Query 046312
Match_columns 514
No_of_seqs 536 out of 3173
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.4E-74 3E-79 597.2 59.0 484 24-513 119-605 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 5.3E-72 1.2E-76 591.5 58.3 484 22-513 282-768 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.2E-66 9.2E-71 546.6 46.9 466 22-506 181-652 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3E-62 6.4E-67 508.2 49.8 463 28-505 370-873 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.6E-61 1.6E-65 497.7 51.4 439 26-472 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.9E-57 1.5E-61 465.6 41.2 451 30-509 89-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-27 2.6E-32 258.6 47.8 445 38-506 444-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.1E-27 1.3E-31 253.1 47.5 416 74-510 443-868 (899)
9 PRK11447 cellulose synthase su 99.9 1E-19 2.2E-24 198.2 46.5 451 33-509 120-701 (1157)
10 KOG4626 O-linked N-acetylgluco 99.9 1.6E-20 3.4E-25 175.0 30.9 377 59-451 115-505 (966)
11 PRK11447 cellulose synthase su 99.9 8.9E-19 1.9E-23 190.9 48.9 413 38-468 282-744 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.3E-19 1.2E-23 181.0 39.9 250 209-465 308-571 (615)
13 PRK11788 tetratricopeptide rep 99.9 3E-19 6.6E-24 173.6 33.7 295 139-472 45-354 (389)
14 PRK11788 tetratricopeptide rep 99.9 2E-19 4.3E-24 174.9 31.5 255 204-466 44-312 (389)
15 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.4E-24 167.7 29.2 361 95-470 117-490 (966)
16 PRK15174 Vi polysaccharide exp 99.9 4.6E-18 9.9E-23 173.6 41.5 352 74-436 17-386 (656)
17 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4.2E-22 172.6 42.3 186 276-464 248-455 (765)
18 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.5E-21 166.9 45.4 401 24-437 14-462 (765)
19 PRK15174 Vi polysaccharide exp 99.8 7E-17 1.5E-21 164.9 42.1 327 130-467 43-383 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-17 4.6E-22 169.3 35.9 391 97-510 130-573 (615)
21 PRK09782 bacteriophage N4 rece 99.8 5.2E-16 1.1E-20 162.3 41.3 445 35-509 118-707 (987)
22 PRK14574 hmsH outer membrane p 99.8 1.7E-15 3.8E-20 155.2 44.1 414 39-465 48-513 (822)
23 KOG4422 Uncharacterized conser 99.8 2.1E-15 4.6E-20 135.3 37.9 443 28-502 119-619 (625)
24 PRK14574 hmsH outer membrane p 99.8 2.5E-14 5.5E-19 146.7 43.7 394 30-437 73-519 (822)
25 PRK09782 bacteriophage N4 rece 99.8 7.9E-14 1.7E-18 146.1 48.0 418 32-466 189-707 (987)
26 KOG2002 TPR-containing nuclear 99.7 1.7E-14 3.6E-19 142.1 29.6 400 91-507 267-708 (1018)
27 KOG1915 Cell cycle control pro 99.7 3.8E-13 8.2E-18 122.5 34.6 435 57-510 70-538 (677)
28 KOG2002 TPR-containing nuclear 99.7 3.8E-13 8.1E-18 132.8 37.0 436 57-510 267-747 (1018)
29 KOG0495 HAT repeat protein [RN 99.7 5.8E-12 1.2E-16 119.3 41.3 414 74-505 418-877 (913)
30 KOG2076 RNA polymerase III tra 99.7 1.1E-13 2.3E-18 135.6 29.2 363 136-505 146-552 (895)
31 KOG4422 Uncharacterized conser 99.7 6.8E-13 1.5E-17 119.4 31.0 398 95-505 117-587 (625)
32 KOG2003 TPR repeat-containing 99.7 1.4E-12 3E-17 118.3 32.3 380 60-452 201-710 (840)
33 PF13429 TPR_15: Tetratricopep 99.6 1.7E-15 3.8E-20 139.6 10.7 254 202-463 15-275 (280)
34 PRK10747 putative protoheme IX 99.6 2.4E-12 5.2E-17 124.2 29.4 284 107-431 97-390 (398)
35 KOG1155 Anaphase-promoting com 99.6 1.4E-10 3.1E-15 105.8 38.2 213 265-510 330-555 (559)
36 TIGR00540 hemY_coli hemY prote 99.6 8.5E-13 1.8E-17 128.1 25.8 285 208-505 97-396 (409)
37 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.2E-19 132.6 12.7 253 101-357 15-274 (280)
38 KOG0495 HAT repeat protein [RN 99.6 1.9E-10 4.2E-15 109.2 39.0 366 96-476 518-889 (913)
39 PRK10747 putative protoheme IX 99.6 3.1E-11 6.8E-16 116.5 33.4 275 177-464 97-389 (398)
40 TIGR00540 hemY_coli hemY prote 99.6 8.1E-12 1.8E-16 121.2 29.0 286 107-430 97-398 (409)
41 KOG2076 RNA polymerase III tra 99.5 2E-10 4.3E-15 113.2 37.6 458 33-508 147-695 (895)
42 KOG0547 Translocase of outer m 99.5 2.1E-11 4.6E-16 111.8 27.9 214 241-463 337-564 (606)
43 KOG1155 Anaphase-promoting com 99.5 9E-11 2E-15 107.1 30.1 341 74-432 176-537 (559)
44 COG2956 Predicted N-acetylgluc 99.5 4.7E-11 1E-15 104.0 26.8 267 108-409 49-325 (389)
45 COG2956 Predicted N-acetylgluc 99.5 5.1E-11 1.1E-15 103.8 26.4 222 61-292 37-276 (389)
46 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.5E-14 100.2 35.4 451 41-512 89-589 (677)
47 COG3071 HemY Uncharacterized e 99.5 7.3E-11 1.6E-15 106.0 26.2 276 177-463 97-388 (400)
48 KOG1126 DNA-binding cell divis 99.5 1.6E-11 3.5E-16 117.1 23.1 276 179-467 334-622 (638)
49 KOG2003 TPR repeat-containing 99.5 6.6E-11 1.4E-15 107.6 25.9 363 96-467 200-691 (840)
50 KOG1126 DNA-binding cell divis 99.5 2.2E-11 4.7E-16 116.2 22.5 279 144-437 334-626 (638)
51 COG3071 HemY Uncharacterized e 99.4 9.7E-10 2.1E-14 98.9 30.6 287 107-431 97-390 (400)
52 KOG4318 Bicoid mRNA stability 99.4 7.1E-10 1.5E-14 108.9 32.0 395 46-469 11-598 (1088)
53 KOG2047 mRNA splicing factor [ 99.4 8.5E-09 1.8E-13 98.1 35.1 417 59-496 168-711 (835)
54 TIGR02521 type_IV_pilW type IV 99.4 2E-10 4.2E-15 103.0 23.0 198 264-465 30-232 (234)
55 KOG4318 Bicoid mRNA stability 99.4 3.7E-11 8E-16 117.7 18.2 253 216-507 11-264 (1088)
56 KOG1173 Anaphase-promoting com 99.3 5.4E-09 1.2E-13 98.1 29.5 395 55-465 44-518 (611)
57 KOG1840 Kinesin light chain [C 99.3 9.3E-10 2E-14 106.1 25.1 230 231-463 200-477 (508)
58 PF13041 PPR_2: PPR repeat fam 99.3 6.6E-12 1.4E-16 81.4 6.7 50 193-242 1-50 (50)
59 KOG0547 Translocase of outer m 99.3 9E-09 1.9E-13 95.0 28.8 348 74-433 127-568 (606)
60 KOG1174 Anaphase-promoting com 99.3 4.8E-08 1E-12 88.4 31.6 364 62-437 99-506 (564)
61 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 79.9 6.9 50 294-343 1-50 (50)
62 PRK12370 invasion protein regu 99.3 3.6E-09 7.7E-14 106.9 26.1 258 127-394 254-533 (553)
63 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 96.6 21.7 190 95-288 32-226 (234)
64 KOG4162 Predicted calmodulin-b 99.2 1.1E-07 2.5E-12 92.7 32.5 404 49-466 312-784 (799)
65 PRK12370 invasion protein regu 99.2 9.2E-09 2E-13 103.9 26.4 257 194-466 255-536 (553)
66 KOG1129 TPR repeat-containing 99.2 1.8E-09 3.9E-14 94.4 17.1 224 236-467 229-460 (478)
67 KOG2047 mRNA splicing factor [ 99.2 1.3E-06 2.8E-11 83.7 37.1 393 60-463 102-613 (835)
68 KOG1156 N-terminal acetyltrans 99.2 2.4E-07 5.2E-12 88.7 32.4 419 74-511 53-514 (700)
69 PF12569 NARP1: NMDA receptor- 99.2 1E-08 2.2E-13 100.2 23.5 187 314-511 129-337 (517)
70 KOG1173 Anaphase-promoting com 99.2 3.9E-08 8.6E-13 92.5 26.1 267 101-375 251-530 (611)
71 KOG1129 TPR repeat-containing 99.2 4.4E-09 9.5E-14 92.1 18.1 256 173-436 188-463 (478)
72 KOG2376 Signal recognition par 99.2 2.2E-06 4.8E-11 81.4 37.0 403 39-463 26-518 (652)
73 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3E-13 94.0 22.1 189 267-467 66-267 (296)
74 PF12569 NARP1: NMDA receptor- 99.1 2E-07 4.3E-12 91.3 28.5 126 333-464 196-333 (517)
75 KOG4340 Uncharacterized conser 99.1 5.5E-08 1.2E-12 84.2 21.1 387 61-466 11-444 (459)
76 KOG1840 Kinesin light chain [C 99.1 5.4E-08 1.2E-12 94.1 22.8 193 201-393 247-476 (508)
77 KOG1156 N-terminal acetyltrans 99.1 4.4E-06 9.6E-11 80.3 34.7 413 39-464 55-510 (700)
78 COG3063 PilF Tfp pilus assembl 99.1 2.9E-08 6.2E-13 83.1 17.8 163 298-467 37-204 (250)
79 KOG3785 Uncharacterized conser 99.0 7.9E-06 1.7E-10 72.9 33.1 406 39-467 36-492 (557)
80 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-07 7.4E-12 84.7 25.2 187 132-325 67-265 (296)
81 KOG4162 Predicted calmodulin-b 99.0 1.2E-06 2.6E-11 85.8 29.0 123 372-506 655-781 (799)
82 KOG0624 dsRNA-activated protei 99.0 2.3E-07 5E-12 82.1 21.8 241 239-514 164-427 (504)
83 KOG3616 Selective LIM binding 99.0 2.1E-07 4.6E-12 90.1 23.4 209 237-475 739-947 (1636)
84 KOG1174 Anaphase-promoting com 99.0 7.3E-06 1.6E-10 74.6 31.5 265 191-466 228-501 (564)
85 KOG0548 Molecular co-chaperone 99.0 1.1E-06 2.3E-11 82.7 26.8 371 74-467 14-457 (539)
86 COG3063 PilF Tfp pilus assembl 98.9 6.7E-07 1.5E-11 75.1 21.3 186 199-389 39-229 (250)
87 cd05804 StaR_like StaR_like; a 98.9 5.1E-06 1.1E-10 79.7 31.2 296 95-394 7-334 (355)
88 KOG3785 Uncharacterized conser 98.9 8.1E-06 1.8E-10 72.8 27.7 428 40-511 72-552 (557)
89 PF04733 Coatomer_E: Coatomer 98.9 8.2E-08 1.8E-12 87.5 15.4 251 172-436 9-270 (290)
90 KOG2376 Signal recognition par 98.9 4.2E-05 9.2E-10 73.0 33.1 382 65-467 17-489 (652)
91 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.6E-10 77.1 31.2 188 131-323 8-213 (355)
92 PF04733 Coatomer_E: Coatomer 98.9 2.1E-07 4.5E-12 84.9 17.7 218 168-394 39-263 (290)
93 KOG3617 WD40 and TPR repeat-co 98.8 1.6E-05 3.6E-10 78.4 30.4 356 59-461 725-1170(1416)
94 PRK04841 transcriptional regul 98.8 1.5E-05 3.3E-10 86.6 34.2 325 139-466 384-761 (903)
95 KOG4340 Uncharacterized conser 98.8 1.8E-06 3.9E-11 75.1 20.9 311 128-462 9-336 (459)
96 KOG0624 dsRNA-activated protei 98.8 2.7E-05 5.8E-10 69.4 27.4 312 59-397 37-372 (504)
97 KOG0985 Vesicle coat protein c 98.8 2.7E-05 5.9E-10 78.6 29.6 125 63-190 609-750 (1666)
98 PRK04841 transcriptional regul 98.8 4.2E-05 9E-10 83.3 34.4 328 103-434 383-763 (903)
99 KOG1125 TPR repeat-containing 98.7 5.3E-07 1.2E-11 85.4 16.2 218 241-464 296-526 (579)
100 KOG3617 WD40 and TPR repeat-co 98.7 6.3E-05 1.4E-09 74.5 29.2 207 57-292 754-994 (1416)
101 PF12854 PPR_1: PPR repeat 98.7 4.7E-08 1E-12 56.8 4.5 33 362-394 2-34 (34)
102 KOG1914 mRNA cleavage and poly 98.7 0.00018 3.9E-09 68.2 30.0 129 57-190 17-163 (656)
103 KOG0985 Vesicle coat protein c 98.6 0.00026 5.7E-09 71.8 31.9 366 45-456 967-1374(1666)
104 PRK10370 formate-dependent nit 98.6 6.4E-06 1.4E-10 71.0 18.7 150 303-467 23-175 (198)
105 KOG1070 rRNA processing protei 98.6 2E-05 4.3E-10 82.2 24.1 201 264-471 1457-1669(1710)
106 KOG1125 TPR repeat-containing 98.6 1.8E-05 4E-10 75.3 21.9 248 138-390 294-565 (579)
107 TIGR03302 OM_YfiO outer membra 98.6 8.2E-06 1.8E-10 73.2 19.2 183 263-466 31-233 (235)
108 KOG1128 Uncharacterized conser 98.6 2E-05 4.3E-10 77.1 22.4 220 261-507 394-615 (777)
109 KOG3616 Selective LIM binding 98.6 0.0002 4.3E-09 70.3 28.3 47 418-466 979-1025(1636)
110 KOG0548 Molecular co-chaperone 98.6 4.5E-05 9.8E-10 72.1 23.2 348 102-466 10-422 (539)
111 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.4E-12 54.5 4.3 32 260-291 2-33 (34)
112 KOG1128 Uncharacterized conser 98.5 0.00012 2.7E-09 71.8 25.5 232 160-409 394-633 (777)
113 KOG1070 rRNA processing protei 98.5 5.1E-05 1.1E-09 79.3 23.9 230 194-430 1457-1699(1710)
114 COG4783 Putative Zn-dependent 98.5 0.00017 3.8E-09 67.7 24.6 179 263-466 272-455 (484)
115 COG4783 Putative Zn-dependent 98.5 0.00021 4.5E-09 67.1 24.9 197 280-510 252-456 (484)
116 PRK14720 transcript cleavage f 98.5 9E-05 2E-09 76.7 24.6 233 131-410 33-268 (906)
117 KOG3081 Vesicle coat complex C 98.5 0.0002 4.4E-09 61.8 22.7 176 252-436 95-276 (299)
118 KOG1127 TPR repeat-containing 98.4 0.00017 3.7E-09 73.1 24.6 109 347-461 799-909 (1238)
119 KOG2053 Mitochondrial inherita 98.4 0.0024 5.2E-08 64.5 32.2 389 65-468 46-505 (932)
120 PRK15359 type III secretion sy 98.4 7.7E-06 1.7E-10 66.6 12.6 94 370-466 27-122 (144)
121 KOG3081 Vesicle coat complex C 98.4 0.0002 4.3E-09 61.9 21.0 170 216-394 94-269 (299)
122 PRK14720 transcript cleavage f 98.4 0.00012 2.6E-09 75.8 23.1 233 163-447 30-268 (906)
123 PLN02789 farnesyltranstransfer 98.4 0.00019 4.2E-09 66.5 22.4 232 197-463 39-300 (320)
124 TIGR03302 OM_YfiO outer membra 98.4 4.7E-05 1E-09 68.2 18.0 183 227-433 30-234 (235)
125 KOG1127 TPR repeat-containing 98.3 0.0016 3.4E-08 66.5 29.2 176 282-462 800-993 (1238)
126 KOG1914 mRNA cleavage and poly 98.3 0.0033 7.2E-08 60.0 35.2 78 26-106 18-98 (656)
127 PLN02789 farnesyltranstransfer 98.3 0.00053 1.1E-08 63.7 24.0 174 99-277 42-229 (320)
128 PRK15359 type III secretion sy 98.3 1.4E-05 3E-10 65.1 12.1 122 317-447 14-137 (144)
129 KOG3060 Uncharacterized conser 98.3 0.00026 5.6E-09 60.7 19.4 131 307-440 97-229 (289)
130 COG5010 TadD Flp pilus assembl 98.3 0.00065 1.4E-08 58.8 21.7 156 234-394 70-229 (257)
131 PRK15179 Vi polysaccharide bio 98.3 0.00019 4E-09 73.6 21.5 160 294-467 84-247 (694)
132 COG5010 TadD Flp pilus assembl 98.3 0.00019 4.1E-09 62.0 18.1 150 304-459 74-225 (257)
133 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.4E-11 50.7 4.3 35 95-129 1-35 (35)
134 PRK10370 formate-dependent nit 98.2 0.00026 5.6E-09 61.1 18.1 150 273-437 24-179 (198)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.9E-05 1.9E-09 70.2 16.2 125 266-394 170-295 (395)
136 PRK15179 Vi polysaccharide bio 98.2 0.00046 9.9E-09 70.8 22.3 142 92-237 84-229 (694)
137 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.3E-11 49.6 4.0 33 95-127 2-34 (34)
138 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 49.1 4.4 33 197-229 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 98.1 6.1E-06 1.3E-10 48.2 4.4 33 196-228 2-34 (34)
140 TIGR02552 LcrH_SycD type III s 98.1 5.6E-05 1.2E-09 61.1 11.5 94 369-465 19-114 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.9E-05 1.3E-09 71.3 12.8 117 100-221 175-294 (395)
142 KOG2053 Mitochondrial inherita 98.0 0.014 3E-07 59.3 27.9 60 441-506 441-500 (932)
143 PRK15363 pathogenicity island 98.0 0.00011 2.3E-09 59.1 10.6 96 368-466 36-133 (157)
144 KOG3060 Uncharacterized conser 97.9 0.0054 1.2E-07 52.9 20.3 115 208-324 99-219 (289)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00045 9.8E-09 56.4 13.8 88 302-392 54-143 (145)
146 PF09976 TPR_21: Tetratricopep 97.9 0.0012 2.5E-08 54.0 16.0 122 198-321 15-143 (145)
147 TIGR02552 LcrH_SycD type III s 97.9 0.00045 9.6E-09 55.7 13.5 98 334-436 20-119 (135)
148 PF10037 MRP-S27: Mitochondria 97.8 0.0002 4.4E-09 68.1 11.8 123 53-177 59-186 (429)
149 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 44.6 3.3 31 95-125 1-31 (31)
150 COG4235 Cytochrome c biogenesi 97.8 0.00092 2E-08 59.4 14.2 108 364-471 153-262 (287)
151 PF04840 Vps16_C: Vps16, C-ter 97.8 0.032 6.8E-07 51.8 27.3 110 268-394 180-289 (319)
152 cd00189 TPR Tetratricopeptide 97.8 0.00029 6.2E-09 52.3 9.9 93 370-465 3-97 (100)
153 PF08579 RPM2: Mitochondrial r 97.8 0.00056 1.2E-08 51.0 10.6 81 298-379 27-116 (120)
154 PF01535 PPR: PPR repeat; Int 97.8 3.7E-05 8E-10 43.7 3.5 29 197-225 2-30 (31)
155 PF08579 RPM2: Mitochondrial r 97.7 0.0007 1.5E-08 50.5 10.1 80 198-277 28-116 (120)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00067 1.5E-08 53.1 10.8 92 371-465 6-105 (119)
157 PF04840 Vps16_C: Vps16, C-ter 97.7 0.048 1.1E-06 50.6 25.6 112 332-463 178-289 (319)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.6E-08 51.7 11.7 95 299-393 5-102 (119)
159 PF10037 MRP-S27: Mitochondria 97.6 0.00072 1.6E-08 64.4 11.5 116 163-278 65-186 (429)
160 PF12895 Apc3: Anaphase-promot 97.6 0.00033 7.1E-09 51.0 7.1 80 309-392 2-83 (84)
161 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.073 1.6E-06 50.0 29.1 372 45-435 29-535 (660)
162 PF12895 Apc3: Anaphase-promot 97.6 6.1E-05 1.3E-09 54.9 3.0 53 405-461 31-83 (84)
163 PF05843 Suf: Suppressor of fo 97.6 0.0037 8.1E-08 57.3 15.3 133 297-435 2-140 (280)
164 KOG0550 Molecular chaperone (D 97.5 0.0035 7.7E-08 57.8 14.3 161 297-466 169-351 (486)
165 PF14938 SNAP: Soluble NSF att 97.5 0.013 2.9E-07 53.8 18.6 89 270-358 119-223 (282)
166 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.5E-08 57.5 14.5 139 196-338 2-147 (280)
167 PLN03088 SGT1, suppressor of 97.5 0.00057 1.2E-08 64.9 9.5 105 338-448 9-116 (356)
168 PRK10153 DNA-binding transcrip 97.4 0.0061 1.3E-07 60.7 16.2 138 294-436 335-487 (517)
169 KOG0553 TPR repeat-containing 97.4 0.00048 1E-08 60.8 7.3 108 340-453 90-200 (304)
170 KOG2280 Vacuolar assembly/sort 97.4 0.17 3.7E-06 50.8 26.4 327 99-462 442-796 (829)
171 PF13414 TPR_11: TPR repeat; P 97.4 0.00042 9.2E-09 48.2 5.7 64 398-464 2-66 (69)
172 PRK02603 photosystem I assembl 97.4 0.0022 4.9E-08 54.1 11.0 95 369-466 37-150 (172)
173 cd00189 TPR Tetratricopeptide 97.4 0.0023 5E-08 47.2 9.9 92 299-393 3-94 (100)
174 PF06239 ECSIT: Evolutionarily 97.4 0.002 4.4E-08 54.4 9.9 90 191-280 43-153 (228)
175 PF13432 TPR_16: Tetratricopep 97.4 0.0005 1.1E-08 47.1 5.4 59 405-466 3-61 (65)
176 PLN03088 SGT1, suppressor of 97.4 0.0038 8.3E-08 59.4 13.2 103 302-408 8-112 (356)
177 PF14938 SNAP: Soluble NSF att 97.4 0.0066 1.4E-07 55.9 14.3 21 100-120 41-61 (282)
178 CHL00033 ycf3 photosystem I as 97.3 0.0025 5.5E-08 53.5 10.6 94 366-462 34-139 (168)
179 PRK02603 photosystem I assembl 97.3 0.0081 1.8E-07 50.7 13.6 87 196-283 36-124 (172)
180 KOG1538 Uncharacterized conser 97.3 0.034 7.3E-07 54.5 18.7 203 132-399 601-806 (1081)
181 COG4700 Uncharacterized protei 97.3 0.045 9.6E-07 45.1 16.6 98 227-324 86-188 (251)
182 PRK10153 DNA-binding transcrip 97.3 0.0091 2E-07 59.5 15.7 135 326-467 332-484 (517)
183 KOG2796 Uncharacterized conser 97.3 0.097 2.1E-06 45.6 21.2 130 196-325 178-315 (366)
184 KOG2041 WD40 repeat protein [G 97.3 0.18 3.9E-06 50.1 23.4 338 57-432 689-1087(1189)
185 PRK10866 outer membrane biogen 97.3 0.13 2.7E-06 46.0 21.8 61 200-261 37-100 (243)
186 PF06239 ECSIT: Evolutionarily 97.2 0.0044 9.5E-08 52.5 10.5 96 285-381 34-152 (228)
187 PF09205 DUF1955: Domain of un 97.2 0.058 1.3E-06 41.6 15.2 141 306-468 12-152 (161)
188 PRK15331 chaperone protein Sic 97.2 0.0065 1.4E-07 49.2 10.8 89 373-464 43-133 (165)
189 KOG2280 Vacuolar assembly/sort 97.2 0.3 6.5E-06 49.1 25.3 337 122-501 425-792 (829)
190 PF12688 TPR_5: Tetratrico pep 97.2 0.019 4.1E-07 44.5 13.1 106 201-306 7-116 (120)
191 COG4700 Uncharacterized protei 97.2 0.04 8.6E-07 45.3 15.1 130 327-464 85-221 (251)
192 PRK15363 pathogenicity island 97.2 0.023 5.1E-07 45.9 13.7 98 267-365 37-137 (157)
193 KOG0550 Molecular chaperone (D 97.1 0.048 1E-06 50.6 16.6 152 239-394 178-348 (486)
194 PRK10866 outer membrane biogen 97.1 0.079 1.7E-06 47.3 17.9 54 171-224 39-98 (243)
195 KOG0553 TPR repeat-containing 97.1 0.0052 1.1E-07 54.4 10.0 100 304-408 89-191 (304)
196 PF13371 TPR_9: Tetratricopept 97.1 0.0023 4.9E-08 45.0 6.4 58 407-467 3-60 (73)
197 PF12688 TPR_5: Tetratrico pep 97.0 0.028 6.1E-07 43.6 12.5 105 302-410 7-117 (120)
198 PF14559 TPR_19: Tetratricopep 97.0 0.0031 6.7E-08 43.6 6.7 60 343-405 3-64 (68)
199 CHL00033 ycf3 photosystem I as 97.0 0.0088 1.9E-07 50.2 10.7 63 96-158 37-101 (168)
200 PF14559 TPR_19: Tetratricopep 97.0 0.0009 1.9E-08 46.3 3.9 53 411-466 3-55 (68)
201 KOG1130 Predicted G-alpha GTPa 97.0 0.0055 1.2E-07 56.5 9.5 128 232-359 197-343 (639)
202 COG3898 Uncharacterized membra 97.0 0.3 6.5E-06 45.3 27.5 242 207-464 132-391 (531)
203 KOG1130 Predicted G-alpha GTPa 97.0 0.0078 1.7E-07 55.5 10.1 129 332-463 196-342 (639)
204 KOG2796 Uncharacterized conser 96.9 0.023 5E-07 49.3 11.6 128 97-224 180-315 (366)
205 PF13432 TPR_16: Tetratricopep 96.9 0.0026 5.6E-08 43.5 5.0 52 340-393 6-57 (65)
206 PF13431 TPR_17: Tetratricopep 96.8 0.0011 2.4E-08 38.3 2.6 33 425-457 2-34 (34)
207 PF13525 YfiO: Outer membrane 96.8 0.29 6.3E-06 42.5 20.1 177 202-387 12-198 (203)
208 PRK10803 tol-pal system protei 96.8 0.012 2.5E-07 53.1 10.1 84 378-464 154-245 (263)
209 PF13414 TPR_11: TPR repeat; P 96.7 0.0047 1E-07 42.8 5.6 59 331-392 3-63 (69)
210 PF12921 ATP13: Mitochondrial 96.7 0.029 6.4E-07 44.0 10.5 52 326-377 47-98 (126)
211 PF13525 YfiO: Outer membrane 96.7 0.11 2.5E-06 45.0 15.2 164 273-456 13-198 (203)
212 PF13281 DUF4071: Domain of un 96.6 0.31 6.6E-06 45.9 17.7 74 269-342 145-228 (374)
213 PRK10803 tol-pal system protei 96.6 0.046 9.9E-07 49.3 12.0 85 307-393 154-243 (263)
214 COG3898 Uncharacterized membra 96.5 0.67 1.4E-05 43.1 26.7 284 96-394 84-390 (531)
215 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.75 1.6E-05 43.6 28.7 374 83-464 30-530 (660)
216 PRK11619 lytic murein transgly 96.5 1.3 2.9E-05 45.6 29.8 55 371-428 316-372 (644)
217 PF03704 BTAD: Bacterial trans 96.4 0.11 2.4E-06 42.3 12.7 72 298-370 64-139 (146)
218 PF07079 DUF1347: Protein of u 96.3 0.99 2.1E-05 42.9 34.3 411 39-463 20-522 (549)
219 COG4235 Cytochrome c biogenesi 96.2 0.011 2.4E-07 52.6 5.9 103 396-510 153-258 (287)
220 PF13371 TPR_9: Tetratricopept 96.0 0.024 5.1E-07 39.7 6.1 59 376-437 4-64 (73)
221 PF13424 TPR_12: Tetratricopep 96.0 0.023 5E-07 40.4 5.8 26 333-358 48-73 (78)
222 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.044 9.6E-07 52.2 8.6 62 367-431 75-141 (453)
223 PF12921 ATP13: Mitochondrial 95.9 0.13 2.8E-06 40.4 9.9 96 128-241 1-99 (126)
224 KOG1538 Uncharacterized conser 95.8 0.5 1.1E-05 46.7 15.3 207 97-324 601-845 (1081)
225 KOG3941 Intermediate in Toll s 95.7 0.11 2.4E-06 45.7 9.7 109 184-292 54-186 (406)
226 KOG0543 FKBP-type peptidyl-pro 95.7 0.15 3.2E-06 47.6 10.9 137 303-464 215-354 (397)
227 KOG1941 Acetylcholine receptor 95.6 0.27 5.8E-06 45.1 11.8 162 298-462 85-272 (518)
228 PF03704 BTAD: Bacterial trans 95.5 0.065 1.4E-06 43.7 7.6 68 401-471 64-136 (146)
229 KOG2610 Uncharacterized conser 95.5 0.093 2E-06 47.4 8.6 159 308-472 115-283 (491)
230 PF13281 DUF4071: Domain of un 95.5 1.6 3.5E-05 41.2 17.1 72 169-240 146-227 (374)
231 PF04053 Coatomer_WDAD: Coatom 95.4 0.77 1.7E-05 44.9 15.4 159 204-394 270-429 (443)
232 PF04053 Coatomer_WDAD: Coatom 95.4 0.57 1.2E-05 45.8 14.5 159 102-292 269-429 (443)
233 KOG2114 Vacuolar assembly/sort 95.3 4.1 8.8E-05 42.1 21.2 49 405-459 711-759 (933)
234 PF13428 TPR_14: Tetratricopep 95.3 0.033 7.2E-07 34.4 4.0 40 401-443 3-42 (44)
235 KOG2041 WD40 repeat protein [G 95.3 3.8 8.2E-05 41.4 26.4 125 75-218 747-875 (1189)
236 COG3118 Thioredoxin domain-con 95.3 1.8 3.9E-05 39.0 15.7 122 340-467 143-267 (304)
237 PF13424 TPR_12: Tetratricopep 95.2 0.033 7.1E-07 39.6 4.3 61 401-464 7-74 (78)
238 PF09205 DUF1955: Domain of un 95.2 1.1 2.3E-05 34.9 12.7 64 298-363 88-151 (161)
239 COG1729 Uncharacterized protei 95.2 0.15 3.3E-06 45.0 9.1 91 369-465 144-244 (262)
240 COG4105 ComL DNA uptake lipopr 95.2 1.9 4.2E-05 38.0 15.6 180 58-259 33-233 (254)
241 PF10300 DUF3808: Protein of u 95.1 3.9 8.5E-05 40.6 22.1 146 98-246 192-356 (468)
242 KOG1258 mRNA processing protei 95.1 3.9 8.4E-05 40.6 26.0 87 105-192 90-179 (577)
243 COG4105 ComL DNA uptake lipopr 95.1 2.2 4.8E-05 37.6 19.8 71 205-275 44-116 (254)
244 PF13512 TPR_18: Tetratricopep 95.1 0.68 1.5E-05 36.9 11.4 58 377-437 20-82 (142)
245 PF10300 DUF3808: Protein of u 95.0 1.6 3.6E-05 43.3 16.8 159 299-463 191-374 (468)
246 COG1729 Uncharacterized protei 95.0 0.29 6.3E-06 43.3 10.1 95 299-394 145-242 (262)
247 PF07079 DUF1347: Protein of u 95.0 3.6 7.8E-05 39.4 30.1 67 74-140 91-178 (549)
248 PRK11906 transcriptional regul 94.7 0.72 1.6E-05 44.3 12.6 142 311-459 273-430 (458)
249 KOG3941 Intermediate in Toll s 94.5 0.43 9.3E-06 42.3 9.8 97 285-382 54-173 (406)
250 COG4785 NlpI Lipoprotein NlpI, 94.5 2.7 5.8E-05 36.0 14.1 180 277-467 77-268 (297)
251 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.48 1E-05 45.4 10.7 62 330-394 74-139 (453)
252 KOG0543 FKBP-type peptidyl-pro 94.4 0.68 1.5E-05 43.4 11.4 117 273-393 216-352 (397)
253 smart00299 CLH Clathrin heavy 94.3 2.3 4.9E-05 34.2 14.6 42 235-277 12-53 (140)
254 KOG4555 TPR repeat-containing 94.3 0.54 1.2E-05 36.4 8.7 89 376-467 52-146 (175)
255 PF07035 Mic1: Colon cancer-as 94.3 1.5 3.3E-05 36.2 12.0 136 114-259 14-149 (167)
256 smart00299 CLH Clathrin heavy 94.2 2.4 5.1E-05 34.1 15.6 86 97-190 10-95 (140)
257 KOG1941 Acetylcholine receptor 94.0 5.1 0.00011 37.2 17.7 162 197-358 85-273 (518)
258 PRK15331 chaperone protein Sic 94.0 0.24 5.2E-06 40.4 6.8 91 405-507 43-133 (165)
259 PF13512 TPR_18: Tetratricopep 93.8 1.6 3.4E-05 34.8 10.9 51 275-325 20-76 (142)
