++.++
T Consensus 42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~-------l~~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNN-------ITTL---DLSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSC-------CSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCc-------CCeE---ccccCCCCCEEECcCCCCceee--cCCCC
Confidence 5678888887766553 467888999999998875 1122 1788899999999999999875 88999
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ 359 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 359 (404)
+|++|++++|.++.+| ++++++|++|++++| .+..+| ++++++|++|++..+.. ...+ .+..+++|+
T Consensus 107 ~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~--~~~~-~~~~l~~L~ 173 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKK--ITKL-DVTPQTQLT 173 (457)
T ss_dssp TCCEEECCSSCCSCCC-------CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSC--CCCC-CCTTCTTCC
T ss_pred cCCEEECCCCcCCeec-------CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCc--cccc-ccccCCcCC
Confidence 9999999999998764 889999999999998 677775 78889999995543321 1122 577888898
Q ss_pred cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
.|++.++.- ..+ + +..+++|+.|+++.|.-
T Consensus 174 -~L~ls~n~l-~~l----~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 174 -TLDCSFNKI-TEL----D--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp -EEECCSSCC-CCC----C--CTTCTTCCEEECCSSCC
T ss_pred -EEECCCCcc-cee----c--cccCCCCCEEECcCCcC
Confidence 899987642 222 2 77889999999988763
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.18 E-value=1.5e-11 Score=113.35 Aligned_cols=177 Identities=17% Similarity=0.100 Sum_probs=125.2
Q ss_pred CCCcceEEEEeccCccccccccccCC-----CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKV-----EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ--- 270 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--- 270 (404)
...++.+.+..+.+... ...+..+ ++|+.|.+..+. ....++..|.++++|++|++++|.+..
T Consensus 120 l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAH-------SLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCS-------CCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred CCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCC-------CccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 46788999998877664 2333344 899999998876 345566778899999999999999753
Q ss_pred cCccc--ccCCCcceEecCCCCcccCCCCCCCc-cccccccCceeecCCCCcccccc--ccccccccccccCceEeccCC
Q 046301 271 LPNDI--AELKHLRYLDFSHTAIEVLPESKLFP-DVGNLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGN 345 (404)
Q Consensus 271 lp~~~--~~L~~L~~L~l~~~~l~~lp~~~~p~-~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~ 345 (404)
+|..+ +.+++|++|++++|.+..++. ++. .+.++++|++|++++| .+...+ ..+..+++|++|++..+...
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHH--HHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 45555 889999999999999885442 121 2357799999999999 565544 34667889999965433222
Q ss_pred cCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCC
Q 046301 346 CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNST 398 (404)
Q Consensus 346 ~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (404)
..+..+. ++|+ .|+++++.- ... |. +..+++|+.|+++.|.-.
T Consensus 267 -~ip~~~~--~~L~-~L~Ls~N~l-~~~----p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP--AKLS-VLDLSYNRL-DRN----PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC--SEEE-EEECCSSCC-CSC----CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc--CCce-EEECCCCCC-CCC----hh-HhhCCCCCEEeccCCCCC
Confidence 2223343 6788 888887542 222 33 788899999999877643
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.9e-11 Score=99.83 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=62.4
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccccCC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAELK 279 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~ 279 (404)
.++.+.+..+.+........+..+++|+.|.+..+. .... ..+..+++|++|++++|.+.. +|..+..++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 445555544443310111233455566666555543 1111 345555666666666666654 455555566
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccC
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLA 337 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~ 337 (404)
+|++|++++|.++.+|. |..++.+++|++|++++| .+..+|. .++.+++|+.|+
T Consensus 89 ~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 66666666666554331 123556666666666665 4555543 355555555554
No 93
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.8e-11 Score=125.64 Aligned_cols=106 Identities=23% Similarity=0.330 Sum_probs=73.7
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL 299 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~ 299 (404)
.+..++.|+.|.+..+. ...++.. +.++++|++|+|++|.+..+|..++.|++|++|+|++|.|+.+|..
T Consensus 219 ~~~~l~~L~~L~Ls~n~-------l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-- 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-------IFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-- 288 (727)
T ss_dssp ---CCCCCCEEECTTSC-------CSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--
T ss_pred hhccCCCCcEEECCCCC-------CCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--
Confidence 34566777777776655 1122222 3467778888888888777787788888888888888877766554
Q ss_pred CccccccccCceeecCCCCccccccccccccccccccCce
Q 046301 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339 (404)
Q Consensus 300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~ 339 (404)
+++|++|++|+|++| .+..+|.+|++|++|++|++.
T Consensus 289 ---~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 289 ---LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp ---GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred ---hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCC
Confidence 778888888888877 677777777778888877554
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.1e-10 Score=104.82 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=78.8
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH 280 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~ 280 (404)
.++.+.+..+.+.. ++.+..+++|+.|.+.++. ....++ +..+++|++|++++|.+..+|.... ++
T Consensus 42 ~L~~L~l~~n~i~~---l~~l~~l~~L~~L~L~~N~-------i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQ-------ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp TCSEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred cCcEEECcCCCccc---chHHhhCCCCCEEECCCCc-------cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 34555554444332 2345566677777766554 122222 6666777777777777666654333 66
Q ss_pred cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301 281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE 360 (404)
Q Consensus 281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 360 (404)
|++|++++|.++.++ .+..+++|++|++++| .+..+| .++.+++|++|++.. +....+..+..+++|+
T Consensus 108 L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~---N~i~~~~~l~~l~~L~- 175 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHG---NEITNTGGLTRLKKVN- 175 (263)
T ss_dssp CCEEECCSSCCSBSG------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTT---SCCCBCTTSTTCCCCC-
T ss_pred ccEEEccCCccCCCh------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCC---CcCcchHHhccCCCCC-
Confidence 777777777666543 2666677777777666 556665 466666666664432 2222224455555565
Q ss_pred ceEEcC
Q 046301 361 KLTISG 366 (404)
Q Consensus 361 ~L~l~~ 366 (404)
.|.+.+
T Consensus 176 ~L~l~~ 181 (263)
T 1xeu_A 176 WIDLTG 181 (263)
T ss_dssp EEEEEE
T ss_pred EEeCCC
Confidence 555544
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.16 E-value=4.9e-12 Score=117.78 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=122.8
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCC-CcccCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHT-AIEVLPES 297 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~-~l~~lp~~ 297 (404)
...++++|+.|.+..+. ......+..+..+++|++|++++|.+. ..|..++.+++|++|++++| .+...
T Consensus 88 ~~~~~~~L~~L~L~~~~------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--- 158 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--- 158 (336)
T ss_dssp SCCCCBCCCEEECTTCE------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---
T ss_pred hhccCCCCCEEEccCCC------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---
Confidence 35578999999998764 223335667899999999999999987 67888999999999999999 67631
Q ss_pred CCCccccccccCceeecCCCCcccc--ccccccccc-cccccCceEecc-CC-cCCccccccccccccceEEcCCCCCCC
Q 046301 298 KLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLT-SLRTLAKFVVGK-GN-CYGLKELRSLMHLQEKLTISGLENVND 372 (404)
Q Consensus 298 ~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~-~L~~L~~~~~~~-~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~ 372 (404)
.+|..+.++++|++|++++|..+.. +|..+..++ +|++|++..+.. .. ......+.++++|+ .|.+.++..+.
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~l~- 236 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-HLDLSDSVMLK- 236 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS-EEECTTCTTCC-
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC-EEeCCCCCcCC-
Confidence 1233488999999999999945553 677788899 999997654421 11 11233456788999 99998876332
Q ss_pred HhHHHhccccCccCCCceEEEecC
Q 046301 373 AEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+..+..+.++++|+.|++++|.
T Consensus 237 --~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 237 --NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp --GGGGGGGGGCTTCCEEECTTCT
T ss_pred --HHHHHHHhCCCCCCEeeCCCCC
Confidence 3344567889999999998885
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=4.7e-11 Score=119.29 Aligned_cols=82 Identities=29% Similarity=0.378 Sum_probs=39.1
Q ss_pred hhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc--c
Q 046301 249 FHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--L 325 (404)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~ 325 (404)
+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|. . .+++|++|++++| .+..+| .
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~--~l~~L~~L~Ls~N-~l~~l~~p~ 140 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-----C--PMASLRHLDLSFN-DFDVLPVCK 140 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-----C--CCTTCSEEECCSS-CCSBCCCCG
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-----c--ccccCCEEECCCC-CccccCchH
Confidence 33445555555555555555433 3344555555555555555554432 1 4455555555555 333332 3
Q ss_pred cccccccccccCc
Q 046301 326 RIGKLTSLRTLAK 338 (404)
Q Consensus 326 ~~~~l~~L~~L~~ 338 (404)
.++++++|++|++
T Consensus 141 ~~~~l~~L~~L~L 153 (562)
T 3a79_B 141 EFGNLTKLTFLGL 153 (562)
T ss_dssp GGGGCTTCCEEEE
T ss_pred hhcccCcccEEec
Confidence 4555555555533
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=8e-11 Score=116.35 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=104.6
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---cCcccccCCCcceEecCCCCccc-CCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ---LPNDIAELKHLRYLDFSHTAIEV-LPES 297 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~~~~L~~L~~L~l~~~~l~~-lp~~ 297 (404)
..++.|+.|.+..+. .....+..+..+++|++|++++|.+.. +|..++.+++|++|++++|.+.. +|..
T Consensus 321 ~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSC-------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCc-------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 466777788777655 223344567788888888888888774 45667888888888888888775 5542
Q ss_pred CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHH
Q 046301 298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAK 377 (404)
Q Consensus 298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~ 377 (404)
.+..+++|++|++++|.....+|..+. ++|++|++..+... ..+..+..+++|+ .|.+.++.- ..++.
T Consensus 394 ----~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~-~L~L~~N~l-~~l~~-- 461 (520)
T 2z7x_B 394 ----DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQ-ELNVASNQL-KSVPD-- 461 (520)
T ss_dssp ----SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCSSCC-CCCCT--
T ss_pred ----hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCC-EEECCCCcC-CccCH--
Confidence 366778888888888854456665554 57777755433222 2334466788888 888877542 22222
Q ss_pred hccccCccCCCceEEEecC
Q 046301 378 EAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~ 396 (404)
..+..+++|+.|+++.|.
T Consensus 462 -~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 -GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -TTTTTCTTCCEEECCSSC
T ss_pred -HHhccCCcccEEECcCCC
Confidence 237778889999888775
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=1e-10 Score=108.81 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=59.0
Q ss_pred hhccCccccEEEecCCCcc---ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-cc
Q 046301 251 VVPRLRQLRVVSLCGYKIV---QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LR 326 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~~~---~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~ 326 (404)
.|.++++|++|++++|.+. ..|..+..+ +|++|++++|.+..+|.. +. ++|++|++++| .+..++ ..
T Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n-~i~~~~~~~ 212 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-----LP--ETLNELHLDHN-KIQAIELED 212 (332)
T ss_dssp GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SC--SSCSCCBCCSS-CCCCCCTTS
T ss_pred HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-----cc--CCCCEEECCCC-cCCccCHHH
Confidence 3444455555555555443 123333333 444444444444443322 21 45555555555 333333 34
Q ss_pred ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+.++++|++|++..+... ......+..+++|+ .|.+.++.- . .+|..+..+++|+.|+++.|.
T Consensus 213 l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~----~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR-ELHLDNNKL-S----RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp STTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCC-EEECCSSCC-C----BCCTTGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCC-cCChhHhhCCCCCC-EEECCCCcC-e----ecChhhhcCccCCEEECCCCC
Confidence 555666666644322211 11112345555555 555554321 1 233345555666666665553
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=6.7e-11 Score=111.40 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=103.3
Q ss_pred cCCCcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-cc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DI 275 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~ 275 (404)
++..++.|.+..+.+..+.. ..+. ++++|+.|.+..+. ...+.+..|.++++|++|+|++|.+..+|+ .+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp CCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-------CCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 34557778777776655332 2233 78888888887765 344555668888888899998888887765 47
Q ss_pred ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc----cccccccccCceEeccCCcCCccc
Q 046301 276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI----GKLTSLRTLAKFVVGKGNCYGLKE 351 (404)
Q Consensus 276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~----~~l~~L~~L~~~~~~~~~~~~~~~ 351 (404)
..+++|++|+|++|.|..++. ..+..+++|++|++++| .+..+|..+ .++++|+.|++..+... ......
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 182 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHH
T ss_pred CCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHH
Confidence 788888889998888886643 25888888888888888 777888764 56778888855433221 111223
Q ss_pred cccccc--cccceEEcCC
Q 046301 352 LRSLMH--LQEKLTISGL 367 (404)
Q Consensus 352 l~~L~~--L~~~L~l~~~ 367 (404)
+..+.. ++ .|.+.++
T Consensus 183 ~~~l~~~~l~-~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKN-GLYLHNN 199 (361)
T ss_dssp HHHSCHHHHT-TEECCSS
T ss_pred hhhccHhhcc-eEEecCC
Confidence 444544 24 5666553
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=3e-10 Score=110.30 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..++.+.+..+.+..+ .+..+++|+.|.+..+. .... .+.++++|++|++++|.+..+| ++.++
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~-------l~~~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNK-------LTNL---DVTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSC-------CSCC---CCTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCC-------Ccee---ecCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 4456666665554442 14556666666666554 1111 1556666666666666666554 56666
Q ss_pred CcceEecCCCCcccCCCCCCC---------------ccccccccCceeecCCCCccccccccccccccccccCceEeccC
Q 046301 280 HLRYLDFSHTAIEVLPESKLF---------------PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG 344 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p---------------~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~ 344 (404)
+|++|++++|.++.++-..++ -.++.+++|++|++++| .+..+| ++.+++|+.|.+..+..
T Consensus 128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l- 203 (457)
T 3bz5_A 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNI- 203 (457)
T ss_dssp TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCC-
T ss_pred cCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcC-
Confidence 666666666666554311000 01445555666666555 455555 55555666664332211
Q ss_pred CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
..+ .+..+++|+ .|+++++.- .. ++ +..+++|+.|+++.|.
