BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046312
         (514 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 405

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 25/113 (22%)

Query: 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEM 357
           TW     G+A+H +   A    +N     I  N          C   G ++DG       
Sbjct: 163 TWQPRA-GIAKHDHVAWAFARKANEXGVDIIQN----------CEVTGFIKDG------- 204

Query: 358 EHVHGIKPMRIHYHTMADILARAGH---LKEAYTFIMNMPFQPNPIVLRALLS 407
           E V G+K  R   H     LA AGH   L E   F   +P Q +P  L+AL+S
Sbjct: 205 EKVTGVKTTRGTIHAGKVALAGAGHSSVLAEXAGF--ELPIQSHP--LQALVS 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,123,031
Number of Sequences: 62578
Number of extensions: 605489
Number of successful extensions: 1311
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 3
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)