Query 046308
Match_columns 171
No_of_seqs 121 out of 887
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 2.9E-43 6.4E-48 288.0 18.8 148 16-166 78-234 (236)
2 PF00139 Lectin_legB: Legume l 100.0 1.9E-42 4.2E-47 282.7 15.5 149 14-165 77-236 (236)
3 cd01951 lectin_L-type legume l 100.0 5.2E-35 1.1E-39 236.3 19.1 143 16-166 70-223 (223)
4 cd07308 lectin_leg-like legume 99.7 1.7E-15 3.7E-20 122.3 17.3 147 6-165 57-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.5 2.5E-12 5.4E-17 104.9 17.5 147 6-166 59-223 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.1 5E-09 1.1E-13 86.7 17.0 137 16-166 74-222 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 99.0 2.7E-08 5.7E-13 80.8 16.1 130 16-166 74-213 (215)
8 PF03388 Lectin_leg-like: Legu 98.8 7.1E-08 1.5E-12 78.8 12.1 145 6-164 59-225 (229)
9 cd06900 lectin_VcfQ VcfQ bacte 98.4 8.1E-05 1.7E-09 61.4 17.6 145 15-164 73-253 (255)
10 KOG3838 Mannose lectin ERGIC-5 98.3 1.9E-05 4.2E-10 68.8 12.5 139 16-166 107-254 (497)
11 KOG3839 Lectin VIP36, involved 97.8 0.00023 5E-09 60.9 11.0 142 8-163 115-271 (351)
12 smart00282 LamG Laminin G doma 58.1 65 0.0014 22.9 10.2 26 92-119 57-82 (135)
13 cd00110 LamG Laminin G domain; 47.0 1E+02 0.0022 21.9 10.5 25 93-119 76-100 (151)
14 smart00159 PTX Pentraxin / C-r 32.0 65 0.0014 25.4 3.7 28 92-119 85-112 (206)
15 PHA02104 hypothetical protein 29.1 39 0.00085 23.0 1.6 18 93-110 54-71 (89)
16 smart00560 LamGL LamG-like jel 28.4 84 0.0018 22.7 3.5 23 97-119 61-83 (133)
17 PF13619 KTSC: KTSC domain 27.6 72 0.0015 20.2 2.6 18 102-119 7-24 (60)
18 cd00152 PTX Pentraxins are pla 24.6 1E+02 0.0022 24.2 3.5 26 94-119 87-112 (201)
19 PF10049 DUF2283: Protein of u 22.8 1E+02 0.0022 18.8 2.6 16 103-118 2-17 (50)
20 PF02306 Phage_G: Major spike 22.6 1.3E+02 0.0027 23.8 3.5 22 7-28 42-65 (179)
21 KOG3514 Neurexin III-alpha [Si 22.2 8.9E+02 0.019 25.1 10.3 50 91-145 914-963 (1591)
22 PF02210 Laminin_G_2: Laminin 20.2 1.7E+02 0.0036 19.9 3.7 25 92-118 49-73 (128)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=2.9e-43 Score=287.96 Aligned_cols=148 Identities=32% Similarity=0.586 Sum_probs=130.8
Q ss_pred CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCC-----CCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcccccccccC
Q 046308 16 MGWHLFLHLLTTPHQLKATAHISESWMNLPKGE-----DMHQIAVELDAYKN-DF-DLDGNHVAIDIKSVRQPVALESLN 88 (171)
Q Consensus 16 ~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~-----~~~~vAVEFDT~~n-~~-Dp~~nHVgIdins~~~S~~t~~~~ 88 (171)
.+||||||||+++ ... +++..|++|||.+.. .++.|||||||++| ++ ||+.|||||++|++. |..+..+.
T Consensus 78 ~~gdGlAF~i~~~-~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~-S~~~~~~~ 154 (236)
T cd06899 78 LGGDGLAFFLAPT-DSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLV-SVKAGYWD 154 (236)
T ss_pred CCCCeEEEEEecC-CCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcc-cceeeccc
Confidence 5799999999954 332 337899999998743 34899999999999 66 999999999999998 88887776
Q ss_pred CCccccCCCceEEEEEEEcCCcCeEEEEEEeCC--CCCceeeEEeeecCCCCCCeEEEEEecccCCcccceEEEEEEEee
Q 046308 89 STGVDLKSGRNITVRIECNGWQNLLYVNVHYAD--HPPKNVIKQPINISDIVPSSVYVGFTAATGAFSESHQLLEWSLTS 166 (171)
Q Consensus 89 ~~~~~l~~G~~~~a~I~Yd~~~~~L~V~l~~~~--~~~~p~ls~~vdL~~~l~~~v~VGFSAsTG~~~~~h~IlsWsF~s 166 (171)
.....|.+|+.++|||+||+.+++|+|+|.... +|..|+|+..+||+.+|+++|||||||+||...|.|+|++|+|++
T Consensus 155 ~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s 234 (236)
T cd06899 155 DDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSS 234 (236)
T ss_pred cccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEc
Confidence 545668999999999999999999999999854 788999999999999999999999999999999999999999987
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=1.9e-42 Score=282.68 Aligned_cols=149 Identities=29% Similarity=0.476 Sum_probs=126.2
Q ss_pred ecCCCCeEEEEEECCCCCCCCCCCCCCcccCCCCC-----CCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcccccccc
Q 046308 14 LEMGWHLFLHLLTTPHQLKATAHISESWMNLPKGE-----DMHQIAVELDAYKN-DF-DLDGNHVAIDIKSVRQPVALES 86 (171)
Q Consensus 14 ~~~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~-----~~~~vAVEFDT~~n-~~-Dp~~nHVgIdins~~~S~~t~~ 86 (171)