T Consensus 204 --~~~-~l~~l~~L~-~L~Ls~N~l-~~----ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 204 --TKL-DLNQNIQLT-FLDCSSNKL-TE----ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp --SCC-CCTTCTTCS-EEECCSSCC-SC----CC--CTTCTTCSEEECCSSC
T ss_pred --Cee-ccccCCCCC-EEECcCCcc-cc----cC--ccccCCCCEEEeeCCc
Confidence 122 356666777 777766432 22 22 6677888888887775
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=2.5e-11 Score=120.85 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=93.1
Q ss_pred cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336 (404)
Q Consensus 257 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 336 (404)
.|++|++++|.++.+|. ++.+++|++|++++|.++.+|.. ++++++|++|++++| .+..+| +++++++|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN-ALENVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh-----hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEE
Confidence 57889999999999887 99999999999999999877654 999999999999998 777888 79999999999
Q ss_pred CceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301 337 AKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL 392 (404)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 392 (404)
++..+.......+..+..|++|+ .|.+.++.- ...+......+..+++|+.|++
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLV-LLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCC-EEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCCCCCCCCCcHHHhcCCCCC-EEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 66544332211156788899999 899887532 1111111122334677887753
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=8.9e-11 Score=119.95 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=84.4
Q ss_pred hhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCc----cccccccCceeecCCCCccccc
Q 046301 249 FHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFP----DVGNLVNLRHLKDSHSNLLEEM 323 (404)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~----~~~~l~~L~~L~l~~~~~l~~l 323 (404)
+..+..+++|++|++++|.+..+|+. +..+++|++|++++|.+..++...+|. .+.++++|++|++++| .+..+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC
Confidence 34466667777777777777665543 666777777777777776655443332 2667777777777777 56677
Q ss_pred ccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc-CccCCCceEEEecC
Q 046301 324 PLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKEKLEALSLKWVN 396 (404)
Q Consensus 324 p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 396 (404)
|.. ++++++|++|++..+... ......+..+++|+ .|.+.++.- ... .+..+. .+++|+.|+++.|.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~-~L~L~~N~l-~~~---~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLK-SLNLQKNLI-TSV---EKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECTTSCC-CBC---CHHHHHHHHTTCSEEECTTCC
T ss_pred CHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCC-EEECCCCcC-Ccc---ChhHhcccccccCEEEccCCC
Confidence 754 677777777755332221 11122356677777 777776532 211 122222 45677777776654
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=6.3e-11 Score=109.11 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=94.1
Q ss_pred CCcceEEEEeccCccccc-c--ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---cC-
Q 046301 200 RNLRHLSYLTSQFDGIKR-F--EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ---LP- 272 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~-~--~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp- 272 (404)
..++.+.+..+.+..... . ..+..+++|+.|.+..+. ....++..+..+++|++|++++|.+.. ++
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-------cchhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence 345555565555443111 0 122345666666665554 233444556666666677766666532 22
Q ss_pred -cccccCCCcceEecCCCCcccCCCCCCCcc-ccccccCceeecCCCCccccc-ccccccc---ccccccCceEeccCCc
Q 046301 273 -NDIAELKHLRYLDFSHTAIEVLPESKLFPD-VGNLVNLRHLKDSHSNLLEEM-PLRIGKL---TSLRTLAKFVVGKGNC 346 (404)
Q Consensus 273 -~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~-~~~l~~L~~L~l~~~~~l~~l-p~~~~~l---~~L~~L~~~~~~~~~~ 346 (404)
..++.+++|++|++++|.++.++.. +.. +..+++|++|++++| .+..+ |..++.+ ++|++|++..+...
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-- 264 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETPTGV--CAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-- 264 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCHHHH--HHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC--
T ss_pred HHhhhcCCCCCEEECCCCCCCchHHH--HHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC--
Confidence 2235666666777766666544321 111 356677777777777 44444 6666665 46777754333221
Q ss_pred CCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301 347 YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS 397 (404)
Q Consensus 347 ~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (404)
..+..+. ++|+ .|+++++.- ..+ + .+..+++|+.|+++.|.-
T Consensus 265 ~lp~~~~--~~L~-~L~Ls~N~l-~~~----~-~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 265 QVPKGLP--AKLR-VLDLSSNRL-NRA----P-QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCSCCC--SCCS-CEECCSCCC-CSC----C-CTTSCCCCSCEECSSTTT
T ss_pred chhhhhc--CCCC-EEECCCCcC-CCC----c-hhhhCCCccEEECcCCCC
Confidence 1122232 5677 777766432 221 1 145667788888876653
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=5.9e-11 Score=121.79 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=94.1
Q ss_pred hhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301 247 LVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR 326 (404)
Q Consensus 247 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 326 (404)
.++..+..+..|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|.. +++|++|++|+|++| .+..+|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp~~ 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-----IKNLSNLRVLDLSHN-RLTSLPAE 288 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-----GGGGTTCCEEECTTS-CCSSCCSS
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-----hhCCCCCCEEeCcCC-cCCccChh
Confidence 456778999999999999999999999999999999999999999977654 999999999999999 67899999
Q ss_pred ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCC
Q 046301 327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENV 370 (404)
Q Consensus 327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~ 370 (404)
|++|++|++|++..+... ..+..+.+|++|+ .|.+.++...
T Consensus 289 ~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~-~L~L~~N~l~ 329 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQ-FLGVEGNPLE 329 (727)
T ss_dssp GGGGTTCSEEECCSSCCC--CCCSSTTSCTTCC-CEECTTSCCC
T ss_pred hcCCCCCCEEECCCCCCC--ccChhhhcCCCcc-EEeCCCCccC
Confidence 999999999976544332 3445688999999 9999886543
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.12 E-value=1.7e-10 Score=108.14 Aligned_cols=181 Identities=19% Similarity=0.130 Sum_probs=94.9
Q ss_pred cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccc-------------------cccchhhhhhhccCccc
Q 046301 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTF-------------------YVTNNLVFHVVPRLRQL 258 (404)
Q Consensus 198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~L 258 (404)
++.+++.|.+..+.+..+. ...+.++++|+.|.+.++.-.... .....+++..|..+++|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 4566778888777665432 124567788888887765411000 01122334456666777
Q ss_pred cEEEecCCCccccCcc-ccc-------------------------C-CCcceEecCCCCcccCCCCCCCccccccccCce
Q 046301 259 RVVSLCGYKIVQLPND-IAE-------------------------L-KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRH 311 (404)
Q Consensus 259 ~~L~l~~~~~~~lp~~-~~~-------------------------L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~ 311 (404)
++|++++|.+..+|+. +.. + ..+++|++++|+|+.+|.. +....+|++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-----~f~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-----AFNGTQLDE 181 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-----SSTTEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-----hccccchhH
Confidence 7777776665544321 111 1 1244455555555544433 555566777
Q ss_pred eecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCce
Q 046301 312 LKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEAL 390 (404)
Q Consensus 312 L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 390 (404)
|++.+++.+..+|.. +..+++|++|++..+ ....++. ..+.+|+ .|.+.++.++..++ .+.++++|+.+
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N---~l~~lp~-~~~~~L~-~L~~l~~~~l~~lP-----~l~~l~~L~~l 251 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRT---RIHSLPS-YGLENLK-KLRARSTYNLKKLP-----TLEKLVALMEA 251 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTS---CCCCCCS-SSCTTCC-EEECTTCTTCCCCC-----CTTTCCSCCEE
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCC---CcCccCh-hhhccch-HhhhccCCCcCcCC-----CchhCcChhhC
Confidence 777665567777654 567777777744322 1111111 1233444 44444444443333 25667777777
Q ss_pred EEEe
Q 046301 391 SLKW 394 (404)
Q Consensus 391 ~l~~ 394 (404)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 7653
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=6.6e-11 Score=108.97 Aligned_cols=181 Identities=13% Similarity=-0.042 Sum_probs=124.2
Q ss_pred CcceEEEEeccCccccccccc--cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-ccccc
Q 046301 201 NLRHLSYLTSQFDGIKRFEGL--HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAE 277 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~ 277 (404)
.++.+.+..+.+.... ...+ .++++|+.|.+..+.-.. .........+..+++|++|++++|.+..+| ..++.
T Consensus 92 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVSWAT---GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCCCSS---TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeecccccc---hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 4788888887765432 2233 678999999998876111 001112234558999999999999998665 67889
Q ss_pred CCCcceEecCCCCccc---CCCCCCCccccccccCceeecCCCCcccccccc----ccccccccccCceEeccCCcCCcc
Q 046301 278 LKHLRYLDFSHTAIEV---LPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR----IGKLTSLRTLAKFVVGKGNCYGLK 350 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~---lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~~~~~~~~~~~~~~ 350 (404)
+++|++|++++|++.. ++.. ..++.+++|++|++++| .+..+|.. ++++++|++|++..+.... ..+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~ 242 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNP 242 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCS
T ss_pred CCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchh
Confidence 9999999999998653 3221 22578999999999999 67766653 5678999999665443322 1133
Q ss_pred ccccc---cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCC
Q 046301 351 ELRSL---MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNST 398 (404)
Q Consensus 351 ~l~~L---~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (404)
.+..+ ++|+ .|.++++.- .. +|..+. ++|+.|+|++|.-.
T Consensus 243 ~~~~~~~~~~L~-~L~Ls~N~l-~~----lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 243 SAPRCMWSSALN-SLNLSFAGL-EQ----VPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCSSCCCCTTCC-CEECCSSCC-CS----CCSCCC--SCCSCEECCSCCCC
T ss_pred hHHhccCcCcCC-EEECCCCCC-Cc----hhhhhc--CCCCEEECCCCcCC
Confidence 44444 6898 899987543 22 344443 79999999998744
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=3e-11 Score=113.75 Aligned_cols=155 Identities=18% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCccEEEecccCccccccccchhhhhhhc-cCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVP-RLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPD 302 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~ 302 (404)
+.++.|.+..+. ...+....+. ++++|++|++++|.+..+|+ .+..+++|++|+|++|.++.++.. .
T Consensus 39 ~~l~~L~Ls~N~-------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 107 (361)
T 2xot_A 39 SYTALLDLSHNN-------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF----L 107 (361)
T ss_dssp TTCSEEECCSSC-------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----T
T ss_pred CCCCEEECCCCC-------CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH----H
Confidence 457888887765 3445556676 89999999999999998764 589999999999999999987653 5
Q ss_pred ccccccCceeecCCCCccccc-cccccccccccccCceEeccCCc--CCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301 303 VGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNC--YGLKELRSLMHLQEKLTISGLENVNDAEDAKEA 379 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~--~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 379 (404)
+.++++|++|++++| .+..+ |..+.++++|+.|++..+..... ..+..+..+++|+ .|++.++.- ..++ +.
T Consensus 108 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~---~~ 181 (361)
T 2xot_A 108 FSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM-LLDLSSNKL-KKLP---LT 181 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC-EEECCSSCC-CCCC---HH
T ss_pred hCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC-EEECCCCCC-CccC---HH
Confidence 889999999999999 56666 55699999999996654332210 0111125688888 899887542 2322 22
Q ss_pred cccCccC--CCceEEEecC
Q 046301 380 QLNGKEK--LEALSLKWVN 396 (404)
Q Consensus 380 ~l~~l~~--L~~L~l~~~~ 396 (404)
.+..+.+ |+.|+|+.|.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 3444444 4778887654
No 108
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=1.4e-12 Score=112.00 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=98.9
Q ss_pred hhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK 329 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 329 (404)
..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. .+..+++|++|++++| .+..+| .+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-----~~~~~~~L~~L~L~~N-~l~~l~-~~~~ 113 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYN-QIASLS-GIEK 113 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS-----HHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc-----hhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence 36788899999999999998888 88999999999999998887664 3788899999999998 777887 6888
Q ss_pred cccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc----------cccCccCCCceE
Q 046301 330 LTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA----------QLNGKEKLEALS 391 (404)
Q Consensus 330 l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~----------~l~~l~~L~~L~ 391 (404)
+++|++|++..+.......+..+..+++|+ .|.+.++. +.+..+. .+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~-~L~l~~N~----l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLE-DLLLAGNP----LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCS-EEEECSCH----HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCC-EEEecCCc----cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 899999976655433212234577888888 88887642 3333332 377888899876
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=7.3e-11 Score=99.22 Aligned_cols=127 Identities=18% Similarity=0.132 Sum_probs=101.0
Q ss_pred CCCcceEEEEeccCccccccccccCCC-CccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-c
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVE-YLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-A 276 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~ 276 (404)
...++.+.+..+.+..+ +.+..+. .|+.|.+.++. ...+ ..+..+++|++|++++|.+..+|+.+ .
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence 34677777777766543 3444554 99999998876 1122 46889999999999999999998776 8
Q ss_pred cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc----ccccccccccCceEe
Q 046301 277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR----IGKLTSLRTLAKFVV 341 (404)
Q Consensus 277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~~~~~ 341 (404)
.+++|++|++++|.+..+|.- ..+..+++|++|++++| .+..+|.. ++.+++|+.|++..+
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCcCCcchhh---HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999999999877641 14889999999999999 77888875 888999999977654
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.11 E-value=4.7e-11 Score=110.34 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-----
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND----- 274 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~----- 274 (404)
..++.+.+..+.+.... ...+.++++|+.|.+..+.- ...++ +..+++|++|++++|.+..+|..
T Consensus 34 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-------~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVL-------YETLD--LESLSTLRTLDLNNNYVQELLVGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCC-------EEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcC-------Ccchh--hhhcCCCCEEECcCCccccccCCCCcCE
Confidence 46788888777665532 24567889999999987751 11222 77889999999999887755421
Q ss_pred ------------cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc-ccccccccc
Q 046301 275 ------------IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI-GKLTSLRTL 336 (404)
Q Consensus 275 ------------~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~~l~~L~~L 336 (404)
...+++|++|++++|.+..++. ..++.+++|++|++++| .+..+ |..+ ..+++|++|
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG----BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCCCccc----hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEE
Confidence 0112334444444444443322 13555555666666555 33333 2223 244555555
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=99.11 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=82.6
Q ss_pred ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-ccccccccc
Q 046301 256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLR 334 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~ 334 (404)
++|++|++++|.+..+|..+..+++|++|++++|.|+.++.. .+.++++|++|++++| .+..+|. .+..+++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCC
Confidence 579999999999999999999999999999999999877643 5889999999999998 6777765 588999999
Q ss_pred ccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 335 TLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 335 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
+|++..+... ......+..+++|+ .|.+.+..