260 KOG0890 Protein kinase of the 93.5 19 0.00041 42.2 22.5 315 135-468 1389-1734(2382)
261 KOG2610 Uncharacterized conser 93.5 2.4 5.3E-05 38.7 12.6 155 275-436 113-283 (491)
262 PF13170 DUF4003: Protein of u 93.4 2.5 5.4E-05 39.0 13.3 62 313-375 160-225 (297)
263 PF04184 ST7: ST7 protein; In 93.4 8.3 0.00018 37.6 18.1 145 201-359 174-323 (539)
264 KOG1920 IkappaB kinase complex 93.4 14 0.0003 40.1 22.3 108 276-394 919-1026(1265)
265 PF09613 HrpB1_HrpK: Bacterial 93.4 3.4 7.4E-05 33.7 12.2 108 340-457 19-130 (160)
266 COG0457 NrfG FOG: TPR repeat [ 93.2 5.3 0.00011 34.7 26.5 199 231-434 60-268 (291)
267 PF02259 FAT: FAT domain; Int 93.2 8 0.00017 36.8 19.4 66 294-359 144-212 (352)
268 PF08631 SPO22: Meiosis protei 92.9 7.4 0.00016 35.7 24.7 159 232-392 86-271 (278)
269 COG0457 NrfG FOG: TPR repeat [ 92.9 5.9 0.00013 34.4 27.6 216 244-466 37-266 (291)
270 PRK11906 transcriptional regul 92.8 7.1 0.00015 37.8 15.5 139 280-426 273-431 (458)
271 PF10602 RPN7: 26S proteasome 92.8 3.6 7.9E-05 34.6 12.4 95 298-394 38-140 (177)
272 PF13176 TPR_7: Tetratricopept 92.7 0.21 4.6E-06 29.1 3.5 26 438-463 1-26 (36)
273 KOG1585 Protein required for f 92.7 6.5 0.00014 34.4 16.2 82 233-322 34-117 (308)
274 PF04097 Nic96: Nup93/Nic96; 92.6 14 0.00031 38.2 19.7 45 60-107 112-158 (613)
275 PF13170 DUF4003: Protein of u 92.6 3.7 8.1E-05 37.8 13.1 62 111-172 79-149 (297)
276 KOG4570 Uncharacterized conser 92.3 0.72 1.6E-05 41.6 7.7 104 53-159 57-165 (418)
277 COG4649 Uncharacterized protei 92.0 2.7 5.8E-05 34.6 9.9 116 278-394 71-194 (221)
278 PF08631 SPO22: Meiosis protei 92.0 9.8 0.00021 34.9 22.9 59 166-224 86-150 (278)
279 PF13428 TPR_14: Tetratricopep 91.9 0.34 7.5E-06 29.7 4.0 31 437-467 2-32 (44)
280 PRK09687 putative lyase; Provi 91.9 10 0.00022 34.8 26.7 80 264-346 141-221 (280)
281 KOG1585 Protein required for f 91.9 8.3 0.00018 33.8 16.1 57 334-391 193-251 (308)
282 KOG1258 mRNA processing protei 91.7 15 0.00033 36.6 31.2 366 63-451 82-490 (577)
283 COG3629 DnrI DNA-binding trans 91.6 0.98 2.1E-05 40.7 7.9 59 369-430 155-215 (280)
284 PF04184 ST7: ST7 protein; In 91.2 15 0.00032 36.0 15.5 149 100-258 174-323 (539)
285 TIGR02508 type_III_yscG type I 91.2 4.6 0.0001 29.7 9.3 88 144-235 20-107 (115)
286 KOG4555 TPR repeat-containing 91.1 2 4.3E-05 33.4 7.9 87 341-432 53-145 (175)
287 PF02259 FAT: FAT domain; Int 90.9 15 0.00032 34.9 18.6 66 397-465 144-213 (352)
288 PF00637 Clathrin: Region in C 90.9 0.37 8.1E-06 39.0 4.4 85 99-190 12-96 (143)
289 KOG1586 Protein required for f 90.5 11 0.00024 32.8 13.1 37 418-454 170-206 (288)
290 PF10602 RPN7: 26S proteasome 90.5 3.9 8.4E-05 34.5 10.2 94 266-359 37-141 (177)
291 COG3118 Thioredoxin domain-con 90.4 14 0.00029 33.6 18.3 118 239-360 143-265 (304)
292 COG3629 DnrI DNA-binding trans 90.4 3.7 8.1E-05 37.1 10.4 75 299-374 156-234 (280)
293 PF13176 TPR_7: Tetratricopept 89.9 0.86 1.9E-05 26.5 4.2 24 299-322 2-25 (36)
294 PF02284 COX5A: Cytochrome c o 89.6 3.9 8.4E-05 30.3 8.0 61 314-376 28-88 (108)
295 KOG4234 TPR repeat-containing 89.6 1.1 2.4E-05 37.6 5.9 98 341-441 105-207 (271)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 3 6.6E-05 30.5 7.3 63 311-375 22-84 (103)
297 PF07719 TPR_2: Tetratricopept 88.9 1.3 2.8E-05 25.0 4.5 27 438-464 3-29 (34)
298 PRK09687 putative lyase; Provi 88.9 19 0.0004 33.1 23.9 138 193-342 140-278 (280)
299 PF00637 Clathrin: Region in C 88.8 0.27 5.8E-06 39.8 2.0 85 134-221 12-96 (143)
300 PF00515 TPR_1: Tetratricopept 88.6 0.98 2.1E-05 25.6 3.8 25 439-463 4-28 (34)
301 PRK11619 lytic murein transgly 88.6 34 0.00074 35.7 34.3 222 244-469 255-509 (644)
302 KOG4570 Uncharacterized conser 88.5 6.9 0.00015 35.6 10.3 102 158-260 58-165 (418)
303 TIGR02561 HrpB1_HrpK type III 88.2 3.7 8E-05 32.9 7.7 49 418-466 26-74 (153)
304 PF09613 HrpB1_HrpK: Bacterial 88.2 2.5 5.5E-05 34.4 7.0 70 378-450 21-92 (160)
305 COG4649 Uncharacterized protei 88.0 14 0.00031 30.6 12.9 134 94-228 59-200 (221)
306 PF07721 TPR_4: Tetratricopept 87.8 0.82 1.8E-05 24.2 2.8 23 438-460 3-25 (26)
307 COG1747 Uncharacterized N-term 87.8 29 0.00064 34.1 19.6 50 345-394 183-232 (711)
308 PF07035 Mic1: Colon cancer-as 87.5 15 0.00033 30.4 16.5 136 316-467 14-151 (167)
309 KOG2114 Vacuolar assembly/sort 87.5 40 0.00088 35.3 18.7 118 167-292 337-458 (933)
310 KOG2066 Vacuolar assembly/sort 87.3 39 0.00086 35.0 23.8 69 74-146 368-440 (846)
311 PF04097 Nic96: Nup93/Nic96; 87.3 40 0.00086 35.0 20.7 61 97-158 114-181 (613)
312 KOG0276 Vesicle coat complex C 87.0 13 0.00028 37.2 12.0 100 277-394 649-748 (794)
313 PF07719 TPR_2: Tetratricopept 86.8 1.1 2.4E-05 25.3 3.2 27 400-429 2-28 (34)
314 PF13431 TPR_17: Tetratricopep 86.6 0.84 1.8E-05 26.2 2.6 22 163-184 12-33 (34)
315 KOG4648 Uncharacterized conser 86.2 1.4 3.1E-05 40.2 5.0 113 338-460 104-219 (536)
316 PF13929 mRNA_stabil: mRNA sta 86.1 26 0.00057 31.8 13.0 109 110-218 144-261 (292)
317 PF13174 TPR_6: Tetratricopept 86.0 1 2.2E-05 25.2 2.8 29 438-466 2-30 (33)
318 KOG2066 Vacuolar assembly/sort 85.9 47 0.001 34.5 22.0 153 136-296 363-536 (846)
319 PF00515 TPR_1: Tetratricopept 85.7 2.3 5E-05 24.0 4.2 27 298-324 3-29 (34)
320 TIGR02561 HrpB1_HrpK type III 85.5 18 0.00038 29.2 12.4 96 342-463 21-120 (153)
321 PF09477 Type_III_YscG: Bacter 84.7 11 0.00025 28.2 8.1 88 142-233 19-106 (116)
322 PF13762 MNE1: Mitochondrial s 84.4 9.8 0.00021 30.6 8.4 95 47-143 24-129 (145)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 8.7 0.00019 28.2 7.1 47 213-259 25-71 (103)
324 PF13374 TPR_10: Tetratricopep 83.6 2.4 5.1E-05 25.2 3.9 28 437-464 3-30 (42)
325 PF14853 Fis1_TPR_C: Fis1 C-te 83.5 8.1 0.00018 24.9 6.3 50 439-514 4-53 (53)
326 PF13181 TPR_8: Tetratricopept 83.5 2.8 6.2E-05 23.6 4.0 28 437-464 2-29 (34)
327 PRK15180 Vi polysaccharide bio 82.9 49 0.0011 32.3 29.2 145 9-159 274-421 (831)
328 PF04910 Tcf25: Transcriptiona 82.9 23 0.00049 33.9 11.8 64 398-464 99-167 (360)
329 KOG2063 Vacuolar assembly/sort 82.4 36 0.00078 36.4 13.8 63 197-259 506-573 (877)
330 PF13181 TPR_8: Tetratricopept 82.4 2.8 6E-05 23.6 3.6 31 401-434 3-33 (34)
331 KOG3364 Membrane protein invol 81.8 18 0.0004 28.5 8.6 70 364-436 29-105 (149)
332 PRK12798 chemotaxis protein; R 81.5 52 0.0011 31.6 21.3 150 278-432 125-287 (421)
333 PRK15180 Vi polysaccharide bio 81.4 24 0.00052 34.3 11.0 120 344-468 302-423 (831)
334 PF11207 DUF2989: Protein of u 81.3 14 0.0003 31.6 8.5 68 146-214 123-197 (203)
335 KOG1920 IkappaB kinase complex 81.2 92 0.002 34.3 21.2 25 439-463 1187-1211(1265)
336 KOG1464 COP9 signalosome, subu 81.0 41 0.00089 30.1 16.2 49 142-190 40-91 (440)
337 PF02284 COX5A: Cytochrome c o 80.4 12 0.00027 27.8 6.9 59 213-272 28-86 (108)
338 PF13374 TPR_10: Tetratricopep 80.2 5.1 0.00011 23.7 4.5 27 298-324 4-30 (42)
339 KOG1586 Protein required for f 79.8 42 0.00091 29.5 16.7 91 345-438 128-231 (288)
340 PF11207 DUF2989: Protein of u 79.3 30 0.00065 29.6 9.9 72 212-284 123-197 (203)
341 TIGR02508 type_III_yscG type I 79.2 23 0.00051 26.2 9.6 86 246-335 21-106 (115)
342 COG2976 Uncharacterized protei 79.2 39 0.00084 28.7 14.2 89 339-434 97-191 (207)
343 TIGR03504 FimV_Cterm FimV C-te 79.0 3.9 8.5E-05 25.1 3.5 27 440-466 3-29 (44)
344 PF07163 Pex26: Pex26 protein; 78.8 27 0.00059 31.5 9.8 86 303-391 90-182 (309)
345 KOG4234 TPR repeat-containing 77.8 35 0.00075 29.2 9.6 90 304-397 103-199 (271)
346 KOG4648 Uncharacterized conser 77.7 7.2 0.00016 35.9 6.1 84 304-398 105-197 (536)
347 COG3947 Response regulator con 77.6 56 0.0012 29.7 14.3 59 402-463 282-340 (361)
348 KOG0276 Vesicle coat complex C 77.6 17 0.00038 36.3 9.0 24 132-155 669-692 (794)
349 COG4785 NlpI Lipoprotein NlpI, 77.2 48 0.001 28.7 15.4 156 95-260 100-267 (297)
350 PRK13342 recombination factor 76.8 67 0.0015 31.5 13.3 114 111-242 154-277 (413)
351 KOG4077 Cytochrome c oxidase, 76.6 22 0.00048 27.6 7.5 60 314-375 67-126 (149)
352 COG4455 ImpE Protein of avirul 74.4 19 0.00041 31.1 7.4 78 298-376 3-81 (273)
353 KOG2063 Vacuolar assembly/sort 74.0 1.3E+02 0.0029 32.3 21.9 125 96-241 506-637 (877)
354 PHA02875 ankyrin repeat protei 73.8 93 0.002 30.4 15.2 197 46-264 16-229 (413)
355 PF14561 TPR_20: Tetratricopep 73.2 13 0.00027 27.2 5.5 47 421-467 7-53 (90)
356 PF13174 TPR_6: Tetratricopept 73.1 8.3 0.00018 21.2 3.8 23 338-360 7-29 (33)
357 KOG4642 Chaperone-dependent E3 72.9 12 0.00027 32.7 6.0 84 341-430 20-106 (284)
358 KOG1308 Hsp70-interacting prot 72.8 2.7 5.9E-05 38.6 2.3 89 379-470 126-216 (377)
359 PF06552 TOM20_plant: Plant sp 72.2 2.4 5.2E-05 35.2 1.7 66 395-467 64-138 (186)
360 COG2909 MalT ATP-dependent tra 72.2 1.4E+02 0.0031 31.8 26.1 214 140-356 426-684 (894)
361 TIGR03504 FimV_Cterm FimV C-te 71.9 9.4 0.0002 23.4 3.8 21 237-257 6-26 (44)
362 KOG1464 COP9 signalosome, subu 71.6 76 0.0017 28.5 16.4 249 159-412 21-317 (440)
363 PF13934 ELYS: Nuclear pore co 71.0 28 0.00061 30.7 8.3 119 60-186 76-198 (226)
364 PF04190 DUF410: Protein of un 70.9 82 0.0018 28.5 21.6 159 176-360 2-170 (260)
365 PF10579 Rapsyn_N: Rapsyn N-te 70.1 16 0.00035 25.7 5.0 45 308-352 18-64 (80)
366 PF07163 Pex26: Pex26 protein; 70.0 62 0.0013 29.3 9.8 87 202-288 90-181 (309)
367 COG1747 Uncharacterized N-term 70.0 1.2E+02 0.0026 30.1 22.1 168 269-446 70-249 (711)
368 PHA02875 ankyrin repeat protei 70.0 1.1E+02 0.0025 29.8 16.0 52 275-330 175-229 (413)
369 KOG1550 Extracellular protein 69.6 1.4E+02 0.003 30.7 21.9 150 105-260 260-427 (552)
370 PF10345 Cohesin_load: Cohesin 68.8 1.5E+02 0.0033 30.8 33.1 50 342-391 372-428 (608)
371 smart00028 TPR Tetratricopepti 68.6 10 0.00023 19.9 3.6 28 437-464 2-29 (34)
372 KOG2396 HAT (Half-A-TPR) repea 68.5 1.3E+02 0.0028 29.8 20.8 274 111-393 268-556 (568)
373 PF11663 Toxin_YhaV: Toxin wit 67.6 8.4 0.00018 30.2 3.6 33 105-139 106-138 (140)
374 PF14853 Fis1_TPR_C: Fis1 C-te 67.1 9.6 0.00021 24.5 3.3 31 404-437 6-36 (53)
375 PF11846 DUF3366: Domain of un 66.7 28 0.0006 29.8 7.3 31 364-394 141-171 (193)
376 KOG2297 Predicted translation 66.3 1.1E+02 0.0023 28.2 13.6 20 296-315 321-340 (412)
377 cd08819 CARD_MDA5_2 Caspase ac 66.0 39 0.00084 24.4 6.4 38 176-214 48-85 (88)
378 PF06552 TOM20_plant: Plant sp 65.6 78 0.0017 26.6 9.0 109 312-430 7-135 (186)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 65.4 39 0.00084 26.6 7.2 71 385-461 51-124 (126)
380 PF10579 Rapsyn_N: Rapsyn N-te 65.3 27 0.00059 24.6 5.4 48 343-390 18-66 (80)
381 KOG4567 GTPase-activating prot 64.4 77 0.0017 29.1 9.4 42 115-156 264-305 (370)
382 COG2976 Uncharacterized protei 63.3 95 0.0021 26.5 15.2 89 238-326 97-189 (207)
383 PF04190 DUF410: Protein of un 63.2 1.2E+02 0.0026 27.5 15.0 28 163-190 89-116 (260)
384 cd08819 CARD_MDA5_2 Caspase ac 61.7 58 0.0013 23.5 7.0 64 250-315 22-85 (88)
385 PF07575 Nucleopor_Nup85: Nup8 61.1 18 0.00038 37.2 5.8 26 209-234 509-534 (566)
386 PRK13800 putative oxidoreducta 60.8 2.6E+02 0.0057 30.8 26.7 256 184-464 624-880 (897)
387 KOG1550 Extracellular protein 60.7 2E+02 0.0044 29.5 24.4 114 145-260 228-358 (552)
388 PRK10941 hypothetical protein; 60.7 52 0.0011 29.9 8.0 65 371-438 185-251 (269)
389 PF13762 MNE1: Mitochondrial s 60.1 91 0.002 25.2 10.8 51 194-244 78-129 (145)
390 smart00777 Mad3_BUB1_I Mad3/BU 59.7 84 0.0018 24.7 8.0 71 384-460 50-123 (125)
391 COG3947 Response regulator con 59.6 1.4E+02 0.0031 27.3 14.3 69 267-335 281-357 (361)
392 PF10366 Vps39_1: Vacuolar sor 59.1 46 0.001 25.3 6.3 77 269-346 3-94 (108)
393 PRK10941 hypothetical protein; 58.9 53 0.0011 29.9 7.7 63 402-467 184-246 (269)
394 KOG0686 COP9 signalosome, subu 57.8 1.8E+02 0.004 28.0 15.2 58 166-223 152-215 (466)
395 KOG4279 Serine/threonine prote 57.7 2.5E+02 0.0054 29.5 13.2 171 249-435 182-399 (1226)
396 PRK14956 DNA polymerase III su 57.4 1.4E+02 0.003 29.9 10.7 92 49-164 191-283 (484)
397 PF11838 ERAP1_C: ERAP1-like C 57.2 1.7E+02 0.0036 27.3 17.9 28 77-104 55-83 (324)
398 PF09477 Type_III_YscG: Bacter 57.1 83 0.0018 23.8 9.7 79 245-326 21-99 (116)
399 PF11848 DUF3368: Domain of un 56.8 46 0.001 20.8 5.2 33 307-339 13-45 (48)
400 COG5108 RPO41 Mitochondrial DN 56.5 52 0.0011 33.6 7.6 24 301-324 33-56 (1117)
401 KOG4077 Cytochrome c oxidase, 56.0 76 0.0017 24.8 6.8 45 215-259 69-113 (149)
402 PF14689 SPOB_a: Sensor_kinase 55.9 35 0.00075 22.8 4.6 22 372-393 28-49 (62)
403 PRK13800 putative oxidoreducta 54.2 3.4E+02 0.0074 30.0 28.6 158 188-359 721-880 (897)
404 cd08326 CARD_CASP9 Caspase act 54.1 66 0.0014 23.1 6.1 62 149-214 19-80 (84)
405 PF14689 SPOB_a: Sensor_kinase 53.3 36 0.00078 22.7 4.4 27 231-257 24-50 (62)
406 PF07575 Nucleopor_Nup85: Nup8 53.1 1.8E+02 0.0039 30.0 11.5 23 199-221 409-431 (566)
407 KOG4507 Uncharacterized conser 52.8 1.3E+02 0.0029 30.4 9.6 98 344-447 620-721 (886)
408 PRK10564 maltose regulon perip 51.4 32 0.0007 31.4 5.0 39 197-235 259-297 (303)
409 KOG0376 Serine-threonine phosp 51.0 11 0.00024 36.5 2.2 94 338-437 11-107 (476)
410 PF11848 DUF3368: Domain of un 50.6 60 0.0013 20.3 5.2 31 207-237 14-44 (48)
411 KOG0403 Neoplastic transformat 50.6 2.5E+02 0.0055 27.4 18.1 59 62-122 180-242 (645)
412 COG5108 RPO41 Mitochondrial DN 49.7 94 0.002 31.9 8.2 90 133-222 32-130 (1117)
413 COG0735 Fur Fe2+/Zn2+ uptake r 49.7 1.1E+02 0.0024 24.7 7.5 63 216-279 7-69 (145)
414 KOG0890 Protein kinase of the 49.6 5.7E+02 0.012 31.2 27.2 139 74-219 1395-1542(2382)
415 COG5159 RPN6 26S proteasome re 49.4 2.1E+02 0.0045 26.1 13.0 134 201-334 9-167 (421)
416 COG5159 RPN6 26S proteasome re 48.7 2.1E+02 0.0047 26.1 14.2 159 303-464 10-193 (421)
417 PF04762 IKI3: IKI3 family; I 48.2 4.2E+02 0.0092 29.3 13.7 30 265-294 812-843 (928)
418 cd00280 TRFH Telomeric Repeat 48.1 1.3E+02 0.0029 25.3 7.6 19 340-358 120-138 (200)
419 cd08326 CARD_CASP9 Caspase act 48.0 59 0.0013 23.4 5.0 62 45-113 19-80 (84)
420 PRK10564 maltose regulon perip 47.7 40 0.00087 30.8 5.1 40 297-336 258-297 (303)
421 COG0735 Fur Fe2+/Zn2+ uptake r 47.6 98 0.0021 25.0 6.9 64 115-179 7-70 (145)
422 cd00280 TRFH Telomeric Repeat 46.3 1.4E+02 0.0031 25.2 7.5 66 347-413 85-157 (200)
423 KOG0686 COP9 signalosome, subu 46.2 2.8E+02 0.0062 26.8 13.9 26 131-156 152-177 (466)
424 KOG4507 Uncharacterized conser 45.9 1.2E+02 0.0025 30.8 8.0 113 212-325 590-705 (886)
425 smart00638 LPD_N Lipoprotein N 45.8 3.6E+02 0.0078 27.8 22.1 63 58-125 308-371 (574)
426 COG4455 ImpE Protein of avirul 45.7 2.1E+02 0.0045 25.1 12.8 52 338-391 8-59 (273)
427 KOG4642 Chaperone-dependent E3 45.5 2.2E+02 0.0048 25.3 9.2 82 275-358 20-105 (284)
428 PF04910 Tcf25: Transcriptiona 45.0 2.9E+02 0.0063 26.5 18.4 142 106-258 22-167 (360)
429 PF09670 Cas_Cas02710: CRISPR- 44.0 3.1E+02 0.0067 26.5 12.7 55 204-259 140-198 (379)
430 KOG0687 26S proteasome regulat 43.9 2.8E+02 0.006 26.0 11.8 183 76-279 36-230 (393)
431 KOG1114 Tripeptidyl peptidase 43.8 4.7E+02 0.01 28.6 14.6 81 312-393 1212-1292(1304)
432 KOG4567 GTPase-activating prot 43.8 2.7E+02 0.0058 25.8 10.4 42 216-257 264-305 (370)
433 COG5187 RPN7 26S proteasome re 43.4 2.6E+02 0.0057 25.6 13.3 95 296-393 115-218 (412)
434 COG2909 MalT ATP-dependent tra 43.3 4.6E+02 0.0099 28.3 26.4 216 241-462 426-685 (894)
435 PF11817 Foie-gras_1: Foie gra 42.9 90 0.002 28.0 6.7 22 372-393 183-204 (247)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 42.7 1.6E+02 0.0036 23.0 9.4 42 314-355 81-123 (126)
437 PF13929 mRNA_stabil: mRNA sta 42.3 2.8E+02 0.006 25.5 17.7 113 281-393 144-264 (292)
438 PF11768 DUF3312: Protein of u 41.8 3.9E+02 0.0084 27.1 11.5 56 269-324 412-472 (545)
439 PF10345 Cohesin_load: Cohesin 41.0 4.4E+02 0.0096 27.5 35.6 398 61-464 60-605 (608)
440 TIGR02270 conserved hypothetic 40.9 3.6E+02 0.0078 26.4 25.1 234 100-357 44-278 (410)
441 KOG0292 Vesicle coat complex C 40.8 59 0.0013 34.4 5.5 18 490-507 764-781 (1202)
442 PF14669 Asp_Glu_race_2: Putat 40.7 2.3E+02 0.005 24.2 14.1 58 336-394 137-208 (233)
443 PF11846 DUF3366: Domain of un 40.7 1.1E+02 0.0023 26.1 6.6 36 395-433 140-175 (193)
444 TIGR02270 conserved hypothetic 39.7 3.8E+02 0.0081 26.3 25.8 235 136-394 45-279 (410)
445 PRK13342 recombination factor 39.4 3.8E+02 0.0082 26.3 18.7 99 227-343 173-277 (413)
446 PF14669 Asp_Glu_race_2: Putat 39.3 2.5E+02 0.0053 24.1 13.2 54 405-461 138-206 (233)
447 PF12862 Apc5: Anaphase-promot 39.2 1.1E+02 0.0024 22.4 5.6 53 409-464 8-69 (94)
448 TIGR01503 MthylAspMut_E methyl 39.2 2.4E+02 0.0053 27.7 9.0 106 246-358 70-196 (480)
449 PF07720 TPR_3: Tetratricopept 38.7 45 0.00097 19.4 2.7 23 438-460 3-25 (36)
450 PRK11639 zinc uptake transcrip 38.6 1.4E+02 0.0031 24.8 6.8 60 120-180 17-76 (169)
451 KOG0551 Hsp90 co-chaperone CNS 38.6 1.3E+02 0.0029 28.0 6.8 90 370-462 84-179 (390)
452 PF00244 14-3-3: 14-3-3 protei 38.4 2.9E+02 0.0062 24.6 10.8 60 200-259 6-66 (236)
453 KOG0545 Aryl-hydrocarbon recep 38.4 2E+02 0.0044 25.6 7.6 47 418-464 246-292 (329)
454 PF11838 ERAP1_C: ERAP1-like C 38.3 3.3E+02 0.0072 25.3 18.9 111 347-461 146-262 (324)
455 smart00386 HAT HAT (Half-A-TPR 38.0 65 0.0014 17.2 3.4 27 418-444 3-29 (33)
456 KOG3807 Predicted membrane pro 37.9 3.4E+02 0.0075 25.4 15.3 113 301-436 280-396 (556)
457 PF12796 Ank_2: Ankyrin repeat 37.3 1.1E+02 0.0024 21.6 5.5 13 74-86 6-18 (89)
458 cd08812 CARD_RIG-I_like Caspas 37.3 1.4E+02 0.003 21.7 5.7 48 63-113 37-85 (88)
459 PF09454 Vps23_core: Vps23 cor 37.0 1.1E+02 0.0024 20.7 4.7 47 294-341 6-52 (65)
460 cd08332 CARD_CASP2 Caspase act 36.9 1E+02 0.0022 22.5 4.9 59 44-109 22-80 (90)
461 KOG0991 Replication factor C, 36.3 3.1E+02 0.0067 24.4 13.8 87 269-359 134-220 (333)
462 PF02847 MA3: MA3 domain; Int 36.3 1.3E+02 0.0029 22.7 6.0 21 302-322 8-28 (113)
463 PF11817 Foie-gras_1: Foie gra 35.9 1.9E+02 0.0041 25.9 7.6 72 282-353 162-240 (247)
464 PF09454 Vps23_core: Vps23 cor 35.7 96 0.0021 21.0 4.3 48 193-241 6-53 (65)
465 PF06957 COPI_C: Coatomer (COP 35.7 2.1E+02 0.0045 28.0 8.1 123 306-463 214-347 (422)
466 PF07064 RIC1: RIC1; InterPro 35.5 3.4E+02 0.0073 24.6 16.5 89 167-260 156-250 (258)
467 KOG2034 Vacuolar sorting prote 35.3 6.1E+02 0.013 27.4 24.8 51 171-221 365-415 (911)
468 KOG2422 Uncharacterized conser 35.2 5.1E+02 0.011 26.5 15.6 91 202-292 349-446 (665)
469 KOG4521 Nuclear pore complex, 35.1 7E+02 0.015 28.1 15.8 128 231-358 984-1129(1480)
470 cd08332 CARD_CASP2 Caspase act 34.9 1.8E+02 0.0039 21.2 6.7 35 176-210 46-80 (90)
471 PF12926 MOZART2: Mitotic-spin 34.8 1.8E+02 0.0038 21.1 7.4 41 251-291 29-69 (88)
472 KOG0376 Serine-threonine phosp 34.8 82 0.0018 30.9 5.2 101 272-377 11-115 (476)
473 KOG2659 LisH motif-containing 34.7 3.2E+02 0.0069 24.1 9.3 54 338-392 71-128 (228)
474 TIGR01503 MthylAspMut_E methyl 34.5 3.2E+02 0.007 27.0 9.0 79 74-158 26-115 (480)
475 PF04034 DUF367: Domain of unk 34.4 2.3E+02 0.005 22.3 6.8 48 367-414 66-114 (127)
476 KOG1463 26S proteasome regulat 34.4 2.7E+02 0.006 26.2 8.1 22 441-462 133-154 (411)
477 cd07153 Fur_like Ferric uptake 34.3 94 0.002 23.7 4.8 46 100-145 6-51 (116)
478 PF09670 Cas_Cas02710: CRISPR- 34.2 4.4E+02 0.0095 25.5 12.7 52 274-325 140-198 (379)
479 KOG0508 Ankyrin repeat protein 33.4 1.3E+02 0.0029 29.4 6.2 20 487-506 345-364 (615)
480 COG4976 Predicted methyltransf 33.3 69 0.0015 28.1 4.0 59 374-435 2-62 (287)
481 PF12926 MOZART2: Mitotic-spin 33.0 1.9E+02 0.0041 20.9 6.0 46 42-89 25-70 (88)
482 PRK14700 recombination factor 32.8 4E+02 0.0088 24.7 15.9 123 125-260 63-196 (300)
483 PHA03100 ankyrin repeat protei 32.6 5.1E+02 0.011 25.8 12.9 230 114-355 48-304 (480)
484 PF14863 Alkyl_sulf_dimr: Alky 32.4 1.9E+02 0.0042 23.3 6.2 62 384-451 58-119 (141)
485 PF09986 DUF2225: Uncharacteri 32.4 2E+02 0.0042 25.2 6.9 31 437-467 166-196 (214)
486 PRK09462 fur ferric uptake reg 32.0 2.7E+02 0.0059 22.4 7.8 61 220-281 7-68 (148)
487 COG4259 Uncharacterized protei 31.9 1.6E+02 0.0035 21.9 5.1 31 433-463 69-99 (121)
488 KOG1524 WD40 repeat-containing 31.9 2.7E+02 0.0059 27.8 8.1 89 367-461 573-669 (737)
489 PF08424 NRDE-2: NRDE-2, neces 31.8 4.4E+02 0.0095 24.8 15.0 143 117-261 8-185 (321)
490 PHA02940 hypothetical protein; 30.7 3.8E+02 0.0083 23.7 9.4 31 61-94 97-127 (315)
491 PRK11639 zinc uptake transcrip 30.6 2.3E+02 0.0049 23.7 6.7 59 222-281 18-76 (169)
492 PRK09462 fur ferric uptake reg 30.5 2.5E+02 0.0055 22.7 6.9 61 119-180 7-68 (148)
493 KOG2222 Uncharacterized conser 30.2 5.4E+02 0.012 25.3 12.5 72 326-406 299-370 (848)
494 KOG0991 Replication factor C, 29.5 4.1E+02 0.0089 23.7 12.3 55 184-240 228-282 (333)
495 PF04762 IKI3: IKI3 family; I 29.3 8.3E+02 0.018 27.2 18.2 113 368-505 813-927 (928)
496 KOG2471 TPR repeat-containing 28.9 6E+02 0.013 25.4 15.5 289 121-410 9-380 (696)
497 cd07153 Fur_like Ferric uptake 28.5 1.6E+02 0.0034 22.4 5.2 43 202-244 7-49 (116)
498 PF02847 MA3: MA3 domain; Int 28.5 1.3E+02 0.0028 22.7 4.7 18 203-220 10-27 (113)
499 KOG1498 26S proteasome regulat 28.0 5.6E+02 0.012 24.8 16.0 23 196-218 53-75 (439)
500 PF01475 FUR: Ferric uptake re 27.6 90 0.0019 24.1 3.7 43 100-142 13-55 (120)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-74 Score=597.23 Aligned_cols=484 Identities=29% Similarity=0.485 Sum_probs=473.1
Q ss_pred cchhhhHHHHHHHhhc---ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHH
Q 046312 24 LLSKARQCLSFLKLCC---SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNL 100 (514)
Q Consensus 24 ~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 100 (514)
..|+..||.+++.+|. +.+.+.++|..|.+.|+.||..+++.++.+|+ +.|++++|.++|++|+ .||.++||.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~-~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMP-ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCC-CCCeeeHHHH
Confidence 3577889999999985 45667899999999999999999999999999 9999999999999999 8999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+.||..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchH
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+ ++.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~---~~~ 512 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN---LEL 512 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---cHH
Confidence 99999999999999999987799999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHH
Q 046312 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQ 500 (514)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 500 (514)
|..+.+.+.+++|++...|..|+++|++.|++++|.+++++|+++|+.+.|+++||++.+.++.++.+...|++.+++++
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 046312 501 ILETLNLHMKVLN 513 (514)
Q Consensus 501 ~~~~m~~~~~~~~ 513 (514)
.++++..+|++.+
T Consensus 593 ~l~~l~~~~~~~g 605 (697)
T PLN03081 593 KLDELMKEISEYG 605 (697)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998865
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.3e-72 Score=591.52 Aligned_cols=484 Identities=31% Similarity=0.568 Sum_probs=472.7
Q ss_pred cccchhhhHHHHHHHhhc---ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH
Q 046312 22 SDLLSKARQCLSFLKLCC---SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN 98 (514)
Q Consensus 22 ~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 98 (514)
.+..|+..||..++.+|. +.+.++++|..|.+.|+.||..+||.|+.+|+ +.|++++|.++|++|. .||+.+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~--k~g~~~~A~~vf~~m~-~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL--SLGSWGEAEKVFSRME-TKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH--hcCCHHHHHHHHhhCC-CCCeeeHH
Confidence 456899999999999985 56778999999999999999999999999999 9999999999999999 99999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
.|+.++..++++|+++|++.|++++|.++|+.+ ++|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+++ .