...+||||||||++.. ..+.++.|++|||.+.. .+++||||||||+| ++ ||+.+||||++|++. +..+.+
T Consensus 77 ~~~~~dGlAFvi~~~~--~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~-s~~~~~ 153 (236)
T PF00139_consen 77 SNNGGDGLAFVIQPDP--NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVV-SNKTAS 153 (236)
T ss_dssp SSS-BEEEEEEEEETT--SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSS-ESEEEE
T ss_pred CccCCCceEEEEecCc--ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCc-cccccc
Confidence 3466999999999553 34556799999998632 34799999999999 55 999999999999998 777754
Q ss_pred cC---CCccccCCCceEEEEEEEcCCcCeEEEEEEeC-CCCCceeeEEeeecCCCCCCeEEEEEecccCCcccceEEEEE
Q 046308 87 LN---STGVDLKSGRNITVRIECNGWQNLLYVNVHYA-DHPPKNVIKQPINISDIVPSSVYVGFTAATGAFSESHQLLEW 162 (171)
Q Consensus 87 ~~---~~~~~l~~G~~~~a~I~Yd~~~~~L~V~l~~~-~~~~~p~ls~~vdL~~~l~~~v~VGFSAsTG~~~~~h~IlsW 162 (171)
+. .....+.+|+.+.|||+||+.+++|+|++... .+|..|+|+..+||+.+|+++||||||||||.+.|.|.|++|
T Consensus 154 ~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW 233 (236)
T PF00139_consen 154 AGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNSSKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSW 233 (236)
T ss_dssp ----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETTTTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred ccccccccccccCCcEEEEEEEEcCCccEEEEEEecccCCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEE
Confidence 42 23577899999999999999999999999996 588899999999999999999999999999999999999999
Q ss_pred EEe
Q 046308 163 SLT 165 (171)
Q Consensus 163 sF~ 165 (171)
+|+
T Consensus 234 ~F~ 236 (236)
T PF00139_consen 234 SFS 236 (236)
T ss_dssp EEE
T ss_pred EeC
Confidence 996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=5.2e-35 Score=236.33 Aligned_cols=143 Identities=29% Similarity=0.391 Sum_probs=116.7
Q ss_pred CCCCeEEEEEECCCCCCCCCCCCC--CcccCCCCCCCcEEEEEEeCCCC-CC-CCCCCeEEEecCCCcccc-------cc
Q 046308 16 MGWHLFLHLLTTPHQLKATAHISE--SWMNLPKGEDMHQIAVELDAYKN-DF-DLDGNHVAIDIKSVRQPV-------AL 84 (171)
Q Consensus 16 ~ggDG~AFvl~~~~~~~~~~~~~G--~~LGl~~~~~~~~vAVEFDT~~n-~~-Dp~~nHVgIdins~~~S~-------~t 84 (171)
.+||||||+|++.... +.+.+| ++||+.... +.+|||||||+| ++ ||+.+||||++|+.. +. ..
T Consensus 70 ~~gdG~aF~l~~~~~~--~~~~~g~~~~lG~~~~~--~~~aVefDT~~N~~~~dp~~~higi~~n~~~-~~~~~~~~~~~ 144 (223)
T cd01951 70 NGADGIAFVLQNDPAG--ALGGGGGGGGLGYGGIG--NSVAVEFDTYKNDDNNDPNGNHISIDVNGNG-NNTALATSLGS 144 (223)
T ss_pred CCCCcEEEEEecCCCC--ccccCCCCCccCccccC--CeEEEEEeccccCCCCCCCCCEEEEEcCCCC-CCcccccccce
Confidence 5799999999954332 234444 899987543 699999999999 54 999999999999875 42 12
Q ss_pred cccCCCccccCCCceEEEEEEEcCCcCeEEEEEEeCCCCCceeeEEeeecCCCCCCeEEEEEecccCCcccceEEEEEEE
Q 046308 85 ESLNSTGVDLKSGRNITVRIECNGWQNLLYVNVHYADHPPKNVIKQPINISDIVPSSVYVGFTAATGAFSESHQLLEWSL 164 (171)
Q Consensus 85 ~~~~~~~~~l~~G~~~~a~I~Yd~~~~~L~V~l~~~~~~~~p~ls~~vdL~~~l~~~v~VGFSAsTG~~~~~h~IlsWsF 164 (171)
..++ ....+|+.++|||+|++.+++|+|+|.....|..|+++.++||+..++++||||||||||...+.|+|++|+|
T Consensus 145 ~~~~---~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf 221 (223)
T cd01951 145 ASLP---NGTGLGNEHTVRITYDPTTNTLTVYLDNGSTLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSF 221 (223)
T ss_pred eeCC---CccCCCCEEEEEEEEeCCCCEEEEEECCCCccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEe
Confidence 2221 2222389999999999999999999987555678999999999999999999999999999999999999999
Q ss_pred ee
Q 046308 165 TS 166 (171)
Q Consensus 165 ~s 166 (171)
++
T Consensus 222 ~~ 223 (223)
T cd01951 222 TS 223 (223)
T ss_pred cC
Confidence 74
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.70 E-value=1.7e-15 Score=122.26 Aligned_cols=147 Identities=21% Similarity=0.298 Sum_probs=93.4
Q ss_pred eeEEEEEeec------CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCCCCCCCCCeEEEecCCCc
Q 046308 6 RSIQIQLTLE------MGWHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKNDFDLDGNHVAIDIKSVR 79 (171)
Q Consensus 6 ~~~~~~~~~~------~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n~~Dp~~nHVgIdins~~ 79 (171)
..|.+.+++. .+||||||++++. . ...|..+|..+.. +.+||||||++|. +-...+|.+.+|.-.