T Consensus 106 ~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGNDIS-VVPEGAFNDLSALS-HLAIGANP 137 (193)
T ss_dssp EEECCSSCCC-BCCTTTTTTCTTCC-EEECCSSC
T ss_pred EEECCCCCCC-eeChhhhhcCcccc-EEEeCCCC
Confidence 9966543222 11122367778888 88887643
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=1.3e-10 Score=99.26 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=79.9
Q ss_pred cccEEEecCCCccccCcc--cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301 257 QLRVVSLCGYKIVQLPND--IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 333 (404)
Q Consensus 257 ~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 333 (404)
.|++|++++|.+..+|+. ++.+++|++|++++|.++.++ |..+.++++|++|++++| .+..+|.. ++++++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCC
Confidence 789999999999888764 888999999999999988663 235888999999999998 56666554 8888999
Q ss_pred cccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301 334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
++|++..+... ...+..+..+++|+ .|.+.++.
T Consensus 105 ~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDNQIS-CVMPGSFEHLNSLT-SLNLASNP 137 (192)
T ss_dssp CEEECCSSCCC-EECTTSSTTCTTCC-EEECTTCC
T ss_pred CEEECCCCcCC-eeCHHHhhcCCCCC-EEEeCCCC
Confidence 99866543222 22345577788888 88887754
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.07 E-value=4.8e-11 Score=110.30 Aligned_cols=169 Identities=11% Similarity=-0.000 Sum_probs=99.4
Q ss_pred CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Cccc-ccC
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDI-AEL 278 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~~L 278 (404)
.++.+.+..+.+.... ...++.|+.|.+..+. .....+..+..+++|++|++++|.+..+ |..+ ..+
T Consensus 100 ~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNK-------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp TCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-------CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CcCEEECCCCccCCcC----ccccCCCCEEECCCCC-------CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 4444554444433321 1235566777666554 2334444566777777777777777754 3334 357
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL 358 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 358 (404)
++|++|++++|.++.+|. ...+++|++|++++| .+..+|..+..+++|++|++..+... ..+..+..+++|
T Consensus 169 ~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L 239 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNL 239 (317)
T ss_dssp TTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTC
T ss_pred CcCCEEECCCCcCccccc------ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCC
Confidence 777777777777776643 334777777777777 66777777777777777754332221 122345666777
Q ss_pred ccceEEcCCCCCCCHhHHHhccccCccCCCceEEE
Q 046301 359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 393 (404)
Q Consensus 359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 393 (404)
+ .|.+.++.-. .+..+..+..+++|+.|+++
T Consensus 240 ~-~L~l~~N~~~---~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 240 E-HFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp C-EEECTTCCCB---HHHHHHHHHTCHHHHHHHHH
T ss_pred C-EEEccCCCcc---CcCHHHHHhccccceEEECC
Confidence 7 7777664321 13444555666666666655
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.07 E-value=5.2e-10 Score=111.65 Aligned_cols=155 Identities=14% Similarity=0.039 Sum_probs=103.0
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC---cccccCCCcceEecCCCCccc-CCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP---NDIAELKHLRYLDFSHTAIEV-LPES 297 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp---~~~~~L~~L~~L~l~~~~l~~-lp~~ 297 (404)
..++.|+.|.+..+. .....+..+.++++|++|++++|.+..+| ..++.+++|++|++++|.+.. +|..
T Consensus 350 ~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-------FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSC-------CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCc-------cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 466777888777665 22334556778888888888888887554 457788888888888888875 5543
Q ss_pred CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHH
Q 046301 298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAK 377 (404)
Q Consensus 298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~ 377 (404)
.+..+++|++|++++|.....+|..+. ++|++|++..+... ..+..+..+++|+ .|++.++.- ..++.
T Consensus 423 ----~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~-~L~L~~N~l-~~l~~-- 490 (562)
T 3a79_B 423 ----TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQ-ELNVASNQL-KSVPD-- 490 (562)
T ss_dssp ----CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCS-EEECCSSCC-CCCCT--
T ss_pred ----hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCC-EEECCCCCC-CCCCH--
Confidence 366778888888888844455555443 57777755433221 2233455777888 888877542 22221
Q ss_pred hccccCccCCCceEEEecC
Q 046301 378 EAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~ 396 (404)
..+..+++|+.|+++.|.
T Consensus 491 -~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 491 -GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -TSTTTCTTCCCEECCSCC
T ss_pred -HHHhcCCCCCEEEecCCC
Confidence 237778888888887775
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=1.2e-10 Score=114.07 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=118.9
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccc-c
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIA-E 277 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~-~ 277 (404)
..++.|.+..+.+.... ...++.|+.|.+..+. .....+..+.++++|++|++++|.+.. .|..+. .
T Consensus 99 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp TTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSC-------CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred CCcCEEECcCCcCCCCC----ccccCCCCEEECCCCC-------CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 45566666665554432 1245778888887765 344556667888999999999999885 566665 7
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH 357 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 357 (404)
+++|++|++++|.+..+|. ...+++|++|++++| .+..+|+.++.+++|+.|++..+... ..+..+..+++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~ 238 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQN 238 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTT
T ss_pred CCcccEEecCCCccccccc------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCC
Confidence 8999999999999887753 446899999999998 78888888888999999865433222 12345677788
Q ss_pred cccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301 358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL 392 (404)
Q Consensus 358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 392 (404)
|+ .|.+.++... .+..+..+..+++|+.|.+
T Consensus 239 L~-~L~l~~N~l~---c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 239 LE-HFDLRGNGFH---CGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CC-EEECTTCCBC---HHHHHHHHTTCHHHHHHHH
T ss_pred CC-EEEcCCCCCc---CcchHHHHHhCCCCcEEec
Confidence 88 8888775431 1345555666666666655
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=2.5e-10 Score=113.62 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=83.5
Q ss_pred CccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccc
Q 046301 226 YLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN 305 (404)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~ 305 (404)
.|+.|.+.++. ...+ +. +..+++|++|++++|.+..+|..++.|++|++|+|++|.++.+| . +++
T Consensus 442 ~L~~L~Ls~n~-------l~~l-p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-----l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHKD-------LTVL-CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-----VAN 506 (567)
T ss_dssp TCSEEECTTSC-------CSSC-CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-----GTT
T ss_pred CceEEEecCCC-------CCCC-cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-----cCC
Confidence 35566665554 2223 33 88999999999999999999999999999999999999999776 3 999
Q ss_pred cccCceeecCCCCccccc--cccccccccccccCceEe
Q 046301 306 LVNLRHLKDSHSNLLEEM--PLRIGKLTSLRTLAKFVV 341 (404)
Q Consensus 306 l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~~~~~ 341 (404)
+++|++|++++| .+..+ |..++.+++|++|++..+
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC
Confidence 999999999999 67777 888999999999966533
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=92.71 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+..+. ...+ +..|.++++|++|++++|.++.+++ .+..+++|++|++++|.++.++.. .+
T Consensus 31 ~~l~~L~L~~n~-------i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQ-------FTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR----TF 98 (193)
T ss_dssp TTCCEEECCSSC-------CCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TT
T ss_pred CCCCEEECCCCc-------Cchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH----Hh
Confidence 588999988765 2223 3578999999999999999998764 589999999999999999987743 58
Q ss_pred cccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV 340 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~ 340 (404)
..+++|++|++++| .+..+|.. +..+++|+.|++..
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 99999999999999 78888875 88899999996543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=1.4e-09 Score=108.05 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=86.5
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK 279 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~ 279 (404)
..++.|.+..+.+..+ + ..+++|+.|.+.++. ...++. +.+ +|++|++++|.+..+|. .++
T Consensus 80 ~~L~~L~Ls~N~l~~i---p--~~l~~L~~L~Ls~N~-------l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~ 140 (571)
T 3cvr_A 80 PQITVLEITQNALISL---P--ELPASLEYLDACDNR-------LSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPA 140 (571)
T ss_dssp TTCSEEECCSSCCSCC---C--CCCTTCCEEECCSSC-------CSCCCC--CCT--TCCEEECCSSCCSCCCC---CCT
T ss_pred CCCCEEECcCCCCccc---c--cccCCCCEEEccCCC-------CCCcch--hhc--CCCEEECCCCcCCCCCC---cCc
Confidence 4566777766665432 2 345777777776654 111222 333 67777777777777666 567
Q ss_pred CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc-
Q 046301 280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL- 358 (404)
Q Consensus 280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L- 358 (404)
+|++|++++|.++.+|. .+++|++|++++| .+..+|. ++ ++|+.|++..+.. ..++.++. +|
T Consensus 141 ~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L---~~lp~~~~--~L~ 203 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE--------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLL---ESLPAVPV--RNH 203 (571)
T ss_dssp TCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCC---SSCCCCC------
T ss_pred cccEEeCCCCccCcCCC--------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCC---CchhhHHH--hhh
Confidence 77777777777765542 3466777777776 5666666 54 5666664432221 12222322 34
Q ss_pred ------ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 359 ------QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 359 ------~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+ .|.+.++.- .. +|..+..+++|+.|+|+.|.
T Consensus 204 ~~~~~L~-~L~Ls~N~l-~~----lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 204 HSEETEI-FFRCRENRI-TH----IPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ----CCE-EEECCSSCC-CC----CCGGGGGSCTTEEEECCSSS
T ss_pred cccccce-EEecCCCcc-ee----cCHHHhcCCCCCEEEeeCCc
Confidence 5 566655322 22 33345556667777776654
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.96 E-value=9.1e-11 Score=111.47 Aligned_cols=190 Identities=13% Similarity=0.058 Sum_probs=114.9
Q ss_pred CCcceEEEEeccCccccc--c-------ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc
Q 046301 200 RNLRHLSYLTSQFDGIKR--F-------EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ 270 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~--~-------~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 270 (404)
..++.+.+..+....+.. + ..+..+++|+.|.+..+.-. .......+..+..+++|++|++++|.+..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC---TTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC---HHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 456777766543332210 1 12356788888888766510 00111345567788888888888888752
Q ss_pred -----cCcccccC---------CCcceEecCCCCcc--cCCCCCCCccccccccCceeecCCCCccc------ccccccc
Q 046301 271 -----LPNDIAEL---------KHLRYLDFSHTAIE--VLPESKLFPDVGNLVNLRHLKDSHSNLLE------EMPLRIG 328 (404)
Q Consensus 271 -----lp~~~~~L---------~~L~~L~l~~~~l~--~lp~~~~p~~~~~l~~L~~L~l~~~~~l~------~lp~~~~ 328 (404)
++..+..+ ++|++|++++|++. .+| .+...+..+++|++|++++| .+. -.|..+.
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA 213 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh
Confidence 33344444 78888888888775 222 11134667888999999888 454 3444677
Q ss_pred ccccccccCceEeccCC---cCCccccccccccccceEEcCCCCCCCHhHHHhccc--cCccCCCceEEEecC
Q 046301 329 KLTSLRTLAKFVVGKGN---CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL--NGKEKLEALSLKWVN 396 (404)
Q Consensus 329 ~l~~L~~L~~~~~~~~~---~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~ 396 (404)
++++|++|++..+.... ...+..+..+++|+ .|.++++.-.......++..+ ..+++|+.|+|++|.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR-ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC-EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC-EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 88888888654332210 11234467778888 888887653221123345555 348889999998775
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=1.2e-09 Score=93.01 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCccEEEecccCccccccccchhhh-hhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVF-HVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPD 302 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~ 302 (404)
..++.|.+..+. ...+++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++.. .
T Consensus 29 ~~l~~L~l~~n~-------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 97 (192)
T 1w8a_A 29 LHTTELLLNDNE-------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK----M 97 (192)
T ss_dssp TTCSEEECCSCC-------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS----S
T ss_pred CCCCEEECCCCc-------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH----H
Confidence 388999888765 223333 2488999999999999999976 77899999999999999999977643 5
Q ss_pred ccccccCceeecCCCCccccccccccccccccccCceEe
Q 046301 303 VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVV 341 (404)
Q Consensus 303 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~ 341 (404)
+.++++|++|++++|......|..++.+++|++|++..+
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 889999999999999433444777999999999965433
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1.3e-09 Score=91.49 Aligned_cols=103 Identities=23% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.++.|.+.++. ...+++..|..+++|++|++++|.+..+|+. +..+++|++|++++|.++.+|.. .+
T Consensus 28 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~ 96 (177)
T 2o6r_A 28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG----VF 96 (177)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCcEEEeCCCc-------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH----Hh
Confidence 577777776654 2344455677788888888888888877655 57788888888888888866643 46
Q ss_pred cccccCceeecCCCCcccccccc-ccccccccccCce
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF 339 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~ 339 (404)
..+++|++|++++| .+..+|.. +..+++|++|++.
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEec
Confidence 77888888888888 67777765 4677888887554
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=2.1e-09 Score=90.22 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=83.4
Q ss_pred ccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301 256 RQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 333 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 333 (404)
++|+.|++++|.+..+|+. ++.+++|++|++++|.+..+|.. .+..+++|++|++++| .+..+|.. ++++++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCC-CccccCHHHhhCCccc
Confidence 6889999999999887764 58899999999999999877643 4688999999999998 67777765 6888999
Q ss_pred cccCceEeccCCcCCccccccccccccceEEcCCCCCCCH
Q 046301 334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDA 373 (404)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~ 373 (404)
++|++..+... ......+..+++|+ .|.+.++.-....