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~---~ 673 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH---V 673 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---h
Confidence 9999999999999999999966799999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHH
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGI 498 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 498 (514)
+.++.+.+++.+++|+++..|..|.+.|...|+|++|.++.+.|+++|+.+.||++||++.+.++.++.+...|++.+++
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 046312 499 YQILETLNLHMKVLN 513 (514)
Q Consensus 499 ~~~~~~m~~~~~~~~ 513 (514)
+..++++.++|++.+
T Consensus 754 ~~~l~~l~~~~~~~g 768 (857)
T PLN03077 754 NTVLEGFYEKMKASG 768 (857)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998765
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-66 Score=546.63 Aligned_cols=466 Identities=23% Similarity=0.351 Sum_probs=446.9
Q ss_pred cccchhhhHHHHHHHhhcC---hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH
Q 046312 22 SDLLSKARQCLSFLKLCCS---KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN 98 (514)
Q Consensus 22 ~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 98 (514)
.+..|+..||..++++|+. ...++++|..|.+.|+.||..++|.||.+|+ +.|++++|.++|++|+ .+|+++||
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~-~~d~~s~n 257 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV--KCGDVVSARLVFDRMP-RRDCISWN 257 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh--cCCCHHHHHHHHhcCC-CCCcchhH
Confidence 3577999999999999964 5667899999999999999999999999999 9999999999999999 99999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.+|++.|+++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+ .
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~---~ 570 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGK---G 570 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC---H
Confidence 9999999999999999999996 99999999999999999999999999999999 6999999999999999999 9
Q ss_pred hHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCCceeEEEECCeEEEEEecccCCcCh
Q 046312 419 GVGNEVRRRLLELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMK-NVGLKKMKGMSWVELGGSIHRFYSGYDSQVEL 495 (514)
Q Consensus 419 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (514)
++|.++++++.+.+ |+ ..+|..++.+|.+.|++++|.++|++|. +.|+.|....+ +.++.++.+.|+.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y--------~~lv~~l~r~G~~ 641 (857)
T PLN03077 571 SMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY--------ACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH--------HHHHHHHHhCCCH
Confidence 99999999998865 65 5689999999999999999999999999 78887765443 4688999999999
Q ss_pred HHHHHHHHHHH
Q 046312 496 AGIYQILETLN 506 (514)
Q Consensus 496 ~~a~~~~~~m~ 506 (514)
++|.+++++|.
T Consensus 642 ~eA~~~~~~m~ 652 (857)
T PLN03077 642 TEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHCC
Confidence 99999999983
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-62 Score=508.16 Aligned_cols=463 Identities=16% Similarity=0.203 Sum_probs=418.9
Q ss_pred hhHHHHHHHhh---cChhHHHHHHHHHHHhCC-CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHH
Q 046312 28 ARQCLSFLKLC---CSKKHLYQIHAQIQVSGL-QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRG 103 (514)
Q Consensus 28 ~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~ 103 (514)
...+..++..+ ++..++.++++.|.+.|+ .++..+++.++..|. +.|.+++|..+|+.|+ .||..+|+.+|.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--~~g~~~eAl~lf~~M~-~pd~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--KQRAVKEAFRFAKLIR-NPTLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--HCCCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 34455555555 789999999999999995 567888899999999 9999999999999999 7999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 183 (514)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 184 CKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKD--LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 184 ~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.++|++| ..||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999 568999999999999999999999999999987 5799999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046312 258 ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333 (514)
Q Consensus 258 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 333 (514)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---FQPNPIVLRALLSASS 410 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~ 410 (514)
|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++|. +.||..+|+.++.+|+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 999999999999999999999999999999995 8899999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCC-CCCchHHHHHHHHH----hcC-------------------CHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEP-RGSQNLVIVANKYA----EVG-------------------MWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~ 466 (514)
+.|+ ++.|.++++.+.+.+. .+..+|..++..|. +++ ..++|..+|++|.+.|
T Consensus 766 k~G~---le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 766 RKDD---ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 9999 9999999999998762 23557888776543 222 2367999999999999
Q ss_pred CCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 467 LKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
+.|+..+. +.++.++...+....+..++++|
T Consensus 843 i~Pd~~T~--------~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 843 TLPTMEVL--------SQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred CCCCHHHH--------HHHHHHhcccccHHHHHHHHHHh
Confidence 98775433 23334444444444444444443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-61 Score=497.66 Aligned_cols=439 Identities=18% Similarity=0.248 Sum_probs=403.9
Q ss_pred hhhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCcccHHH
Q 046312 26 SKARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVPIPWNN 99 (514)
Q Consensus 26 ~~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ 99 (514)
|+..||..++++| ++...+..+++.|.+.|+.||..+|+.||.+|+ +.|++++|.++|++|.. .||..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~--k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA--KSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7888999999998 467888999999999999999999999999999 99999999999999974 589999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hCCCCCcchHHHHHHHHHcC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTK--SGLDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~ 177 (514)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999986 57899999999999999999
Q ss_pred CCHHHHHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046312 178 RRKRDACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 178 ~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
|++++|.++|++| ..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME----EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999996 4999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----c-------------------CCHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----A-------------------GHLKEA 386 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A 386 (514)
|..||+.++.+|++.|+++.|.+++++|.+. |+.||..+|+.++..|.+ + +..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999996 999999999999876432 2 224679
Q ss_pred HHHHHhCC---CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 387 YTFIMNMP---FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE-PRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 387 ~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
..+|++|. +.||..||+.++.+++..+. ...+..+++.+.... +.+..+|..|++++.+. .++|..++++|
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~---~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHD---ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhccccc---HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 99999996 89999999999977777777 777766666554322 34456899999998432 46899999999
Q ss_pred HhCCCCCCCc
Q 046312 463 KNVGLKKMKG 472 (514)
Q Consensus 463 ~~~~~~~~~~ 472 (514)
...|+.|...
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999987765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-57 Score=465.57 Aligned_cols=451 Identities=12% Similarity=0.143 Sum_probs=412.8
Q ss_pred HHHHHHH---hhcChhHHHHHHHHHHHhC-CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCcccHHHHHH
Q 046312 30 QCLSFLK---LCCSKKHLYQIHAQIQVSG-LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVPIPWNNLIR 102 (514)
Q Consensus 30 ~~~~ll~---~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~ 102 (514)
++.+++. ..++..++..++..|...+ +.||..+|+.++.+|+ +.++++.|..++..|.. .||+.+||.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI--ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4444444 4577899999999998765 8899999999999999 99999999999998853 688999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999995 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 183 ACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 183 A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
+.+++..+ ..+|..+||+||.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99998777 56799999999999999999999999999995 57999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
.|+.||..+|++++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 99999999999999999999999999999999975 789999999999999999999999999996 4799999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQPNPIVLRALLSASS 410 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~ 410 (514)
+.+|.+|++.|+.++|.++|++|.+. |+.||..||+.++.+|++.|+.++|.++|+.|. +.|+..+|++++.++.
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 99999999999999999999999986 999999999999999999999999999999994 7899999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEeccc
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYD 490 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
+.|+ +++|.++++.+ ...|+ ..+|..|+.+|...|+++.|..+++++.+.+ |....++ ..++..|.
T Consensus 474 r~G~---~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y-------~~L~~~y~ 539 (697)
T PLN03081 474 REGL---LDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNY-------VVLLNLYN 539 (697)
T ss_pred hcCC---HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcch-------HHHHHHHH
Confidence 9999 88888877653 23344 5679999999999999999999999997543 4433344 46788899
Q ss_pred CCcChHHHHHHHHHHHHHh
Q 046312 491 SQVELAGIYQILETLNLHM 509 (514)
Q Consensus 491 ~~~~~~~a~~~~~~m~~~~ 509 (514)
+.|++++|.+++++|++.-
T Consensus 540 ~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred hCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.2e-27 Score=258.61 Aligned_cols=445 Identities=12% Similarity=0.051 Sum_probs=343.7
Q ss_pred hcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHH
Q 046312 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVW 115 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 115 (514)
.++...+..++..+... .+.++.++..+...|. ..|++++|...|+++.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL--GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555555443 2445667777777777 77888888888776542 2334556667777777888888888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---C
Q 046312 116 VFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---E 192 (514)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~ 192 (514)
.|+++.+.+ +.+..++..+...+...|+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+. +
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 888877653 3455677777777778888888888888877664 4456667778888888888888888888773 3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALI 272 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 272 (514)
.+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 456778888888888888888888888887753 3456677778888888888888888888887764 33567778888
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..++...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 888888888888888888765 356677778888889999999999999988753 555677778888899999999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRR 427 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~ 427 (514)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.|+++. .+++...+..+...+...|+ .+|...+++
T Consensus 755 A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~ 828 (899)
T TIGR02917 755 AVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHH
Confidence 99999998874 34567788888899999999999999999885 44567888888888888776 348999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 428 LLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
+.+..|+++..+..++.+|...|++++|.++++++.+.+.. .+ ..+ ..+...+...|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~-------~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA-AIR-------YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch-HHH-------HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999988889999999999999999999999987653 22 222 356778999999999999999885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=6.1e-27 Score=253.10 Aligned_cols=416 Identities=11% Similarity=-0.026 Sum_probs=268.5
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|++++|..+++.+.. ..++.+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555544431 2233455555666666666666666666655431 22333455555556666666666666
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
++++.+.+ +.+..++..+...+.+.|+.++|..+++++. +.+...+..++..+.+.|++++|..+++++.+.. +.
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 66665543 3345556666666666666666666666652 2234455566666666777777777777666542 44
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILG 305 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 305 (514)
+..++..+..++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..++..++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55666667777777777777777777766654 23455666677777777777777777776654 345666777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++.+... .|+..++..++.++.+.|++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHH
Confidence 777777777777777776653 344556666667777777777777777777653 4555666667777777777777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 386 AYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 386 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
|.+.++++. .+.+...+..+...|...|+ .++|.+.++.+.+..|+++.++..++.++.+.|+ .+|..+++++.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKD---YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 777777764 33456677777777777777 7778888877777777777777777888877777 77777777776
Q ss_pred hCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 464 NVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
... |.....| ..+...+...|++++|...++++.+.-+
T Consensus 831 ~~~--~~~~~~~-------~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLA--PNIPAIL-------DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhC--CCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 543 2233333 3455567888899999999998887544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1e-19 Score=198.18 Aligned_cols=451 Identities=12% Similarity=0.045 Sum_probs=278.8
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHH-hcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 33 SFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVR-FCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 33 ~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
.++...++...+.+.++...+.. +|+......... ... ..|+.++|+..++++.. +.++..+..+...+...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~--~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAK--LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhh--CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 35566678888888888776543 333322112222 223 46889999999988763 2234567778888888899
Q ss_pred chHHHHHHHHHHHcCC------------------C--------------CCcchH---------------------HHHH
Q 046312 110 PREAVWVFIDMKRRGI------------------K--------------PTEFTY---------------------PFVL 136 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ll 136 (514)
+++|++.++++.+... . |+.... ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999998888754310 0 111000 0112
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CCh---hhHH------------
Q 046312 137 KACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSV---VSWN------------ 199 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------ 199 (514)
..+...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|...|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34556788888888888888764 34677788888888888888888888887732 221 1121
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12345677888888888888888763 335566677778888888888888888888876532 3344444444442 23
Q ss_pred CHHHHHHHHHhcCcCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 046312 280 AVGCARLLFSRMEEIN------------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGM 346 (514)
Q Consensus 280 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 346 (514)
+.++|..+++.+.... ...+..+...+...|++++|...|++.++. .|+ ...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 4444444444433210 112223334444555555555555555543 222 2334444445555555
Q ss_pred HHHHHHHHHHHHHhhCCCCc-hHHH--------------------------------------------HHHHHHHHhcC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM-RIHY--------------------------------------------HTMADILARAG 381 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~-~~~~--------------------------------------------~~li~~~~~~g 381 (514)
+++|...++++.+. .|+ ...+ ..+...+...|
T Consensus 511 ~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 511 RSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555432 111 1111 12334455666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 382 HLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 382 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+.++|.++++.-+ ++...+..+...+...|+ .++|.+.++.+.+..|+++.++..++.+|...|++++|.+.++.
T Consensus 588 ~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~---~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 588 KEAEAEALLRQQP--PSTRIDLTLADWAQQRGD---YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CHHHHHHHHHhCC--CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666666433 344556667778888888 88899999998888888888888889999889999999998887
Q ss_pred HHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHh
Q 046312 462 MKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHM 509 (514)
Q Consensus 462 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 509 (514)
..+... .....+ ..+...+...|++++|.+.++++....
T Consensus 663 ll~~~p--~~~~~~-------~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATAN--DSLNTQ-------RRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCC--CChHHH-------HHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 765432 222222 234455677888888888888887643
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-20 Score=174.95 Aligned_cols=377 Identities=14% Similarity=0.086 Sum_probs=313.6
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYP-FV 135 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l 135 (514)
-..+|..+.+.+. ..|++++|..+++.+.+ ...+..|..+..++...|+.+.|.+.|.+..+ +.|+..... .+
T Consensus 115 ~ae~ysn~aN~~k--erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILK--ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHH--HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 3578888999999 99999999999998763 33457899999999999999999999999887 456655333 33
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCC---hhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERS---VVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 212 (514)
-..+-..|++.+|...+.+.++.. +-=...|+.|...+-..|++..|...|++.+.-| ...|-.|...|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 344455799999999998888763 2235678899999999999999999999986544 457888889999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 213 EAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
+|+..|.+.... .|+ ...+..+...|...|.+|.|...+++.++.... -+..|+.|..++-..|++.+|.+.|.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888765 454 567888888889999999999999999886522 3678999999999999999999999988
Q ss_pred Cc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-
Q 046312 292 EE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM- 366 (514)
Q Consensus 292 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 366 (514)
.. ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|...|++.. .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 75 3467888899999999999999999999887 5566 4568889999999999999999999988 56888
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...|+.+...|-..|+.+.|.+.+.+.. +.|. ....+.|...|...|+ +.+|...++.+.+++|+.+++|-.++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 6789999999999999999999998876 6665 5778889999999999 999999999999999999999887776
Q ss_pred HHHhcCC
Q 046312 445 KYAEVGM 451 (514)
Q Consensus 445 ~~~~~g~ 451 (514)
++--..+
T Consensus 499 ~lq~vcd 505 (966)
T KOG4626|consen 499 CLQIVCD 505 (966)
T ss_pred HHHHHhc
Confidence 6644333
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.9e-19 Score=190.91 Aligned_cols=413 Identities=10% Similarity=0.001 Sum_probs=298.1
Q ss_pred hcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCc---ccHHHH------------H
Q 046312 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVP---IPWNNL------------I 101 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~l------------i 101 (514)
.++...+...++..++.. +-+...+..+...|. +.|++++|+..|++... .|+. ..|..+ .
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~--~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS--QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 355666666666665543 235667777777777 77888888887776642 1221 112211 2
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
..+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 34567778888888888777652 2344456667777777888888888888777663 334455556666654 45677
Q ss_pred HHHHHhhccCCCC------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 182 DACKVFDDMCERS------------VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 182 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
+|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777663321 1234455667788999999999999998863 23456777888889999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC----CH---------HHHHHHHHHHHHcCChHHHH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI----NV---------WTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a~ 316 (514)
...++.+.+.... +...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999998876532 4455555666678889999999999987641 11 12234566788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
.+++. .+.+...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|.+.++.+. .
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99872 2445566777888999999999999999999974 23347788899999999999999999999886 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCHHHHHHHHHHHH-hCCC
Q 046312 396 QP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ------NLVIVANKYAEVGMWEKVSNVRRFMK-NVGL 467 (514)
Q Consensus 396 ~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 467 (514)
.| +...+..+..++...|+ .++|.+.++.+.+..|+++. .+..++..+...|++++|...|++.. ..++
T Consensus 667 ~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 44 45667778888899999 99999999999988766543 45567999999999999999999986 3444
Q ss_pred C
Q 046312 468 K 468 (514)
Q Consensus 468 ~ 468 (514)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=5.3e-19 Score=180.98 Aligned_cols=250 Identities=11% Similarity=0.009 Sum_probs=205.2
Q ss_pred CChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 209 LWLGEAVGYFVKMKDLG-FEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..++... .+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 67899999999998864 234 345677778888899999999999999988753 246678888999999999999999
Q ss_pred HHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC
Q 046312 287 LFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 287 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (514)
.|+++.+ .+...|..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+. .
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9998865 357889999999999999999999999999853 234666777888899999999999999999864 2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH-H-------HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP-I-------VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~-------~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+.+...+..+...+...|++++|.+.|++.. ..|+. . .++.....+...|+ +++|.+.++++.+++|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC
Confidence 3347788889999999999999999999875 43421 1 12222223344688 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+..++..++.++.+.|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998764
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3e-19 Score=173.61 Aligned_cols=295 Identities=12% Similarity=0.051 Sum_probs=137.2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC-C------hhhHHHHHHHHHhCCCh
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER-S------VVSWNVIITVCVENLWL 211 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~~ 211 (514)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 223344555555555555555555555554221 0 13455556666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHH
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC----QLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 287 (514)
++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+.. ..+..+...+.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------- 192 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA---------- 192 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----------
Confidence 66666666665542 334555666666666666666666666666554422211 112233333444
Q ss_pred HHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCch
Q 046312 288 FSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMR 367 (514)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 367 (514)
.|++++|..+|+++.+.. +.+...+..+...+...|++++|.++++++.+. +.....
T Consensus 193 ---------------------~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~ 249 (389)
T PRK11788 193 ---------------------RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLS 249 (389)
T ss_pred ---------------------CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHH
Confidence 444444444444444321 111223333444444444444444444444432 111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
.++..++.+|.+.|++++|...++++. ..|+...+..+...+...|+ ++.|...++.+.+..|++. .+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~---~~~A~~~l~~~l~~~P~~~-~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG---PEAAQALLREQLRRHPSLR-GFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcCHH-HHHHHHHHh
Confidence 233444444444455555544444443 33443334444444444454 5555555554444444433 233333332
Q ss_pred Hh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 046312 447 AE---VGMWEKVSNVRRFMKNVGLKKMKG 472 (514)
Q Consensus 447 ~~---~g~~~~A~~~~~~m~~~~~~~~~~ 472 (514)
.. .|+.+++..++++|.+.++.+.|.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 22 235555555555555555444443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2e-19 Score=174.88 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=202.5
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN---CQLGTALIDMYAKCGA 280 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 280 (514)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456677777777777777653 23445667777777777777777777777766532221 2456778888888999
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY----VTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
+++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..+
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999988875 45678889999999999999999999999886533322 2355677788899999999999
Q ss_pred HHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 354 FHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 354 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
++++.+. .|+ ...+..+...+.+.|++++|.++++++. ..|+ ..++..++.+|...|+ .++|...++.+.
T Consensus 203 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~l~~~~ 276 (389)
T PRK11788 203 LKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD---EAEGLEFLRRAL 276 (389)
T ss_pred HHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 9999864 344 6678888999999999999999999986 4454 3567889999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..|+. ..+..++..+.+.|++++|..+++++.+..
T Consensus 277 ~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 277 EEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999975 456899999999999999999999987764
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2e-19 Score=167.68 Aligned_cols=361 Identities=14% Similarity=0.136 Sum_probs=310.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP-TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY-TNNNLVR 172 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 172 (514)
.+|..+...+-..|++++|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 56888888999999999999999999885 44 4568999999999999999999999998876 45443 3345566
Q ss_pred HHHcCCCHHHHHHHhhccCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 046312 173 FYGSCRRKRDACKVFDDMCE--RS-VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 248 (514)
.+...|++.+|...+.+..+ |. .+.|+.|...+..+|+...|++.|++..+. .|+ ...|..|-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 66778999999998887743 32 468999999999999999999999999875 555 4688899999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-VWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
|...+........ ....++..+...|...|.++-|+..|++..+ |+ ...|+.|..++-..|++.+|...|.+.+..
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999988877642 2567778888899999999999999999876 44 679999999999999999999999999874
Q ss_pred CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHH
Q 046312 326 SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIV 401 (514)
Q Consensus 326 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~ 401 (514)
.|+ ....+.|...+.+.|.++.|..+|....+ +.|. ....+.|...|-++|++++|+.-+++.. ++|+ ...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 455 56788899999999999999999999875 4666 5678899999999999999999999886 7886 578
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 046312 402 LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKM 470 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (514)
|+.+...|...|+ ++.|.+.+.+++..+|.-.+++..|+.+|...|+..+|+.-++.........+
T Consensus 425 ~~NmGnt~ke~g~---v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 425 LSNMGNTYKEMGD---VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHhcchHHHHhhh---HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999999999999 99999999999999999899999999999999999999999999987655433
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.6e-18 Score=173.60 Aligned_cols=352 Identities=9% Similarity=-0.080 Sum_probs=264.7
Q ss_pred CCCChHHHHHHHcccCC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHH
Q 046312 74 SSKNLTYARSILCNYVN-----DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEG 148 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 148 (514)
+..+++...-.|+..++ ..+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556555555555442 1122334556777888999999999998887763 33344556666777789999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 149 MQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
...++++.+.. +.+...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998774 44567788888889999999999999988833 356678888888999999999999998887653
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 226 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
.. +...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..|++..+ .+...+..+
T Consensus 175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 22 22333333 34678899999999999887775444555556667788899999999999988775 356778888
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHH
Q 046312 303 ILGLAQHGYAEE----ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADIL 377 (514)
Q Consensus 303 i~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 377 (514)
...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 888999999885 788999888742 234567888888899999999999999998864 444 55667788889
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNPIV-LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+.|++++|...++++. ..|+... +..+..++...|+ .++|...++.+.+..|+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK---TSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhChhhc
Confidence 99999999999998886 5666533 3345667888899 9999999999999988754
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.9e-17 Score=172.64 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHhcCcCC---H-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHH
Q 046312 276 AKCGAVGCARLLFSRMEEIN---V-WTWSAMILGLAQHGYAEEALELFSNMKNSSISP---NYVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~ 348 (514)
...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+.+|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34455555555555555321 1 111113445555666666666666554422110 0123334444555566666
Q ss_pred HHHHHHHHHHHhhC----------CCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 046312 349 DGYRYFHEMEHVHG----------IKPM---RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHD 413 (514)
Q Consensus 349 ~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 413 (514)
+|..+++.+..... -.|+ ...+..+...+...|+.++|+++++++. .+.+...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666665554210 0111 1223344555566666666666666654 2223455555666666666
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+ .+.|.+.++.+.++.|++...+..++..+.+.|++++|..+++++.+
T Consensus 408 ~---~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 408 W---PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred C---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6 66666666666666666666666666666666666666666666654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.1e-16 Score=166.91 Aligned_cols=401 Identities=10% Similarity=-0.027 Sum_probs=307.7
Q ss_pred cchhhhHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHH
Q 046312 24 LLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLI 101 (514)
Q Consensus 24 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li 101 (514)
....+.-++.|....++...+..++....... +.+...+..+...+. +.|++++|..+|++... +.++..+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYR--NLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34566778899999999999999998887633 455667888999999 99999999999999532 44566778888
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
..+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 8999999999999999999886 234455 8888889999999999999999999874 335666677888889999999
Q ss_pred HHHHHhhccCCCChh--------hHHHHHHHHHh-----CCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHH
Q 046312 182 DACKVFDDMCERSVV--------SWNVIITVCVE-----NLWL---GEAVGYFVKMKDL-GFEPDET-TML----VVLSA 239 (514)
Q Consensus 182 ~A~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-t~~----~ll~~ 239 (514)
+|.+.++.... ++. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+.+
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 99999988765 211 22223333222 2234 7788889988864 2233321 111 11344
Q ss_pred HhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCC
Q 046312 240 CTELGNLSLGKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGY 311 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~ 311 (514)
+...|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999988642 332 22335779999999999999999986522 2456667778899999
Q ss_pred hHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSI-----------SPNY---VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
+++|..+++.+..... .|+. ..+..+...+...|+.++|..+++++... .+-+...+..+...+
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVL 403 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 9999999999987521 1332 24456677888999999999999999874 344577888899999
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
...|++++|++.++++. ..|+ ...+..+...+...++ ++.|+..++.+.+..|+++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE---WRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999986 5665 5666677778899999 99999999999999999874
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=7e-17 Score=164.94 Aligned_cols=327 Identities=9% Similarity=-0.040 Sum_probs=268.1
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 206 (514)
.....++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++++. +.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345667778889999999999999998875 3345566667777788999999999999993 345678888899999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998863 345667888899999999999999999988877644333 33333 34788999999999
Q ss_pred HHHhcCcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHHH
Q 046312 287 LFSRMEEI----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED----GYRYFHEME 358 (514)
Q Consensus 287 ~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 358 (514)
.++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987652 23444556778899999999999999999854 3346677788899999999985 899999998
Q ss_pred HhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 359 HVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 359 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
+. .|+ ...+..+...+.+.|++++|...+++.. ..|+ ...+..+...+...|+ +++|...++.+.+.+|++
T Consensus 278 ~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 278 QF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT 351 (656)
T ss_pred hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc
Confidence 64 454 6788899999999999999999999986 4454 5667778889999999 999999999999999988
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+..++.++...|+.++|...|++..+...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 76666788999999999999999999887654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.1e-17 Score=169.26 Aligned_cols=391 Identities=9% Similarity=-0.053 Sum_probs=289.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|+..++..++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566778889999999999999887 46788889999999999999999999999998874 3456788889999999
Q ss_pred CCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHH------------------
Q 046312 177 CRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG--FEPDETTM------------------ 233 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~------------------ 233 (514)
.|++++|...|..... .+......++..+.. ..+........+.. ..|.....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999987765522 111111222221111 11111111111111 00110000
Q ss_pred ------------HHHHH---HHhccCChHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C
Q 046312 234 ------------LVVLS---ACTELGNLSLGKWVHLQLIERG-TVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEE--I 294 (514)
Q Consensus 234 ------------~~ll~---~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 294 (514)
..+.. -....+++++|...|+...+.+ ..| ....+..+...+...|++++|+..|++..+ |
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00000 0122367889999999998875 223 456788888999999999999999999875 4
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHH
Q 046312 295 -NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHT 372 (514)
Q Consensus 295 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 372 (514)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+. .|+ ...+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l---~P~~~~~~~~ 438 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDFIFSHIQ 438 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CccCHHHHHH
Confidence 35678888899999999999999999998753 334677888889999999999999999999863 454 667778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-------HHH
Q 046312 373 MADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV-------IVA 443 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-------~l~ 443 (514)
+...+.+.|++++|+..|++.. ..| +...+..+...+...|+ +++|.+.++.+.++.|.....+. ..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 8899999999999999999875 444 57888889999999999 99999999999999987543322 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 444 NKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
..+...|++++|.+++++..... |.....+ ..+...+...|++++|...|++..+..+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~-------~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID--PECDIAV-------ATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcHHHH-------HHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 23344799999999999987654 3333344 4567778999999999999999876555
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=5.2e-16 Score=162.30 Aligned_cols=445 Identities=10% Similarity=-0.002 Sum_probs=266.4
Q ss_pred HHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHh--------cccCCCCChHHHHHHHcccCCCCC--cccHHH-HHHH
Q 046312 35 LKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRF--------CTLSSSKNLTYARSILCNYVNDSV--PIPWNN-LIRG 103 (514)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-li~~ 103 (514)
+....+...+..+++.+.+.. +-+..++..+... |. +.+...+++. .+.. .++ +.+... +.+.