T Consensus 57 ~~F~~~f~F~i~~~~~~~gdG~af~~~~~-~-----~~~g~~~G~~~~~--~Glai~fdt~~n~-~~~~p~i~~~~Ndg~ 127 (218)
T cd07308 57 KDFEIEVEFSIHGGSGLGGDGFAFWYTEE-P-----GSDGPLFGGPDKF--KGLAIFFDTYDND-GKGFPSISVFLNDGT 127 (218)
T ss_pred CCEEEEEEEEEeCCCCCCCCEEEEEEECC-C-----CCCCcccccCCCC--CEEEEEEEcCCCC-CCCCCeEEEEEeCCC
Confidence 3555555543 4689999999943 2 2355678876533 6999999999984 233456666655221
Q ss_pred cccc------ccccCCCccccCC-CceEEEEEEEcCCcCeEEEEEEeCCCCCceeeEEeeecCCCCCCeEEEEEecccCC
Q 046308 80 QPVA------LESLNSTGVDLKS-GRNITVRIECNGWQNLLYVNVHYADHPPKNVIKQPINISDIVPSSVYVGFTAATGA 152 (171)
Q Consensus 80 ~S~~------t~~~~~~~~~l~~-G~~~~a~I~Yd~~~~~L~V~l~~~~~~~~p~ls~~vdL~~~l~~~v~VGFSAsTG~ 152 (171)
++.. ...+..-.+...+ ++..+++|.|+ .+.|.|.+.... +........++. ..+++.+|+||||+||.
T Consensus 128 ~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~~-~~~~~~c~~~~~-~~l~~~~y~G~sA~tg~ 203 (218)
T cd07308 128 KSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYSE-GNNWKECFTVED-VILPSQGYFGFSAQTGD 203 (218)
T ss_pred ceecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCCC-CCCccEEEEcCC-cccCCCCEEEEEeccCC
Confidence 0211 0111100122222 67899999999 568999987532 111222322222 14678899999999999
Q ss_pred cccceEEEEEEEe
Q 046308 153 FSESHQLLEWSLT 165 (171)
Q Consensus 153 ~~~~h~IlsWsF~ 165 (171)
..+.|+|++|.+.
T Consensus 204 ~~d~~dIls~~~~ 216 (218)
T cd07308 204 LSDNHDILSVHTY 216 (218)
T ss_pred CcCcEEEEEEEee
Confidence 9999999999875
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.50 E-value=2.5e-12 Score=104.92 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=92.7
Q ss_pred eeEEEEEeec------CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCCCCCCCCCeEEEecCCCc
Q 046308 6 RSIQIQLTLE------MGWHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKNDFDLDGNHVAIDIKSVR 79 (171)
Q Consensus 6 ~~~~~~~~~~------~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n~~Dp~~nHVgIdins~~ 79 (171)
..|+|.+++. .+||||||+++... +..|..+|..+.. .-+||.|||+.|.-..+...|.+..|.-.
T Consensus 59 ~~w~ie~~Fri~g~~~~~gdG~a~W~t~~~------~~~G~~~G~~~~f--~Gl~I~~Dt~~n~~~~~~p~i~~~~NDGt 130 (225)
T cd06902 59 ENWEVEVTFRVTGRGRIGADGLAIWYTKER------GEEGPVFGSSDKW--NGVGIFFDSFDNDGKKNNPAILVVGNDGT 130 (225)
T ss_pred CCEEEEEEEEEecCCCCCCCEEEEEEECCC------CCCCCccCCCCcc--cEEEEEEECCCCCCCCCCcEEEEEECCCC
Confidence 3455555544 35899999999542 2356778887644 48999999998732233456766654211
Q ss_pred cccccc-c-----cCCCccccCC-CceEEEEEEEcCCcCeEEEEEEeCCCCC----ceeeEEeeecCC-CCCCeEEEEEe
Q 046308 80 QPVALE-S-----LNSTGVDLKS-GRNITVRIECNGWQNLLYVNVHYADHPP----KNVIKQPINISD-IVPSSVYVGFT 147 (171)
Q Consensus 80 ~S~~t~-~-----~~~~~~~l~~-G~~~~a~I~Yd~~~~~L~V~l~~~~~~~----~p~ls~~vdL~~-~l~~~v~VGFS 147 (171)
...... . +..-....++ ..+..++|.|... .|.|.++...++. .-|+. +.. .||...|+|||
T Consensus 131 ~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~~--~l~V~~d~~~~~~~~~~~~Cf~----~~~v~LP~~~yfGiS 204 (225)
T cd06902 131 KSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQN--VLTVSINNGFTPNKDDYELCTR----VENMVLPPNGYFGVS 204 (225)
T ss_pred eeccccCCCcccccceEEEeccCCCCCeEEEEEEECC--eEEEEEeCCcCCCCCcccEEEe----cCCeeCCCCCEEEEE
Confidence 022111 0 1100122333 3578899999994 5888887422222 22332 222 35778999999
Q ss_pred cccCCcccceEEEEEEEee
Q 046308 148 AATGAFSESHQLLEWSLTS 166 (171)
Q Consensus 148 AsTG~~~~~h~IlsWsF~s 166 (171)
|+||...+.|+|++|.+.+
T Consensus 205 A~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 205 AATGGLADDHDVLSFLTFS 223 (225)
T ss_pred ecCCCCCCcEeEEEEEEec
Confidence 9999999999999999876
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.14 E-value=5e-09 Score=86.70 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=83.6
Q ss_pred CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCC-C--CCCCCCeEEEecC-CCcccccc------c
Q 046308 16 MGWHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKN-D--FDLDGNHVAIDIK-SVRQPVAL------E 85 (171)
Q Consensus 16 ~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n-~--~Dp~~nHVgIdin-s~~~S~~t------~ 85 (171)
.+||||||++... . ...|..+|..+.- .-+||-|||+.| . .....+-|.+.+| +.. .... .