T Consensus 103 ~~L~l~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 103 KELALDTNQLK-SVPDGIFDRLTSLQ-KIWLHTNPWDCSC 140 (177)
T ss_dssp CEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSSCBCCCH
T ss_pred CEEECcCCcce-EeCHHHhcCCcccC-EEEecCCCeeccC
Confidence 99966543322 11122357788888 8888876544333
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.93 E-value=4.2e-09 Score=105.77 Aligned_cols=75 Identities=16% Similarity=0.015 Sum_probs=46.3
Q ss_pred ccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccC
Q 046301 307 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEK 386 (404)
Q Consensus 307 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~ 386 (404)
++|++|++++| .+..+| ..+++|+.|++..+ ....++. .+++|+ .|.+.++.- . .+|..+.++++
T Consensus 221 ~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N---~L~~lp~--~~~~L~-~L~Ls~N~L-~----~lp~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP---VLPSELKELMVSGN---RLTSLPM--LPSGLL-SLSVYRNQL-T----RLPESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS---CCSCCCC--CCTTCC-EEECCSSCC-C----SCCGGGGGSCT
T ss_pred CCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC---CCCcCCc--ccccCc-EEeCCCCCC-C----cCCHHHhhccc
Confidence 56777777766 566666 33456666644322 2222222 456677 788877532 2 33556888899
Q ss_pred CCceEEEecC
Q 046301 387 LEALSLKWVN 396 (404)
Q Consensus 387 L~~L~l~~~~ 396 (404)
|+.|+|+.|.
T Consensus 286 L~~L~L~~N~ 295 (622)
T 3g06_A 286 ETTVNLEGNP 295 (622)
T ss_dssp TCEEECCSCC
T ss_pred cCEEEecCCC
Confidence 9999998775
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.93 E-value=2.2e-10 Score=108.80 Aligned_cols=194 Identities=13% Similarity=0.065 Sum_probs=122.3
Q ss_pred CCcceEEEEeccCcccc---ccccccCCCCccEEEecccCccccccccchhhhhhhccC---------ccccEEEecCCC
Q 046301 200 RNLRHLSYLTSQFDGIK---RFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL---------RQLRVVSLCGYK 267 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~ 267 (404)
..++.|.+..+.+.... ....+.++++|+.|.+..+.- ...........+..+ ++|++|++++|.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL---GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC---HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC---CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 45677777776654421 123456788999998887651 000011223334444 899999999998
Q ss_pred cc--ccC---cccccCCCcceEecCCCCcccCCCC-CCCccccccccCceeecCCCCcc-----cccccccccccccccc
Q 046301 268 IV--QLP---NDIAELKHLRYLDFSHTAIEVLPES-KLFPDVGNLVNLRHLKDSHSNLL-----EEMPLRIGKLTSLRTL 336 (404)
Q Consensus 268 ~~--~lp---~~~~~L~~L~~L~l~~~~l~~lp~~-~~p~~~~~l~~L~~L~l~~~~~l-----~~lp~~~~~l~~L~~L 336 (404)
+. .+| ..+..+++|++|++++|.+...--. ..|..+..+++|++|++++|. + ..+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEE
Confidence 86 444 5677888999999999988721000 011248889999999999984 5 6678888888999998
Q ss_pred CceEeccCCc--C-Ccccc--ccccccccceEEcCCCCCCCHhHHHhccc-cCccCCCceEEEecCCC
Q 046301 337 AKFVVGKGNC--Y-GLKEL--RSLMHLQEKLTISGLENVNDAEDAKEAQL-NGKEKLEALSLKWVNST 398 (404)
Q Consensus 337 ~~~~~~~~~~--~-~~~~l--~~L~~L~~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~ 398 (404)
++..+..... . .+..+ ..+++|+ .|.++++.-...-...++..+ .++++|+.|++++|.-.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~-~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCC-EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeE-EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 6543322110 0 11234 3378888 888887543211111355555 56789999999877643
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.91 E-value=7.1e-09 Score=100.52 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=63.7
Q ss_pred hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
+.++++|++|++++|.+..+|..+ .+|++|++++|.+..+| .++++++|++|++++| .+..+|... +
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~------~~~~l~~L~~L~l~~N-~l~~l~~~~---~ 215 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP------ELQNLPFLTAIYADNN-SLKKLPDLP---L 215 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSS-CCSSCCCCC---T
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc------cccCCCCCCEEECCCC-cCCcCCCCc---C
Confidence 555555555555555555555432 35555555555555443 2666666677766666 455555432 3
Q ss_pred cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+|++|++..+ ....++.+..+++|+ .|.+.++.- ..++ . ...+|+.|+++.|.
T Consensus 216 ~L~~L~l~~n---~l~~lp~~~~l~~L~-~L~l~~N~l-~~l~----~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 216 SLESIVAGNN---ILEELPELQNLPFLT-TIYADNNLL-KTLP----D---LPPSLEALNVRDNY 268 (454)
T ss_dssp TCCEEECCSS---CCSSCCCCTTCTTCC-EEECCSSCC-SSCC----S---CCTTCCEEECCSSC
T ss_pred cccEEECcCC---cCCcccccCCCCCCC-EEECCCCcC-Cccc----c---cccccCEEECCCCc
Confidence 5566643322 222334566777777 777766432 2211 1 12456666666554
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=1e-08 Score=102.99 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=34.2
Q ss_pred CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccccc--------------ccCceeecCCCCcc
Q 046301 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNL--------------VNLRHLKDSHSNLL 320 (404)
Q Consensus 255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l--------------~~L~~L~l~~~~~l 320 (404)
+++|+.|++++|.+..+|.. +++|++|++++|.+..+|.. |..+..| ++|++|++++| .+
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l 193 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QL 193 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc--cCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CC
Confidence 34455555555555555543 25556666666655555431 2223333 66666666666 45
Q ss_pred cccccc
Q 046301 321 EEMPLR 326 (404)
Q Consensus 321 ~~lp~~ 326 (404)
..+|..
T Consensus 194 ~~l~~~ 199 (622)
T 3g06_A 194 ASLPTL 199 (622)
T ss_dssp SCCCCC
T ss_pred CCCCCc
Confidence 555543
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=9.5e-09 Score=99.63 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=107.1
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
+..++.+.+..+.+.. ++.+.++++|+.|.+..+.- ..++ . ...+|++|++++|.+..+| .++.+
T Consensus 130 ~~~L~~L~L~~n~l~~---lp~~~~l~~L~~L~l~~N~l-------~~lp-~---~~~~L~~L~L~~n~l~~l~-~~~~l 194 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSL-------KKLP-D---LPPSLEFIAAGNNQLEELP-ELQNL 194 (454)
T ss_dssp CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCC-------SCCC-C---CCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred CCCCCEEECcCCCCCC---CcccCCCCCCCEEECCCCcC-------cccC-C---CcccccEEECcCCcCCcCc-cccCC
Confidence 3567777777776654 33577888888888877651 1111 1 2348999999999998887 68899
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL 358 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 358 (404)
++|++|++++|.+..+|.. . ++|++|++++| .+..+|. ++.+++|++|++..+.. ..++. .+++|
T Consensus 195 ~~L~~L~l~~N~l~~l~~~-----~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l---~~l~~--~~~~L 259 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKLPDL-----P---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLL---KTLPD--LPPSL 259 (454)
T ss_dssp TTCCEEECCSSCCSSCCCC-----C---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCC---SSCCS--CCTTC
T ss_pred CCCCEEECCCCcCCcCCCC-----c---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcC---Ccccc--ccccc
Confidence 9999999999988877642 2 48899999988 6778884 88888999886543222 12222 23567
Q ss_pred ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+ .|.+.++.- ..+ +.. .++|+.|++++|.
T Consensus 260 ~-~L~l~~N~l-~~l----~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 260 E-ALNVRDNYL-TDL----PEL---PQSLTFLDVSENI 288 (454)
T ss_dssp C-EEECCSSCC-SCC----CCC---CTTCCEEECCSSC
T ss_pred C-EEECCCCcc-ccc----Ccc---cCcCCEEECcCCc
Confidence 7 777776542 222 221 2567777776664
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.85 E-value=5.6e-10 Score=105.11 Aligned_cols=190 Identities=10% Similarity=0.068 Sum_probs=94.3
Q ss_pred CcceEEEEeccCccccccccccCC-----CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCc-
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLHKV-----EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPN- 273 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~- 273 (404)
.++.+.+..+.+.... ...+..+ +.|+.|.+..+.-. ..........+..+ ++|++|++++|.+...+.
T Consensus 52 ~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 4556666555443321 1112221 66666666555400 00111122233344 667777777777664432
Q ss_pred c----cccC-CCcceEecCCCCcccCCCCCCCccccccc-cCceeecCCCCcccccc-ccc----ccc-ccccccCceEe
Q 046301 274 D----IAEL-KHLRYLDFSHTAIEVLPESKLFPDVGNLV-NLRHLKDSHSNLLEEMP-LRI----GKL-TSLRTLAKFVV 341 (404)
Q Consensus 274 ~----~~~L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~-~L~~L~l~~~~~l~~lp-~~~----~~l-~~L~~L~~~~~ 341 (404)
. +..+ .+|++|++++|.+.......++..+..++ +|++|++++| .+...+ ..+ ..+ ++|++|++..+
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2 2222 46777777777666322222223344554 7777777777 444332 222 333 47777754332
Q ss_pred ccCC--cC-Cccccccc-cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 342 GKGN--CY-GLKELRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 342 ~~~~--~~-~~~~l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.... .. ....+..+ ++|+ .|+++++.-...-...+...+..+++|+.|++++|.
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVV-SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCC-EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCChhHHHHHHHHHhcCCCCce-EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 2111 00 11123332 4677 788777643332334445556777888888887775
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=1.6e-10 Score=99.14 Aligned_cols=125 Identities=23% Similarity=0.241 Sum_probs=98.3
Q ss_pred ccEEEecCC--CccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccc
Q 046301 258 LRVVSLCGY--KIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 335 (404)
Q Consensus 258 L~~L~l~~~--~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 335 (404)
|+...+.+. .++.+|..++.+++|++|++++|.+..+| . +.++++|++|++++| .+..+|..+..+++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-----~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRN-LIKKIENLDAVADTLEE 97 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-----HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-----cccCCCCCEEECCCC-CcccccchhhcCCcCCE
Confidence 455555544 45566779999999999999999999776 4 999999999999999 78899988888899999
Q ss_pred cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
|++..+... .++.+..+++|+ .|.+.++.- ...+.. ..+..+++|+.|+++.|.
T Consensus 98 L~L~~N~l~---~l~~~~~l~~L~-~L~l~~N~i-~~~~~~--~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 98 LWISYNQIA---SLSGIEKLVNLR-VLYMSNNKI-TNWGEI--DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEEEECC---CHHHHHHHHHSS-EEEESEEEC-CCHHHH--HHHTTTTTCSEEEECSCH
T ss_pred EECcCCcCC---cCCccccCCCCC-EEECCCCcC-CchhHH--HHHhcCCCCCEEEecCCc
Confidence 977766443 355788899999 999987643 333321 357889999999998774
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=4.5e-09 Score=87.67 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=55.2
Q ss_pred ccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301 256 RQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 333 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 333 (404)
+.|++|++++|.+..+ |..+..+++|++|+|++|+|+.+|.. .+..+++|++|++++| .+..+|.. +.++++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh----hccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence 5677777777777766 44577777777777777777766643 3567777777777777 56666654 6777777
Q ss_pred cccCce
Q 046301 334 RTLAKF 339 (404)
Q Consensus 334 ~~L~~~ 339 (404)
++|++.
T Consensus 105 ~~L~L~ 110 (170)
T 3g39_A 105 THIWLL 110 (170)
T ss_dssp CEEECC
T ss_pred CEEEeC
Confidence 777554
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=1.2e-08 Score=85.05 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=83.0
Q ss_pred cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccc
Q 046301 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT 335 (404)
Q Consensus 257 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~ 335 (404)
..+.++++++.++.+|..+. .+|++|++++|.|+.++. ..+..+++|++|++++| .+..+|.. +.++++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence 35789999999999998875 899999999999998753 35899999999999999 78888876 689999999
Q ss_pred cCceEeccCCcCCccccccccccccceEEcCCCC
Q 046301 336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLEN 369 (404)
Q Consensus 336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~ 369 (404)
|++..+... ......+..+++|+ .|.+.++.-
T Consensus 83 L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~~ 114 (170)
T 3g39_A 83 LSLNDNQLK-SIPRGAFDNLKSLT-HIWLLNNPW 114 (170)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCB
T ss_pred EECCCCccC-EeCHHHhcCCCCCC-EEEeCCCCC
Confidence 966544322 11223478888999 899987643
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=1.3e-08 Score=85.22 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=67.5
Q ss_pred ccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301 256 RQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL 333 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 333 (404)
+.|++|++++|.+..+ |..+..+++|++|+|++|+|+.+|.. .+.++++|++|++++| .+..+|.. +..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence 7889999999999877 56788999999999999999987754 3578999999999998 78888876 8889999
Q ss_pred cccCceEe
Q 046301 334 RTLAKFVV 341 (404)
Q Consensus 334 ~~L~~~~~ 341 (404)
++|++..+
T Consensus 108 ~~L~L~~N 115 (174)
T 2r9u_A 108 THIYLYNN 115 (174)
T ss_dssp SEEECCSS
T ss_pred CEEEeCCC
Confidence 99865433
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=6.6e-09 Score=86.99 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=78.7
Q ss_pred CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV 303 (404)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~ 303 (404)
+.|+.|.+..+. ...+++..|.++++|++|++++|.+..+|+. +..+++|++|+|++|.|+.+|.. .+
T Consensus 33 ~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~----~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG----AF 101 (174)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCcEEEeCCCC-------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH----Hh
Confidence 788999888776 4455667799999999999999999999887 48999999999999999987753 48
Q ss_pred cccccCceeecCCCCccccccccccccc
Q 046301 304 GNLVNLRHLKDSHSNLLEEMPLRIGKLT 331 (404)
Q Consensus 304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 331 (404)
..+++|++|++++| .+...|..+..+.