T Consensus 118 La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~--q~eqAl~AL~--lr~~-~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 118 LAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLA--QLPVARAQLN--DATF-AASPEGKTLRTDLLQR 191 (987)
T ss_pred HHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhh--hHHHHHHHHH--Hhhh-CCCCCcHHHHHHHHHH
Confidence 344455666666666666654 2223444444444 55 5544444444 2222 333 332333 3677
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAE-ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
|.+.|++++|++++.++.+.+ +.+..-...+-.++.. .++ +.+..+++. .++-++..+..+...|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888888887764 2233335555556665 355 666666442 223566777788888888888888
Q ss_pred HHHHhhccCC-----CChh------------------------------hHHHHHHH-----------------------
Q 046312 183 ACKVFDDMCE-----RSVV------------------------------SWNVIITV----------------------- 204 (514)
Q Consensus 183 A~~~~~~~~~-----~~~~------------------------------~~~~li~~----------------------- 204 (514)
|.++++++.. |+.. ..-.++..
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 8888877721 1100 00000111
Q ss_pred ----------------------------------------HHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhc
Q 046312 205 ----------------------------------------CVENLWLGEAVGYFVKMKDL--GFEPDETTMLVVLSACTE 242 (514)
Q Consensus 205 ----------------------------------------~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~ 242 (514)
..+.|+.++|..+|+..... ...++......++..+.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 23345555555555555441 112233333355555555
Q ss_pred cCChH---HHHH----------------------HHHHHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc
Q 046312 243 LGNLS---LGKW----------------------VHLQLIER-GT-VL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE 293 (514)
Q Consensus 243 ~g~~~---~a~~----------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (514)
.+.+. .+.. .+...... +. ++ +...+..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 44411 1111 11111111 11 22 45566666666665 677777776666553
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHH
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHY 370 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 370 (514)
|+......+...+...|++++|...|+++... .|+...+..+..++...|+.++|..+++...+. .|+ ...+
T Consensus 505 ~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~ 579 (987)
T PRK09782 505 RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALY 579 (987)
T ss_pred hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHH
Confidence 44333223344445788888888888876543 344445556666777788888888888888764 333 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
..+...+.+.|++++|...+++.. ..|+...+..+...+.+.|+ .++|...++.+.+++|+++..+..++.++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~---~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHN---VPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333344445688888888888776 66777778888888888888 88888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHh
Q 046312 450 GMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHM 509 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 509 (514)
|++++|+..+++..+.. |.....| ..+...+...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~l~--P~~~~a~-------~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHKGL--PDDPALI-------RQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888887644 3333334 456677788888888888888776543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.7e-15 Score=155.20 Aligned_cols=414 Identities=11% Similarity=0.051 Sum_probs=252.4
Q ss_pred cChhHHHHHHHHHHHhCCCCCh--HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHH---HHHHHhCCCchHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDA--QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNL---IRGYAWSDRPREA 113 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a 113 (514)
++...+...+....+.. |+. .++ .++..+. ..|+.++|+..+++.. .|+...+..+ ...+...|++++|
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~--~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAG--WAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHH--HcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444332 332 233 5555555 5666666666666665 4443333322 2345555666666
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-
Q 046312 114 VWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE- 192 (514)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 192 (514)
+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 66666665542 223344445555556666666666666666544 34444443333333334444446666666621
Q ss_pred -C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccCChHH---HHHHHHHH
Q 046312 193 -R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT------MLVVLSAC-----TELGNLSL---GKWVHLQL 256 (514)
Q Consensus 193 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t------~~~ll~~~-----~~~g~~~~---a~~~~~~~ 256 (514)
| +...+..++.++.+.|-...|.++.++-.+. +.+...- ....++.- ....++.. |..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 2 3445555556666666666665544432110 1111100 00111100 01112222 33333333
Q ss_pred HHh-CCCCch-h----HHHHHHHHHHhcCCHHHHHHHHHhcCcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 257 IER-GTVLNC-Q----LGTALIDMYAKCGAVGCARLLFSRMEEI----NVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 257 ~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
... +..|.. . ..--.+-++...|++.++++.|+.+..+ ...+-..+..+|...+++++|+.+|+.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 331 222321 1 1223355677889999999999999842 34566778899999999999999999987643
Q ss_pred -----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC------------CCCc-hHHHHHHHHHHHhcCCHHHHHH
Q 046312 327 -----ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG------------IKPM-RIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 327 -----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (514)
..++......|..++...+++++|..+++.+.+... ..|| ...+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122334457788999999999999999999987311 1122 2234456777888999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 389 FIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 389 ~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.++++. .+-|......+...+...|. ...|++.++.+..+.|++..+....+.++...|+|++|..+.+.+.+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDL---PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999986 44478888889999999999 999999999999999999999999999999999999998888776544
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.1e-15 Score=135.26 Aligned_cols=443 Identities=12% Similarity=0.119 Sum_probs=263.5
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHH-HHHHcccCC--CCCcccHHHHHHHH
Q 046312 28 ARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYA-RSILCNYVN--DSVPIPWNNLIRGY 104 (514)
Q Consensus 28 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A-~~~~~~~~~--~~~~~~~~~li~~~ 104 (514)
-..++.+++. +...++--+++.|...|..-+..+--.|.+..+++.+.+.--| ++.|-.|.+ ..+..+|
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------- 190 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------- 190 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-------
Confidence 3444444444 6788888999999999999888888777776553334443322 233333321 2222333
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 184 (514)
+.|...+ ++.+. .+.+..+|.++|.++|+....+.|.+++++......+.+..+||.+|.+-.-..+ .
T Consensus 191 -K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 1222221 22221 2334456666666666666666666666665555445556666666554332222 3
Q ss_pred HHhhcc----CCCChhhHHHHHHHHHhCCChh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHH
Q 046312 185 KVFDDM----CERSVVSWNVIITVCVENLWLG----EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL-GKWVHLQ 255 (514)
Q Consensus 185 ~~~~~~----~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~ 255 (514)
+++.+| ..||..|+|+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 333333 4466666666666666666554 346677788888888888888888888777777644 3344444
Q ss_pred HHHh----CCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------C---CHHHHHHHHHHHHHcCChHHHH
Q 046312 256 LIER----GTVL----NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------I---NVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 256 ~~~~----~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~ 316 (514)
+... .+.| +...|..-+..|.+..+.+-|.++-.-... + ...-|..+....|+....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2222 334455566666677777777776655542 1 1234556677777778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-CH--------H---
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-HL--------K--- 384 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~--- 384 (514)
.+|+.|.-.-.-|+..+...++++..-.|.++-..++|.+++.. |-.-+...-..+...+++.+ +. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 88888877666777788888888888888888888888877763 54444444444444444333 11 0
Q ss_pred --HHHHHHH-------hCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhc
Q 046312 385 --EAYTFIM-------NMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE---PRGSQ--NLVIVANKYAEV 449 (514)
Q Consensus 385 --~A~~~~~-------~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~ 449 (514)
-|..+++ ++. ..-.....+.....+.+.|. .++|.+++..+.+.+ |..+. +..-+.+.-...
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~---~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGR---TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcch---HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1111111 111 33345566667777889999 999999999886654 43332 233666677778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHH
Q 046312 450 GMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQIL 502 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 502 (514)
+..-+|..+++-|...+.+...+.. +.+..++.-.+.-.+|+.-+
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~La--------~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEGLA--------QRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhHHH--------HHHHHhcCcCHHHHHHHhhh
Confidence 8899999999999877775444333 23444444444444444433
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=2.5e-14 Score=146.74 Aligned_cols=394 Identities=10% Similarity=0.026 Sum_probs=292.0
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCC---hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHH
Q 046312 30 QCLSFLKLCCSKKHLYQIHAQIQVSGLQND---AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGY 104 (514)
Q Consensus 30 ~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~ 104 (514)
-++.++...++...+...++... .|+ ......+...|. ..|+++.|..+++++.. +.++..+..++..+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~--~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR--NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44555556677777777766665 343 233333355777 88999999999999863 33456677788889
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 184 (514)
...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.
T Consensus 147 ~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 147 ADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred hhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999999999999775 5666666555555545666666999999999885 446778888999999999999999
Q ss_pred HHhhccCCC---ChhhH--HHHHHHHHh---------CCC---hhHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHh
Q 046312 185 KVFDDMCER---SVVSW--NVIITVCVE---------NLW---LGEAVGYFVKMKDL-GFEPDET-TM----LVVLSACT 241 (514)
Q Consensus 185 ~~~~~~~~~---~~~~~--~~li~~~~~---------~~~---~~~a~~~~~~m~~~-~~~p~~~-t~----~~ll~~~~ 241 (514)
++..+-+.- ....+ ...+.-.++ ..+ .+.|+.-++.+... +-.|... .| .-.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 998876421 11000 001111111 122 34456666665552 2224322 22 23456778
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---------CHHHHHHHHHHHHHcCCh
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---------NVWTWSAMILGLAQHGYA 312 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~ 312 (514)
..|+..++.+.++.+...+.+....+-..+.++|...+++++|+.+|..+... +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 89999999999999999997767778899999999999999999999998542 233457789999999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 313 EEALELFSNMKNSSI-----------SPN--Y-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
++|..+++.+.+.-. .|| - ..+..++..+.-.|+..+|++.++++... -+-|......+.+.+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 999999999987311 132 2 23445667788999999999999999863 3556888889999999
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
..|.+.+|.+.++.+. ..|+ ..+......++...++ +..|..+.+.+.+..|+++.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e---~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE---WHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhCCCchh
Confidence 9999999999998876 5554 5667778888999999 99999999999999999874
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=7.9e-14 Score=146.14 Aligned_cols=418 Identities=10% Similarity=0.004 Sum_probs=291.1
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCC-CCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCc
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSS-SKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRP 110 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 110 (514)
..+....++.+.+..++..+.+.+ ..+..-...|-.+|. . .++ +++..++.... ..++..+..+...+.+.|+.
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~--q~l~~-~~a~al~~~~l-k~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLL--AGQLD-DRLLALQSQGI-FTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH--HhhCH-HHHHHHhchhc-ccCHHHHHHHHHHHHHCCCH
Confidence 344455566677777777777776 333444555656666 5 355 77777766544 56777788888888888888
Q ss_pred hHHHHHHHHHHHcCCC-CCcchHHHH------------------------------HHHHhccCCchHHHHHH-------
Q 046312 111 REAVWVFIDMKRRGIK-PTEFTYPFV------------------------------LKACAEISGLNEGMQVQ------- 152 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------l~~~~~~g~~~~a~~~~------- 152 (514)
++|.++++++...-.. |...++..+ +..+.+.++++.++++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 8888888887543211 222222221 22333344444333332
Q ss_pred ----------------------HHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C----ChhhHHHHHHH
Q 046312 153 ----------------------ANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R----SVVSWNVIITV 204 (514)
Q Consensus 153 ----------------------~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~ 204 (514)
..|.+.. +-+......+.-...+.|+.++|.++|+...+ + +...-+-++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 1111110 11333333344445678899999999988843 2 22344466777
Q ss_pred HHhCCC---hhHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHH
Q 046312 205 CVENLW---LGEAVGY----------------------FVKMKDL-GF-EP--DETTMLVVLSACTELGNLSLGKWVHLQ 255 (514)
Q Consensus 205 ~~~~~~---~~~a~~~----------------------~~~m~~~-~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~ 255 (514)
|.+.+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|...+.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 777665 3333222 2222111 12 23 56667777777766 889899998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 046312 256 LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YV 332 (514)
Q Consensus 256 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 332 (514)
..... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|..++++.++.. |+ ..
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~ 577 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNA 577 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHH
Confidence 87765 4544444455566789999999999998764 445566777888999999999999999998864 43 33
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASS 410 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 410 (514)
.+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|...+++.. ..| +...+..+...+.
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3334444555669999999999999864 6788889999999999999999999999986 555 5677888888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+ .++|...++.+.+..|+++.++..++.++...|++++|...+++..+..
T Consensus 655 ~~G~---~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 655 DSGD---IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999 9999999999999999999999999999999999999999999998654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.7e-14 Score=142.14 Aligned_cols=400 Identities=11% Similarity=0.069 Sum_probs=195.5
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCC--CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc--ch
Q 046312 91 DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIK--PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDV--YT 166 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 166 (514)
..||++-+.|..-+.-.|++..++.+...+...... .-...|..+.+++-..|++++|...|.+..+. .++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 345555666666666666666666666655443211 11224555666666666666666666555443 2332 22
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENL----WLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
+-.|...|.+.|+++.+...|+.+ .+.+..+...|...|...+ ..+.|..++.+..+.- +-|...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 334555666666666666666665 2223344444444444443 3345555555544432 3344455444444
Q ss_pred HhccCChHHHHHHHHH----HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------CCH------HHHHHH
Q 046312 240 CTELGNLSLGKWVHLQ----LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-------INV------WTWSAM 302 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~l 302 (514)
+-. ++...+..++.. +...+-.+.+.+.|.+...+...|.+++|...|..... ++. .+-..+
T Consensus 424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 433 222222333332 23334445556666666666666666666666655432 111 112223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
...+-..++++.|.+.|..+.+. .|+.. .|..+....-..+...+|...+...... ..-++..+..+...+.+..
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhh
Confidence 33444445666666666666553 34322 2333332222335555566666655542 2233333334444555555
Q ss_pred CHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---------CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 382 HLKEAYTFIMNM----PFQPNPIVLRALLSASSIHDA---------KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 382 ~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
.+.-|.+-|..+ ...+|.++.-+|.+.|...-. ....++|.+.+.++++.+|.|..+-+.++-+++.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 555555533332 233455555555543321110 0114555555566666666655555556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHH
Q 046312 449 VGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
.|++.+|..+|.+.++....-. ..|+ .+...|...|++..|.++|+..-.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~--dv~l-------Nlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFE--DVWL-------NLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCC--ceee-------eHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665443211 2242 455556666666666666655443
No 27
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.8e-13 Score=122.50 Aligned_cols=435 Identities=11% Similarity=0.065 Sum_probs=338.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYP 133 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~ 133 (514)
..+...|-...+.=. ..+++..|+++|++... ..+...|-..+..-.++.....|..+|++.... -|-.. .|.
T Consensus 70 R~~~~~WikYaqwEe--sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWy 145 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEE--SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHH
Confidence 345566666666666 78899999999998753 556677888888889999999999999998774 34332 344
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc--CCCChhhHHHHHHHHHhCCCh
Q 046312 134 FVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM--CERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 134 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 211 (514)
.-+..=-..|++..|.++|+...+. .|+...|++.|+.-.+-+.++.|..++++. +.|++.+|--....-.+.|+.
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH
Confidence 4444555679999999999998866 899999999999999999999999999997 789999999999999999999
Q ss_pred hHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 046312 212 GEAVGYFVKMKDL-GF-EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 212 ~~a~~~~~~m~~~-~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 288 (514)
..|..+|....+. |- ..+...|.+....=.+.+.++.|.-+|+-.++.-... ....|..+...--+-|+.....+..
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999998875 21 1112233333333346678889999999888764322 2556666666666677766555443
Q ss_pred --------HhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccCcH
Q 046312 289 --------SRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV-------TFLGVLCAC---NHAGMV 347 (514)
Q Consensus 289 --------~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~ 347 (514)
+.+.+ -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=-+| ....++
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22333 35567777788888889999999999999875 555321 222222222 346899
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHH----HHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADI----LARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
+.+.++++...+ -++....||..+--+ ..++.++..|.+++..+. .-|-..++...|..-...++ ++...
T Consensus 383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e---fDRcR 457 (677)
T KOG1915|consen 383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE---FDRCR 457 (677)
T ss_pred HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh---HHHHH
Confidence 999999999986 344456666654444 457899999999998875 67889999999999999999 99999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHH
Q 046312 423 EVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQIL 502 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 502 (514)
.+.+++++.+|.+..+|...+..-...|+.+.|..+|.-......-..|..-| ...|.-....|.++.|-.+|
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw-------kaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW-------KAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH-------HHhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999998776666777778 67888889999999999999
Q ss_pred HHHHHHhh
Q 046312 503 ETLNLHMK 510 (514)
Q Consensus 503 ~~m~~~~~ 510 (514)
+++.++-+
T Consensus 531 erlL~rt~ 538 (677)
T KOG1915|consen 531 ERLLDRTQ 538 (677)
T ss_pred HHHHHhcc
Confidence 99887543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.8e-13 Score=132.81 Aligned_cols=436 Identities=11% Similarity=0.038 Sum_probs=329.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV------PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF 130 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 130 (514)
.-++.+.+.|.+.|- -.|++..+..+.+.+. ..+ ..+|-.+.++|...|++++|...|-+..+. .+|..
T Consensus 267 ~~nP~~l~~LAn~fy--fK~dy~~v~~la~~ai-~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFY--FKKDYERVWHLAEHAI-KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHh--hcccHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 346788999999888 8999999999998875 222 245888999999999999999999877664 45553
Q ss_pred --hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC----CHHHHHHHhhccCC---CChhhHHHH
Q 046312 131 --TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR----RKRDACKVFDDMCE---RSVVSWNVI 201 (514)
Q Consensus 131 --~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~---~~~~~~~~l 201 (514)
.+.-+...+...|+++.+...|+...+.. +-+..+...|...|...+ ..++|..++.+... .|...|-.+
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 45567788999999999999999998873 445677777777787775 55777777777744 366677777
Q ss_pred HHHHHhCCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCC------chhHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMK----DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER---GTVL------NCQLG 268 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~~~ 268 (514)
...+-...-+ .++.+|.... ..+-.+.....+.+.......|++..|...|...... ...+ +..+-
T Consensus 421 aql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 7777655444 4477776544 4566688889999999999999999999999988766 1222 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE--IN-VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 345 (514)
..+..++-..++.+.|.+.|..+.+ |+ +..|..+.......+...+|...++...... ..++..+..+...+....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 5567777888999999999999987 33 3445455433444578889999999888742 344445555666778888
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh------------cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR------------AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
.+..|..-|..+.++....+|..+.-+|.+.|.+ .+..++|+++|.++. .+-|...-+.+.-.+..
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 8888888777776653444677776677776543 245678999998875 33477888888888999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.|+ ++.|..++..+.+-..+.+++|..++.+|..+|+|..|+++|+.....-.+.+...- ++.+..++..
T Consensus 659 kg~---~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v-------l~~Lara~y~ 728 (1018)
T KOG2002|consen 659 KGR---FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV-------LHYLARAWYE 728 (1018)
T ss_pred ccC---chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH-------HHHHHHHHHH
Confidence 999 999999999999988777889999999999999999999999998766553332221 2567888999
Q ss_pred CcChHHHHHHHHHHHHHhh
Q 046312 492 QVELAGIYQILETLNLHMK 510 (514)
Q Consensus 492 ~~~~~~a~~~~~~m~~~~~ 510 (514)
.|...++.+.+...++..+
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999888777665544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=5.8e-12 Score=119.28 Aligned_cols=414 Identities=11% Similarity=0.037 Sum_probs=316.8
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHH----HHHcCCCCCcchHHHHHHHHhccCCchH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFID----MKRRGIKPTEFTYPFVLKACAEISGLNE 147 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 147 (514)
+...++.|..++++..+ +.+...|.+-...--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 55668888888887653 45667787777777788998888888766 4556888888888888888999999999
Q ss_pred HHHHHHHHHHhCCCCC--cchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 148 GMQVQANVTKSGLDSD--VYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 148 a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
+..+....+..|+.-. ..||..-...|.+.+.++-|..+|....+ .+...|...+..--..|..++...+|++..
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999988888876532 46788888889999999999998887733 456677777777777888899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHH
Q 046312 223 DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWS 300 (514)
Q Consensus 223 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 300 (514)
..- +-....+.......-..|++..|..++.++.+.... +..++.+-+.....+.+++.|..+|.+... +....|.
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~m 655 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWM 655 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhH
Confidence 762 334445555566667789999999999998888754 788888888999999999999999988764 6677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 046312 301 AMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379 (514)
Q Consensus 301 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 379 (514)
.-+...--.+..++|.+++++.++. -|+ ...|..+.+.+.+.++.+.|...|..=.+ .++-....|-.|.+.=-+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHH
Confidence 7777777788899999999888874 455 45567777888888888888887776554 333345677777777778
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC-----------------------
Q 046312 380 AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR----------------------- 434 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~----------------------- 434 (514)
.|++-+|..+|++.. .+-+...|-..|..-.+.|+ .+.|...+.++.+--|.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn---~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN---KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 888888888888876 33367888888888888888 88888887777665444
Q ss_pred -------CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 435 -------GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 435 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
++.+....+..+....++++|.+-|.+....+..-...+.| |+.-+.++|.-++-.+++.+-
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~---------fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW---------FYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH---------HHHHHHHhCCHHHHHHHHHHH
Confidence 35566778888888888999999999887765443333444 667788888777777766654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.1e-13 Score=135.61 Aligned_cols=363 Identities=13% Similarity=0.065 Sum_probs=253.9
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 212 (514)
.+.+...|++++|..++.+.++.. +.+...|.+|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 333444488888888888887775 456777888888888888888877765443 4456677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG----TALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~ 288 (514)
.|.-.|.+.++.. +++...+-.-...|-+.|+...|...+.++.....+.+..-+ ...++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888764 445555555666777788888888888888776543332222 33455666677777777777
Q ss_pred HhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHH
Q 046312 289 SRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNS---------------------------SISPNYVTFLG 336 (514)
Q Consensus 289 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------g~~p~~~~~~~ 336 (514)
+.... .+...++.++..+.+...++.|......+... ++.++...+.
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r- 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR- 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-
Confidence 76553 34456777788888888888888877777651 1222322312
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKP--MRIHYHTMADILARAGHLKEAYTFIMNMP---FQPNPIVLRALLSASSI 411 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~ 411 (514)
+.-++.+.+..+....+..-.... .+.| +...|.-+.++|...|++++|+.+|..+. ..-+...|--+...|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 223444555555555555555554 5334 46788999999999999999999999996 22256789999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.|. ++.|.+.++++....|++.++...|...|.+.|+.++|.+++..+...+....++..|..-..+......-+.+
T Consensus 462 l~e---~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGE---YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred Hhh---HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999875444445666662211111122233555
Q ss_pred CcChHHHHHHHHHH
Q 046312 492 QVELAGIYQILETL 505 (514)
Q Consensus 492 ~~~~~~a~~~~~~m 505 (514)
.|+.++=...-..|
T Consensus 539 ~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 539 VGKREEFINTASTL 552 (895)
T ss_pred hhhHHHHHHHHHHH
Confidence 56655544443333
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=6.8e-13 Score=119.41 Aligned_cols=398 Identities=10% Similarity=0.029 Sum_probs=261.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh--ccCCchHHH-HHHHH-----------------
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA--EISGLNEGM-QVQAN----------------- 154 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~-~~~~~----------------- 154 (514)
.+-|.|+.. ..+|..+++.-+|+.|.+.|++.+...-..|++..+ ...++.-|+ +-|-.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555443 346777777778888877777666655444444322 111111110 11111
Q ss_pred --HHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 155 --VTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 155 --~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
+.-.-.+.+..++..||.++|+-...+.|.+++++- .+-+..+||.+|.+-.- ....+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 111123557889999999999999999999999887 33477788888865332 22378899999999999
Q ss_pred CHHHHHHHHHHHhccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCc----------
Q 046312 229 DETTMLVVLSACTELGNLSL----GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC-ARLLFSRMEE---------- 293 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~---------- 293 (514)
|..|||.++.+..+.|+++. |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998776 45788899999999999999999999999988865 4444444431
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
.+...|...|..|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|.....+.....|+.|+-. -.-
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~ 430 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYF 430 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eec
Confidence 24566777788888888888888776655432 13344 234677778888888899999999999875 667
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCCCcch----------HHHHHHHHHH--
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMPF---QPNPIVLRALLSASSIHDAKYQDG----------VGNEVRRRLL-- 429 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~~~----------~a~~~~~~~~-- 429 (514)
|+..+...++++..-.|+++-.-+++.++.. .-+.....-++.-.++..-..... +....+..+.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888988888888877741 111111111222222222100000 0000111111
Q ss_pred ---hcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEE---EEEecccCCcChHHHHHH
Q 046312 430 ---ELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIH---RFYSGYDSQVELAGIYQI 501 (514)
Q Consensus 430 ---~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~ 501 (514)
++. .-.+......+-.+.+.|+.++|.+++..+...+-. .|++ .+.| +++.+..+...+.+|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~-ip~~------p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK-IPRS------PLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc-CCCC------cchhhHHHHHHHHHhcCCHHHHHHH
Confidence 111 112345667888889999999999999999755543 1111 1224 556677777888888888
Q ss_pred HHHH
Q 046312 502 LETL 505 (514)
Q Consensus 502 ~~~m 505 (514)
++-+
T Consensus 584 lQ~a 587 (625)
T KOG4422|consen 584 LQLA 587 (625)
T ss_pred HHHH
Confidence 7766
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.4e-12 Score=118.26 Aligned_cols=380 Identities=9% Similarity=-0.010 Sum_probs=246.1
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCc-ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc--ch--
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVP-IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE--FT-- 131 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~-- 131 (514)
-.+...|.+-|. ......+|+..++-+.. .|+. ..--.+-..+.+...+.+|+++|+..... .|+. .+
T Consensus 201 fsvl~nlaqqy~--~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 201 FSVLFNLAQQYE--ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred HHHHHHHHHHhh--hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 345556667777 67778888888876542 1222 11112234455556666666666554443 2222 11
Q ss_pred --HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-----------------
Q 046312 132 --YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE----------------- 192 (514)
Q Consensus 132 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------------- 192 (514)
.+.+--.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|..
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 222222345666666666666666555 45554444455555555666666666655511
Q ss_pred -----------------------------------------CCh-------------hhHHH--------HHHHHHhCCC
Q 046312 193 -----------------------------------------RSV-------------VSWNV--------IITVCVENLW 210 (514)
Q Consensus 193 -----------------------------------------~~~-------------~~~~~--------li~~~~~~~~ 210 (514)
|+- ..+.. -...+.++|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 100 00100 1124778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHH--HHHH----------------------------------HhccCChHHHHHHHH
Q 046312 211 LGEAVGYFVKMKDLGFEPDETTMLV--VLSA----------------------------------CTELGNLSLGKWVHL 254 (514)
Q Consensus 211 ~~~a~~~~~~m~~~~~~p~~~t~~~--ll~~----------------------------------~~~~g~~~~a~~~~~ 254 (514)
++.|+++++-+.+..-+.-...-+. ++.. ....|+++.|...++
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999888765432211111111 1111 112456777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046312 255 QLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY 331 (514)
Q Consensus 255 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 331 (514)
+.+...-.-....||. .-.+-..|++++|++.|-++.. .+......+...|-...+..+|++++...... ++.|+
T Consensus 515 eal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 7776554333334432 2345667888888888876653 56667777777788888888888888665542 44557
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSAS- 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~- 409 (514)
.....|...|-+.|+-.+|.+.+-+--+ -++.+..+...|...|....-+++|+..|++.. +.|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7788888999999999999888766654 456678888888899999999999999999987 899999999888766
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+.|+ +++|...++...+..|.+.+.+..|++.+...|..
T Consensus 671 rrsgn---yqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 671 RRSGN---YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred Hhccc---HHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 46778 99999999999999999999999999999888753
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.7e-15 Score=139.56 Aligned_cols=254 Identities=17% Similarity=0.104 Sum_probs=108.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTM-LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555666666666666544333212333333 33333444566677777777776665533 45556666666 57777
Q ss_pred HHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046312 281 VGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEM 357 (514)
Q Consensus 281 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 357 (514)
+++|.++++..-+ ++...+..++..+.+.++++++..+++++.... .+.+...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766533 556667777888888899999999998877532 3456677778888888999999999999999
Q ss_pred HHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 358 EHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 358 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.+. .|+ ......++..+...|+.+++.++++... .+.|...+..+..++...|+ .+.|...++++.+.+|+
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccccc
Confidence 875 564 6677888888889999998877777664 33455677888899999999 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
++.....++.++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988764
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=2.4e-12 Score=124.25 Aligned_cols=284 Identities=11% Similarity=0.015 Sum_probs=137.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH--HHHHHHHcCCCHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNN--NLVRFYGSCRRKRDA 183 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A 183 (514)
.|+++.|.+.+....+.. +++. .|.....+..+.|+.+.|...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 355555555554433321 1111 1222233335556666666666655543 33332221 223455555555555
Q ss_pred HHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 184 CKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
...++++. +.+......+...|.+.|+|++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 55555552 223445555555566666666666666666555433211 111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGV 337 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (514)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 01112222222223334444444444432 34555555666666666666666666665552 3333211 2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~ 416 (514)
+.+....++.+++.+..+...++ .+-|...+..+...+.+.|++++|.+.|+.+. ..|+...+..+...+...|+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~-- 376 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK-- 376 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--
Confidence 22333446666666666666543 12224445555666666666666666666654 55666666666666666666
Q ss_pred cchHHHHHHHHHHhc
Q 046312 417 QDGVGNEVRRRLLEL 431 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~ 431 (514)
.++|.+.+++...+
T Consensus 377 -~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 -PEEAAAMRRDGLML 390 (398)
T ss_pred -HHHHHHHHHHHHhh
Confidence 66666666655443
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-10 Score=105.80 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
+.|.-.+.+.|+-.++.++|...|++..+.| ...|+.+..-|....+...|.+-++..++-. +-|...|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 4455566777888889999999999988733 4678888899999999999999999998853 55778899999999
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.-.+...-|+-+|++... ++| |...|.+|.++|.+.++.++|.+-|.+.. ...+...+..|...+...++ .