T Consensus 74 ~~GdGlAfw~t~~-~-----~~~G~~fG~~~~f--~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~-~yd~~~Dg~~~ 144 (248)
T cd06901 74 LFGDGFAIWYTKE-R-----MQPGPVFGSKDNF--HGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSL-SYDHDRDGTHT 144 (248)
T ss_pred CCCCEEEEEEEcC-C-----CccCcccccCCCC--ceEEEEEECCCCCCCcccCCCceEEEEEcCCCe-eecccCCCchh
Confidence 5689999999854 2 2345556666533 489999999998 2 1223334544444 222 2111 1
Q ss_pred ccCCCccccC-CCceEEEEEEEcCCcCeEEEEEEeCCCCC-ceeeEEeeecCCCCCCeEEEEEecccCCcccceEEEEEE
Q 046308 86 SLNSTGVDLK-SGRNITVRIECNGWQNLLYVNVHYADHPP-KNVIKQPINISDIVPSSVYVGFTAATGAFSESHQLLEWS 163 (171)
Q Consensus 86 ~~~~~~~~l~-~G~~~~a~I~Yd~~~~~L~V~l~~~~~~~-~p~ls~~vdL~~~l~~~v~VGFSAsTG~~~~~h~IlsWs 163 (171)
.+..-...++ .+....++|.|... .|.|.++...+.. ..|+... .-.||...|+||||+||...+.|+|++-.
T Consensus 145 ~~~~C~~~~rn~~~~t~~rI~Y~~~--~l~v~vd~~~~~~w~~Cf~~~---~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~ 219 (248)
T cd06901 145 ELAGCSAPFRNKDHDTFVAIRYSKG--RLTVMTDIDGKNEWKECFDVT---GVRLPTGYYFGASAATGDLSDNHDIISMK 219 (248)
T ss_pred hcCceeeeccCCCCCeEEEEEEECC--eEEEEEecCCCCceeeeEEeC---CeecCCCCEEEEEecCCCCCCcEEEEEEE
Confidence 1110011222 23456799999974 5777776533222 3344331 11357779999999999999999999988
Q ss_pred Eee
Q 046308 164 LTS 166 (171)
Q Consensus 164 F~s 166 (171)
+..
T Consensus 220 ~~~ 222 (248)
T cd06901 220 LYE 222 (248)
T ss_pred Eec
Confidence 776
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.02 E-value=2.7e-08 Score=80.80 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCCeEEEEEECCCCCCCCCCCCC-CcccCCCCCCCcEEEEEEeCCCCCCCCCCCeEEEecC-CCcccccccc-----cC
Q 046308 16 MGWHLFLHLLTTPHQLKATAHISE-SWMNLPKGEDMHQIAVELDAYKNDFDLDGNHVAIDIK-SVRQPVALES-----LN 88 (171)
Q Consensus 16 ~ggDG~AFvl~~~~~~~~~~~~~G-~~LGl~~~~~~~~vAVEFDT~~n~~Dp~~nHVgIdin-s~~~S~~t~~-----~~ 88 (171)
.+||||||++...... ..| ..+|-.+.- .-+||.|||+.|. ...|.+..| +.. ...... ++
T Consensus 74 ~~gdGla~W~t~~~~~-----~~g~~~fG~~~~f--~Gl~I~~Dt~~n~----~p~i~~~~NDGt~-~yd~~~d~~~~~g 141 (215)
T cd06903 74 RSGGGLNFWLVKDGNA-----DVGTSSIYGPSKF--DGLQLLIDNNGGS----GGSLRGFLNDGSK-DYKNEDVDSLAFG 141 (215)
T ss_pred cCCCEEEEEEECCCcc-----cCCccccCCCCCC--cEEEEEEECCCCC----CceEEEEECCCCe-eccccCCcccccc
Confidence 5699999999954221 122 344444333 4899999999761 233444443 222 221111 11
Q ss_pred CCcccc-CCCceEEEEEEEcCCcCeEEEEEEeCCCCCceeeEE-eeecCCCCC-CeEEEEEecccCCcccceEEEEEEEe
Q 046308 89 STGVDL-KSGRNITVRIECNGWQNLLYVNVHYADHPPKNVIKQ-PINISDIVP-SSVYVGFTAATGAFSESHQLLEWSLT 165 (171)
Q Consensus 89 ~~~~~l-~~G~~~~a~I~Yd~~~~~L~V~l~~~~~~~~p~ls~-~vdL~~~l~-~~v~VGFSAsTG~~~~~h~IlsWsF~ 165 (171)
.=.... ..+.+.+++|.|....+.|+|.++. +.|+.. .+.| | ...|+||||+||...+.|+|++-.+.