T Consensus 102 ~~l~~L~~L~L~~N-~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 102 DNLKSLTHIYLYNN-PWDCECRDIMYLR 128 (174)
T ss_dssp TTCTTCSEEECCSS-CBCTTBGGGHHHH
T ss_pred ccccCCCEEEeCCC-CcccccccHHHHH
Confidence 89999999999999 6666665444443
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.73 E-value=8.6e-10 Score=107.12 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=8.5
Q ss_pred CccCCCceEEEecC
Q 046301 383 GKEKLEALSLKWVN 396 (404)
Q Consensus 383 ~l~~L~~L~l~~~~ 396 (404)
.+++|+.|+++.|.
T Consensus 254 ~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 254 PSSRLRTLWIWECG 267 (461)
T ss_dssp TTCCCCEEECTTSC
T ss_pred CCCCceEEECcCCC
Confidence 45666666666553
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.73 E-value=3.1e-09 Score=106.58 Aligned_cols=136 Identities=13% Similarity=0.032 Sum_probs=64.7
Q ss_pred ccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301 253 PRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI 327 (404)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~ 327 (404)
.++++|++|++++|.+.. ++..+..+++|++|++++|.+..+....++..+.++++|++|++++| .+..+|..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHH
Confidence 345555555555554431 22223344555555555555442222222233444555555555554 344444444
Q ss_pred cccccccccCce------------------------EeccCC-cCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301 328 GKLTSLRTLAKF------------------------VVGKGN-CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN 382 (404)
Q Consensus 328 ~~l~~L~~L~~~------------------------~~~~~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~ 382 (404)
.++++|+.|.+. ...... ......+..+++|+ .|.++++. +. .......+.
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~-~L~Ls~~~-l~--~~~~~~~~~ 315 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-KLDLLYAL-LE--TEDHCTLIQ 315 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC-EEEETTCC-CC--HHHHHHHHT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc-EEecCCCc-CC--HHHHHHHHH
Confidence 444444444322 111111 11222345667777 78887765 22 122333466
Q ss_pred CccCCCceEEE
Q 046301 383 GKEKLEALSLK 393 (404)
Q Consensus 383 ~l~~L~~L~l~ 393 (404)
.+++|+.|+++
T Consensus 316 ~~~~L~~L~L~ 326 (592)
T 3ogk_B 316 KCPNLEVLETR 326 (592)
T ss_dssp TCTTCCEEEEE
T ss_pred hCcCCCEEecc
Confidence 77888888886
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.72 E-value=1.8e-08 Score=100.02 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=96.6
Q ss_pred CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301 199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
..+++.|.+..+.+..+.. +.+ +|+.|.+..+. ...++. .+++|++|++++|.++.+|. .+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~---l~~--~L~~L~Ls~N~-------l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l 159 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE---LPA--SLKHLDVDNNQ-------LTMLPE----LPALLEYINADNNQLTMLPE---LP 159 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCT--TCCEEECCSSC-------CSCCCC----CCTTCCEEECCSSCCSCCCC---CC
T ss_pred cCCCCEEEccCCCCCCcch---hhc--CCCEEECCCCc-------CCCCCC----cCccccEEeCCCCccCcCCC---cC
Confidence 4567778887776655332 332 88888887765 112222 56788999999988888887 56
Q ss_pred CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccc-------cccCceEeccCCcCCccc
Q 046301 279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL-------RTLAKFVVGKGNCYGLKE 351 (404)
Q Consensus 279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L-------~~L~~~~~~~~~~~~~~~ 351 (404)
++|++|++++|.++.+|. +. ++|++|++++| .+..+|. +.. +| +.|++.++... ..+..
T Consensus 160 ~~L~~L~Ls~N~L~~lp~------l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~ 225 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE------LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRIT--HIPEN 225 (571)
T ss_dssp TTCCEEECCSSCCSCCCC------CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCC--CCCGG
T ss_pred CCcCEEECCCCCCCCcch------hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcce--ecCHH
Confidence 788899999988887663 33 78888888888 6778887 654 66 77755433222 23344
Q ss_pred cccccccccceEEcCCCCCCCHhHHHhccccCc
Q 046301 352 LRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK 384 (404)
Q Consensus 352 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l 384 (404)
+.++++|+ .|.+.++. +.+..+..+..+
T Consensus 226 l~~l~~L~-~L~L~~N~----l~~~~p~~l~~l 253 (571)
T 3cvr_A 226 ILSLDPTC-TIILEDNP----LSSRIRESLSQQ 253 (571)
T ss_dssp GGGSCTTE-EEECCSSS----CCHHHHHHHHHH
T ss_pred HhcCCCCC-EEEeeCCc----CCCcCHHHHHHh
Confidence 66788888 88887654 334444444443
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.69 E-value=5e-09 Score=98.56 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred CCcceEEEEeccCccccc--c-ccccCC-CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCcc-----
Q 046301 200 RNLRHLSYLTSQFDGIKR--F-EGLHKV-EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIV----- 269 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~--~-~~~~~~-~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~----- 269 (404)
..++.+.+..+.+..... + ..+..+ +.|+.|.+..+.- ...........+..+ ++|++|++++|.+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF---SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG---GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC---CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 678888888877654221 1 123444 7899999988761 111111222334453 69999999999987
Q ss_pred ccCcccccCC-CcceEecCCCCcccCCCCCCCcccccc-ccCceeecCCCCcccc-----cccccccc-ccccccCceEe
Q 046301 270 QLPNDIAELK-HLRYLDFSHTAIEVLPESKLFPDVGNL-VNLRHLKDSHSNLLEE-----MPLRIGKL-TSLRTLAKFVV 341 (404)
Q Consensus 270 ~lp~~~~~L~-~L~~L~l~~~~l~~lp~~~~p~~~~~l-~~L~~L~l~~~~~l~~-----lp~~~~~l-~~L~~L~~~~~ 341 (404)
.++..+..++ +|++|++++|.+.......+...+..+ ++|++|++++| .+.. +|..+..+ ++|++|++..+
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 4455666666 899999999998865432222234445 59999999999 5665 66666664 48999966544
Q ss_pred ccCCcCCc----cccccccccccceEEcCCC--CCC-CHhHHHhccccCccCCCceEEEecC
Q 046301 342 GKGNCYGL----KELRSLMHLQEKLTISGLE--NVN-DAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 342 ~~~~~~~~----~~l~~L~~L~~~L~l~~~~--~~~-~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.... ..+ ..+..+++|+ .|.+.++. .+. .....++..+..+++|+.|++++|.
T Consensus 236 ~l~~-~~~~~l~~~~~~l~~L~-~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 CLHG-PSLENLKLLKDSLKHLQ-TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCC-CCHHHHHHTTTTTTTCS-EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCc-HHHHHHHHHHhcCCCcc-EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3221 111 2246778888 89998764 111 1234566678888999999998776
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.68 E-value=8.7e-08 Score=89.58 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=97.7
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCcccccC
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPNDIAEL 278 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~~~~L 278 (404)
..++.+.+..+.+...... .......+..+.+.... ....+....|..+ ..+++|++++|.++.+|......
T Consensus 104 ~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~------~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNI------NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp TTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCT------TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred cccccccccccccccCCch-hhcccchhhhhhhcccc------ccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 3456666666655443221 11223334444443322 1222334445555 46899999999999999988888
Q ss_pred CCcceEecCC-CCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301 279 KHLRYLDFSH-TAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM 356 (404)
Q Consensus 279 ~~L~~L~l~~-~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 356 (404)
.+|+.|++++ |.++.+|.. .+..+++|++|++++| .+..+|.. +.+|++|+.+.. .....++.+.+|+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~-----~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPND----VFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLV 246 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTT----TTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTC-----TTCCCCCCTTTCC
T ss_pred cchhHHhhccCCcccCCCHH----HhccCcccchhhcCCC-CcCccChhhhccchHhhhccC-----CCcCcCCCchhCc
Confidence 8999999986 579888764 4789999999999999 79999875 777777777732 1223344566777
Q ss_pred ccccceEEc
Q 046301 357 HLQEKLTIS 365 (404)
Q Consensus 357 ~L~~~L~l~ 365 (404)
+|+ .+.+.
T Consensus 247 ~L~-~l~l~ 254 (350)
T 4ay9_X 247 ALM-EASLT 254 (350)
T ss_dssp SCC-EEECS
T ss_pred Chh-hCcCC
Confidence 777 66664
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.65 E-value=1.6e-09 Score=105.24 Aligned_cols=193 Identities=14% Similarity=0.048 Sum_probs=119.3
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCccc-cc
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDI-AE 277 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~-~~ 277 (404)
..++.+.+..+.+........+..+++|+.|.+..+.- ........+..+..+++|++|++++|.+.. .+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL---TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC---CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC---CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 45677888777665543333367789999999987761 011112345667888999999999999864 23333 33
Q ss_pred CC----CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc-----cccccccccCceEeccCCc-
Q 046301 278 LK----HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI-----GKLTSLRTLAKFVVGKGNC- 346 (404)
Q Consensus 278 L~----~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-----~~l~~L~~L~~~~~~~~~~- 346 (404)
+. +|++|++++|.+....-..+|..+..+++|++|++++|. +... +..+ ...++|++|++..+.....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 699999999998742111234458899999999999994 4322 2222 2355788886543322110
Q ss_pred --CCccccccccccccceEEcCCCCCCCHhHHHhcccc-CccCCCceEEEecCC
Q 046301 347 --YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKEKLEALSLKWVNS 397 (404)
Q Consensus 347 --~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 397 (404)
.....+..+++|+ .|.+.++.-.......+...+. .+++|+.|++++|.-
T Consensus 159 ~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 159 CEPLASVLRAKPDFK-ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHHHHHCTTCC-EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHHHhhCCCCC-EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 0123355678899 8999875421111122222222 356899999988753
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.59 E-value=2.3e-08 Score=100.23 Aligned_cols=130 Identities=16% Similarity=0.102 Sum_probs=77.5
Q ss_pred CcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcc
Q 046301 201 NLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPND 274 (404)
Q Consensus 201 ~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~ 274 (404)
.++.+.+..+.+... .+..+. .+++|+.|.+..+. ..........+.++++|++|++++|.+.. ++.-
T Consensus 106 ~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCE-----GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCE-----EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcC-----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 566677766544331 122232 57888888887653 12222344555678888999988887653 2333
Q ss_pred cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccC
Q 046301 275 IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 337 (404)
Q Consensus 275 ~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 337 (404)
...+++|+.|++++|. ..+....++..+.++++|++|++++|..+..+|..+.++++|+.|.
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 3456788888888886 2222111222234568888888888755555665566666666663
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=3.6e-08 Score=91.99 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=42.5
Q ss_pred ccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCC
Q 046301 221 LHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESK 298 (404)
Q Consensus 221 ~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~ 298 (404)
+..+++|+.|.+.+ +. ...+++..|.++++|++|+|++|.+..+|+ .+..|++|++|+|++|.|..+|..
T Consensus 27 l~~~~~L~~L~l~~~n~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~- 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK- 98 (347)
T ss_dssp SCSCSCCSEEECCSCSS-------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-
T ss_pred CCCCCCeeEEEccCCCC-------CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH-
Confidence 44455555555543 32 233344445555555555555555554433 345555555555555555554432
Q ss_pred CCccccccccCceeecCCC
Q 046301 299 LFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 299 ~p~~~~~l~~L~~L~l~~~ 317 (404)
+.....|+.|++.+|
T Consensus 99 ----~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 ----TVQGLSLQELVLSGN 113 (347)
T ss_dssp ----TTCSCCCCEEECCSS
T ss_pred ----HcccCCceEEEeeCC
Confidence 222222555555555
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=1.1e-07 Score=95.11 Aligned_cols=166 Identities=15% Similarity=0.060 Sum_probs=86.6
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcc-c-------
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIE-V------- 293 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~-~------- 293 (404)
..++.|+.|.+..+.-. ..........+.++++|++|++++|.+..+|..+..+++|+.|+++.+... .
T Consensus 189 ~~~~~L~~L~L~~n~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFA---KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCS---SCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred hcCCCccEEEeeccCCC---ccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 34566777766554410 011233444556677788888887777777777777777777777642111 0
Q ss_pred --------------CCCCCCCccccccccCceeecCCCCcccc--ccccccccccccccCceEeccCCcCCccc-ccccc
Q 046301 294 --------------LPESKLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCYGLKE-LRSLM 356 (404)
Q Consensus 294 --------------lp~~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~-l~~L~ 356 (404)
.....+|..+..+++|++|++++|. +.. ++..+..+++|++|.+. .......+.. ...++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCT
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCC
Confidence 0111234445566666677666663 221 11224556666666443 1101111122 23456
Q ss_pred ccccceEEcC----------CCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301 357 HLQEKLTISG----------LENVNDAEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 357 ~L~~~L~l~~----------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
+|+ .|.+.+ +..+.. ..+......+++|+.|+++++.
T Consensus 343 ~L~-~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 343 QLK-RLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp TCC-EEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEESC
T ss_pred CCC-EEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecCC
Confidence 677 777774 433321 2223334557788888885554
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=3.8e-07 Score=84.95 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=71.0
Q ss_pred hccCccccEEEecC-CCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301 252 VPRLRQLRVVSLCG-YKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK 329 (404)
Q Consensus 252 ~~~l~~L~~L~l~~-~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 329 (404)
+..+.+|+.|+|++ |.+..+| ..++.|++|++|+|++|.|+.+|.. .|.+|++|++|+|++| .+..+|..+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD----AFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----GGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----HhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 88999999999996 9999887 5689999999999999999987643 5899999999999999 78888876433
Q ss_pred cccccccCceEe
Q 046301 330 LTSLRTLAKFVV 341 (404)
Q Consensus 330 l~~L~~L~~~~~ 341 (404)
..+|+.|.+..+
T Consensus 102 ~~~L~~l~l~~N 113 (347)
T 2ifg_A 102 GLSLQELVLSGN 113 (347)
T ss_dssp SCCCCEEECCSS
T ss_pred cCCceEEEeeCC
Confidence 334888865433
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=8.4e-09 Score=97.22 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=92.2
Q ss_pred CCCcceEEEEeccCcccc--ccc-ccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc---
Q 046301 199 SRNLRHLSYLTSQFDGIK--RFE-GLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL--- 271 (404)
Q Consensus 199 ~~~~r~l~~~~~~~~~~~--~~~-~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--- 271 (404)
...++.+.+..+.+.... .+. .+. ..+.|+.|.+..+. ............+++|+.|++++|.+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 345667777666554321 111 111 23678888887765 22222333344566788888888887632
Q ss_pred --Cccc-ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceEecc
Q 046301 272 --PNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGK 343 (404)
Q Consensus 272 --p~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~ 343 (404)
...+ ...++|+.|+|++|.+.......++..+...++|++|++++| .+. .++..+...++|++|++..+..