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~ 482 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---L 482 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---H
Confidence 999999999999999874 355 58899999999999999999999998885 23355888889999999999 9
Q ss_pred hHHHHHHHHHHhc-------CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 419 GVGNEVRRRLLEL-------EPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 419 ~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
++|...+++..+. .|....+..-|+.-+.+.+++++|..+......-
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------------------------- 536 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------------------------- 536 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------------------
Confidence 9999988888763 2333334456888888999999998877655332
Q ss_pred CcChHHHHHHHHHHHHHhh
Q 046312 492 QVELAGIYQILETLNLHMK 510 (514)
Q Consensus 492 ~~~~~~a~~~~~~m~~~~~ 510 (514)
....++|-.+++++++.+.
T Consensus 537 ~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 ETECEEAKALLREIRKIQA 555 (559)
T ss_pred CchHHHHHHHHHHHHHhcC
Confidence 2356788888888887664
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=8.5e-13 Score=128.07 Aligned_cols=285 Identities=9% Similarity=-0.056 Sum_probs=131.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
.|+++.|.+.+.+..+. .|+ ...+.....+..+.|+.+.+.+++....+....+...+.......+...|+++.|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554443 222 222333344445555555555555555443322222233333555555556666655
Q ss_pred HHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHHh
Q 046312 287 LFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC---NHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 287 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 360 (514)
.++.+.+ | +...+..+...+...|++++|.+++..+.+.++.+.......-..++ ...+..+.+...+..+.+.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555543 2 34455555556666666666666666666554322211111111111 1112222222233333322
Q ss_pred h--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHH--HHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 361 H--GIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLR-ALLSA--SSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 361 ~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
. ..+.+...+..+...+...|+.++|.+++++.. ..||..... .++.. ....++ .+.+.+.++...+..|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHHHHhCCC
Confidence 0 001245555555666666666666666665554 234332100 01111 122233 55556666666666666
Q ss_pred CC--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 435 GS--QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 435 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
++ ....++++.+.+.|++++|.+.|+........|.+... ..+..-+...|+.++|.++|++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~--------~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL--------AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66 55556666666666666666666633222222222221 13344455566666666666553
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.9e-14 Score=132.61 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=65.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
...+.+.|++++|+++++.......+|+.. -|..+...+...++.+.|.+.++++...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444555566666666664433332123332 23333334445566666666666665554 2244445555554 45566
Q ss_pred HHHHHHHhhccC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 046312 180 KRDACKVFDDMC--ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEPDETTMLVVLSACTELGNLSLGKWVHLQL 256 (514)
Q Consensus 180 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 256 (514)
+++|.++++... .++...+..++..+.+.++++++..+++...... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666655555442 2334445555555556666666666666554321 2334444555555555556666666666555
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046312 257 IERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333 (514)
Q Consensus 257 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 333 (514)
++..+. |..+...++..+...|+.+++.++++...+ .|...|..+..+|...|+.++|+.+|++..+.. +.|...
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 555422 344445555555555555554444443332 334444555555555555555555555554421 223444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEM 357 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~ 357 (514)
...+..++...|+.++|..+..++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 445555555555555555554443
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.9e-10 Score=109.19 Aligned_cols=366 Identities=11% Similarity=0.010 Sum_probs=248.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG 175 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 175 (514)
+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....++++++..- +.....|.....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4444555555566666666666666554 23344455555555555677777777777776652 334445555556666
Q ss_pred cCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046312 176 SCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWV 252 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 252 (514)
..|++..|..++... ...+...|-+.+.......+++.|..+|.+.... .|+...|.--++.-.-.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 677777777777666 2235556777777777777777777777776654 45555555444444556777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
+++.++.- +.-...|-.+...+-+.++.+.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.+..+ +-
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 77776653 22345666667777777777777777776654 3 34567777676677777777777777776653 34
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSAS 409 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 409 (514)
+...|...|+.-.+.|..+.|..++.+..+ .++.+...|..-|....+.++-....+.+++.. .|+...-.+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 556677777777777877777777777776 445556667777766666666666666666655 3455555556666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEE
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWV 476 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 476 (514)
..... ++++.+-+.++.+.+|++.++|.-+...+.+.|.-++-.+++.+.... +|+-|..|+
T Consensus 828 w~e~k---~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~ 889 (913)
T KOG0495|consen 828 WSEKK---IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQ 889 (913)
T ss_pred HHHHH---HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHH
Confidence 66667 999999999999999999999999999999999999999999988654 366677783
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3.1e-11 Score=116.50 Aligned_cols=275 Identities=8% Similarity=-0.006 Sum_probs=198.5
Q ss_pred CCCHHHHHHHhhccCCC--Chh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 046312 177 CRRKRDACKVFDDMCER--SVV-SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTML--VVLSACTELGNLSLGKW 251 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~ 251 (514)
.|++++|++.+....+. +.. .|-....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665332 122 2333334446778888888888877664 44443222 33556677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NV--------WTWSAMILGLAQHGYAEEALELFS 320 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~~~~~~a~~~~~ 320 (514)
.++.+.+... -+......+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888777663 35667777788888888888888777777641 11 234444444455566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C
Q 046312 321 NMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-N 398 (514)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~ 398 (514)
.+-+. .+.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 3456778888999999999999999999999864 5555332 2333445699999999998875 445 4
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 399 PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...+.++...|...++ +++|.+.++.+.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5668889999999999 9999999999999999854 678999999999999999999998754
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=8.1e-12 Score=121.24 Aligned_cols=286 Identities=11% Similarity=-0.016 Sum_probs=140.0
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHcCCCHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEFT-YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY--TNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A 183 (514)
.|+++.|.+.+.+..+. .|+... +.....+....|+.+.|.+.+.+..+. .|+.. +.......+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555544332 233222 222234444555555555555555433 22221 222234444555555555
Q ss_pred HHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHh
Q 046312 184 CKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV-VLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
...++.+. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+.. -..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a-------------------- 231 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA-------------------- 231 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH--------------------
Confidence 55555541 123344445555555555555555555555554422 1111110 0000
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT--F 334 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~ 334 (514)
+..++..-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+.. ||... +
T Consensus 232 --------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~ 301 (409)
T TIGR00540 232 --------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISL 301 (409)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchh
Confidence 00001110111122333334444432 356666666677777777777777777776642 33221 1
Q ss_pred -HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 046312 335 -LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN--M-PFQPNPIVLRALLSASS 410 (514)
Q Consensus 335 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~ 410 (514)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 1111122334666667777766665422222114455667777777777777777773 2 25677776777777777
Q ss_pred hcCCCCcchHHHHHHHHHHh
Q 046312 411 IHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~ 430 (514)
..|+ .++|.+++++...
T Consensus 382 ~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HcCC---HHHHHHHHHHHHH
Confidence 7777 7777777776544
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=2e-10 Score=113.22 Aligned_cols=458 Identities=12% Similarity=0.081 Sum_probs=315.3
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCc
Q 046312 33 SFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRP 110 (514)
Q Consensus 33 ~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 110 (514)
..+-+.++...+..+....++.. +.....|..|-..|- ..|+.+.+...+-...+ +.|..-|-.+-....+.|++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE--qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE--QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH--HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 34444588899988888888765 556788889999999 99999999877754431 55667788888888899999
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH----HHHHHHHcCCCHHHHHHH
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNN----NLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~ 186 (514)
++|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-+. ..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998863 4455555555677888999999999999998875322322222 334556677777888888
Q ss_pred hhccCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---------------------------CHHHHH
Q 046312 187 FDDMCE-----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP---------------------------DETTML 234 (514)
Q Consensus 187 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---------------------------~~~t~~ 234 (514)
++.... -+...++.++..+.+...++.|......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 877743 245578899999999999999999888887622122 2222 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHH
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQ 308 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 308 (514)
.++-++.+.+..+....+.....+.. +.-+...|.-+.++|...|++.+|+.+|..+.. .+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 33445556666677777777777776 444577888999999999999999999999885 457789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH-------HhhCCCCchHHHHHHHHHHHhc
Q 046312 309 HGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEME-------HVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~ 380 (514)
.|.+++|.+.|+..+.. .|+ ...--.|...+.+.|+.++|.+.+..+. +..+..|+..........+.+.
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999999999874 444 3444556677889999999999998843 1124556666666667778888
Q ss_pred CCHHHHHHHHHhCC--------CCC-----------------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-----Hh
Q 046312 381 GHLKEAYTFIMNMP--------FQP-----------------NPIVLRALLSASSIHDAKYQDGVGNEVRRRL-----LE 430 (514)
Q Consensus 381 g~~~~A~~~~~~~~--------~~p-----------------~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~-----~~ 430 (514)
|+.++=..+...|. +-| .......++.+-.+.++ ....+..+..- .+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD---DNVMEKALSDGTEFRAVE 616 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc---hHHhhhcccchhhhhhhh
Confidence 88876444433331 111 11222223333333333 11111111111 11
Q ss_pred cC---CCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-----eeEEEECCeEEEEEecccCCcChHHHHHH
Q 046312 431 LE---PRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKG-----MSWVELGGSIHRFYSGYDSQVELAGIYQI 501 (514)
Q Consensus 431 ~~---p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 501 (514)
.. -++ ...+..++..+.+.|++++|..+...+.+..+-..+. .-| ..+.+....++...|++.
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~--------~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQF--------LGLKASLYARDPGDAFSY 688 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH--------HHHHHHHhcCCHHHHHHH
Confidence 11 111 1345588889999999999999999988765422111 112 233456677888999999
Q ss_pred HHHHHHH
Q 046312 502 LETLNLH 508 (514)
Q Consensus 502 ~~~m~~~ 508 (514)
+..|..+
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 9888776
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.1e-11 Score=111.78 Aligned_cols=214 Identities=17% Similarity=0.151 Sum_probs=172.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.-.|+.-.+..-|+..++....++. .|--+..+|....+.++....|.+..+ .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3467888888889998887755443 266677789999999999999999876 356677777777888889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 318 LFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 318 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
=|++.+. +.|+ ...|-.+..+..+.+.++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+... .
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999987 4554 566777777788899999999999999985 45568889999999999999999999998874 3
Q ss_pred CCC---------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 396 QPN---------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 396 ~p~---------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.|+ ..+-..++.. .-.++ +..|.+++.++.+++|.-..+|..|+..-.+.|+.++|+++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d---~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKED---INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhh---HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222222222 22366 9999999999999999988899999999999999999999999754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9e-11 Score=107.09 Aligned_cols=341 Identities=11% Similarity=0.049 Sum_probs=229.3
Q ss_pred CCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFT--YPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|....|...|.+.. ..-|..|.+.+....-..+.+.+..+- .|.+.|..- =-.+..++-...+.+++.+-
T Consensus 176 ~~~~~s~A~~sfv~~v-~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVV-NRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred hhchHHHHHHHHHHHH-hcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665 444444554444332222222222111 112212111 11234456666788888888
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
.+.+...|++-+...-+....+.....|+++|+.+|+++.+. |..+|..++- ++..+..- .++.+-.-.-
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skL--s~LA~~v~~i 325 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKL--SYLAQNVSNI 325 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHH--HHHHHHHHHh
Confidence 888888887777766666777778889999999999999543 5567766653 33332221 2222211111
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 226 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
-+--..|+..+.+.|+-.++.+.|..+|+..++.+.. ....++.+.+-|....+...|.+-++...+ .|-..|-.|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 1334467788888888888999999999998887633 567888888899999999999999988876 355778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
.++|.-.+...-|+-+|++.... +| |...|.+|..+|.+.++.++|...|..... .-..+...+..|.+.|-+.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHH
Confidence 89999888888899999988874 45 567788888999999999999999988886 33446677888899999999
Q ss_pred CHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 382 HLKEAYTFIMNMP--------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 382 ~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
+..+|...|++-. ..|. ....--|..-+.+.++ +++|.........-+
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~---~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD---FDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHhcCC
Confidence 9999888776652 2221 2222224455667777 777777666555443
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4.7e-11 Score=104.04 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=125.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCC--cchHHHHHHHHHcCCCHHHHH
Q 046312 108 DRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG-LDSD--VYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 108 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~A~ 184 (514)
.++++|+++|-+|.+.. +-+..+-.+|-+.|.+.|..+.|+.+.+.+.++. ++-+ ......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666665531 2222344455556666666666666666665431 0000 112233444455555566666
Q ss_pred HHhhccCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 185 KVFDDMCERS---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 185 ~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
.+|..+.+.+ ..+...|+..|....+|++|+++-+++.+.+..+...- +
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---I------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---I------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---H-------------------------
Confidence 6655554322 22444455555555555555555555555433322110 0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
...|--|...+....++++|..++.+..+.| +..--.+...+...|+++.|.+.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1112223333333444555555555444321 2222233344555666666666666665544333344455555
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHH
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF-IMNMPFQPNPIVLRALLSAS 409 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~ 409 (514)
.+|...|+.++...++..+.+. .++...-..+.+.-....-.+.|... .+++..+|+...+..|+..-
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 6666666666666666655543 22222222222222222223333333 33344556666655555443
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=5.1e-11 Score=103.82 Aligned_cols=222 Identities=10% Similarity=0.082 Sum_probs=146.8
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH---HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc------h
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN---NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF------T 131 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~ 131 (514)
..|-.=++++. +.+.+.|..+|-+|. .-|+.+|. +|-..|.+.|..+.|+++-..+.++ ||.. .
T Consensus 37 r~Yv~GlNfLL---s~Q~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lA 109 (389)
T COG2956 37 RDYVKGLNFLL---SNQPDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLA 109 (389)
T ss_pred HHHHhHHHHHh---hcCcchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 34445555555 688899999999998 67776655 5778899999999999999988764 3332 3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHH--------HHHH
Q 046312 132 YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWN--------VIIT 203 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~li~ 203 (514)
.-.|.+-|...|-+|.|+.+|..+.+.| ..-......|+..|-...++++|.+.-+++.+.+...|+ -+..
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 3445667888999999999999998765 334567788999999999999999999888554444333 3444
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
.+....+.+.|...+++..+.+ |+. ..-..+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 4445567777777777766653 222 1222333444555555555555555555554444444444444444444444
Q ss_pred HHHHHHHhcC
Q 046312 283 CARLLFSRME 292 (514)
Q Consensus 283 ~A~~~~~~~~ 292 (514)
+....+..+.
T Consensus 267 ~~~~fL~~~~ 276 (389)
T COG2956 267 EGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.2e-09 Score=100.22 Aligned_cols=451 Identities=10% Similarity=0.037 Sum_probs=327.1
Q ss_pred hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCc-ccHHHHHHHHHhCCCchHHHHHHH
Q 046312 41 KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVP-IPWNNLIRGYAWSDRPREAVWVFI 118 (514)
Q Consensus 41 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 118 (514)
..+++++|+..+.-. ..+...|-..+.+=. ++..+..|+.+|++... -|.+ ..|-..+..--..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Em--knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEM--KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHH--hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 466678888777655 567788888888877 99999999999998752 2222 345555555556799999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC------
Q 046312 119 DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------ 192 (514)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------ 192 (514)
+..+ ..|+...|.+.++.=.+...++.|..+++..+-. .|+..+|-.....-.++|.+..|..+|+...+
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9877 5899999999999999999999999999998755 58999999888888999999999999988733
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHhCCC
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWV--------HLQLIERGTV 262 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~ 262 (514)
.+...+++....-.++..++.|.-+|+-..+. ++-+ ...|......=-+-|+......+ ++.+++.+ +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 13345666666556678889999999888876 2323 33444444444455665444332 23344443 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCH---HHHHHH--------HHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INV---WTWSAM--------ILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l--------i~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
.|-.++--.++.-...|+.+...++|++... |.. ..|..- +-.-....+++.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 4667777788888889999999999998874 211 122221 12224578999999999999883 444
Q ss_pred CHHHHHHHH----HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 046312 330 NYVTFLGVL----CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLR 403 (514)
Q Consensus 330 ~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 403 (514)
...||..+= ..-.++.++..|.+++.... |..|...+|...|..=.+.+.+|.+..++++.. ..| |..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 456665443 33456789999999999987 889999999999999999999999999999986 555 678888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCe
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS--QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGS 481 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 481 (514)
.....-...|+ .+.+..++..+......+. ..+-..++--...|.++.|..+++++.++.--. ..||....
T Consensus 476 kyaElE~~Lgd---tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvWisFA~- 548 (677)
T KOG1915|consen 476 KYAELETSLGD---TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVWISFAK- 548 (677)
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHHHhHHH-
Confidence 88888888999 9999999999987553322 245577777789999999999999998754311 13531000
Q ss_pred EEEEEecccCCc-----------ChHHHHHHHHHHHHHhhhc
Q 046312 482 IHRFYSGYDSQV-----------ELAGIYQILETLNLHMKVL 512 (514)
Q Consensus 482 ~~~~~~~~~~~~-----------~~~~a~~~~~~m~~~~~~~ 512 (514)
...-.+....+ ....|-.+|++-...+++.
T Consensus 549 -fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 549 -FEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred -HhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 00001111222 4667778888877776654
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=7.3e-11 Score=106.02 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=128.5
Q ss_pred CCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046312 177 CRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
.|++.+|+++..+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.-..++...+.+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544411 2233444444555555555555555555554422334444444445555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC----C-------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI----N-------VWTWSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
+++.+.+.. ++.+......+|.+.|++.....++.++.+. + ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555555422 3444455555555555555555555555431 1 124444444444444444433444443
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 046312 323 KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPI 400 (514)
Q Consensus 323 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~ 400 (514)
-.+ .+-++..-..++.-+.+.|+.++|.++..+..++ +..|+.. .+ -...+-++.+.-.+..++-. ..-++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 322 2333333344444455555555555555555543 3333311 11 11223333333333322221 111224
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.+|...|.+++. +.+|..+++.+....|+ ...|..++.++.+.|+..+|.++.++..
T Consensus 330 L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKL---WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44455555555555 55555555555555554 2345555555555555555555555444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.6e-11 Score=117.05 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=212.3
Q ss_pred CHHHHHHHhhccCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHH-H
Q 046312 179 RKRDACKVFDDMCE--RSV-VSWNVIITVCVENLWLGEAVGYFVKMKDLG--FEPDETTMLVVLSACTELGNLSLGKW-V 252 (514)
Q Consensus 179 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~-~ 252 (514)
+..+|...|.+++. +|+ .....+..+|...+++++|.++|+...+.. ..-+..+|.+.+..+-+ +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45778888888633 333 344566789999999999999999998752 22356788887765432 11222 2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
-+.+.+.. +..+.+|-++.++|.-.++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 23333333 446889999999999999999999999999874 457788888888899999999999998874 333
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHH
Q 046312 330 N-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQ-PNPIVLRAL 405 (514)
Q Consensus 330 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l 405 (514)
. ...|-.+...|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.|+|+.+++++. .. -|+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 34566677789999999999999999984 4665 5566677888999999999999999985 23 344444444
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+...++ +++|...++++.++-|++..+|..++..|.+.|+.+.|..-|--+.+...
T Consensus 564 ~~il~~~~~---~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGR---YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcc---hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555667788 99999999999999999999999999999999999999998887766544
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=6.6e-11 Score=107.56 Aligned_cols=363 Identities=12% Similarity=0.072 Sum_probs=223.4
Q ss_pred cHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHhccCCchHHHHHHHHHHHhCCCCCc------c
Q 046312 96 PWNNL---IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYP-FVLKACAEISGLNEGMQVQANVTKSGLDSDV------Y 165 (514)
Q Consensus 96 ~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~ 165 (514)
+|+.| ..-|..+.-+.+|+..|+-+.+...-|+..... .+-+.+.+.+.+.+|+++++..... .|++ .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 45444 344555666788999999888877777776432 3456678889999999999988776 3332 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC------------CHH
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMC--ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP------------DET 231 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------------~~~ 231 (514)
+.+.+.-.+.+.|+++.|..-|+... .|+..+--.|+-++..-|+.++..+.|.+|+.....| +..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34445556788999999999999984 4665554445555556788888888898886643222 221
Q ss_pred HHHHHHH---------------------------------------------------------------HHhccCChHH
Q 046312 232 TMLVVLS---------------------------------------------------------------ACTELGNLSL 248 (514)
Q Consensus 232 t~~~ll~---------------------------------------------------------------~~~~~g~~~~ 248 (514)
..+..+. .+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 1111111 1334455555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHH------------------------------------HHHHhcCCHHHHHHHHHhcC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALI------------------------------------DMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~~~ 292 (514)
|.++++-..+..-..-...-+.|- +.-...|++++|.+.|++..
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 555555444332111111111000 00012455556666665555
Q ss_pred cCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 293 EINVWTWSAMIL---GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 293 ~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
..|..+-.+|.. .+-..|+.++|++.|-++..- +.-+......+...|....+..+|.+++.+... -++.|+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 544443333322 244556666666666555432 223444555566666666677777777666653 34445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-HHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNM-P-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV-IVANKY 446 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~ 446 (514)
...|.+.|-+.|+-..|.+..-+- . ++-+..+..-|..-|....- .+++...++++.-+.|+.. -|. .++.++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~ekai~y~ekaaliqp~~~-kwqlmiasc~ 670 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---SEKAINYFEKAALIQPNQS-KWQLMIASCF 670 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---HHHHHHHHHHHHhcCccHH-HHHHHHHHHH
Confidence 777777777777777777665333 3 44566666666666666555 7888999999988999855 455 556667
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 046312 447 AEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.+.|++++|.++++...++-.
T Consensus 671 rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCc
Confidence 789999999999999987643
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=2.2e-11 Score=116.19 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=218.0
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC------CChhhHHHHHHHHHhCCChhHHHHH
Q 046312 144 GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------RSVVSWNVIITVCVENLWLGEAVGY 217 (514)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 217 (514)
+..+|...|+.+.+. +.-+..+...+..+|...+++++|+++|+.+.. .+...|.+.+-.+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 557788888885444 233346667788999999999999999999832 367788877654432 222222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH
Q 046312 218 F-VKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINV 296 (514)
Q Consensus 218 ~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 296 (514)
+ +.+.+. -+-.+.+|..+-++|.-+++.+.|.+.|+..++.+. -...+|+.+.+-+.....+|+|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233333 255678999999999999999999999999988652 2688999999999999999999999999999888
Q ss_pred HHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHH
Q 046312 297 WTWSA---MILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYH 371 (514)
Q Consensus 297 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 371 (514)
..|++ +.-.|.+.++++.|+-.|++..+- .|. .+....+...+.+.|+.++|+++++++... .|. +..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHH
Confidence 77666 456799999999999999999874 454 555666777888999999999999999853 443 33333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.-+..+...++.++|+..|++++ ..|+ ...+..+...|.+.|+ .+.|..-+..+.+++|....
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~---~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN---TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc---chHHHHhhHHHhcCCCccch
Confidence 34556778899999999999997 5554 5778888899999999 99999999999999998654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=9.7e-10 Score=98.94 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=176.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 186 (514)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 356666666665554443221 1234444445555566666666666555542233444444555555555555555554
Q ss_pred hhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 187 FDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 187 ~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.+++ .+.++.......++|.+.|+|..+..++.+|.+.|+--|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 4443 33345555555555666666666666665555555433322100 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
...+++.+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+..+ .-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 122444455544444555555556666653 4566777778888888888888888888888776666222 224
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
+.+-++.+.-.+..++..+.++-.| ..+.+|...|.+.+.|.+|.+.|+... ..|+..+|+.+..++...|+ ..
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~---~~ 378 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE---PE 378 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC---hH
Confidence 5567777777777777776544444 667788888888888999988888764 78888888888888888888 88
Q ss_pred HHHHHHHHHHhc
Q 046312 420 VGNEVRRRLLEL 431 (514)
Q Consensus 420 ~a~~~~~~~~~~ 431 (514)
.|.+..+....+
T Consensus 379 ~A~~~r~e~L~~ 390 (400)
T COG3071 379 EAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=7.1e-10 Score=108.93 Aligned_cols=395 Identities=13% Similarity=0.064 Sum_probs=227.1
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc----ccHHHHHHHHHhCCCchHHHHHHHHHH
Q 046312 46 QIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP----IPWNNLIRGYAWSDRPREAVWVFIDMK 121 (514)
Q Consensus 46 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 121 (514)
.++..+...|+.|+..+|..+|.-|+ ..|+.+.|- +|.-|. .++. ..|+.++.++.+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------
Confidence 46677788888898889999998888 888888887 777664 2222 34555665555555554443
Q ss_pred HcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH-------HhC-----------------CCCCcchHHHHHHHHHcC
Q 046312 122 RRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT-------KSG-----------------LDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 122 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~-----------------~~~~~~~~~~li~~~~~~ 177 (514)
.|...||..|..+|...||+..-..+=+.|. ..| .-||.. ..+....-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 4555566666666666665543111111111 111 111111 111111222
Q ss_pred CCHHHHHHHh---------------------------------hccC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 178 RRKRDACKVF---------------------------------DDMC-ERSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 178 ~~~~~A~~~~---------------------------------~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
|-++.+.+++ .... .+++.+|.+++.+-.-.|+.+.|..++.+|++
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2222222222 2222 25788899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH------------------
Q 046312 224 LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR------------------ 285 (514)
Q Consensus 224 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~------------------ 285 (514)
.|++.+.+-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+..+|....+.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9999999888888766 7888889999999999999999998877766655544322111
Q ss_pred ------HHHHhc---------Cc-------CCHHHHHHHHHHHHHcCCh--------------------------HHHHH
Q 046312 286 ------LLFSRM---------EE-------INVWTWSAMILGLAQHGYA--------------------------EEALE 317 (514)
Q Consensus 286 ------~~~~~~---------~~-------~~~~~~~~li~~~~~~~~~--------------------------~~a~~ 317 (514)
+.++.- ++ .....|...+.... .|+- ..+.+
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 001000 00 00112221111111 1100 11222
Q ss_pred HHHHHHHCC-----------------------------CCCCHH----------------------------HHHHHHHH
Q 046312 318 LFSNMKNSS-----------------------------ISPNYV----------------------------TFLGVLCA 340 (514)
Q Consensus 318 ~~~~m~~~g-----------------------------~~p~~~----------------------------~~~~ll~~ 340 (514)
+|++....- ..||.. .-+.++..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 232222110 011110 11222222
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-----FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~ 415 (514)
|++.-+..+++..-+..... -+ ...|..||+-+....+.+.|..+.++.. ..-|..-+..+.+...+.+.
T Consensus 469 l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~- 543 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI- 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH-
Confidence 33323333333222222221 11 1457788888888888999999988885 33344556677777777777
Q ss_pred CcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 046312 416 YQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK 469 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (514)
...+..+++...+.- |.....+..+.+.....|+.+...+..+-+...|+..
T Consensus 544 --l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 544 --LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred --HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 666777777666532 2222345577777788899999999999998888865
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=8.5e-09 Score=98.13 Aligned_cols=417 Identities=12% Similarity=0.083 Sum_probs=232.1
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCC---------CCCcccHHHHHHHHHhCCCchH---HHHHHHHHHHcCCC
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVN---------DSVPIPWNNLIRGYAWSDRPRE---AVWVFIDMKRRGIK 126 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~ 126 (514)
++..-+..|..++ +.+++++|.+.+....+ +.+-..|+.+-+..+++-+.-. .-.+++.+.. .-
T Consensus 168 ~P~~~eeyie~L~--~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rf 243 (835)
T KOG2047|consen 168 APEAREEYIEYLA--KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RF 243 (835)
T ss_pred CHHHHHHHHHHHH--hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cC
Confidence 3344455555555 56666666655555431 0111234444444444322222 2222222222 22
Q ss_pred CCcc--hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC----------------------CHHH
Q 046312 127 PTEF--TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR----------------------RKRD 182 (514)
Q Consensus 127 p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~ 182 (514)
+|.. .|.+|.+.|.+.|.+++|..++++.... ..+..-|+.+.+.|+.-. +++-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 4443 5777888888888888888888877655 223333444444443211 1111
Q ss_pred HHHHhhccCCC---------------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHh
Q 046312 183 ACKVFDDMCER---------------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD------ETTMLVVLSACT 241 (514)
Q Consensus 183 A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~t~~~ll~~~~ 241 (514)
...-|+.+... ++..|..-+. +..|+..+....|.+..+. +.|- ...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 22223322111 1222222222 2245566666667666654 2222 134556666777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------------------CCHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLN---CQLGTALIDMYAKCGAVGCARLLFSRMEE---------------------INVW 297 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~ 297 (514)
..|+++.|..+|+...+...+-- ..+|-...+.-.+..+++.|..+.+.... .+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 77777777777777766543322 34555556666666677777766665431 1122
Q ss_pred HHHHHHHHHHHcCCh----------------------------------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046312 298 TWSAMILGLAQHGYA----------------------------------EEALELFSNMKNSSISPNY-VTFLGVLCACN 342 (514)
Q Consensus 298 ~~~~li~~~~~~~~~----------------------------------~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 342 (514)
.|...+...-..|-+ +++.++|++-+..=-.|+. ..|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 333333333333444 4444444433322112332 23343333222
Q ss_pred ---ccCcHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcC
Q 046312 343 ---HAGMVEDGYRYFHEMEHVHGIKPMRI--HYHTMADILARAGHLKEAYTFIMNMP--FQPN--PIVLRALLSASSIHD 413 (514)
Q Consensus 343 ---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~ 413 (514)
....++.|..+|++..+ |++|... .|......=-+.|-...|+.+++++. +++. ...|+..|.-....-
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 23468899999999997 7776632 23333333345688889999999985 4443 367888887666555
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQNL--VIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
. +...+.+++++++.-|++-.-- ...++.-.+.|..+.|..++..--+..-+...+-.| ...=.-..+
T Consensus 637 G---v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW-------~twk~FEvr 706 (835)
T KOG2047|consen 637 G---VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW-------DTWKEFEVR 706 (835)
T ss_pred C---CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH-------HHHHHHHHh
Confidence 5 6778899999999888754322 256777789999999999999877766666666677 555556788
Q ss_pred CcChH
Q 046312 492 QVELA 496 (514)
Q Consensus 492 ~~~~~ 496 (514)
||+-+
T Consensus 707 HGned 711 (835)
T KOG2047|consen 707 HGNED 711 (835)
T ss_pred cCCHH
Confidence 99844
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2e-10 Score=103.02 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=157.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667777888888888888888887664 345677778888889999999999999888753 3345667777788
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~ 418 (514)
+...|++++|...+++.............+..+...+...|++++|...+++.. ..| +...+..+...+...|+ +
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence 888999999999999988642222334567778888899999999999998875 333 46678888888999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.|...++.+.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888877777888999999999999999998887653
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.7e-11 Score=117.70 Aligned_cols=253 Identities=12% Similarity=0.133 Sum_probs=187.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN 295 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 295 (514)
.++-.+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-.....+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999999 9999999999999999999999999999887665 788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
..+|..|..+|..+|+... |+...+ -...+...+...|.-.....++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 9999999999999999876 222222 2233455566667666666777665433355566544 455
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 376 ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI-HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
...-.|-++.+++++..++..........+++-+.. ... +++-....+...+ .|+ +.+|..+..+-..+|+.+.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntp---vekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTP---VEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCch---HHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhh
Confidence 566778899999999999822111111112333332 233 5555566666666 454 6789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHH
Q 046312 455 VSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 455 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
|..++.+|+++|++-+++++| .++.| .+....+..++.-|++
T Consensus 223 Ak~ll~emke~gfpir~HyFw--------pLl~g---~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFW--------PLLLG---INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHHcCCCcccccch--------hhhhc---CccchHHHHHHHHHHH
Confidence 999999999999999999999 45555 4455555555555544
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.4e-09 Score=98.15 Aligned_cols=395 Identities=12% Similarity=0.031 Sum_probs=275.2
Q ss_pred CCCCChHHHHHHHHhcccCCCCChHHHHHHHcc--cCCCCCcccHHHHHHHHHhCCCchHHHHHHH----HHHHc-----
Q 046312 55 GLQNDAQILKELVRFCTLSSSKNLTYARSILCN--YVNDSVPIPWNNLIRGYAWSDRPREAVWVFI----DMKRR----- 123 (514)
Q Consensus 55 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~----- 123 (514)
|+.-|+...--+.+.+. -.|.++.|..++.. +. ..|..+.......+.+..++++|+.++. .+..-
T Consensus 44 ~l~~dp~d~~~~aq~l~--~~~~y~ra~~lit~~~le-~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLY--LGRQYERAAHLITTYKLE-KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHH--hhhHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 34455555555667666 57888888877764 44 6777888888888889999999999987 22110
Q ss_pred ----CCCCCcch----HHHHH-------HHHhccCCchHHHHHHHHHHHhCCCCCcchHHH---HHHHHHcC--------
Q 046312 124 ----GIKPTEFT----YPFVL-------KACAEISGLNEGMQVQANVTKSGLDSDVYTNNN---LVRFYGSC-------- 177 (514)
Q Consensus 124 ----~~~p~~~~----~~~ll-------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~-------- 177 (514)
-+.+|..- -+.-. ..|....+.++|...+.+.... |...+.+ ++....-.