T Consensus 142 ~C~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~-----~~Cf~~~~v~l----P~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 142 SCLFAYQDSGVPSTIRLSYDALNSLFKVQVDN-----RLCFQTDKVQL----PQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred eeeEeccCCCCCEEEEEEEECCCCEEEEEECC-----CEEEecCCeec----CCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 001122 3455789999999977788888753 235543 2444 5 45679999999999999999987654
Q ss_pred e
Q 046308 166 S 166 (171)
Q Consensus 166 s 166 (171)
.
T Consensus 213 ~ 213 (215)
T cd06903 213 N 213 (215)
T ss_pred c
Confidence 3
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=98.82 E-value=7.1e-08 Score=78.81 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=84.5
Q ss_pred eeEEEEEeec-------CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCCCC---CCCCCeEEEec
Q 046308 6 RSIQIQLTLE-------MGWHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKNDF---DLDGNHVAIDI 75 (171)
Q Consensus 6 ~~~~~~~~~~-------~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n~~---Dp~~nHVgIdi 75 (171)
..|++.+++. .+||||||++.... ...|..+|..+.- .-++|=||||.|.- .-....|.+.+
T Consensus 59 ~~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~------~~~G~~fG~~~~f--~Gl~i~idt~~N~~~~~~~~~p~i~~~~ 130 (229)
T PF03388_consen 59 DNWEIEFTFRISGQEKGLGGDGMAFWYTKDP------GSDGPVFGGPDKF--DGLGIFIDTYDNDEGGHKRGFPYISAML 130 (229)
T ss_dssp SEEEEEEEEEEESS-SSS-S-EEEEEEESSS------SSSCSBTTB-SS---EEEEEEEEES-TTCTTCTSTSSEEEEEE
T ss_pred cCEEEEEEEEEeccccCcCCCeEEEEEEcCc------cccccccCCCccc--ceEEEEEEcccCCCcccccccceEEEEe
Confidence 4455555532 47899999998442 2366777766433 58999999999822 12345666666
Q ss_pred CCCcccccccc------cCCCccccCC-CceEEEEEEEcCCcCeEEEEEEeC----CCCCceeeEE-eeecCCCCCCeEE
Q 046308 76 KSVRQPVALES------LNSTGVDLKS-GRNITVRIECNGWQNLLYVNVHYA----DHPPKNVIKQ-PINISDIVPSSVY 143 (171)
Q Consensus 76 ns~~~S~~t~~------~~~~~~~l~~-G~~~~a~I~Yd~~~~~L~V~l~~~----~~~~~p~ls~-~vdL~~~l~~~v~ 143 (171)
|.-..+..... +..-...+++ .....++|.|... .|.|.++.. ...-..|+.. .+. ||+..|
T Consensus 131 NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v~----LP~~~y 204 (229)
T PF03388_consen 131 NDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGVD----LPEGYY 204 (229)
T ss_dssp EESSS---GGGTTTTT-SEEEE---BTESSEEEEEEEEETT--EEEEEEETSCCSECCTTEEEEEESTEE----GGSSBE
T ss_pred cCCCccccccccCcccccccceeccCcCCCCEEEEEEEECC--eEEEEEecccccCCcCCcEEEEcCCee----cCCCCE
Confidence 52110211111 1100122333 4567899999986 477777731 1223456654 344 467789
Q ss_pred EEEecccCCcccceEEEEEEE
Q 046308 144 VGFTAATGAFSESHQLLEWSL 164 (171)
Q Consensus 144 VGFSAsTG~~~~~h~IlsWsF 164 (171)
+||||+||...+.|+|++-..
T Consensus 205 fGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 205 FGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp EEEEEEESSSGGEEEEEEEEE
T ss_pred EEEEecCCCCCCcEEEEEEEE
Confidence 999999999999999997543
No 9
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=98.36 E-value=8.1e-05 Score=61.38 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=81.3
Q ss_pred cCCCCeEEEEEECCCCCCCCCCCCCCcccCCCCC------CCcEEEEEEeCCCC-C--CCC-----C--CCeEEEecCCC
Q 046308 15 EMGWHLFLHLLTTPHQLKATAHISESWMNLPKGE------DMHQIAVELDAYKN-D--FDL-----D--GNHVAIDIKSV 78 (171)
Q Consensus 15 ~~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~------~~~~vAVEFDT~~n-~--~Dp-----~--~nHVgIdins~ 78 (171)
..||||+||||..- .-...+|..|+.|||.... .-..+.|-||-|-| . -|. . -+.|+|. +.