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 1222 235678888888888764222223334567788888888888 343 2345566677788886544322
Q ss_pred CC--c-CCccccccccccccceEEcCCC
Q 046301 344 GN--C-YGLKELRSLMHLQEKLTISGLE 368 (404)
Q Consensus 344 ~~--~-~~~~~l~~L~~L~~~L~l~~~~ 368 (404)
.. . .....+...++|+ .|+++++.
T Consensus 224 ~~~g~~~l~~~L~~~~~L~-~L~Ls~N~ 250 (372)
T 3un9_A 224 GDTAALALARAAREHPSLE-LLHLYFNE 250 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCC-EEECTTSS
T ss_pred CHHHHHHHHHHHHhCCCCC-EEeccCCC
Confidence 21 0 0112244556777 78887654
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=8.4e-07 Score=82.04 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cccccccc-ccCceEeccCCcCC--ccccc
Q 046301 278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLR-TLAKFVVGKGNCYG--LKELR 353 (404)
Q Consensus 278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~-~L~~~~~~~~~~~~--~~~l~ 353 (404)
+++|+.+++++|+++.+|.. .+.++.+|+.+++.++ +..++.. |.++++|+ .+.+. . .... ...|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~---~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP---A-SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC---T-TCCEECTTTTT
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc---c-cceEEchhhhh
Confidence 67888888888888887765 6888888888888876 7777655 78888888 77332 2 1111 23466
Q ss_pred cccccccceEEcCCCCCCCHhHHHhccccCccCCCceE
Q 046301 354 SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALS 391 (404)
Q Consensus 354 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 391 (404)
.+++|+ .+.+.+. .+.......+.+|++|+.++
T Consensus 295 ~c~~L~-~l~l~~n----~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLR-YVLATGD----KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEE-EEEECSS----CCCEECTTTTCTTCCCCEEE
T ss_pred CCccCC-EEEeCCC----ccCccchhhhcCCcchhhhc
Confidence 777777 7776432 22233345678888888875
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.22 E-value=1.2e-07 Score=95.08 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=74.8
Q ss_pred cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCC-Cccc--cCcccccCCCcceEecCCCCcccCCCCC
Q 046301 222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGY-KIVQ--LPNDIAELKHLRYLDFSHTAIEVLPESK 298 (404)
Q Consensus 222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~~~~L~~L~~L~l~~~~l~~lp~~~ 298 (404)
..+++|+.|.+..+. .....+......+++|++|++++| .+.. ++.-+..+++|++|++++|.+.......
T Consensus 102 ~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCB------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcE------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 357899999988754 222223333336899999999999 4553 5665668999999999999876533222
Q ss_pred CCccccccccCceeecCCCC-cc--ccccccccccccccccCce
Q 046301 299 LFPDVGNLVNLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKF 339 (404)
Q Consensus 299 ~p~~~~~l~~L~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~~~ 339 (404)
++.....+++|++|++++|. .+ ..++.-+.++++|++|++.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 33335578899999999984 11 1122223456888888654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=9.7e-07 Score=82.55 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred ccCCCCccEEEecccCccc--cccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCC
Q 046301 221 LHKVEYLRTFLALLLGTRK--TFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESK 298 (404)
Q Consensus 221 ~~~~~~L~~L~~~~~~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~ 298 (404)
..++++|+.|.+....... ........+...+..+++|+.|+++++.-..+|+ +. +++|+.|++..|.+..-.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~--- 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSV--- 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHH---
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHH---
Confidence 3456788888775432100 0001111234556778889999998874234554 43 788888888877654210
Q ss_pred CCcccc--ccccCceeecCCCC-------ccccccccc--cccccccccCceEeccCC--cCCccccccccccccceEEc
Q 046301 299 LFPDVG--NLVNLRHLKDSHSN-------LLEEMPLRI--GKLTSLRTLAKFVVGKGN--CYGLKELRSLMHLQEKLTIS 365 (404)
Q Consensus 299 ~p~~~~--~l~~L~~L~l~~~~-------~l~~lp~~~--~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~L~l~ 365 (404)
...+. .+|+|++|+|+.+. .+..+...+ ..+++|++|.+..+.... +..+.+.+.+++|+ .|+++
T Consensus 210 -l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~-~LdLs 287 (362)
T 2ra8_A 210 -VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE-TMDIS 287 (362)
T ss_dssp -HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS-EEECC
T ss_pred -HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC-EEECC
Confidence 01132 67888888875321 111221122 246788888654332211 11222234577888 88886
Q ss_pred CCCCCCC-HhHHHhccccCccCCCceEEEecC
Q 046301 366 GLENVND-AEDAKEAQLNGKEKLEALSLKWVN 396 (404)
Q Consensus 366 ~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 396 (404)
.+. +.. -...+...+..+++|+.|+|+.|.
T Consensus 288 ~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 AGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 532 221 123345555677888888887664
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1e-05 Score=71.90 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=62.3
Q ss_pred ccCccccEEEecCCCcccc---CcccccCCCcceEecCCCCcccCCCCCCCccccccc--cCceeecCCCCccccccc--
Q 046301 253 PRLRQLRVVSLCGYKIVQL---PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLV--NLRHLKDSHSNLLEEMPL-- 325 (404)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~l---p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~--~L~~L~l~~~~~l~~lp~-- 325 (404)
.+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.|+.+. .+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~------~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER------ELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG------GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch------hhhhcccCCcceEEccCCcCccccCcch
Confidence 5688999999999998754 466778999999999999998763 255555 899999999965555552
Q ss_pred -----cccccccccccCce
Q 046301 326 -----RIGKLTSLRTLAKF 339 (404)
Q Consensus 326 -----~~~~l~~L~~L~~~ 339 (404)
.+..+++|+.|+..
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 26677888888543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=1.1e-06 Score=82.56 Aligned_cols=137 Identities=14% Similarity=0.031 Sum_probs=83.0
Q ss_pred CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhh-ccCccccEEEecCCCccc-----cCc
Q 046301 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVV-PRLRQLRVVSLCGYKIVQ-----LPN 273 (404)
Q Consensus 200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-----lp~ 273 (404)
..++.+.+..+.+.......-...+++|+.|.+..+.- ...........+ ...+.|+.|++++|.+.. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l---~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL---GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC---CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC---CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 46777777766554322111223356788888877651 000111122223 346789999999998753 455
Q ss_pred ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceE
Q 046301 274 DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFV 340 (404)
Q Consensus 274 ~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~ 340 (404)
.+..+++|++|+|++|.|.......++..+...++|++|++++| .+. .++..+...++|++|++..
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 66778889999999998764221122334667788999999988 444 2344455667888885543
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1e-05 Score=66.88 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=22.4
Q ss_pred ccccEEEecCCCccc-cCcccccCCCcceEecCCC-Ccc
Q 046301 256 RQLRVVSLCGYKIVQ-LPNDIAELKHLRYLDFSHT-AIE 292 (404)
Q Consensus 256 ~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~~-~l~ 292 (404)
..|+.|+++++.++. --..+..+++|+.|+|++| .|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 357777777777652 2233556666777777666 344
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=9.2e-05 Score=68.17 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=65.1
Q ss_pred ccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCc-eeecCCCCccccccc-cccc
Q 046301 253 PRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR-HLKDSHSNLLEEMPL-RIGK 329 (404)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~-~L~l~~~~~l~~lp~-~~~~ 329 (404)
..+++|+.+++++|.++.+|.. +..+.+|+.+++.+| ++.++.. .+.++.+|+ .+++.. .+..++. .|.+
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~--~l~~I~~~aF~~ 295 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA--SVTAIEFGAFMG 295 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT--TCCEECTTTTTT
T ss_pred HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc--cceEEchhhhhC
Confidence 3478999999999999988764 788999999999987 8777765 688999999 999987 4777764 4889
Q ss_pred cccccccCc
Q 046301 330 LTSLRTLAK 338 (404)
Q Consensus 330 l~~L~~L~~ 338 (404)
+++|+.|.+
T Consensus 296 c~~L~~l~l 304 (329)
T 3sb4_A 296 CDNLRYVLA 304 (329)
T ss_dssp CTTEEEEEE
T ss_pred CccCCEEEe
Confidence 999999853
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.51 E-value=8.2e-05 Score=69.43 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=82.3
Q ss_pred hhhccCccccEEEecCCCcc----------ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCc
Q 046301 250 HVVPRLRQLRVVSLCGYKIV----------QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL 319 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~----------~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~ 319 (404)
.....+++|+.|.+...... .++.-+..+++|+.|+++++.-..++ + + .+++|++|++..|..
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-----~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-----K-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-----S-C-BCTTCSEEEEECSBC
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-----c-c-cCCCCcEEEEecCCC
Confidence 34567889999998765321 24455567899999999988312232 2 3 389999999987732
Q ss_pred cccccccc--cccccccccCceEeccC--CcCCcc---c-c--ccccccccceEEcCCCCCCCHhHHHhccccCccCCCc
Q 046301 320 LEEMPLRI--GKLTSLRTLAKFVVGKG--NCYGLK---E-L--RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEA 389 (404)
Q Consensus 320 l~~lp~~~--~~l~~L~~L~~~~~~~~--~~~~~~---~-l--~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 389 (404)
-......+ ..+++|+.|+++..... ....+. . + ..+++|+ .|.+.++.........+.. ...+++|+.
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr-~L~L~~~~i~~~~~~~la~-a~~~~~L~~ 283 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK-WLGIVDAEEQNVVVEMFLE-SDILPQLET 283 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC-EEEEESCTTHHHHHHHHHH-CSSGGGCSE
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC-EEeCCCCCCchHHHHHHHh-CccCCCCCE
Confidence 11111223 36788999976432111 111121 1 1 2467888 8999876532111122221 235789999
Q ss_pred eEEEecC
Q 046301 390 LSLKWVN 396 (404)
Q Consensus 390 L~l~~~~ 396 (404)
|+|++|.
T Consensus 284 LdLs~n~ 290 (362)
T 2ra8_A 284 MDISAGV 290 (362)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9998775
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.31 E-value=0.00016 Score=59.72 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=64.8
Q ss_pred ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-cccccc----ccccccCceEeccC
Q 046301 270 QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKL----TSLRTLAKFVVGKG 344 (404)
Q Consensus 270 ~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~~~~~~~~ 344 (404)
.+|.....-.+|+.||+++|.|+..- -..+..+++|++|+|++|..+..-- ..+..+ ++|++|++..+...
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 35654322357999999999876321 1236789999999999996554321 113333 36888866655433
Q ss_pred CcCCccccccccccccceEEcCCCCCCCH
Q 046301 345 NCYGLKELRSLMHLQEKLTISGLENVNDA 373 (404)
Q Consensus 345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~ 373 (404)
....+..+.++++|+ .|.+.+|..+++.
T Consensus 128 TD~Gl~~L~~~~~L~-~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 128 TDKGIIALHHFRNLK-YLFLSDLPGVKEK 155 (176)
T ss_dssp CHHHHHHGGGCTTCC-EEEEESCTTCCCH
T ss_pred CHHHHHHHhcCCCCC-EEECCCCCCCCch
Confidence 333455677788888 8999988887764
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=1.9e-05 Score=66.33 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=37.8
Q ss_pred hhhhhccCccccEEEecCC-Ccc-----ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 248 VFHVVPRLRQLRVVSLCGY-KIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
....+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|..---..+...+...++|++|++++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3445556666777777776 554 233445555667777777776542100011122444466777777666
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=5.2e-05 Score=67.34 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=54.1
Q ss_pred hccCccccE--EEecCCCccccCcc----cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc
Q 046301 252 VPRLRQLRV--VSLCGYKIVQLPND----IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL 325 (404)
Q Consensus 252 ~~~l~~L~~--L~l~~~~~~~lp~~----~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~ 325 (404)
+...+.|+. ++++.|....++.. ...+++|+.|+|++|.|..++ .+|..+..+++|+.|+|++| .+..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N-~i~~~~- 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGN-ELKSER- 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTS-CCCSGG-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCC-ccCCch-
Confidence 334444554 55666654444332 246889999999999998775 23455778999999999998 666652
Q ss_pred cccccc--cccccC
Q 046301 326 RIGKLT--SLRTLA 337 (404)
Q Consensus 326 ~~~~l~--~L~~L~ 337 (404)
.+..++ +|++|.