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 01111111 11111 2333445666676666665533 2222222 22211111
Q ss_pred ---------C-CHHHHHHHhhcc--------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 046312 178 ---------R-RKRDACKVFDDM--------------------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE 227 (514)
Q Consensus 178 ---------~-~~~~A~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 227 (514)
+ +.+.-+.+|+-. .+.++.....-..-+...+++.+..++.+...+.. +
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p 275 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-P 275 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C
Confidence 0 111112222211 01133344444556777899999999999988863 5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHH
Q 046312 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMIL 304 (514)
Q Consensus 228 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~ 304 (514)
+....+..-|.++...|+...-..+=..+++.- +....+|-++.-.|.-.|+..+|++.|.+....| ...|-.+..
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 555566666668888898888777777777764 4467888999999999999999999999887644 468999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHL 383 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 383 (514)
.|+-.|..|+|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++.|+ +...+-+.-.....+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhh
Confidence 999999999999999887763 11111112223345778899999999999997 44554 66777777767778899
Q ss_pred HHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 384 KEAYTFIMNMP--------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 384 ~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
.+|..+|+... .++ ...+++.|..+|.+.+. +++|...++++..+.|.++.++.+++-+|...|+.+.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 99999997763 112 45678999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 046312 455 VSNVRRFMKNV 465 (514)
Q Consensus 455 A~~~~~~m~~~ 465 (514)
|.+.|.+....
T Consensus 508 Aid~fhKaL~l 518 (611)
T KOG1173|consen 508 AIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHhc
Confidence 99999987643
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=9.3e-10 Score=106.05 Aligned_cols=230 Identities=14% Similarity=0.082 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCc----------
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIER-----G-TVLNC-QLGTALIDMYAKCGAVGCARLLFSRMEE---------- 293 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 293 (514)
.++..+...|...|+++.|..++++.++. | ..|.. ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666777888888888888888777654 2 11222 2234466788888999999888888763
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--C
Q 046312 294 I-NVWTWSAMILGLAQHGYAEEALELFSNMKN-----SSIS-PNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--I 363 (514)
Q Consensus 294 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 363 (514)
| -..+++.|..+|.+.|++++|..++++..+ .|.. |.. ..++.+...|+..+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 235677778889999999988888877654 1222 222 2366677788899999999999887766432 2
Q ss_pred CCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 364 KPM----RIHYHTMADILARAGHLKEAYTFIMNMP---------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 364 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
.++ ..+++.|...|.+.|++++|.++++++. ..+ ....++.+...|...+. ++.|.+.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~---~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK---YEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc---cchHHHHHHHHH
Confidence 232 3578899999999999999999998883 122 24667888889988888 888888877765
Q ss_pred h----cCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 430 E----LEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 430 ~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
. .+|+.+ .+|..|+.+|.+.|+++.|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 345554 457799999999999999999988875
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.6e-12 Score=81.42 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=44.5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999988874
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=9e-09 Score=94.96 Aligned_cols=348 Identities=9% Similarity=-0.023 Sum_probs=234.9
Q ss_pred CCCChHHHHHHHcccCC-CCC-cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHH-
Q 046312 74 SSKNLTYARSILCNYVN-DSV-PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGM- 149 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~- 149 (514)
++|.+++|+..+.+... .|+ ++-|...-.+|...|+|+++.+--.+..+ +.|+-. .+..-..++-..|++++|+
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 68999999999988754 566 77788888888888999888776666555 344432 3444444555555555443
Q ss_pred ---------------------HHHHHH--------HH-hC--CCCCcchHHHHHHHHHcC--------C-----------
Q 046312 150 ---------------------QVQANV--------TK-SG--LDSDVYTNNNLVRFYGSC--------R----------- 178 (514)
Q Consensus 150 ---------------------~~~~~~--------~~-~~--~~~~~~~~~~li~~~~~~--------~----------- 178 (514)
+++.+. .+ .+ +-|+.....+....+... +
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 222211 11 11 123322222222222110 0
Q ss_pred ---------CHHHHHHHhhcc-----CCC-----Chh------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 046312 179 ---------RKRDACKVFDDM-----CER-----SVV------SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTM 233 (514)
Q Consensus 179 ---------~~~~A~~~~~~~-----~~~-----~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 233 (514)
.+.+|...+.+- ..+ |.. +.......+.-.|+.-+|..-|+..++....++. .|
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-ly 363 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LY 363 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HH
Confidence 111121111111 000 111 1111112234468889999999999887533333 37
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcC
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHG 310 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 310 (514)
..+...|....+.++..+.|....+.+.. |+.+|..-...+.-.+++++|..-|++.... +...|-.+.-+..+.+
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 77888899999999999999999988743 7888888888899999999999999998874 4456666666677889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-------hH--HHHHHHHHHHhcC
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-------RI--HYHTMADILARAG 381 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~--~~~~li~~~~~~g 381 (514)
++++++..|++.++. ++-....|+.....+...++++.|.+.|+...+- .|+ .. +-..++. +.-.+
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~-~qwk~ 517 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLV-LQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhh-hchhh
Confidence 999999999999885 5556788999999999999999999999998853 444 11 1112222 22348
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 382 HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
++..|..++++.. +.| ....|..|...-...|+ .++|.+++++...+-.
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLAR 568 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 9999999999986 445 45789999999999999 9999999998877643
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.8e-08 Score=88.37 Aligned_cols=364 Identities=10% Similarity=-0.015 Sum_probs=239.6
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccH-HHHHHHHHhCCC--chH-------------HHHHHHHHHHcC-
Q 046312 62 ILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPW-NNLIRGYAWSDR--PRE-------------AVWVFIDMKRRG- 124 (514)
Q Consensus 62 ~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~--~~~-------------a~~~~~~m~~~~- 124 (514)
.-...+..|. ..++-+.|..++.+.+ ..-...- |.++..+.+.|. .++ |++.+.-..+.+
T Consensus 99 ~~r~~aecy~--~~~n~~~Ai~~l~~~p-~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 99 QRRRAAECYR--QIGNTDMAIETLLQVP-PTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHH--HHccchHHHHHHhcCC-ccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344555666 6777788888877776 3322333 344443433331 122 222222222222
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCCchHHHHHHHHHHHhC-CCCCcchHHHHHHHHHcCCCHHHHHHHh
Q 046312 125 --------------IKPTEFTYPFVLKACAE--ISGLNEGMQVQANVTKSG-LDSDVYTNNNLVRFYGSCRRKRDACKVF 187 (514)
Q Consensus 125 --------------~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~ 187 (514)
++|+..+....+.+++. .++-..|.+++-.+.... ++.|......+...+...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 23344444444554433 345555555555554443 4556777888889999999999999999
Q ss_pred hccCCCChhhH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 046312 188 DDMCERSVVSW---NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264 (514)
Q Consensus 188 ~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 264 (514)
++...-|+.+. ....-.+.+.|+++....+...+.... .-+...|..-...+...++++.|..+-+..++.+. -+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-cc
Confidence 88744333322 222333557788888887777766532 23333444444445567788888888877776542 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL-CA 340 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~ 340 (514)
...+-.-...+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+-++..+. +.-+..+...+. ..
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 44555555677888999999999987664 36789999999999999999998888776653 344555555442 22
Q ss_pred H-hccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 341 C-NHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 341 ~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
| .....-++|.+++++.. .+.|+ ....+.+...+...|+.+++..++++.. ..||....+.|...+...+.
T Consensus 413 ~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne--- 486 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE--- 486 (564)
T ss_pred eccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh---
Confidence 2 23344578888888876 44776 4456677788888999999999998876 78899999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCc
Q 046312 418 DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (514)
++++.+.+..+.+++|++..
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998653
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.4e-11 Score=79.86 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888874
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.6e-09 Score=106.87 Aligned_cols=258 Identities=10% Similarity=-0.038 Sum_probs=167.7
Q ss_pred CCcchHHHHHHHHhc-----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH---------cCCCHHHHHHHhhccCC
Q 046312 127 PTEFTYPFVLKACAE-----ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG---------SCRRKRDACKVFDDMCE 192 (514)
Q Consensus 127 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~ 192 (514)
.+...|...+++... .++.++|...+++..+.. +-+...|..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344445555544321 234578888888887663 223445555554443 23457888888888733
Q ss_pred ---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 193 ---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 193 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 356677777778888889999999998888764 334566777788888889999999999888887644 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCACNHA 344 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~ 344 (514)
.++..+...|++++|...+++..+ | +...+..+..++...|+.++|...+.++... .|+..+ .+.+...|+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 344456667888989888887653 3 3455677777888899999999998887653 444333 44444566666
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
| +.|...++.+.+.....+....+ +-..|.-.|+.+.+..+ +++.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 6 47777777766643333433333 33335556776666665 6664
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=1.9e-09 Score=96.56 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555666666666666666666665532 2233455555666666666666666666666553 22344455555556
Q ss_pred HcCCCHHHHHHHhhccCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 175 GSCRRKRDACKVFDDMCE-----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
...|++++|.+.+++... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666555522 122334444555555555666655555555432 22233444455555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 288 (514)
...+++..+.. +.+...+..+...+...|+.++|..+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55555554441 223333333444444444444444443
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-07 Score=92.65 Aligned_cols=404 Identities=13% Similarity=0.067 Sum_probs=268.1
Q ss_pred HHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 046312 49 AQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIK 126 (514)
Q Consensus 49 ~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 126 (514)
..+....+.-|+.+|..|.-+.. .+|+++.+-+.|++... ......|+.+-..+...|.-..|+.+++.-....-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~--~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALS--RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444557789999999999988 99999999999998751 223356888888899999999999999886554323
Q ss_pred C-CcchHHHHHHHHh-ccCCchHHHHHHHHHHHh--CC--CCCcchHHHHHHHHHcC-----------CCHHHHHHHhhc
Q 046312 127 P-TEFTYPFVLKACA-EISGLNEGMQVQANVTKS--GL--DSDVYTNNNLVRFYGSC-----------RRKRDACKVFDD 189 (514)
Q Consensus 127 p-~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~ 189 (514)
| |...+...-+.|. +.+..++++.+-.++... +. ......|..+.-+|... ....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3444544445554 457788888877777662 11 22344555555555432 112456777777
Q ss_pred cCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 046312 190 MCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 190 ~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 266 (514)
..+. |..+--.+.--|+..++.+.|+...++..+-+-.-+...+..+.-.+...+++.+|+.+.+.....-.. |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 7332 333322333346778899999999999999866778889999998999999999999998877654211 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--------------------------------CCHHHHHHHHHHHHHcC---C
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--------------------------------INVWTWSAMILGLAQHG---Y 311 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~li~~~~~~~---~ 311 (514)
....-++.-...++.+++..+...+.. ..+.++..+.......+ .
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 111112222234555555443333221 01112222211111100 0
Q ss_pred hHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH
Q 046312 312 AEEALELFSNMKNSSISP--N------YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL 383 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 383 (514)
.+.. +...-+.| + ...|......+.+.+..++|...+.+.... ..-....|......+...|++
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhh
Confidence 0100 11111222 2 223445556778888999998888887742 233466777777888899999
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 384 KEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNE--VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++|.+.|.... +.|+ +.+..++...+...|+ -..+.. ++..+.+++|.++.+|..|+..+.+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999998886 6665 5778889999999997 666666 999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 046312 460 RFMKNVG 466 (514)
Q Consensus 460 ~~m~~~~ 466 (514)
+...+..
T Consensus 778 ~aa~qLe 784 (799)
T KOG4162|consen 778 QAALQLE 784 (799)
T ss_pred HHHHhhc
Confidence 9887544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=9.2e-09 Score=103.91 Aligned_cols=257 Identities=15% Similarity=0.031 Sum_probs=180.5
Q ss_pred ChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 046312 194 SVVSWNVIITVCVE-----NLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACT---------ELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 194 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~ 258 (514)
+...|...+++... .+.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 23467999999999876 454 445555544433 23458899999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTF 334 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 334 (514)
.+.. +...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+. ..+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 8633 677888888899999999999999999875 4 4567888889999999999999999999985 3442 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHHHHh
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIV-LRALLSASSI 411 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~ 411 (514)
..++..+...|++++|...++++.+. ..|+ ...+..+..++...|+.++|...+.++. ..|+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998764 2343 4456778888999999999999999876 4555443 3444445555
Q ss_pred cCCCCcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.|+ .+...++.+.+.. +.++ ..+...|.-.|+.+.+... +++.+.+
T Consensus 488 ~g~-----~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE-----RALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH-----HHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 543 4666566655533 4433 2366666667777776666 8777654
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.8e-09 Score=94.44 Aligned_cols=224 Identities=13% Similarity=-0.013 Sum_probs=130.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHH-HHHHHHHHHHcCCh
Q 046312 236 VLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWT-WSAMILGLAQHGYA 312 (514)
Q Consensus 236 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~ 312 (514)
+.++|.+.|.+.+|.+.++.-++.. |-+.||..|.+.|.+..+++.|+.+|.+..+ |..+| ..-+...+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3344444444444444444333332 2233333444444444444444444444433 22222 22233444555566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 313 EEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
++|.++|++..+.. ..+......+...|.-.++.+.|..+|+++.+. |+ -+...|+.+.-+|.-.+++|-++.-|.+
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666655532 233344444445555556666666666666654 43 2344555566666666666666666655
Q ss_pred CC---CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 393 MP---FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 393 ~~---~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.. ..|+ ...|-.|.......|| +..|.+.++.+...++++..+++.|+..-.+.|+.++|..+++.......
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 53 2233 3456566666777888 88888889988888888888899999989999999999999988876554
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=1.3e-06 Score=83.72 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=247.0
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN----DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFV 135 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 135 (514)
+.+|-..++... +.|++...+..|++... ......|...+......|-++-++.+|++..+- ++..-.--
T Consensus 102 pRIwl~Ylq~l~--~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLI--KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHH--hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 355666666666 78888888888876531 222345888888888888888999999888663 33346666
Q ss_pred HHHHhccCCchHHHHHHHHHHHhC------CCCCcchHHHHHHHHHcCCCHH---HHHHHhhccCCC----ChhhHHHHH
Q 046312 136 LKACAEISGLNEGMQVQANVTKSG------LDSDVYTNNNLVRFYGSCRRKR---DACKVFDDMCER----SVVSWNVII 202 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~----~~~~~~~li 202 (514)
+..++..+++++|.+.+...+... .+.+...|..+.+..++.-+.- ....+++.+..+ =...|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 778888899999888887765321 1334455555555554443221 233344444221 234677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----------------------------------------
Q 046312 203 TVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE---------------------------------------- 242 (514)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---------------------------------------- 242 (514)
+-|.+.|.+++|..+|++.... ..+..-|+.+.++|++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 7777777777777777776543 1222222222222211
Q ss_pred --------------------------cCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 243 --------------------------LGNLSLGKWVHLQLIERGTVL------NCQLGTALIDMYAKCGAVGCARLLFSR 290 (514)
Q Consensus 243 --------------------------~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (514)
.|+..+....+.++++. +.| -...+-.+.+.|-..|+++.|..+|++
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222333333333332 111 123566778888999999999999999
Q ss_pred cCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC------HHHHHHHHHHHhccCc
Q 046312 291 MEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-----------SPN------YVTFLGVLCACNHAGM 346 (514)
Q Consensus 291 ~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~------~~~~~~ll~~~~~~~~ 346 (514)
..+.+ ..+|..-...-.++.+++.|+.++++.....- ++. ...|...+..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 88732 24566666667788889999998887754211 111 2233444444455678
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-CCH-HHHHHHHHHHHhcCCCCcchHHH
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQ-PNP-IVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-p~~-~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
++....+|+.+.+-.-..|.... | ....+-...-++++.+++++-. ++ |+. ..|+..+..+.+.-.+...+.++
T Consensus 493 festk~vYdriidLriaTPqii~-N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII-N-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH-H-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888899998875333444221 1 2222445666899999999875 33 443 67888777776654455699999
Q ss_pred HHHHHHHhcCCCCC--chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 423 EVRRRLLELEPRGS--QNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 423 ~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+++++.+.-|... ..|...+..-.+-|....|++++++..
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999776322 245566666677899999999999864
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.4e-07 Score=88.75 Aligned_cols=419 Identities=11% Similarity=0.036 Sum_probs=271.1
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCCchHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-FTYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 150 (514)
..|+.++|......-.. ..+.+.|..+.-.+....++++|++.|...... .||. ..|.-+.-.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 57999999998887652 344577888888888889999999999998875 4544 456666556678899999988
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC-----CCChhhHHHH------HHHHHhCCChhHHHHHHH
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC-----ERSVVSWNVI------ITVCVENLWLGEAVGYFV 219 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l------i~~~~~~~~~~~a~~~~~ 219 (514)
...++.+.. +-....|..+.-++.-.|+...|..++++.. .++...|... .....+.|.++.|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888887763 3345677888888888999999999887772 2444433322 234567788888888876
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCc--CC
Q 046312 220 KMKDLGFEPDETTM-LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR-LLFSRMEE--IN 295 (514)
Q Consensus 220 ~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~~ 295 (514)
.-... ..|...+ .+-...+.+.+++++|..++..++..++ -+...|..+..++.+-.+.-++. .+|....+ |.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 65432 2233333 3345567788999999999999998862 24445555555665333333333 66665543 11
Q ss_pred HHHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-C-----------
Q 046312 296 VWTWSAMILGLAQ-HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-G----------- 362 (514)
Q Consensus 296 ~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~----------- 362 (514)
...-..+--.... ..-.+..-.++..+.+.|+++-...+.++ |-.....+-..++.-.+.... |
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111011111 22234556677777888876544443333 222221111111111111100 1
Q ss_pred -CCCchHHHH--HHHHHHHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 363 -IKPMRIHYH--TMADILARAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 363 -~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
-+|....|. .++..+-+.|+++.|...++... ..|+. ..|..=...+...|+ ++.|...++.+.+++..|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhccchhHH
Confidence 145555444 56778889999999999999886 45553 445455577889999 99999999999999866553
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CCceeEEEECCeEEEE--EecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK-----MKGMSWVELGGSIHRF--YSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.-..-+.-..++++.++|.++.....+.|... ...+.| ..+ ..+|.+.+++..|+.-+..+-++.+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW-------f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW-------FQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH-------HhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33367788889999999999999998776522 234667 233 2458888888888887777776654
Q ss_pred h
Q 046312 511 V 511 (514)
Q Consensus 511 ~ 511 (514)
+
T Consensus 514 ~ 514 (700)
T KOG1156|consen 514 T 514 (700)
T ss_pred H
Confidence 3
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1e-08 Score=100.17 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-------------CCCCchH--HHHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-------------GIKPMRI--HYHTMADILA 378 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~ 378 (514)
.+..++..+...|+++ +|..+-..|......+-...++....... .-.|+.. ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3555666777777544 34444444555555555555555554321 1124443 3455677788
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
..|++++|++.+++.. ..|+ +..|..-...+.+.|+ +.+|.+.++.+.++++.|-..-...+..+.++|+.++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999875 5665 6778888888999999 999999999999999988766668888999999999999
Q ss_pred HHHHHHHhCCCCCCC-----ceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 457 NVRRFMKNVGLKKMK-----GMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 457 ~~~~~m~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
+++....+.+..+.. .+.|. ......+|.+.|++..|+..+..+..++.+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf-----~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWF-----ETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999877764332 35561 012245789999999999999888877653
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.9e-08 Score=92.49 Aligned_cols=267 Identities=12% Similarity=0.038 Sum_probs=181.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
.+-+...+++.+..++++...+. .+++...+..-|.++...|+..+-.-+=.++++.- |..+.+|-++.--|...|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 34556678888888888887775 36666667777778888888887777777777663 55677888888888888888
Q ss_pred HHHHHHhhccCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 181 RDACKVFDDMCERS---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 181 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.+|++.|.+...-| ...|-.....|.-.|..+.|+..|...-+. ++....-+..+---|.+.++++.|.++|.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888888774333 357888888888888888888877776553 12122223334445667788888888888877
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 258 ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---------I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 258 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
... +.|+.+.+-+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..+++.+.. .
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~ 485 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-S 485 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-C
Confidence 654 33666777777777777788888877776552 0 2234666666777777777777777776654 2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 328 SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 328 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+-+..++.++.-.|...|+++.|...|.+.. .+.|+-.+-..++.
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 4456666666666667777777777776665 55666555554444
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=4.4e-09 Score=92.06 Aligned_cols=256 Identities=10% Similarity=-0.010 Sum_probs=208.5
Q ss_pred HHHcCCCHHHHHHHhhcc-----CCC--------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 173 FYGSCRRKRDACKVFDDM-----CER--------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~-----~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
.|...+|+..|..+.... ..+ |=..-+.+..+|.+.|.+.+|.+.|+...+. .|-+.||..|-+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHH
Confidence 345667777776544333 111 1122357889999999999999999998887 6777899999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
|.+..++..|..++.+-++.- +-++....-+.+.+-..++.++|.++|+...+ .++.....+...|.-.++.+-|+
T Consensus 266 Y~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 999999999999999988764 33555556777889999999999999999876 46777777888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+|+++++.|+ -+...|+.+.-+|.-.+++|-++.-|++.... .-.|+ ..+|..+.....-.|++..|.+.|+-..
T Consensus 345 ryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 345 RYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 99999999985 45677888888888999999999999998874 44455 5578888888888999999999998876
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 395 --FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 395 --~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
..-....++.|.-.-.+.|+ ++.|+..+..+....|+-.
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhCcccc
Confidence 33356889999888899999 9999999999999988743
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.2e-06 Score=81.43 Aligned_cols=403 Identities=12% Similarity=0.088 Sum_probs=223.6
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHH--HhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGY--AWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~ 116 (514)
++.+.+.+..+.+...+ +-+...+..=+-+.. +.+.+++|+.+.+.-. .......-.+=.+| .+.+..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValI--q~~ky~~ALk~ikk~~-~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALI--QLDKYEDALKLIKKNG-ALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhh--hhhHHHHHHHHHHhcc-hhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 34555556666666655 444556666666666 7899999997776644 21221111123333 367888888888
Q ss_pred HHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-CcchHHHHHHHHHcCCCHHHHHHHhhccCCCC
Q 046312 117 FIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDS-DVYTNNNLVRFYGSCRRKRDACKVFDDMCERS 194 (514)
Q Consensus 117 ~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 194 (514)
++ |..++.. +...-...|-+.|++++|..+|+.+.+++.+- +...-..++.+ +-.-.+. +.+..+...
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVP 171 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCC
Confidence 87 3333333 55555677888899999999999887765321 11111111111 1111111 233332222
Q ss_pred hhhHHH---HHHHHHhCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 195 VVSWNV---IITVCVENLWLGEAVGYFVKMKDLG-------------FEPDET-TMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 195 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
..+|.. ....++..|++.+|+++++.....+ +.-+.. .-..+...+-..|+-++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 223322 2334556677777777776662211 000001 11123334455677777777777666
Q ss_pred HhCCCCch----hHHHHHHHHH---------------------------------------------HhcCCHHHHHHHH
Q 046312 258 ERGTVLNC----QLGTALIDMY---------------------------------------------AKCGAVGCARLLF 288 (514)
Q Consensus 258 ~~~~~~~~----~~~~~li~~~---------------------------------------------~~~g~~~~A~~~~ 288 (514)
+.... |. ...|.|+.+- .-.+..+.+.++.
T Consensus 252 ~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 65432 21 1111111110 0112222222222
Q ss_pred HhcCcC-CHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HH
Q 046312 289 SRMEEI-NVWTWSAMILGL--AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH--------EM 357 (514)
Q Consensus 289 ~~~~~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~ 357 (514)
...... ....+..++... ++.....++.+++...-+....-........+......|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 222221 122333343332 2223466777777766654222224455566677888999999999999 55
Q ss_pred HHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 358 EHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 358 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
.+. +-.|. +...+...+.+.++.+.|..++.+.. .++. ..++.-+...-.++|+ .++|...++.+
T Consensus 411 ~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel 484 (652)
T KOG2376|consen 411 LEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN---EEEASSLLEEL 484 (652)
T ss_pred hhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHH
Confidence 543 44454 44456677888888777777776663 2221 1333444444567788 99999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 429 LELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 999999999999999999988 5788888776653
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.4e-08 Score=93.95 Aligned_cols=189 Identities=15% Similarity=0.052 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 342 (514)
.|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344444555555555555555555443 23455555555666666666666666665542 333 344444555555
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchH
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
..|++++|.+.++...+. .|+..........+...++.++|.+.|++.. ..|+...+ .......|+ ...
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~---~~~ 214 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGK---ISE 214 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccC---CCH
Confidence 556666666666665543 3332211111112233455666666664432 12221111 112222333 322
Q ss_pred HHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 421 GNEVRRRLL-------ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 421 a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+ +.++.+. ++.|+.+.+|..++.++.+.|++++|...|++..+.++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 2333332 23344445566666666666666666666666655443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=2e-07 Score=91.28 Aligned_cols=126 Identities=15% Similarity=0.031 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
++..+...|...|++++|..++++..+. .|+ +..|..-.+.|-+.|++++|.+.++.+. ..-|..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3455567788899999999999988864 676 7788888888999999999999998886 445667777778888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCc-------h--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQ-------N--LVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+.|+ +++|.+.+..+.+-+-+... . ....+.+|.+.|++..|.+.|..+..
T Consensus 273 LRa~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 89999 99999999988765521111 1 23678999999999999988877654
No 75
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.5e-08 Score=84.23 Aligned_cols=387 Identities=11% Similarity=-0.007 Sum_probs=241.9
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH-HH
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDS---VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF-VL 136 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll 136 (514)
--+.+.+..+. +..++++|.+++.... .. +......|...|....++..|-+.|+++-.. .|...-|.. -.
T Consensus 11 Geftaviy~lI--~d~ry~DaI~~l~s~~-Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 11 GEFTAVVYRLI--RDARYADAIQLLGSEL-ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CchHHHHHHHH--HHhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33555666666 7888999999988765 33 3455667777888889999999999998774 454444432 24
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhccC-CCChhhHHHHHHHHHhCCChhH
Q 046312 137 KACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDMC-ERSVVSWNVIITVCVENLWLGE 213 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 213 (514)
..+-+.+.+..|+.+...|.+. ++... ...-.......+++..+..+.++.+ +.+..+.+.......+.|+++.
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 5566788899999998877643 22111 1111123456789999999999997 4667777777777789999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------ch---------------
Q 046312 214 AVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-------------NC--------------- 265 (514)
Q Consensus 214 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------------- 265 (514)
|++-|+...+-+.--....|+..+.. .+.|+.+.|.+...+++++|+.. |.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999998886444445667666644 46789999999999998887532 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
..+|.-...+.+.|+++.|.+.+..|.. .|++|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 1122223345688999999999999874 4666655443222 23445555555555555432 456788889989
Q ss_pred HhccCcHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGI-KPMRIHYHTMADILAR-AGHLKEAYTFIMNMPFQPNPIVLRALL--SASSIHDAKY 416 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~ 416 (514)
||+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+...-....-...+ .--...++
T Consensus 320 yCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d-- 395 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD-- 395 (459)
T ss_pred HhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 99998888888777653321 11 12333344 3444443 345677776665553000011111111 11122222
Q ss_pred cchHHHHHHH---HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 417 QDGVGNEVRR---RLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 417 ~~~~a~~~~~---~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
-...+.+++ ...++- ..+...-++.|.+..++..+.++|+.-.+..
T Consensus 396 -d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 396 -DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 122222222 222221 2245677888999999999999999876543
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=5.4e-08 Score=94.06 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=101.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCc-hh
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDL-----G-FEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIER-----GT-VLN-CQ 266 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~ 266 (514)
+...|...+++++|..+|+++... | ..|. ..++..|..+|.+.|++++|...++...+- |. .+. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334445555555555555554331 1 1111 123444444555555555555444443321 11 111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--------CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CC
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--------IN---VWTWSAMILGLAQHGYAEEALELFSNMKNS----SI--SP 329 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p 329 (514)
.++.+...++..+++++|..++....+ .+ ..+++.|...|...|++++|.+++++.+.. +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 334444555555666666555554332 11 246667777777777777777777776542 11 12
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHH---hhCC-CCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 330 N-YVTFLGVLCACNHAGMVEDGYRYFHEMEH---VHGI-KPM-RIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 330 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
. ...++.+...|.+.+....|.++|.+... .+|. .|+ ..+|..|...|.+.|+++.|.++.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 34466667777777777777666665432 1222 233 446777778888888888887777665
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=4.4e-06 Score=80.34 Aligned_cols=413 Identities=10% Similarity=-0.028 Sum_probs=257.6
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 116 (514)
++.+++....+.-.+ +-..+.+.|+.+--.+. ...++++|.+.+..... +.|...|.-+--.=++.|+++.....