T Consensus 73 g~GADGia~vLsDa-sv~p~~G~fGGsLGYa~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vR--Gs 149 (255)
T cd06900 73 GNGADGVALVLSDA-SVTPQAGAFGGSLGYAQRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVR--GS 149 (255)
T ss_pred CCCCceEEEEEeCC-CcCCcCCCcCcccccccccCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEEE--CC
Confidence 57899999999832 2111358899999997521 12588899999887 2 122 1 2445544 22
Q ss_pred cccc--cc------cccCCCccccCC----CceEEEEEEEcCCc---CeEEEEEEeCCCC-CceeeEE--eeecC--CCC
Q 046308 79 RQPV--AL------ESLNSTGVDLKS----GRNITVRIECNGWQ---NLLYVNVHYADHP-PKNVIKQ--PINIS--DIV 138 (171)
Q Consensus 79 ~~S~--~t------~~~~~~~~~l~~----G~~~~a~I~Yd~~~---~~L~V~l~~~~~~-~~p~ls~--~vdL~--~~l 138 (171)
. +. .. ..++ +.++..+ ...|.=+|+-|+.. ..|+|.-+..... ..+++.. .++.. .-+
T Consensus 150 g-~g~~gY~yl~gt~~~~-~~id~~~~~~~~~~hrY~i~Ids~~~~~~~vsV~R~~~~gg~~~~~I~~~d~~~~~~q~av 227 (255)
T cd06900 150 G-SGYTGYKYITGTGVLP-PGIDNNSTSTPAPGHRYRITIDSTNGDNAWLSVERDIGNGGAYFVVILTFDALAEQNQDAI 227 (255)
T ss_pred C-CCCcCceEecccCCCC-cccccCCCCCCCCceEEEEEEecCCCCceEEEEEEEccCCceeEEeecceeeccccCCCCC
Confidence 2 21 00 1111 1111111 12355566666652 2345544432211 1223211 12222 457
Q ss_pred CCeEEEEEecccCCcccceEEEEEEE
Q 046308 139 PSSVYVGFTAATGAFSESHQLLEWSL 164 (171)
Q Consensus 139 ~~~v~VGFSAsTG~~~~~h~IlsWsF 164 (171)
|+..+++|++|||.....|+|-..+.
T Consensus 228 P~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 228 PENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred CccEEEEEEecCCCcccceeecceEe
Confidence 89999999999999999999976554
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=1.9e-05 Score=68.79 Aligned_cols=139 Identities=19% Similarity=0.279 Sum_probs=82.9
Q ss_pred CCCCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCCCCCCCCCeEEEecCCCcccccccc------cCC
Q 046308 16 MGWHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKNDFDLDGNHVAIDIKSVRQPVALES------LNS 89 (171)
Q Consensus 16 ~ggDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n~~Dp~~nHVgIdins~~~S~~t~~------~~~ 89 (171)
.|||||||.-....+ --|.-+|=.+.=+ -+++=||.+.|+---|+.-|.+-.|.-..+..... +++
T Consensus 107 iGAdGlaiWYt~~~G------~~GpVfGg~d~Wn--GigiffDSfdnD~qknnP~Is~~lndGt~~ydh~~DGasQ~Lss 178 (497)
T KOG3838|consen 107 IGADGLAIWYTRGRG------HVGPVFGGLDSWN--GIGIFFDSFDNDGQKNNPAISVLLNDGTIPYDHPGDGASQGLSS 178 (497)
T ss_pred ccCCceEEEEecCCC------ccccccccccccc--ceEEEeecccccCCcCCccEEEEecCCcccccCCCccHHHHHHH
Confidence 569999999874433 3333344332222 67899999987222244556666553210222111 110
Q ss_pred CccccCCCc-eEEEEEEEcCCcCeEEEEEEeCCCCC-ceeeEEeeecCC-CCCCeEEEEEecccCCcccceEEEEEEEee
Q 046308 90 TGVDLKSGR-NITVRIECNGWQNLLYVNVHYADHPP-KNVIKQPINISD-IVPSSVYVGFTAATGAFSESHQLLEWSLTS 166 (171)
Q Consensus 90 ~~~~l~~G~-~~~a~I~Yd~~~~~L~V~l~~~~~~~-~p~ls~~vdL~~-~l~~~v~VGFSAsTG~~~~~h~IlsWsF~s 166 (171)
--.+++|.- +..|+|+|=. ++|+|-+...-.|. .+=+...+ .. .||..-|+|.||+||+...-|+|++..-.+
T Consensus 179 CqrDFRNkPyPvRarItY~~--nvLtv~innGmtp~d~yE~C~rv--e~~~lp~nGyFGvSAATGgLADDHDVl~Fltfs 254 (497)
T KOG3838|consen 179 CQRDFRNKPYPVRARITYYG--NVLTVMINNGMTPSDDYEFCVRV--ENLLLPPNGYFGVSAATGGLADDHDVLSFLTFS 254 (497)
T ss_pred hhHHhccCCCCceEEEEEec--cEEEEEEcCCCCCCCCcceeEec--cceeccCCCeeeeeecccccccccceeeeEEee
Confidence 012344432 5789999977 47999887632333 22233332 22 358899999999999999999999876444
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00023 Score=60.90 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=80.5
Q ss_pred EEEEEeecCC---CCeEEEEEECCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeCCCCCCCCC---CCeEEEecCC-Ccc
Q 046308 8 IQIQLTLEMG---WHLFLHLLTTPHQLKATAHISESWMNLPKGEDMHQIAVELDAYKNDFDLD---GNHVAIDIKS-VRQ 80 (171)
Q Consensus 8 ~~~~~~~~~g---gDG~AFvl~~~~~~~~~~~~~G~~LGl~~~~~~~~vAVEFDT~~n~~Dp~---~nHVgIdins-~~~ 80 (171)
+++|+.-..+ |||||+..... . ...|..+|-.+.. +.+||=.|||-|...|. ..-|...+|- ..