T Consensus 213 ~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 213 ELDKIKGLKLEELW 226 (267)
T ss_dssp GGGGGTTSCCSEEE
T ss_pred hhhhcccCCcceEE
Confidence 344444 555553
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.23 E-value=0.00063 Score=64.44 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred hhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 247 LVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 247 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
+....|.++.+|+.+++..|.+..+|.......+|+.+.+..+ ++.++.. .+.++++|+.+++..+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~----aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQ----AFLKTSQLKTIEIPEN 236 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTT----TTTTCTTCCCEECCTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhh----HhhCCCCCCEEecCCC
Confidence 3445677778888888887777777665555567777777633 5555443 4566666666666543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.22 E-value=4.9e-05 Score=63.81 Aligned_cols=115 Identities=13% Similarity=0.012 Sum_probs=72.3
Q ss_pred cccCCCCccEEEeccc-CccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCccc
Q 046301 220 GLHKVEYLRTFLALLL-GTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEV 293 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~ 293 (404)
.+...+.|+.|.+..+ .- ...........+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i---~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNI---PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTC---CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCC---CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3456788899988776 41 111122344566778899999999999863 45556667889999999998874
Q ss_pred CCCCCCCccccccccCceeec--CCCCcccc-----ccccccccccccccCc
Q 046301 294 LPESKLFPDVGNLVNLRHLKD--SHSNLLEE-----MPLRIGKLTSLRTLAK 338 (404)
Q Consensus 294 lp~~~~p~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~~~l~~L~~L~~ 338 (404)
---..+...+...++|++|++ ++| .+.. +...+...++|++|++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEec
Confidence 110112234677788999999 666 3332 2233344455555533
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.09 E-value=0.001 Score=62.98 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=58.8
Q ss_pred hhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cc
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EM 323 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~l 323 (404)
..|.++.+|+.+.+..+ +..++.. +.. .+|+.+.+ .+.++.++.. .+.++++|+.+.+.++ ... .+
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~----aF~~c~~L~~l~l~~~-~~~~~~~~~I 291 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASR----AFYYCPELAEVTTYGS-TFNDDPEAMI 291 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTT----TTTTCTTCCEEEEESS-CCCCCTTCEE
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChh----HhhCCCCCCEEEeCCc-cccCCcccEE
Confidence 34445555555555432 3333222 222 34444444 2233333332 4566667777766654 222 34
Q ss_pred ccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 324 PLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 324 p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
+.. |..+++|+.+.+-. ....-.-..+..+++|+ .+.+.. ++. ......+.+| +|+.+.+..+
T Consensus 292 ~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~-~l~lp~--~l~---~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVT-QLTIPA--NVT---QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCC-EEEECT--TCC---EECTTSSSSS-CCCEEEECCS
T ss_pred CHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCcc-EEEECc--ccc---EEcHHhCCCC-CCCEEEEcCC
Confidence 433 66666666664320 00000112344555666 666632 122 2223456667 7777777554
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0024 Score=49.93 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred cEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCC
Q 046301 259 RVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSN 318 (404)
Q Consensus 259 ~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~ 318 (404)
..++.+++.++ .+|..+. .+|++|+|++|.|+.+|.+ .+..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCC
Confidence 47888888888 8897755 4799999999999988865 57889999999999883
No 160
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.27 E-value=0.043 Score=50.25 Aligned_cols=148 Identities=10% Similarity=0.020 Sum_probs=84.5
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccch
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRS 81 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~ 81 (404)
++.+|+.+|+.+++.... +....... .+.+..+++.|+|.|+++..++..+....+...+- .... .....
T Consensus 199 ~l~pl~~~e~~~~l~~~~-~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~~ 268 (350)
T 2qen_A 199 LVKPFDKDTSVEFLKRGF-REVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL---EVAKG 268 (350)
T ss_dssp ECCCCCHHHHHHHHHHHH-HTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH---HHHHH
T ss_pred eCCCCCHHHHHHHHHHHH-HHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH---HHHHH
Confidence 578999999999997643 21111111 35778999999999999999988654322332221 1110 00000
Q ss_pred hHHH-HHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcccccC
Q 046301 82 SIMG-ALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKI 160 (404)
Q Consensus 82 ~i~~-~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~ 160 (404)
.+.. +-.+.+ . ++..+..+..+|+ + ..+...+........- ... ......+++.|++.+++...+
T Consensus 269 ~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~~------~~~-~~~~~~~l~~L~~~gli~~~~- 334 (350)
T 2qen_A 269 LIMGELEELRR-R-SPRYVDILRAIAL---G-YNRWSLIRDYLAVKGT------KIP-EPRLYALLENLKKMNWIVEED- 334 (350)
T ss_dssp HHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CCSHHHHHHHHHHTTC------CCC-HHHHHHHHHHHHHTTSEEEET-
T ss_pred HHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CCCHHHHHHHHHHHhC------CCC-HHHHHHHHHHHHhCCCEEecC-
Confidence 1111 111222 2 6778889888887 3 2344555443322110 011 144567899999999997542
Q ss_pred CCceEE-echHHHHHH
Q 046301 161 DASRFL-MHDLIHDLA 175 (404)
Q Consensus 161 ~~~~~~-mhdli~~~~ 175 (404)
..+. .|.++++..
T Consensus 335 --~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 335 --NTYKIADPVVATVL 348 (350)
T ss_dssp --TEEEESSHHHHHHH
T ss_pred --CEEEEecHHHHHHH
Confidence 3444 467777654
No 161
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.75 E-value=0.032 Score=51.26 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=84.0
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccch
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRS 81 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~ 81 (404)
++.+|+.+|+.+++...+ +...... +.. ..+++.|+|.|+++..++..+....+...|-. ... .....
T Consensus 205 ~l~~l~~~e~~~~l~~~~-~~~~~~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~---~~~~~ 272 (357)
T 2fna_A 205 ELKPFSREEAIEFLRRGF-QEADIDF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTL---EYAKK 272 (357)
T ss_dssp EECCCCHHHHHHHHHHHH-HHHTCCC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHH---HHHHH
T ss_pred ecCCCCHHHHHHHHHHHH-HHcCCCC-CcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHH---HHHHH
Confidence 578999999999998743 2111111 122 78999999999999999988754323333321 110 00001
Q ss_pred hHHHHHH-HHHh--cCChhhhhhhhhcccCCCCceeChhHHHHHHH-HCCCcccCCCCCcHHHHHHHHHHHHhhCCCccc
Q 046301 82 SIMGALR-VSYH--YLPSYVKRCFAYCSFLPKGYRFDERQIVLLWM-AEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW 157 (404)
Q Consensus 82 ~i~~~l~-~sy~--~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~ 157 (404)
.+...+. ..++ .+++..+..+..+|+ +. +...+....- ..|. .........+++.|+++++|..
T Consensus 273 ~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 273 LILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEe
Confidence 1212222 1111 577888999988887 32 4444433211 1121 0011345678999999999975
Q ss_pred ccCCCceEE-echHHHHH
Q 046301 158 SKIDASRFL-MHDLIHDL 174 (404)
Q Consensus 158 ~~~~~~~~~-mhdli~~~ 174 (404)
.+ ..+. .|.++++.
T Consensus 341 ~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 341 EG---EKYCPSEPLISLA 355 (357)
T ss_dssp SS---SCEEESSHHHHHH
T ss_pred cC---CEEEecCHHHHHh
Confidence 43 3344 57788765
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.47 E-value=0.15 Score=47.77 Aligned_cols=141 Identities=10% Similarity=-0.065 Sum_probs=79.2
Q ss_pred CCCCCCChhhHHHHHHHc---ccCCCCCCCCccHHHHHHHHHHhcC------CCchhHHHHHHHhh------cC--CChh
Q 046301 1 HSLRNLLRDDCLCIFVQH---SLGRTDFVAHQYLSEIGEKIVDRCN------GSPLAAKTLGSLLR------DK--YDPK 63 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~---af~~~~~~~~~~~~~l~~~i~~~c~------GlPLal~~~g~~L~------~~--~~~~ 63 (404)
+++++++.++++++|... +|.... .. .+.+..+++.|+ |.|..+..+..... +. -+.+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 368899999999999755 443221 11 366788888998 99976655544221 11 1123
Q ss_pred HHHHHHhhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCC--CCceeChhHHHHHHHHC--CCcccCCCCCcHH
Q 046301 64 DWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLP--KGYRFDERQIVLLWMAE--GLLQHETYGKQME 139 (404)
Q Consensus 64 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~ 139 (404)
.+..++.... . ...+.-.+..||...+.++..+|.++ .+..++..++...+... ..... .....
T Consensus 285 ~v~~~~~~~~--------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 352 (412)
T 1w5s_A 285 LVRKAVSENE--------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV---KPRGY 352 (412)
T ss_dssp HHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC---CCCCH
T ss_pred HHHHHHHHHh--------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC---CCCCH
Confidence 3333322210 0 22344466789999999998888764 23345555555444210 00000 00112
Q ss_pred HHHHHHHHHHhhCCCcccc
Q 046301 140 ELGRKSFQVLHSRSFFQWS 158 (404)
Q Consensus 140 ~~~~~~~~~L~~~sli~~~ 158 (404)
.....+++.|.+.++|...
T Consensus 353 ~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 353 TQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEee
Confidence 4456789999999999764
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.12 E-value=0.48 Score=44.17 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=76.7
Q ss_pred hhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-c
Q 046301 249 FHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-I 327 (404)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~ 327 (404)
...|.++..|+.+.+..+...--...+..+..|+.+.+. +.++.++.. .+.++.+|+.+.+..+ +..+... |
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF 330 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG--ITQILDDAF 330 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc--ccEehHhHh
Confidence 345777788888887654432223456677888888885 456666654 5778889999998764 6667654 8
Q ss_pred cccccccccCceEeccCCcCCc--cccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301 328 GKLTSLRTLAKFVVGKGNCYGL--KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395 (404)
Q Consensus 328 ~~l~~L~~L~~~~~~~~~~~~~--~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (404)
.++++|+.+.+ .. +...+ ..+.++++|+ .+.+.+. ... ...+..+.+|+.+.+.-+
T Consensus 331 ~~C~~L~~i~i---p~-sv~~I~~~aF~~C~~L~-~i~~~~~-----~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 331 AGCEQLERIAI---PS-SVTKIPESAFSNCTALN-NIEYSGS-----RSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCTTCCEEEE---CT-TCCBCCGGGGTTCTTCC-EEEESSC-----HHH--HHTCBCCCCC--------
T ss_pred hCCCCCCEEEE---Cc-ccCEEhHhHhhCCCCCC-EEEECCc-----eee--hhhhhccCCCCEEEeCCC
Confidence 88888888733 21 11122 3466777888 7777541 111 234677888888877543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.08 E-value=0.3 Score=45.25 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=43.0
Q ss_pred hhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cc
Q 046301 251 VVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG 328 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~ 328 (404)
.|.++..|+.+.+.. .+..++ ..+..+.+|+.+.+.++.++.++.. .+.++.+|+.+.+..+ +..++.. |.
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~aF~ 330 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTA--LKTIQVYAFK 330 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCcc--ccEEHHHHhh
Confidence 445555555555543 233333 2345556666666666666655543 4566666666666543 4555433 55
Q ss_pred cccccccc
Q 046301 329 KLTSLRTL 336 (404)
Q Consensus 329 ~l~~L~~L 336 (404)
++++|+.+
T Consensus 331 ~C~~L~~i 338 (379)
T 4h09_A 331 NCKALSTI 338 (379)
T ss_dssp TCTTCCCC
T ss_pred CCCCCCEE
Confidence 66666655
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.31 E-value=0.12 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.6
Q ss_pred cccEEEecCCCccccCcc-cccCCCcceEecCCCCcc
Q 046301 257 QLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIE 292 (404)
Q Consensus 257 ~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~ 292 (404)
+|+.|+|++|.|+.+|.. +..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 689999999999999865 578999999999999764
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.94 E-value=0.28 Score=45.80 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=61.9
Q ss_pred hhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301 248 VFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR 326 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 326 (404)
....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+++..+ ++.+... .+.++.+|+.+.+..+ +..++..
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~ 360 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS--LRKIGAN 360 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT--CCEECTT
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc--ccEehHH
Confidence 3456788889999998754 55554 45778889999998644 6666554 5888999999999765 6777654
Q ss_pred -ccccccccccCc
Q 046301 327 -IGKLTSLRTLAK 338 (404)
Q Consensus 327 -~~~l~~L~~L~~ 338 (404)
+.++++|+.+.+
T Consensus 361 aF~~C~~L~~i~l 373 (394)
T 4fs7_A 361 AFQGCINLKKVEL 373 (394)
T ss_dssp TBTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 888889988843
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.93 E-value=0.65 Score=43.28 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=8.1
Q ss_pred hhccCccccEEEecCC
Q 046301 251 VVPRLRQLRVVSLCGY 266 (404)
Q Consensus 251 ~~~~l~~L~~L~l~~~ 266 (404)
.+..+..|+.+.+..+
T Consensus 248 ~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 248 VFYGCTDLESISIQNN 263 (394)
T ss_dssp TTTTCSSCCEEEECCT
T ss_pred cccccccceeEEcCCC
Confidence 3445555555555443
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.08 E-value=0.68 Score=43.12 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=73.2
Q ss_pred cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCC
Q 046301 220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESK 298 (404)
Q Consensus 220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~ 298 (404)
.+.++..|+.+.+.... ..+....|.++..|+.+.+. +.+..++. .+..+.+|+.+++..+ ++.+...
T Consensus 260 aF~~c~~L~~i~lp~~~--------~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~- 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV--------VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD- 328 (394)
T ss_dssp TTTTCSSCCEEECCTTC--------CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT-
T ss_pred eeeecccccEEeccccc--------ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh-
Confidence 34566777777664322 23445568888999999986 45666654 4677889999999754 6655544
Q ss_pred CCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301 299 LFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK 338 (404)
Q Consensus 299 ~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~ 338 (404)
.+.++.+|+.+.+..+ +..++.. |.++++|+.+.+
T Consensus 329 ---aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 329 ---AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp ---TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred ---HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 5888999999999764 6777654 888999998843
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.11 E-value=0.67 Score=42.82 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=47.2
Q ss_pred hhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-c
Q 046301 250 HVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-I 327 (404)
Q Consensus 250 ~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~ 327 (404)
..|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++.. .+.++.+|+.+.+..+ .+..++.. +
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCT-TCCEECTTTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc----cccccccccccccccc-ccceehhhhh
Confidence 34555666666666543 33332 23445666777666433 4444433 4667777888877665 56666544 6
Q ss_pred cccccccccC
Q 046301 328 GKLTSLRTLA 337 (404)
Q Consensus 328 ~~l~~L~~L~ 337 (404)
.++++|+.+.