T Consensus 55 g~~~ea~~~vr~glr-~d~~S~vCwHv~gl~~R--~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLR-NDLKSHVCWHVLGLLQR--SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cchHHHHHHHHHHhc-cCcccchhHHHHHHHHh--hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455555444443333 22334577887777777 88899999999987642 33445555554444567888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCC-CCCcchHHHHH------HHHHcCCCHHHHHHHhhc
Q 046312 117 FIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGL-DSDVYTNNNLV------RFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 117 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li------~~~~~~~~~~~A~~~~~~ 189 (514)
.....+. .+-....|..+..+.--.|+...|..++++..+.-. .|+...+.... ....+.|.+++|.+.+..
T Consensus 132 r~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 8877775 223345688888888889999999999999887652 45665554333 345677888999888876
Q ss_pred cCCC--Chhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCC-hHHHHHHHHHHHHhCCCCc
Q 046312 190 MCER--SVVS-WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS-ACTELGN-LSLGKWVHLQLIERGTVLN 264 (514)
Q Consensus 190 ~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~-~~~a~~~~~~~~~~~~~~~ 264 (514)
..+. |-.. -.+-...+.+.++.++|..++..+... .||..-|...+. ++.+..+ .+....+|....+.-..-.
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 6332 2222 234456788999999999999999987 577666655544 4433333 3333356655544311100
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CC----------CCC
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKN----SS----------ISP 329 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g----------~~p 329 (514)
.... .=+.......-.+..-.++..+.+ .-+.++..+...|-.-...+-..++...+.. .| -+|
T Consensus 289 ~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 289 CPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred cchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 0000 001111111112222233333322 2233444444444333322222222222221 11 144
Q ss_pred CHHH--HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 046312 330 NYVT--FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRA 404 (514)
Q Consensus 330 ~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 404 (514)
.... +..++..+-..|+++.|..+++.... -.|+ +..|..-.+.+...|++++|..++++.. ..||..+-.-
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 4443 44566788899999999999999985 3777 5677777888999999999999999986 6677766666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc-------hHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ-------NLV--IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
-..-..+.++ .++|.+++.++.+-+-+... .|. .=+.+|.+.|++..|.+=|..+..
T Consensus 445 cAKYmLrAn~---i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 445 CAKYMLRANE---IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHccc---cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6677778888 99999999999876642111 122 347788899888888876666543
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=2.9e-08 Score=83.09 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 376 (514)
+...|.-+|...|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|++... +.|+ ..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34445666777777777777777777742 23355677777777777888888777777774 2443 5667777777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 377 LARAGHLKEAYTFIMNMPFQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
+|..|++++|...|++....|+ ..+|..+.-+..+.|+ .+.++..+++..+.+|+.+.....+.....+.|++
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 7777888888888877753332 4666677777777777 77788888888888887777777888888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 046312 453 EKVSNVRRFMKNVGL 467 (514)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (514)
-.|..+++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888877776655
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.9e-06 Score=72.90 Aligned_cols=406 Identities=11% Similarity=0.031 Sum_probs=239.1
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 116 (514)
.+...+..+.+.-...+-.- ....+..|..|. .+.|++++|...+..+.+ .++...|-.|...+.-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~EE-E~~~~lWia~C~-fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREE-EDSLQLWIAHCY-FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhh-hHHHHHHHHHHH-HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 45566666666554333221 224444454443 388999999988887653 34445566666666666788888777
Q ss_pred HHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C
Q 046312 117 FIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R 193 (514)
Q Consensus 117 ~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~ 193 (514)
-.+. |+.. .-..++...-+.++-++-..+.+.+.+. ..-..+|.+.....-.+++|.+++.++.. |
T Consensus 114 ~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 114 AEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 5543 3333 3344455556677777777666665432 13334455665666688999999998844 3
Q ss_pred ChhhHHHH-HHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc--cCChHHH------------HHHHHHHH
Q 046312 194 SVVSWNVI-ITVCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTE--LGNLSLG------------KWVHLQLI 257 (514)
Q Consensus 194 ~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~--~g~~~~a------------~~~~~~~~ 257 (514)
+-...|.. .-+|.+..-++-+.++++-.... .||. ...+.......+ .|+..+. ....+.+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 44444543 34677778888888888777665 3443 333333222222 1221111 11222222
Q ss_pred HhCC------------CC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-------ChH
Q 046312 258 ERGT------------VL-----NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG-------YAE 313 (514)
Q Consensus 258 ~~~~------------~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~ 313 (514)
++++ -| -+..-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..| ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 2211 01 11222345556889999999999998887655444432222233333 344
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 314 EALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
-|.+.|+-.-+++..-|.. .-..+..++.-..++++++.+++.+..- =..-|...| .+..+++..|.+.+|.++|-+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhh
Confidence 5666665554444333321 2334445555567788899988888763 233334333 478899999999999999988
Q ss_pred CC--CCCCHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHhcCCC-CCc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 393 MP--FQPNPIVLRALL-SASSIHDAKYQDGVGNEVRRRLLELEPR-GSQ-NLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 393 ~~--~~p~~~~~~~l~-~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+. ...|..+|.+++ .+|.+++. -+-+++.+.+.+.. +.. .....++-|.+++.+--|-+.|+.+...+.
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkk------P~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKK------PQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCC------chHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 86 223556665554 55667777 55666777776633 222 233667888999999999999998876544
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=3.4e-07 Score=84.72 Aligned_cols=187 Identities=10% Similarity=-0.120 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhC
Q 046312 132 YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVEN 208 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 208 (514)
|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+ | +..+|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444445555566666666666555543 23445555566666666666666665555522 2 334555555555666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH--HH
Q 046312 209 LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA--RL 286 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~ 286 (514)
|++++|++.|++..+. .|+..........+...++.++|...+....... .++... ..+.. ...|+...+ .+
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~--~~lg~~~~~~~~~ 219 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVE--FYLGKISEETLME 219 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHH--HHccCCCHHHHHH
Confidence 6666666666665554 2322211111112233455666666654433222 111111 11222 222333222 21
Q ss_pred HHHhcCc-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 287 LFSRMEE-------INVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 287 ~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.+....+ .....|..+...+.+.|++++|...|++..+.
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111111 12345666667777777777777777777654
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-06 Score=85.77 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.....+.+.++.++|...+.+.. ..-....|......+...|. .++|.+.+..+..++|+++....+++.++.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~---~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ---LEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh---hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34445556666666665555554 22234455555556667777 89999999999999999999999999999999
Q ss_pred CCHHHHHH--HHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 450 GMWEKVSN--VRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 450 g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
|+..-|.. ++..+.+. +|..+-.| +.+..-+...|+.++|.+.|.--.
T Consensus 732 G~~~la~~~~~L~dalr~--dp~n~eaW-------~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRL--DPLNHEAW-------YYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred CCcchHHHHHHHHHHHhh--CCCCHHHH-------HHHHHHHHHccchHHHHHHHHHHH
Confidence 99888877 88888774 46677778 677777899999999999887543
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=2.3e-07 Score=82.07 Aligned_cols=241 Identities=13% Similarity=0.039 Sum_probs=121.9
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---cCCHHHHHHHHHHHHHcCChHHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME---EINVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 315 (514)
.+...|+...|+.....+++.. +.+...|..-..+|...|++..|+.-++... ..+...+..+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666666554 3356666666666667777666665554443 34555555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHH
Q 046312 316 LELFSNMKNSSISPNYVT----FLGV---------LCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADIL 377 (514)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 377 (514)
+...++-++ +.||... |..+ +....+.++|.++..-.+...+. .|. ...+..+-.++
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 666666654 3454322 1110 01112233444444444444332 222 11122333334
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKV 455 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (514)
...|++.+|++.-.++. +.|| +.++.--..+|..-.. ++.|..-++.+.+.++++..+-.. .+.|
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~sn~~~reG----------le~A 384 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNESNTRAREG----------LERA 384 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcccHHHHHH----------HHHH
Confidence 44455555555544443 3332 4444444445554444 555555555555555544321111 2223
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhhcCC
Q 046312 456 SNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514 (514)
Q Consensus 456 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 514 (514)
.++.++...+. +.-|.|-.++-...++.+-|.+|...+.-.+|
T Consensus 385 krlkkqs~kRD----------------YYKILGVkRnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 385 KRLKKQSGKRD----------------YYKILGVKRNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred HHHHHHhccch----------------HHHHhhhcccccHHHHHHHHHHHHHhcCCccc
Confidence 33322222221 24456777888888899999999888765554
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=2.1e-07 Score=90.09 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=120.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHH
Q 046312 237 LSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 237 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
+.+....+.|.+|..+++.+..... -..-|..+.+-|+..|+++.|+++|.+.- .++-.|..|.+.|+|+.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3444555667777777766665532 23345566667777777777777776543 3445566677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 396 (514)
++-.+.. |.......|-+-..-..+.|++.+|.++|-.+. .|+. -|.+|-+.|..+..+.+.++-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 6665443 333334445555555666677777766654432 3432 355666777777777666665411
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeE
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSW 475 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (514)
--..|...+..-+-..|+ +..|++-+-++ .-|.+-+++|...+.|++|.++-+.--..+..+...+.|
T Consensus 880 ~l~dt~~~f~~e~e~~g~---lkaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGD---LKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhHHHHHHHHHHHhccC---hhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 122444455556666666 55554443322 235566777777777777777766444444444444555
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.3e-06 Score=74.62 Aligned_cols=265 Identities=8% Similarity=-0.074 Sum_probs=181.4
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 191 CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT-MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+.|+.....+...+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+....- -+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 3457777888888888888888888888887653 343321 11122223567777777777776655431 1222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAG 345 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 345 (514)
.-.......++++.|+.+-++..+.+ +..+-.-...+...|+.++|.-.|+..+. +.| +...|..|+.+|.-.|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 33344455678888888888776543 34443334567788999999999998876 344 5678999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHH-hcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHH
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMA-DILA-RAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a 421 (514)
++.+|...-+...+. +.-+..+...+. ..+. ...--++|.+++++.. .+|+- ...+.+...+...|. .+.+
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~---~~D~ 457 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP---TKDI 457 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc---cchH
Confidence 999888877776653 344444544432 2222 1223478888888875 67764 556667777888888 8889
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 422 NEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...++......|+ ......|++.+...+.+++|++.|......+
T Consensus 458 i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 458 IKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999988887 4578899999999999999999988765543
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-06 Score=82.69 Aligned_cols=371 Identities=12% Similarity=0.074 Sum_probs=236.4
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 150 (514)
..|+++.|..+|-+... ++|-+.|..=..+|+..|++++|++=-.+-++ +.|+-. .|.-...++...|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 58999999999976532 45667788888899999999988877666555 456554 78888888888999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc-----CC--C------ChhhHHHHHHHHHhC-------CC
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM-----CE--R------SVVSWNVIITVCVEN-------LW 210 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-----~~--~------~~~~~~~li~~~~~~-------~~ 210 (514)
.|.+-++.. +.|...++.+..++... . .+.+.|..- .. | ....|..++..+-+. .+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 998877764 34556667777666111 0 111111111 00 0 011233333222111 01
Q ss_pred hhHHHHHHHHHH--------HCC-------CCC----------------------CHHHHHHHHHHHhccCChHHHHHHH
Q 046312 211 LGEAVGYFVKMK--------DLG-------FEP----------------------DETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 211 ~~~a~~~~~~m~--------~~~-------~~p----------------------~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
.+...+....+. ..| ..| -..-...+.++..+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111110 000 111 1123567888888888999999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH---HHH-------HHHHHHHHHcCChHHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINV---WTW-------SAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
...++.. .+..-++....+|...|.+..+...-+...+..- .-| ..+..+|.+.++++.+...|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8888776 4666777788889999988887777666554221 122 223446667788899999998877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHH
Q 046312 324 NSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAYTFIMNMP-FQP-NPI 400 (514)
Q Consensus 324 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 400 (514)
.....|+..+ +....+++....+... -+.|... -...-...+.+.|++..|+..+.++. ..| |..
T Consensus 326 te~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 6554544322 2333444444433333 2344421 12222556778888888888888875 334 667
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.|....-+|.+.+. +..|.+-.+..++++|+....|.--+.++....+|++|.+.|++-.+.+.
T Consensus 394 lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 394 LYSNRAACYLKLGE---YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88888888888888 88888888888888888888888888888888888888888888877653
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=6.7e-07 Score=75.05 Aligned_cols=186 Identities=13% Similarity=-0.012 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
..|.-.|...|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+.|+..++.... +..+.|...-.+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 344455556666666666666655542 223345555555555555555555555555554322 344455555555555
Q ss_pred CCHHHHHHHHHhcCc-C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 279 GAVGCARLLFSRMEE-I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 279 g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
|++++|...|+.... | -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555443 2 12344445455555555555555555555432 11123344444444455555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
++..... ..++..+.-..|+.--+.|+-+.+-+.
T Consensus 196 ~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 196 LERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 5555442 224444444444444445554444433
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=5.1e-06 Score=79.72 Aligned_cols=296 Identities=8% Similarity=-0.085 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch---HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHH--
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFT---YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNN-- 169 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 169 (514)
..|..+...+...|+++.+.+.+....+.. +++... .......+...|++++|.+++++..+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 445556666666677777766666654431 222211 1122334556778888888888877663 223333331
Q ss_pred -HHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046312 170 -LVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN 245 (514)
Q Consensus 170 -li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 245 (514)
........+..+.+.+.++...+. .......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111112234555555555443222 22233445566777888888888888887763 3345566667777778888
Q ss_pred hHHHHHHHHHHHHhCCC-Cc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH--HHH----H--HHHHHHHHcCChHH
Q 046312 246 LSLGKWVHLQLIERGTV-LN--CQLGTALIDMYAKCGAVGCARLLFSRMEEINV--WTW----S--AMILGLAQHGYAEE 314 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~--~li~~~~~~~~~~~ 314 (514)
+++|...++........ ++ ...+..+...+...|++++|..++++...+.. ..+ + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888777665321 22 22344667777788888888888877653211 111 1 12222333343222
Q ss_pred HHHH--HHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC--------chHHHHHHHHHHHhcCC
Q 046312 315 ALEL--FSNMKNSSIS--PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP--------MRIHYHTMADILARAGH 382 (514)
Q Consensus 315 a~~~--~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--------~~~~~~~li~~~~~~g~ 382 (514)
+.++ +......... .....-.....++...|+.+.|...++.+... ...+ .+.......-.+.+.|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 2222 1111111101 11111124455667778888888888777653 1110 01111122223456778
Q ss_pred HHHHHHHHHhCC
Q 046312 383 LKEAYTFIMNMP 394 (514)
Q Consensus 383 ~~~A~~~~~~~~ 394 (514)
.++|.+.+....
T Consensus 323 ~~~A~~~L~~al 334 (355)
T cd05804 323 YATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888877776653
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=8.1e-06 Score=72.83 Aligned_cols=428 Identities=11% Similarity=0.019 Sum_probs=230.9
Q ss_pred ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHH
Q 046312 40 SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFID 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 119 (514)
+-+++...+..+.... .++..++-.|...+- -.|.+.+|..+-.+.+ .++..-..|+..-.+.|+-++-+.+-+.
T Consensus 72 dY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~F--yLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKD-DAPAELGVNLACCKF--YLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred cHHHHHHHHHHHhccC-CCCcccchhHHHHHH--HHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3444444555444432 455555555554444 4689999999888876 3443334444444555554444444333
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH-HHHcCCCHHHHHHHhhcc---CCCCh
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR-FYGSCRRKRDACKVFDDM---CERSV 195 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~~---~~~~~ 195 (514)
+... .+.-.++....-..-.+.+|+.++...... .|+-...|.-+. +|.+..-++-+.++++-. ...++
T Consensus 147 LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 147 LQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred Hhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 3221 111222333333333455556665555443 222222222222 233444444443333322 11122
Q ss_pred hhHHHHHHH------------------------------HHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 196 VSWNVIITV------------------------------CVEN-----LWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240 (514)
Q Consensus 196 ~~~~~li~~------------------------------~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 240 (514)
.+-|..... .++. .+-+.|++++-.+.+. .|. .-..++-.|
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYy 295 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeee
Confidence 222222211 1221 2334555555444432 222 233455567
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc-----CCHHHHHHHHHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG-------AVGCARLLFSRMEE-----INVWTWSAMILGLAQ 308 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 308 (514)
.+.+++.+|..+.+++.- ..|-..+...+ .++..| ...-|.+.|.-+.+ ..+.--.++.+.+.-
T Consensus 296 L~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 888999999888766521 11222222222 233333 34456666665543 122233456666677
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHhcCCHHHHH
Q 046312 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-TMADILARAGHLKEAY 387 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~ 387 (514)
..++++++-++..+..--..-|...| .+.++++..|.+.+|+++|-.+... .+ .|..+|. .|.++|.+.|+++.|.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHH
Confidence 77899999988887764333344444 4778999999999999999888642 23 3455555 5678999999999999
Q ss_pred HHHHhCCCCCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 388 TFIMNMPFQPNPIVLRAL-LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+++-++..+.+..+.-.+ .+-|.+.++ +=-+.++++.+..++|. +..|. |+-....-+|+.+....
T Consensus 449 ~~~lk~~t~~e~fsLLqlIAn~CYk~~e---FyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 449 DMMLKTNTPSERFSLLQLIANDCYKANE---FYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCC
Confidence 999999754455554444 466888888 88899999999999986 33332 44445556666666554
Q ss_pred CCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 467 LKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
..|.|.... .+.+.-....+ -.++.-+++-|+...++
T Consensus 516 ~~~~p~~~~-------rEVvhllr~~~-nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 516 TDPIPISQM-------REVVHLLRMKP-NSQCEFMIKVVRKWAET 552 (557)
T ss_pred CCCCchhHH-------HHHHHHHHhCC-CchHHHHHHHHHHHHHh
Confidence 444443322 12222223333 23355556555554443
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=8.2e-08 Score=87.51 Aligned_cols=251 Identities=11% Similarity=0.019 Sum_probs=158.9
Q ss_pred HHHHcCCCHHHHHHHhhcc--CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 172 RFYGSCRRKRDACKVFDDM--CE-RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~--~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
+-+.-.|.+..+..-.+.- .+ .+......+.+++...|+++.++ .+..... .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455678888887544411 11 12334556678888888877654 3333333 6666666666655554444444
Q ss_pred HHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 249 GKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 249 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
+..-+++....... .+..+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 44444433333322 23333344445667789999998888776 56677777888899999999999999998864
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHH
Q 046312 328 SPNYVTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIV 401 (514)
Q Consensus 328 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 401 (514)
..| .+...+..++.. ...+..|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+.. ..| +..+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 233 444445554433 3468889999999876 456777888888888889999999999888864 333 4566
Q ss_pred HHHHHHHHHhcCCCCcc-hHHHHHHHHHHhcCCCCC
Q 046312 402 LRALLSASSIHDAKYQD-GVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 436 (514)
...++......|+ . +.+.+.+..+....|+.+
T Consensus 238 LaNliv~~~~~gk---~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGK---PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT----TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCC---ChhHHHHHHHHHHHhCCCCh
Confidence 6667777777777 4 667788888888888754
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.2e-05 Score=73.04 Aligned_cols=382 Identities=9% Similarity=0.008 Sum_probs=223.4
Q ss_pred HHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 65 ELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 65 ~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
.-++.+. +.|++++|....+++.. +.+...+..=+-++.+.+++++|+.+.+.-.. ...+..-+.--..+.-+.
T Consensus 17 t~ln~~~--~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHG--KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhc--cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 3456667 89999999999888763 23445666667778889999999966554221 111111111223344577
Q ss_pred CCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+-.- ..+... ..+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLL 164 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHH
Confidence 89999999887 33333 3366666778899999999999999997776666655554322111 111111 123
Q ss_pred HHCCCCCCHHHHHHHHH---HHhccCChHHHHHHHHHHHHhC-------CCCch-------hHHHHHHHHHHhcCCHHHH
Q 046312 222 KDLGFEPDETTMLVVLS---ACTELGNLSLGKWVHLQLIERG-------TVLNC-------QLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 222 ~~~~~~p~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~A 284 (514)
......| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. .+---+.-.+-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3333344 335544443 4557899999999999884321 01011 1122344567789999999
Q ss_pred HHHHHhcCc---CCH----HHHHHHHHHHH---------------------------------------------HcCCh
Q 046312 285 RLLFSRMEE---INV----WTWSAMILGLA---------------------------------------------QHGYA 312 (514)
Q Consensus 285 ~~~~~~~~~---~~~----~~~~~li~~~~---------------------------------------------~~~~~ 312 (514)
..++....+ +|. +.-|.++..-. -.+..
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999987763 111 11111111000 00111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHH
Q 046312 313 EEALELFSNMKNSSISPNYVTFLGVLCACNH--AGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
+.+.++-... .+..|. ..+..++..+.+ ......+..++....+. .+-+ ..+.-..+......|+++.|.++
T Consensus 324 ~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 324 DQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1111111100 122233 334444443322 22467777888777763 2222 44555667778899999999999
Q ss_pred HH--------hCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC----CCCC---chHHHHHHHHHhcCCHH
Q 046312 390 IM--------NMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE----PRGS---QNLVIVANKYAEVGMWE 453 (514)
Q Consensus 390 ~~--------~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~ 453 (514)
+. .+. +.-.+.+...++.-+.+.++ .+.+..++..+..-- +... ..+..++..-.+.|+-+
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~---~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD---NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC---CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 444 33344555567777788888 777888887775532 2221 23334555556789999
Q ss_pred HHHHHHHHHHhCCC
Q 046312 454 KVSNVRRFMKNVGL 467 (514)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (514)
+|...++++...+.
T Consensus 476 ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 476 EASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987543
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=1.2e-05 Score=77.12 Aligned_cols=188 Identities=9% Similarity=-0.031 Sum_probs=88.2
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch---HHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHH
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT---NNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITV 204 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 204 (514)
.|..+...+...|+.+.+.+.+....+.. +++... .......+...|++++|.+++++.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 45555555566666777666665554432 122111 1112233455666666666666552 122223331 111
Q ss_pred HHh----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 205 CVE----NLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 205 ~~~----~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...+++..+... .+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC
Confidence 222 2333333333332 11112222 2333344455566666666666666665542 23444555555566666
Q ss_pred CHHHHHHHHHhcCc-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE-----INV--WTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 280 ~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
++++|..++++..+ ++. ..|..+...+...|++++|..++++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666555443 111 123344555555566666666665554
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=2.1e-07 Score=84.90 Aligned_cols=218 Identities=9% Similarity=0.002 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCh
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP-DETTMLVVLSACTELGNL 246 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~ 246 (514)
..+.+++...|+++.+..-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3344555555655554444433333444444333333222223333333333322222121 112222222334455566
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-HHHHHHHHHHHH----HcCChHHHHHHHHH
Q 046312 247 SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-VWTWSAMILGLA----QHGYAEEALELFSN 321 (514)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~~~~~~a~~~~~~ 321 (514)
++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ ..+...+..++. -.+.+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 6655555431 234444455556666666666666666655421 122222322222 12345566666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 046312 322 MKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL-KEAYTFIMNMP 394 (514)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 394 (514)
+.+. ..++..+.+.+..+....|++++|..++.+.... -+-+..+...++.+....|+. +.+.+.+.++.
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5443 3455555555555566666666666665555432 122344444445544455554 44555555554
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.6e-05 Score=78.45 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=219.7
Q ss_pred ChHHHHHHHH--hcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc-C-------C-CC
Q 046312 59 DAQILKELVR--FCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRR-G-------I-KP 127 (514)
Q Consensus 59 ~~~~~~~ll~--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-------~-~p 127 (514)
|..+-..++. +|. .-|+.+.|.+-+.-+. +-..|..+.+.|.+.++.+-|.-.+-.|... | . .|
T Consensus 725 d~~TRkaml~FSfyv--tiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV--TIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEE--EeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 5677777776 555 8999999999888776 4567999999999999999988888777542 2 1 12
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCC-hhhHHHHHHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERS-VVSWNVIITVCV 206 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 206 (514)
+ .+-..+.-.....|.+++|+.++++-.+. ..|=..|-..|.+++|.++.+.-..-. ..||.....-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 33333344456789999999999987754 335566788899999999876542211 235666666666
Q ss_pred hCCChhHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 046312 207 ENLWLGEAVGYFVKM----------KDLG---------FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQL 267 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m----------~~~~---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 267 (514)
..++.+.|++.|++. .... -.-|...|.--...+-..|+.|.|..+|+...+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 778888888888763 1111 011223333333344456666777666666544
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA--- 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 344 (514)
|-++++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+.+. |...|+.|-..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHH
Confidence 335556666667777776665543 3555666778888888888888888877653 23333333222
Q ss_pred ------------CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC-------------CCCCCH
Q 046312 345 ------------GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM-------------PFQPNP 399 (514)
Q Consensus 345 ------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~p~~ 399 (514)
.+.-.|-++|++.- .. +..-+..|-+.|.+.+|+++--+- ....|+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 22333334444332 11 122334466777777776653221 122355
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----------------------CCCC---------CchHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLEL----------------------EPRG---------SQNLVIVANKYAE 448 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~----------------------~p~~---------~~~~~~l~~~~~~ 448 (514)
...+....-+..+.+ +++|..++-.+.+. -|.. ...+..+++.|.+
T Consensus 1081 ~ll~RcadFF~~~~q---yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQ---YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 555555555666666 66666655544332 1211 1245688999999
Q ss_pred cCCHHHHHHHHHH
Q 046312 449 VGMWEKVSNVRRF 461 (514)
Q Consensus 449 ~g~~~~A~~~~~~ 461 (514)
+|.+..|.+-|-+
T Consensus 1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred ccchHHHHHHHhh
Confidence 9998888766544
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=1.5e-05 Score=86.60 Aligned_cols=325 Identities=11% Similarity=-0.038 Sum_probs=206.2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC----CC----C----hhhHHHHHHHHH
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC----ER----S----VVSWNVIITVCV 206 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~----~----~~~~~~li~~~~ 206 (514)
....|+++.+...++.+.......+..........+...|++++|..+++... .. + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33456666666665554221112233333445556678899999888887651 11 1 111222334566
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHh
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDE----TTMLVVLSACTELGNLSLGKWVHLQLIERGT-----VLNCQLGTALIDMYAK 277 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 277 (514)
..|++++|...+++....-...+. .....+...+...|++++|...+++.....- .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763111221 2344555667789999999999988765421 1112345566778889
Q ss_pred cCCHHHHHHHHHhcCc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHh
Q 046312 278 CGAVGCARLLFSRMEE-------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS--SISPN--YVTFLGVLCACN 342 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~ 342 (514)
.|+++.|...+++..+ + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998877653 1 1223444556677789999999999887653 11122 333445566778
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHh
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHY-----HTMADILARAGHLKEAYTFIMNMPF-Q-PNP----IVLRALLSASSI 411 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~ 411 (514)
..|+.+.|...++..............+ ...+..+...|+.+.|..++..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998886531111111111 1122445568999999999877651 1 111 113456677888
Q ss_pred cCCCCcchHHHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEP------RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.|+ .++|...++.+..... ....+...++.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~---~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQ---FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCC---HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899 8999888888876531 112356688999999999999999999987654
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.8e-06 Score=75.11 Aligned_cols=311 Identities=13% Similarity=0.075 Sum_probs=171.2
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CChhhHHH-HHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSVVSWNV-IITV 204 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~ 204 (514)
-..-+.+++..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQS 87 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 33446667777777777777777776665553 22555566677777777777777777777733 33333322 2344
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC--TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
+-+.+.+..|+.+...|.+. |+...-..-+.+. ...+++..+..++++.-..| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 55667777777777666542 2222222222221 23455555555555543222 2233333333445566666
Q ss_pred HHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHhccCcHHHHHHHH
Q 046312 283 CARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FL---GVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 283 ~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~---~ll~~~~~~~~~~~a~~~~ 354 (514)
.|.+-|+...+ .....|+..+ +..+.|+++.|+++..++++.|++-.+.. .. -.+.+- ..|+. ..+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence 66666665554 2233444333 23344556666666666666554322110 00 000000 00000 0000
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
.. .=+..+|.-...+.+.|+.+.|.+-+-+|+ ...|++|...+.-.- ..++ ...+.+-+..+.+
T Consensus 237 ~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~---p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 237 QS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR---PTEGFEKLQFLLQ 304 (459)
T ss_pred HH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC---ccccHHHHHHHHh
Confidence 00 001123333334568899999999999997 445667765554222 2233 4557777888888
Q ss_pred cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 431 LEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 431 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
++|-.+.+|..++-.|++..-++-|-.++-+-
T Consensus 305 ~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 305 QNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 89887889999999999999999998887654
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=2.7e-05 Score=69.38 Aligned_cols=312 Identities=9% Similarity=-0.030 Sum_probs=210.1
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcch-HHH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLI---RGYAWSDRPREAVWVFIDMKRRGIKPTEFT-YPF 134 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ 134 (514)
++.-.-.+-..+. .+|.+.+|+.-|.... ..|+..|.++. ..|...|+...|+.=+.+..+ .+||-.. -..
T Consensus 37 dvekhlElGk~ll--a~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELL--ARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHH--HhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 3343444444444 5888999988888887 77887777765 357778888888888888777 4677642 222
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHH
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
-...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-+.+ ...+..+...|+...|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhH
Confidence 2345778899999999998888773 33222 11222222222222221 1223345567788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-
Q 046312 215 VGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE- 293 (514)
Q Consensus 215 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 293 (514)
+.....+.+.. +.|...|..-..+|...|++..|..-++...+..- .+...+..+...+...|+.+.++...++..+
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 88888887763 55777777777888888888888777777666543 3455555677777888888888887777765
Q ss_pred -CCHH----HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHH
Q 046312 294 -INVW----TWSAM---------ILGLAQHGYAEEALELFSNMKNSSISPNYV---TFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 294 -~~~~----~~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
||.. .|..+ +......++|.++++-.+...+........ .+..+-.++...+++.+|++.-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 3221 12111 234566788889998888887754332222 345555677788999999999998
Q ss_pred HHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 046312 357 MEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP 397 (514)
Q Consensus 357 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 397 (514)
+. .+.|+ +.++.--..+|.-...++.|+.-|+.+. ..+
T Consensus 333 vL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 333 VL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 87 44676 7888888889999999999999999886 444
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.7e-05 Score=78.59 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=88.6
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCC-CCCccc-----HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIP-----WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 136 (514)
+..+.+.|. ++|-+..|++.+..+.. .+.+++ =..++ .|.-.-.++.+++.++.|...++.-|..+...+.