T Consensus 115 v~fkv~~~s~~lfgdG~Aiw~t~E-r-----~q~GPvFG~~dkF--~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~- 185 (351)
T KOG3839|consen 115 VHFKVHGQSKNLFGDGMAIWYTKE-R-----AQPGPVFGSKDKF--TGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSL- 185 (351)
T ss_pred EEEEEecCCCcccccceEEEeecc-c-----ccCCCCCCCcccc--eeEEEEEeccCCcCCCcccceeeEEEEeccCCc-
Confidence 3455554333 89999999733 2 2256777776533 57999999998733221 2333433321 11
Q ss_pred cccc------cccCCCccccCCCc-eEEEEEEEcCCcCeEEEEEEeCCCCCceeeEEeeecCC-CCCCeEEEEEecccCC
Q 046308 81 PVAL------ESLNSTGVDLKSGR-NITVRIECNGWQNLLYVNVHYADHPPKNVIKQPINISD-IVPSSVYVGFTAATGA 152 (171)
Q Consensus 81 S~~t------~~~~~~~~~l~~G~-~~~a~I~Yd~~~~~L~V~l~~~~~~~~p~ls~~vdL~~-~l~~~v~VGFSAsTG~ 152 (171)
|... +.+..-...+++.. ...+-|.|+. ++|++..+..++.. ...-.+|.+ .+|.--|+|+||+||.
T Consensus 186 sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~iry~~--~~l~~~~dl~~~~~---~~~c~~~n~v~lp~g~~fg~SasTGd 260 (351)
T KOG3839|consen 186 SYDHSKDGTHTELAGCTANFRNLPHDTLVVIRYEK--KTLSISIDLEGPNE---WIDCFSLNNVELPLGYFFGVSASTGD 260 (351)
T ss_pred ccccCCCCCccccccceeeeccCCCcceeEEEecC--CceEEEEecCCCce---eeeeeeecceecccceEEeeeeccCc
Confidence 2111 11110012233332 2457889998 55666666543221 222233433 3577789999999999
Q ss_pred cccceEEEEEE
Q 046308 153 FSESHQLLEWS 163 (171)
Q Consensus 153 ~~~~h~IlsWs 163 (171)
..+.|+|.+-.
T Consensus 261 lSd~HdivS~k 271 (351)
T KOG3839|consen 261 LSDSHDIVSLK 271 (351)
T ss_pred cchhhHHHHhh
Confidence 99999998643
No 12
>smart00282 LamG Laminin G domain.
Probab=58.06 E-value=65 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred cccCCCceEEEEEEEcCCcCeEEEEEEe
Q 046308 92 VDLKSGRNITVRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 92 ~~l~~G~~~~a~I~Yd~~~~~L~V~l~~ 119 (171)
..+.+|++|++.|.++... +.+.++.
T Consensus 57 ~~~~dg~WH~v~i~~~~~~--~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNGRR--VTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeCCE--EEEEECC
Confidence 4688999999999999754 5555553
No 13
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=47.02 E-value=1e+02 Score=21.92 Aligned_cols=25 Identities=28% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccCCCceEEEEEEEcCCcCeEEEEEEe
Q 046308 93 DLKSGRNITVRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 93 ~l~~G~~~~a~I~Yd~~~~~L~V~l~~ 119 (171)
.+.+|++|++.|.++.. .+.++++.
T Consensus 76 ~v~dg~Wh~v~i~~~~~--~~~l~VD~ 100 (151)
T cd00110 76 PLNDGQWHSVSVERNGR--SVTLSVDG 100 (151)
T ss_pred ccCCCCEEEEEEEECCC--EEEEEECC
Confidence 58899999999999984 56666654
No 14
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=32.05 E-value=65 Score=25.43 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=25.1
Q ss_pred cccCCCceEEEEEEEcCCcCeEEEEEEe
Q 046308 92 VDLKSGRNITVRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 92 ~~l~~G~~~~a~I~Yd~~~~~L~V~l~~ 119 (171)
..+.+|+.+++-++||+.+..+.++++.
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG 112 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDG 112 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECC
Confidence 4577999999999999999999999975
No 15
>PHA02104 hypothetical protein
Probab=29.08 E-value=39 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred ccCCCceEEEEEEEcCCc
Q 046308 93 DLKSGRNITVRIECNGWQ 110 (171)
Q Consensus 93 ~l~~G~~~~a~I~Yd~~~ 110 (171)
.-.+|+..+|.|+|++..