T Consensus 307 ~~c~~L~~i~ 316 (379)
T 4h09_A 307 MDCVKLSSVT 316 (379)
T ss_dssp TTCTTCCEEE
T ss_pred cCCCCCCEEE
Confidence 7777777663
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.42 E-value=0.16 Score=42.51 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=41.0
Q ss_pred hhhhhccCccccEEEecCC-Ccc-----ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301 248 VFHVVPRLRQLRVVSLCGY-KIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
+...+.+-+.|+.|+|+++ .|. .+-..+..=..|+.|+|++|.|..---..+-..+..-+.|++|+|+.|
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3444556677888888875 554 233445555678888888887752110011112334467888888877
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.96 E-value=1.2 Score=39.97 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=73.7
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcC--------CChhHHHHHHhhhh
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK--------YDPKDWEDVLTSKI 73 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~--------~~~~~w~~~l~~~~ 73 (404)
++.+++.+|..+++.+.+..... ... .+....++++|+|.|-.+..+...+... -+.+..+.++...
T Consensus 164 ~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~- 238 (324)
T 1hqc_A 164 HLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL- 238 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH-
T ss_pred ecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-
Confidence 57889999999998887643321 111 3667889999999998887776654321 1222333322221
Q ss_pred hhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCc-----------eeChhHHHH----HHHHCCCcccCCCCCcH
Q 046301 74 WDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGY-----------RFDERQIVL----LWMAEGLLQHETYGKQM 138 (404)
Q Consensus 74 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~-----------~i~~~~li~----~w~~~g~~~~~~~~~~~ 138 (404)
...+..++..++..+..++....+- .+++..+.+ +-+..|++.....+...
T Consensus 239 --------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~ 304 (324)
T 1hqc_A 239 --------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVP 304 (324)
T ss_dssp --------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEE
T ss_pred --------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcccee
Confidence 1123344444555554433222221 233333322 34567787654455566
Q ss_pred HHHHHHHHH-HHhhCCCccc
Q 046301 139 EELGRKSFQ-VLHSRSFFQW 157 (404)
Q Consensus 139 ~~~~~~~~~-~L~~~sli~~ 157 (404)
.+.|..+++ ++.+|+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 305 TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp CHHHHHHTTCCCCC------
T ss_pred cHHHHHHHhcCCCCCCCCCC
Confidence 677888887 8888888764
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.77 E-value=14 Score=33.47 Aligned_cols=137 Identities=9% Similarity=-0.032 Sum_probs=78.8
Q ss_pred CCCCCCChhhHHHHHHHcc---cCCCCCCCCccHHHHHHHHHHhcC---CCch-hHHHHHHHhh-----c--CCChhHHH
Q 046301 1 HSLRNLLRDDCLCIFVQHS---LGRTDFVAHQYLSEIGEKIVDRCN---GSPL-AAKTLGSLLR-----D--KYDPKDWE 66 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~~~l~~~i~~~c~---GlPL-al~~~g~~L~-----~--~~~~~~w~ 66 (404)
+++++++.++..+++.+.+ +.... ..+ +....++++++ |.|- |+.++..+.. + .-+.+.++
T Consensus 196 i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 196 LVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred EeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 4678999999999999874 33222 222 34556666666 9993 3333333221 1 12355555
Q ss_pred HHHhhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCC-ceeChhHHHHHHH----HCCCcccCCCCCcHHHH
Q 046301 67 DVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKG-YRFDERQIVLLWM----AEGLLQHETYGKQMEEL 141 (404)
Q Consensus 67 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~-~~i~~~~li~~w~----~~g~~~~~~~~~~~~~~ 141 (404)
.++... ....+.-++..|+...+..++.++....+ ..+...++.+... ..| .. ......
T Consensus 271 ~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~ 334 (387)
T 2v1u_A 271 SARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE-----HVTLRR 334 (387)
T ss_dssp HHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC-----CCCHHH
T ss_pred HHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC-----CCCHHH
Confidence 555443 12345667889999888887777744333 2344443333221 122 11 112356
Q ss_pred HHHHHHHHhhCCCcccc
Q 046301 142 GRKSFQVLHSRSFFQWS 158 (404)
Q Consensus 142 ~~~~~~~L~~~sli~~~ 158 (404)
+..+++.|...++++..
T Consensus 335 ~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 335 VSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCeEEE
Confidence 67789999999999863
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.40 E-value=1.1 Score=37.38 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=56.9
Q ss_pred cCCCCccEEEeccc-CccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCC
Q 046301 222 HKVEYLRTFLALLL-GTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLP 295 (404)
Q Consensus 222 ~~~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp 295 (404)
.+-+.|+.|.+..+ . ........+.+.+..-..|+.|+|++|.+.. +-..+..=+.|+.|+|++|.|..--
T Consensus 38 ~~n~~L~~L~L~~nn~---igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR---VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCS---SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCC---CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34567888887653 2 1111223345667777899999999999862 2334444567999999999886210
Q ss_pred CCCCCccccccccCceeecCCC
Q 046301 296 ESKLFPDVGNLVNLRHLKDSHS 317 (404)
Q Consensus 296 ~~~~p~~~~~l~~L~~L~l~~~ 317 (404)
-..+-..+..-+.|++|+|++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 0011112334456888888765
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.13 E-value=3.1 Score=34.97 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=39.2
Q ss_pred CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHh
Q 046301 1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLL 56 (404)
Q Consensus 1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L 56 (404)
+++++++.+|..+++.+.+..... ... ++....+++.|+|.|..+..+...+
T Consensus 180 i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 357899999999999988753321 111 3567889999999999988877644
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.28 E-value=30 Score=31.36 Aligned_cols=135 Identities=10% Similarity=-0.072 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHHcc---cCCCCCCCCccHHHHHHHHHHhcC---CCch-hHHHHHHHh--h---cCCChhHHHHHH
Q 046301 2 SLRNLLRDDCLCIFVQHS---LGRTDFVAHQYLSEIGEKIVDRCN---GSPL-AAKTLGSLL--R---DKYDPKDWEDVL 69 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~~~l~~~i~~~c~---GlPL-al~~~g~~L--~---~~~~~~~w~~~l 69 (404)
++++++.++..++|...+ |.... ..+ +....+++.|+ |.|. |+..+-.+. + ..-+.+.++.++
T Consensus 193 ~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~ 267 (384)
T 2qby_B 193 IFKPYDAEQLKFILSKYAEYGLIKGT--YDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAI 267 (384)
T ss_dssp EECCCCHHHHHHHHHHHHHHTSCTTS--CCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHhhcccCC--cCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 578999999999999874 33222 222 44566777776 8776 444443332 1 123466666665
Q ss_pred hhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHH
Q 046301 70 TSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVL 149 (404)
Q Consensus 70 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L 149 (404)
+... ...+..++..|+...|..+..++....+-.+. ......--..| .. .........++..|
T Consensus 268 ~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~~~~~~~~~l~~L 330 (384)
T 2qby_B 268 VDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PLSYRRFSDIISEL 330 (384)
T ss_dssp HHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CCCHHHHHHHHHHH
T ss_pred HHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CCCHHHHHHHHHHH
Confidence 5431 23466677889888887776666511101111 01111111222 11 11225566789999
Q ss_pred hhCCCcccc
Q 046301 150 HSRSFFQWS 158 (404)
Q Consensus 150 ~~~sli~~~ 158 (404)
.++++++..
T Consensus 331 ~~~gli~~~ 339 (384)
T 2qby_B 331 DMFGIVKIR 339 (384)
T ss_dssp HHTTSEEEE
T ss_pred HhCCCEEEE
Confidence 999999763
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=45.04 E-value=1.1e+02 Score=27.42 Aligned_cols=137 Identities=11% Similarity=0.019 Sum_probs=74.8
Q ss_pred CCCCCChhhHHHHHHHccc---CCCCCCCCccHHHHHHHHHHhc---------CCCchhHHHHHHHhh------cC--CC
Q 046301 2 SLRNLLRDDCLCIFVQHSL---GRTDFVAHQYLSEIGEKIVDRC---------NGSPLAAKTLGSLLR------DK--YD 61 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af---~~~~~~~~~~~~~l~~~i~~~c---------~GlPLal~~~g~~L~------~~--~~ 61 (404)
++++++.++..+++...+- .... .. .+....+++.+ +|.|-.+..+..... +. -+
T Consensus 189 ~~~pl~~~~~~~~l~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~ 263 (389)
T 1fnn_A 189 RFSPYTKDQIFDILLDRAKAGLAEGS--YS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIA 263 (389)
T ss_dssp ECCCCBHHHHHHHHHHHHHHHBCTTS--SC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EeCCCCHHHHHHHHHHHHHhhcCCCC--CC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 5788999999999987752 2221 11 35677888888 787755444433221 11 11
Q ss_pred hhHHHHHHhhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCC---CCceeChhHHHHHHHH----CCCcccCCC
Q 046301 62 PKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLP---KGYRFDERQIVLLWMA----EGLLQHETY 134 (404)
Q Consensus 62 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~li~~w~~----~g~~~~~~~ 134 (404)
.+....+..... ...+.-.+..|+...|.++..++.+. .+..+....+...+.. .|...
T Consensus 264 ~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 329 (389)
T 1fnn_A 264 PEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP---- 329 (389)
T ss_dssp HHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC----
Confidence 222222222210 11123335668877777776666554 2224555555554433 22111
Q ss_pred CCcHHHHHHHHHHHHhhCCCccccc
Q 046301 135 GKQMEELGRKSFQVLHSRSFFQWSK 159 (404)
Q Consensus 135 ~~~~~~~~~~~~~~L~~~sli~~~~ 159 (404)
-.......+++.|.++++|....
T Consensus 330 --~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 330 --RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp --CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred --CCHHHHHHHHHHHHhCCCeEEee
Confidence 01244567899999999998743
No 177
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=32.78 E-value=23 Score=18.07 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.5
Q ss_pred cCCCchhHHHHHHHhhcC
Q 046301 42 CNGSPLAAKTLGSLLRDK 59 (404)
Q Consensus 42 c~GlPLal~~~g~~L~~~ 59 (404)
-.-+|||..+.|+.+..+
T Consensus 8 rrklplavav~agv~~aq 25 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCTHHHHHHHHTTCCC
T ss_pred cccCchHHHHHHHHhHhh
Confidence 356899999999988655
No 178
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=31.56 E-value=1.3e+02 Score=26.67 Aligned_cols=135 Identities=9% Similarity=-0.042 Sum_probs=73.3
Q ss_pred CCCCCChhhHHHHHHHcc---cCCCCCCCCccHHHHHHHHHHhcC---CCchhHHHH-HHHhh-----c--CCChhHHHH
Q 046301 2 SLRNLLRDDCLCIFVQHS---LGRTDFVAHQYLSEIGEKIVDRCN---GSPLAAKTL-GSLLR-----D--KYDPKDWED 67 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~~~l~~~i~~~c~---GlPLal~~~-g~~L~-----~--~~~~~~w~~ 67 (404)
++++++.++..+++.+.+ +... ... .+....+++.++ |.|..+..+ ..+.. + .-+.+.++.
T Consensus 193 ~l~~l~~~~~~~il~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~ 267 (386)
T 2qby_A 193 IFPPYNAEELEDILTKRAQMAFKPG--VLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYM 267 (386)
T ss_dssp EECCCCHHHHHHHHHHHHHHHBCSS--CSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhccCC--CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHH
Confidence 578999999999998764 2211 112 355666777776 988844333 32221 1 123445554
Q ss_pred HHhhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCC-Cc-eeChhHHHHHHH--H--CCCcccCCCCCcHHHH
Q 046301 68 VLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPK-GY-RFDERQIVLLWM--A--EGLLQHETYGKQMEEL 141 (404)
Q Consensus 68 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~-~~-~i~~~~li~~w~--~--~g~~~~~~~~~~~~~~ 141 (404)
++... ....+.-.+..++...+..+..++...+ +. .+...++...+. + .| +.. .....
T Consensus 268 a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~-----~~~~~ 331 (386)
T 2qby_A 268 AKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEA-----VTQRR 331 (386)
T ss_dssp HHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCC-----CCHHH
T ss_pred HHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCC-----CCHHH
Confidence 44432 1235666778888888887777775433 21 133333322221 1 12 111 11234
Q ss_pred HHHHHHHHhhCCCccc
Q 046301 142 GRKSFQVLHSRSFFQW 157 (404)
Q Consensus 142 ~~~~~~~L~~~sli~~ 157 (404)
...+++.|.++++++.
T Consensus 332 ~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 332 VSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCEEE
Confidence 5567888888888865
No 179
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=28.83 E-value=37 Score=27.48 Aligned_cols=52 Identities=6% Similarity=-0.116 Sum_probs=36.1
Q ss_pred CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhh
Q 046301 2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLR 57 (404)
Q Consensus 2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~ 57 (404)
++++++.++..+++.+.+...+. ... .+....+++.++|.|..+..+...+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57899999999999887642221 111 35667888999999987666555443
No 180
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=26.11 E-value=1.7e+02 Score=20.45 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHcccCCCCCCCCccH-HHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHh
Q 046301 14 IFVQHSLGRTDFVAHQYL-SEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLT 70 (404)
Q Consensus 14 Lf~~~af~~~~~~~~~~~-~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~ 70 (404)
=|.....++.++..-+.+ +.+++++.+ .|..-|=+++|.+|--+++.+..+.-+.
T Consensus 9 ~Fv~EPmgeK~V~evpGIG~~~~~~L~~--~Gf~kAy~lLGqFL~l~kd~~~F~~WLk 64 (89)
T 1ci4_A 9 DFVAEPMGEKPVGSLAGIGEVLGKKLEE--RGFDKAYVVLGQFLVLKKDEDLFREWLK 64 (89)
T ss_dssp HHHTSCCTTCCGGGSTTCCHHHHHHHHH--TTCCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhCCCCCCCcccCCCcCHHHHHHHHH--cCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 355555555555444444 456666666 8999999999999988767554444443
Done!