T Consensus 54 fa~~gkiynatidynak~ 71 (89)
T PHA02104 54 FAQNGKIYNATIDYNAKR 71 (89)
T ss_pred ehhCCeEEeeEEccCceE
Confidence 356899999999999964
No 16
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=28.36 E-value=84 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=21.1
Q ss_pred CceEEEEEEEcCCcCeEEEEEEe
Q 046308 97 GRNITVRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 97 G~~~~a~I~Yd~~~~~L~V~l~~ 119 (171)
|+.+++.+.||+.+..|+++++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 88999999999998899999975
No 17
>PF13619 KTSC: KTSC domain
Probab=27.65 E-value=72 Score=20.18 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=15.9
Q ss_pred EEEEEcCCcCeEEEEEEe
Q 046308 102 VRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 102 a~I~Yd~~~~~L~V~l~~ 119 (171)
..|.||..++.|.|.+..
T Consensus 7 ~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 7 RSVGYDPETRTLEVEFKS 24 (60)
T ss_pred cEEeECCCCCEEEEEEcC
Confidence 479999999999999964
No 18
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=24.59 E-value=1e+02 Score=24.17 Aligned_cols=26 Identities=8% Similarity=-0.039 Sum_probs=24.0
Q ss_pred cCCCceEEEEEEEcCCcCeEEEEEEe
Q 046308 94 LKSGRNITVRIECNGWQNLLYVNVHY 119 (171)
Q Consensus 94 l~~G~~~~a~I~Yd~~~~~L~V~l~~ 119 (171)
..+|+.+++-++||+.+..+.++++.
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG 112 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNG 112 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECC
Confidence 47899999999999999999999986
No 19
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=22.81 E-value=1e+02 Score=18.80 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=14.6
Q ss_pred EEEEcCCcCeEEEEEE
Q 046308 103 RIECNGWQNLLYVNVH 118 (171)
Q Consensus 103 ~I~Yd~~~~~L~V~l~ 118 (171)
||+||...-.|-+++.
T Consensus 2 ki~YD~~~D~lyi~l~ 17 (50)
T PF10049_consen 2 KIEYDPEADALYIRLS 17 (50)
T ss_pred EeEEcCcCCEEEEEEC
Confidence 7999999999999994
No 20
>PF02306 Phage_G: Major spike protein (G protein); InterPro: IPR003515 This is a family of proteins from single-stranded DNA bacteriophages. The G protein is a major spike protein involved in attachment to the bacterial host cell. The virion is composed of sixty copies of each of the F, G and J proteins, and 12 copies of the H protein. There are twelve spikes formed by five G proteins, each a tight beta barrel, and one H protein.; GO: 0019048 virus-host interaction; PDB: 1GFF_2 1RB8_G 1M06_G 1CD3_G 2BPA_2 1AL0_G.
Probab=22.59 E-value=1.3e+02 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=15.5
Q ss_pred eEEEEEeecCC--CCeEEEEEECC
Q 046308 7 SIQIQLTLEMG--WHLFLHLLTTP 28 (171)
Q Consensus 7 ~~~~~~~~~~g--gDG~AFvl~~~ 28 (171)
+|+|.++...+ ++||||++.-+
T Consensus 42 t~~~~~t~~a~t~~~Gf~~v~~~D 65 (179)
T PF02306_consen 42 TIFIALTTTAATTHSGFAHVQRMD 65 (179)
T ss_dssp EEEEEEEE-SEESSCEEEEEEE--
T ss_pred EEEEEeEeeeeccCCceEEEEEec
Confidence 57788877766 59999999955
No 21
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=22.22 E-value=8.9e+02 Score=25.12 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=28.8
Q ss_pred ccccCCCceEEEEEEEcCCcCeEEEEEEeCCCCCceeeEEeeecCCCCCCeEEEE
Q 046308 91 GVDLKSGRNITVRIECNGWQNLLYVNVHYADHPPKNVIKQPINISDIVPSSVYVG 145 (171)
Q Consensus 91 ~~~l~~G~~~~a~I~Yd~~~~~L~V~l~~~~~~~~p~ls~~vdL~~~l~~~v~VG 145 (171)
...|+|.++|+|-|.=|.. +.=.+.++ ++.....+...++| -|...+|+|
T Consensus 914 r~hlnDnrWHnV~I~rd~~-~~HtL~vD--~s~~t~~~~g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 914 RQHLNDNRWHNVLIYRDKT-NTHTLKVD--NSSTTQIIDGAVNL--DLKGKLYIG 963 (1591)
T ss_pred cCcCccccceeEEEEcCCC-CceEEEec--CceEEEEecCcccc--ccccceecc
Confidence 4678899999999988843 33333333 23334445444443 235566666
No 22
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=20.24 E-value=1.7e+02 Score=19.93 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.4
Q ss_pred cccCCCceEEEEEEEcCCcCeEEEEEE
Q 046308 92 VDLKSGRNITVRIECNGWQNLLYVNVH 118 (171)
Q Consensus 92 ~~l~~G~~~~a~I~Yd~~~~~L~V~l~ 118 (171)
..+.+|++|.+.|.++... +.+.++
T Consensus 49 ~~~~dg~wh~v~i~~~~~~--~~l~Vd 73 (128)
T PF02210_consen 49 SNLNDGQWHKVSISRDGNR--VTLTVD 73 (128)
T ss_dssp SSSTSSSEEEEEEEEETTE--EEEEET
T ss_pred ccccccceeEEEEEEeeee--EEEEec
Confidence 4578999999999999986 445444
Done!