T Consensus 609 ra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677888999 99999999988877653 111111 11223 3333457889999999999988888887777666
Q ss_pred HHHhccCCchHHHHHHHHHHHh-----------CCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 137 KACAEISGLNEGMQVQANVTKS-----------GLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
.-|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 6666655556666666654321 24567777788899999999999999988765
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=4.2e-05 Score=83.27 Aligned_cols=328 Identities=10% Similarity=-0.074 Sum_probs=208.5
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC------CC--cchHHHHHHHH
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD------SD--VYTNNNLVRFY 174 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~ 174 (514)
.+...|++..+...++.+.......+..........+...|+++++...+......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777666522211122333334445566789999999999887553111 11 11222334456
Q ss_pred HcCCCHHHHHHHhhccCC----CCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHh
Q 046312 175 GSCRRKRDACKVFDDMCE----RSV----VSWNVIITVCVENLWLGEAVGYFVKMKDLGF---EPD--ETTMLVVLSACT 241 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~t~~~ll~~~~ 241 (514)
...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 788999999998887622 221 2445566677889999999999988765311 111 234455666778
Q ss_pred ccCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc------C--CHHHHHHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIER----GTV--L-NCQLGTALIDMYAKCGAVGCARLLFSRMEE------I--NVWTWSAMILGL 306 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 306 (514)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998877653 211 1 223445566777888999999999887643 1 123444566678
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHH
Q 046312 307 AQHGYAEEALELFSNMKNSS--ISPNYV--T-F-LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADIL 377 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~ 377 (514)
...|++++|...+.+..... ...... . . ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 88999999999998886521 111110 1 0 11223445578999999887775531 11111 11134567778
Q ss_pred HhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 378 ARAGHLKEAYTFIMNMP-------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
...|+.++|...+++.. ..+ ...+...+..++...|+ .+.|...+..+.++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~---~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR---KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCc
Confidence 89999999999998874 111 12456667778899999 99999999999887643
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.3e-07 Score=85.42 Aligned_cols=218 Identities=12% Similarity=0.032 Sum_probs=167.8
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667788888888888877633 677788888888888888888888887775 356777777778888888888888
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 318 LFSNMKNSSIS-----P---NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 318 ~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
.++.-+....+ + +...-.. ..+..........++|-++....+.++|..+...|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877653210 0 1000000 122333445566677777776657668888888898889999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 390 IMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 390 ~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|+.+. ++| |...||-|...+....+ ..+|..++.++.++.|.-..+..-|+-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 677 56789999888888777 99999999999999999999999999999999999999999877653
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=6.3e-05 Score=74.49 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCC----------Cc-ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDS----------VP-IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI 125 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~----------~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 125 (514)
-.+..+|..+.++|. +..+++-|.-.+..|.+.+ +. ..-....-.-...|-.++|+.+|++.++
T Consensus 754 IkS~~vW~nmA~McV--kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCV--KTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred HhhhHHHHHHHHHhh--hhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 346689999999999 9999999988888875411 11 1111222223456889999999998876
Q ss_pred CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC------------
Q 046312 126 KPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER------------ 193 (514)
Q Consensus 126 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------ 193 (514)
|..|-+.|-..|.+++|.++-+.=-+..+ ..||.....-+-..+|.+.|++.|++...+
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 34455677788999999888764322221 245555666666778888888888876221
Q ss_pred -----------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 046312 194 -----------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTV 262 (514)
Q Consensus 194 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 262 (514)
|...|.-...-+-..|+.+.|+.+|...++ |-.+++..|-.|+.++|.++-++-
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------ 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------ 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence 333333333444456777777777776653 456677778889999998886652
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
-|......|.+.|-..|++.+|..+|.+..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 366777788999999999999999988765
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=4.7e-08 Score=56.77 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 362 GIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|+.||..+|++||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00018 Score=68.21 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CC-CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DS-VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+-|..+|+.||+-+. ....++++..++++.. .| .+..|..-|..-.+..+++....+|.+....- .+...|..
T Consensus 17 P~di~sw~~lire~q---t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ---TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 457889999999877 4499999999998863 23 34578888999999999999999999987753 35556666
Q ss_pred HHHHHhc-cCCchHHHHHHHH-----HHHhCCCC-CcchHHHHHHHH---------HcCCCHHHHHHHhhcc
Q 046312 135 VLKACAE-ISGLNEGMQVQAN-----VTKSGLDS-DVYTNNNLVRFY---------GSCRRKRDACKVFDDM 190 (514)
Q Consensus 135 ll~~~~~-~g~~~~a~~~~~~-----~~~~~~~~-~~~~~~~li~~~---------~~~~~~~~A~~~~~~~ 190 (514)
-+..-.+ .|+...+....-+ +.+.|+.+ +-.+|+..+..+ ....+++..+++++++
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 6654332 3444443333222 23345443 234455555432 3334566677777777
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00026 Score=71.84 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=207.7
Q ss_pred HHHHHHHHHhCCC--CChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCccc-----HHHHHHHHHhCCCchHHHHHH
Q 046312 45 YQIHAQIQVSGLQ--NDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIP-----WNNLIRGYAWSDRPREAVWVF 117 (514)
Q Consensus 45 ~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~ 117 (514)
+++.++.+..+++ .|+.--+..+.++. ..+-..+..++++++.-.+++++ -|.||-...+ -+.....++.
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfM--tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI 1043 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYI 1043 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHH--hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHH
Confidence 3444444444433 24444455555555 55555666666665532233322 1222222222 2344455555
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhh
Q 046312 118 IDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVS 197 (514)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 197 (514)
+++-..+ .| .+...+...+-+++|..+|++. ..+....+.||. .-+.++.|.++.++..+ ...
T Consensus 1044 ~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~v 1106 (1666)
T KOG0985|consen 1044 NRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAV 1106 (1666)
T ss_pred HHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHH
Confidence 5443321 11 1233344455555666555533 222333333332 23455556555555543 356
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-.+++...++..-+|... +.|+-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 788888888888888887766432 366778888888888888888888887777766555443 567788888
Q ss_pred cCCHHHHHHHHHhcCc-----------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 278 CGAVGCARLLFSRMEE-----------------------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
.+++.+.++++..--. .++.-|..|...+...|++..|...-++. .+..||
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 8887777665532110 23345566666677777777766655543 356677
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIK--PMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
..+-.+|...+.+..|. | +|+. ....-..-++..|...|-+++...+++... .+.....|.-|.-.|+
T Consensus 1253 K~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 77777787776655442 2 2433 344556778999999999999999998774 3334455666665666
Q ss_pred hcCCCCcchHHHHHHHHHHh-cC-C------CCCchHHHHHHHHHhcCCHHHHH
Q 046312 411 IHDAKYQDGVGNEVRRRLLE-LE-P------RGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
+-. .++..+-++.+.. .+ | +....|.-|.-.|.+-..+|.|.
T Consensus 1325 kyk----p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1325 KYK----PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hcC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 543 4555555555543 22 1 12234555555555555555543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=6.4e-06 Score=70.96 Aligned_cols=150 Identities=7% Similarity=0.024 Sum_probs=113.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4467888888876554433221 11 0122356677777777777763 25568889999999999999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 383 LKEAYTFIMNMP-FQP-NPIVLRALLSAS-SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 383 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+++|...|++.. ..| +...+..+..++ ...|+ ...+++.++++.+.+.+|+++.++..++..+.+.|++++|...|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999886 445 567777777764 55555 11389999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 046312 460 RFMKNVGL 467 (514)
Q Consensus 460 ~~m~~~~~ 467 (514)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987654
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=2e-05 Score=82.25 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=166.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFL 335 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (514)
+...|-..|......++.++|+++.++... .-...|.+++.....-|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 456777888888999999999999998764 23457888888888888888999999999874 22345588
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSI 411 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~ 411 (514)
.|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|..++.++. .-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999765 567789999999999999999999998875 3343 3444555566678
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMK 471 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 471 (514)
.|+ .+.++.+++-...-.|.-.+.|+.+++.-.+.|..+.++.+|++....++.+-.
T Consensus 1613 ~GD---aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred cCC---chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 899 888999999999999999999999999999999999999999999998875443
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.8e-05 Score=75.32 Aligned_cols=248 Identities=12% Similarity=0.079 Sum_probs=176.3
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHH
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 214 (514)
-+.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .+..+.-+|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467889999999999998875 44778999999999999998889988888844 3556777777889999999999
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 215 VGYFVKMKDLGFE-----P---DETTMLVVLSACTELGNLSLGKWVHLQL-IERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 215 ~~~~~~m~~~~~~-----p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
+..|+..+....+ + +...-.. ..+.....+....++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999888664311 0 0000000 1111112233444444444 44455688889999999999999999999
Q ss_pred HHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 286 LLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 286 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+.|+.... | |...||.|...++...+.++|+..|++.++ ++|+. .....|.-+|...|.+++|...|-.+....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99998875 3 678999999999999999999999999998 57773 333335557889999999998887766431
Q ss_pred CC--------CCchHHHHHHHHHHHhcCCHHHHHHHH
Q 046312 362 GI--------KPMRIHYHTMADILARAGHLKEAYTFI 390 (514)
Q Consensus 362 ~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (514)
.. .++...|..|=.++.-.++.|-+.+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 11 122346666666666666666554443
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=8.2e-06 Score=73.17 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=124.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-V---WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTF 334 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 334 (514)
.....+..+...+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456677778888888999999888887765 32 2 45677778888889999999999888874321111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 046312 335 LGVLCACNHA--------GMVEDGYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRAL 405 (514)
Q Consensus 335 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 405 (514)
..+..++... |+.+.|.+.++.+.+. .|+.. .+..+... .. ..... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH---H--------HHHHHH
Confidence 4444455443 6788888888888765 44432 22222111 11 01100 0 011245
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+...|+ .+.|...++.+.+..|+++ .++..++.++.+.|++++|..+++.+..+.
T Consensus 173 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGA---YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCC---hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566888999 9999999999999877654 578899999999999999999999887643
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2e-05 Score=77.10 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=175.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
.+|-...-..+.+.+...|-...|..+|+++. .|.-++.+|+..|+..+|..+..+-.+ -+|+...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445556778889999999999999999865 788888999999999999999988887 37889999999888
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.-. ..| ...+|-.+..+..+.++ +
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek---~ 535 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK---E 535 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh---h
Confidence 88888888898888776542 11122222334789999999997754 444 56888888888889999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHH
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGI 498 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 498 (514)
+.+.+++.....++|++...|+.+..+|.+.|+..+|...+++....+.+ +-..| ...+.-...-|.+++|
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iW-------ENymlvsvdvge~eda 606 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIW-------ENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeee-------echhhhhhhcccHHHH
Confidence 99999999999999999999999999999999999999999999988743 33556 4455555677888888
Q ss_pred HHHHHHHHH
Q 046312 499 YQILETLNL 507 (514)
Q Consensus 499 ~~~~~~m~~ 507 (514)
.+.+.+|-.
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 888777654
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.0002 Score=70.26 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++-|-.+.+...+- .-+.+...++.-+...|++++|.+-+-+....+
T Consensus 979 fd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 979 FDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 44444444433322 224467788888899999999988777665543
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.5e-05 Score=72.10 Aligned_cols=348 Identities=11% Similarity=0.030 Sum_probs=209.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 180 (514)
.+....|+++.|+.+|-+..... ++|...|..-..+++..|++++|.+=-.+-++. .|+ ..-|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999999988763 457778999999999999999998877666655 565 46788899999999999
Q ss_pred HHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHhcc-------C
Q 046312 181 RDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEA---VGYFVKMKDL---GFEPDETTMLVVLSACTEL-------G 244 (514)
Q Consensus 181 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~-------g 244 (514)
++|+.-|.+-.+ .+...++-+..++......... -.++...... ........|..++...-+. .
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999988743 3556777777776211000000 0011111000 0000112233333322111 0
Q ss_pred ChHHHHHHHHHHHH--------hC-------CCC----------------------chhHHHHHHHHHHhcCCHHHHHHH
Q 046312 245 NLSLGKWVHLQLIE--------RG-------TVL----------------------NCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 245 ~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
+.+...+..-.+.. .+ ..| -..-...+.++..+..+++.|.+.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111111100 00 011 001223445555666677777777
Q ss_pred HHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHhccCcHHHHHHHHHHHH
Q 046312 288 FSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG-------VLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 288 ~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
+....+ .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.++++.+..+|.+..
T Consensus 247 y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 766554 33344555566677777777766666665555421 1112222 2234555677777777777766
Q ss_pred HhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.. .-.|+. ..+....+++....+... +.|.. .-...-...+.+.|+ +..|...+.+++..+|++.
T Consensus 326 te-~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd---y~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 326 TE-HRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD---YPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hh-hcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcCCchh
Confidence 54 223332 223344455555554443 44543 222223566788899 9999999999999999999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|..-+-+|.+.|.+..|.+-.+...+.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999888777764
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.6e-07 Score=54.53 Aligned_cols=32 Identities=38% Similarity=0.404 Sum_probs=16.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=0.00012 Score=71.76 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=181.3
Q ss_pred CCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 160 LDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 160 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
++|-...-..+...+...|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556677888999999999999999886 5688889999999999999999888877 37899999888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 316 (514)
....--+++|..+.+..... .-..+.....+.++++++.+.|+.-.+. -..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888877765433 2223333344578999999999977653 4578888888889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 046312 317 ELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP- 394 (514)
Q Consensus 317 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 394 (514)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+- . .-+...|...+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998876 4666 567999999999999999999999999873 4 4455677778888889999999999998874
Q ss_pred ---CCCCHHHHHHHHHHH
Q 046312 395 ---FQPNPIVLRALLSAS 409 (514)
Q Consensus 395 ---~~p~~~~~~~l~~~~ 409 (514)
...|......++.+.
T Consensus 616 ~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhcccchhhHHHHHHH
Confidence 222444444444443
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=5.1e-05 Score=79.35 Aligned_cols=230 Identities=16% Similarity=0.086 Sum_probs=148.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDE---TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
+...|-..|......++.++|.++.++.... +++-.. -.|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666666666666666543 222111 234444444444455566666666666543 2345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAG 345 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 345 (514)
.|...|.+.+++++|.++|+.|.+ .....|...+..+.++++-+.|..++.+..+.-.+-. .......+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777777788888888777765 3567788888888888888888888888776422211 223344444556778
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCCCcchH
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---FQP--NPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
+.++++.+|+.....+ +.-...|+.+++.-.+.|+.+.+..+|+++. ..| --..|.-.+..-..+|+ -+.
T Consensus 1615 DaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd---e~~ 1689 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD---EKN 1689 (1710)
T ss_pred CchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc---hhh
Confidence 8888888888888742 4456788888888888888888888888874 333 23667777777777787 555
Q ss_pred HHHHHHHHHh
Q 046312 421 GNEVRRRLLE 430 (514)
Q Consensus 421 a~~~~~~~~~ 430 (514)
++.+-.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.00017 Score=67.65 Aligned_cols=179 Identities=16% Similarity=0.066 Sum_probs=119.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCA 340 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~ 340 (514)
|+...+...+........-..+-.++.+..+ .....+.-....+...|+.++|+..++.++.. .|+... .......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444444443333333333333333322 22233333344456778888999999888774 455444 4455577
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++.. .+-|+..|..|..+|...|+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~--- 423 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN--- 423 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---
Confidence 88889999999999888854 666 5556677888889999999988888875 45577888889899988888
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
. .......++.|...|++++|...+...++..
T Consensus 424 ~-----------------~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 R-----------------AEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred h-----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 2 3344566777888888999998888887654
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00021 Score=67.14 Aligned_cols=197 Identities=16% Similarity=0.089 Sum_probs=139.2
Q ss_pred CHHHHHHHHHhcCc------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 280 AVGCARLLFSRMEE------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 280 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
+...+...-+.+.. ++...+...+.+......-..+..++-+-.+ ..-...-|...+. +...|.++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 34444545555543 4555666666554443333333333322222 1112333555554 4567999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
++.+... .+-|+.......+.+.+.++.++|.+.++++. ..|+ ....-.+..++.+.|+ .+++...++....-
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~---~~eai~~L~~~~~~ 403 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK---PQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC---hHHHHHHHHHHhhc
Confidence 9999874 34446666677889999999999999999987 6676 5667778899999999 99999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 432 EPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
+|+++..|..|+++|...|+..+|....-+.. ...|.+++|..++.+-++.++
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~--------------------------~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGY--------------------------ALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH--------------------------HhCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998877663 334566666666666665553
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=9e-05 Score=76.66 Aligned_cols=233 Identities=11% Similarity=-0.005 Sum_probs=139.4
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCC
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENL 209 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 209 (514)
.+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+...++.+++..+ .++.......
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 5666677776777777777777755554 333 33333333455555554443332 3344444455
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+|+++++.. +-|..+.|.+...|... ++++|++++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 554455555555553 2344567777778888888888888888888777 44777778888888777 8888887766
Q ss_pred hcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 290 RMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+.. ..+...+++..+.++|.++... .|+...+ -..+.+.+...-+..--+.+
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHH
Confidence 543 3366677888888888888764 2332221 11222222222233333445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
+.-+-..|-..++|+++..+|+.+. .+-|.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 5556666777777888888887775 2334555555665554
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0002 Score=61.80 Aligned_cols=176 Identities=14% Similarity=0.044 Sum_probs=103.7
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY 331 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 331 (514)
+.+.+.......+......-...|++.|++++|++........ .....=...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--E~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--EAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3444444444434344444445666777777777776663322 22222234455666777777777777752 345
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 046312 332 VTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRAL 405 (514)
Q Consensus 332 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 405 (514)
.|.+.|..++.+ .+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..+++... ...++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566656655543 3456777777777775 357777777777777777777777777777764 33455555555
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
+......|. ..+...+.+..+....|..+
T Consensus 248 iv~a~~~Gk--d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGK--DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCC--ChHHHHHHHHHHHhcCCcch
Confidence 555555555 13444556666666666543
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=0.00017 Score=73.11 Aligned_cols=109 Identities=8% Similarity=-0.082 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
...|...+.+.++. ...+..+|+.|.-. ...|++.-|.--|-+-. .+....+|..+.-.+....+ ++.|..+
T Consensus 799 ~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d---~E~A~~a 872 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD---FEHAEPA 872 (1238)
T ss_pred HHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc---HHHhhHH
Confidence 34666777766652 23445566666544 55577777776665554 33456778888878888888 9999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+..+..+.|.+...|...+......|+.-++..+|..
T Consensus 873 f~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999998898888888899998888888887
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0024 Score=64.53 Aligned_cols=389 Identities=11% Similarity=0.018 Sum_probs=211.8
Q ss_pred HHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 65 ELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 65 ~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
..+.++.+.+.|+.++|..+++.... ..|..+-..+-..|...|+.++|..+|++..+. -|+......+..++.+.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~ 123 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHH
Confidence 33444444478899999888887643 335566777788888889999999999888775 46666777778888888
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC----------HHHHHHHhhccCCCC--hhh---HHHHHHHHHh
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR----------KRDACKVFDDMCERS--VVS---WNVIITVCVE 207 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~ 207 (514)
+++.+-.++--+|.+. ++-+++.+-.+++.+...-. ..-|.+.++.+.+.+ ..+ ...-...+-.
T Consensus 124 ~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~ 202 (932)
T KOG2053|consen 124 KSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL 202 (932)
T ss_pred HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh
Confidence 8887766665555553 35566777777777655421 223555555554333 111 1111233445
Q ss_pred CCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----------
Q 046312 208 NLWLGEAVGYF-VKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA---------- 276 (514)
Q Consensus 208 ~~~~~~a~~~~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------- 276 (514)
.|.+++|..++ ....+.-...+...-+.-+..+...+++.+..++-.++...|.. | |...++.+.
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~ 278 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEP 278 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhccccc
Confidence 77888888888 33433323334444456667777888888888888888888743 2 333333221
Q ss_pred ------hcCCHHHHHHHHHhcCcC-CHHHHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046312 277 ------KCGAVGCARLLFSRMEEI-NVWTWSAMILGL---AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM 346 (514)
Q Consensus 277 ------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 346 (514)
..+..+...+...+.... .-..|-+-+.++ ..-|+.+++.-.|-+-. |-.|- |..=+..|...=.
T Consensus 279 a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpc---c~~Dl~~yl~~l~ 353 (932)
T KOG2053|consen 279 AEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPC---CAIDLNHYLGHLN 353 (932)
T ss_pred chhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcH---hHhhHHHhhccCC
Confidence 112222333322222211 112222222332 34577777655553322 32332 1111112222222
Q ss_pred HHHHHHHHHHHHHhhCCCCchH-------HHHHHHHHHHhcCC-----HHHHHHHHHhCC------------CCCC----
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRI-------HYHTMADILARAGH-----LKEAYTFIMNMP------------FQPN---- 398 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~~~------------~~p~---- 398 (514)
.+.-..++..... ..++.. -+...+..-.-.|. -+....++.+.. .-|.
T Consensus 354 ~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~ 430 (932)
T KOG2053|consen 354 IDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSF 430 (932)
T ss_pred HHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 2222333333221 111111 01111111111121 111122221110 1111
Q ss_pred -----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 399 -----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 399 -----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
..+.+.|+..+.+.++...+-+|.-+++......|.+...-..|+++|.-.|-...|.+.++.+--++++
T Consensus 431 g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 431 GDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 1344667788888888555556666677777777888777778999999999999999999888766664
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=7.7e-06 Score=66.59 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+...|++++|...|+... ..| +...|..+...+...|+ +++|...++.+.+++|+++.++..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE---YTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344555666677777777776654 333 55666666666777777 777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 046312 448 EVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~ 466 (514)
..|++++|...+++.....
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777777665543
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0002 Score=61.86 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=112.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI- 294 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 294 (514)
++.+.+......-+......-...|++.|++++|.+..+... +......=+..+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444434443444444556777888888887766521 2333333345566777888888888888874
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH
Q 046312 295 NVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY 370 (514)
Q Consensus 295 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 370 (514)
+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..+..+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHH
Confidence 44566667666654 45688899999999875 67888999999999999999999999999998752 3345555
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHhCC
Q 046312 371 HTMADILARAGHLKE-AYTFIMNMP 394 (514)
Q Consensus 371 ~~li~~~~~~g~~~~-A~~~~~~~~ 394 (514)
..+|..-...|...+ ..+.+.+..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 555555555565444 345555554
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=0.00012 Score=75.78 Aligned_cols=233 Identities=10% Similarity=0.041 Sum_probs=157.1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccC--CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMC--ER-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
+...+..|+..|...+++++|.++.+... .| ....|-.+...+.+.++.+.+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 45678888888888999999988887662 23 333444444466666665555444 22333
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
.....++..+..+...+...+ -+...+..+..+|-+.|+.++|...|+++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333344444444555555432 3445777888889999999999999988876 4677888888888888 888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 396 (514)
+++.+.... +...+++..+..+|.++... ..-+...+..+.+.....-. ..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~------------~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHRE------------FT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhc------------cc
Confidence 888877653 55667888888888888863 22233343333333222211 12
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
--+.++-.+-..|...++ ++.+..+++.+.+.+|.|..+..-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223444556667777788 999999999999999999888888888886
No 123
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00019 Score=66.53 Aligned_cols=232 Identities=15% Similarity=0.066 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
++..+-..+...+..++|+..+.++++. .|+. ..|..--.++...| +++++...++.+.+.+.+ +..+++...-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3344444455566667777777766654 2332 23333333333344 345555555555554432 23333333222
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.+.|+. ..++++.+++++++.. +-|..+|.....++...|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333321 0133444444444321 122334444444444444455555555
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCC-CcchHHHHH
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARA---GH----LKEAYTFIMNM-PFQP-NPIVLRALLSASSIHDAK-YQDGVGNEV 424 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~~~~a~~~ 424 (514)
+++.+. . .-|...|+.....+.+. |. .+++++...++ ...| |...|+.+...+...+.. .....+.+.
T Consensus 166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 554442 1 11223333322222222 11 12334444232 2233 344454444444442210 013445566
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVG------------------MWEKVSNVRRFMK 463 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 463 (514)
+..+.+.+|+.+.+...|++.|+... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 66666666666666667777776532 3467888888883
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=4.7e-05 Score=68.21 Aligned_cols=183 Identities=16% Similarity=0.038 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-H---HH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-V---WT 298 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~ 298 (514)
......+..+...+...|+++.|...++++....... ....+..+..+|...|++++|...++++.+ |+ . ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3455677788888999999999999999998875321 124677888999999999999999999875 32 2 24
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 299 WSAMILGLAQH--------GYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 299 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+..++... |+.++|.+.++++.+. .|+.. ....+... .. . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HH
Confidence 55555566654 7889999999999875 44432 22211110 00 0 00000 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
...+...+.+.|++++|...+++.. ..| ....+..+..++...|+ .++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 1134455666677777776666653 222 23556666666777777 6666666665554433
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=0.0016 Score=66.49 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 282 GCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 282 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
..|+..+.+..+ .+..+|+.|.-. ...|.+.-+...|-+-... .+.+..+|..+.-.|.+..+++.|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 356666665543 566777776554 5556677777666655543 23445667667667778889999999988886
Q ss_pred HhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCC-------CcchHHHH
Q 046312 359 HVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNM-----P--FQPNPIVLRALLSASSIHDAK-------YQDGVGNE 423 (514)
Q Consensus 359 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~l~~~~~~~~~~-------~~~~~a~~ 423 (514)
.+.|+ ...|-.........|+.-++..+|..- . -.|+..-|-+...-...+|+. .+...|.-
T Consensus 878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 44564 455554444455678888888888652 1 223333333333333344430 01333444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 424 VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+++....-.|+...+|...+....+.+.+.+|.+...+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555556667888888888888888888888888877765
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.0033 Score=59.97 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHhhcC--hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHH
Q 046312 26 SKARQCLSFLKLCCS--KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIR 102 (514)
Q Consensus 26 ~~~~~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~ 102 (514)
-+..+...+++..+. ....+...+++.. -++-.+..|..-|..-. +..+++...++|.+... .-++..|...|+
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El--~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVN-VFPSSPRAWKLYIEREL--ASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 355666677776643 3444566665543 23445577777777766 77788888888877542 335566666665
Q ss_pred HHHh
Q 046312 103 GYAW 106 (514)
Q Consensus 103 ~~~~ 106 (514)
.-.+
T Consensus 95 YVR~ 98 (656)
T KOG1914|consen 95 YVRE 98 (656)
T ss_pred HHHH
Confidence 5433
No 127
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00053 Score=63.66 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
.+-..+...++.++|+.+++++.+. .|+.. .|+..-.++...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3344445566677777777776663 34333 3444444455555 4567777777776654 3344455555444445
Q ss_pred CCCH--HHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCh--
Q 046312 177 CRRK--RDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL---GNL-- 246 (514)
Q Consensus 177 ~~~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~-- 246 (514)
.|+. +++..+++++. ..|..+|+...-++.+.|+++++++.++++++.+. -|...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 5542 45566665552 23555666666666666777777777777776652 2444444444333332 111
Q ss_pred --HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 247 --SLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 247 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
+....+...++...+ -|...|+-+...+..
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKD 229 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhc
Confidence 234444444444432 244455444444444
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=1.4e-05 Score=65.09 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
.++++.++ +.|+. +..+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 334556667778888888888777643 12346667777777788888888888887775 3
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 396 -QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 396 -~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+.+...+..+..++...|+ .++|...++.+.+..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3356777777777778888 888888888888888887776665555443
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00026 Score=60.70 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=95.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH
Q 046312 307 AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (514)
-..|++++|+++++.+++.. +.|..++-.=+...-..|+.-.|++-+.+..+ .+..|...|.-+...|...|+++.|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34677888888888887765 44556665555555566777788887887777 4577888888888889999999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 387 YTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 387 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
.-.++++. ..| +...+..+...+...|.-.+++.+.+.+..+.++.|.+...+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 88888886 555 4555666666666666656688888888888888886544333
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00065 Score=58.77 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=107.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHG 310 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 310 (514)
..+-..+...|+-+....+........ ..+......++....+.|++..|...|.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 445555666666666666655543322 23445555677777888888888888887765 56778888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
+++.|..-|.+..+. .|+ ...++.+.-.+.-.|+.+.|..++...... -.-|..+-..+.......|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888887773 333 455666666677778888888888877752 233566667777777788888888877
Q ss_pred HHhCC
Q 046312 390 IMNMP 394 (514)
Q Consensus 390 ~~~~~ 394 (514)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76554
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00019 Score=73.59 Aligned_cols=160 Identities=12% Similarity=0.006 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYH 371 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 371 (514)
.++..+..|.....+.|++++|..+++...+ +.|+. .....+..++.+.+++++|....++.... .|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 3477788888888889999999999998887 46664 45666778888889999999988888853 555 55566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.+..++.+.|++++|.++|+++. ..|+ ..++..+...+...|+ .++|..+++.+.+...+....|..++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~~~~~------ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHHHHHH------
Confidence 77778888999999999998886 3444 6788888888888899 99999999988887765554444222
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 046312 450 GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (514)
++...-..+++++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 230 VDLNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHHHcCcccc
Confidence 344555566666654433
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.00019 Score=61.99 Aligned_cols=150 Identities=9% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL 383 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 383 (514)
..+...|+-+....+....... ..-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+.|++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 3344444444444444443221 112222333344444455555555555555543 3344455555555555555555
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 384 KEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 384 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++|..-+.+.. ...+...++.+.-.+.-.|+ .+.|+..+.......+.+..+-..|..+....|++++|..+.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555554443 22233444444445555555 555555555555544444444445555555555555555443
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.1e-06 Score=50.68 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE 129 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 129 (514)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=0.00026 Score=61.05 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
-.|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.|...|..+...|...|+++.|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666665544433322211 01112455566666666655542 3445566666677777777777777
Q ss_pred HHHHHHHhhCCCC-chHHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046312 353 YFHEMEHVHGIKP-MRIHYHTMADIL-ARAGH--LKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 353 ~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~ 426 (514)
.|++..+. .| +...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|+ +++|...++
T Consensus 95 a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~ 168 (198)
T PRK10370 95 AYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ 168 (198)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 77777643 33 355555666543 45565 477777777765 333 45666666677777777 777777777
Q ss_pred HHHhcCCCCCc
Q 046312 427 RLLELEPRGSQ 437 (514)
Q Consensus 427 ~~~~~~p~~~~ 437 (514)
++.+..|.+.+
T Consensus 169 ~aL~l~~~~~~ 179 (198)
T PRK10370 169 KVLDLNSPRVN 179 (198)
T ss_pred HHHhhCCCCcc
Confidence 77777665543
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=8.9e-05 Score=70.16 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 345 (514)
.....|+..+...++++.|+++|+++.+.++.....++..+...++-.+|.+++.+.+... +-+...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445677777788899999999999988777777778888888899999999999998642 335556666667788999
Q ss_pred cHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 346 MVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+++.|..+.+++... .|+ ..+|..|..+|.+.|++++|+..++.++
T Consensus 249 ~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999853 666 6699999999999999999999999998
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00046 Score=70.78 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 046312 92 SVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNL 170 (514)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (514)
.++..+-.|..+..+.|++++|..+++...+. .||.. ....+..++.+.+++++|....++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 34667778888888888888888888888774 56554 56667778888888888888888887764 3355666777
Q ss_pred HHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVL 237 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 237 (514)
..++.+.|++++|..+|+++..+ +..++..+..++.+.|+.++|...|++..+.- .|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888533 25577777777888888888888888877652 34445554443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=2.9e-06 Score=49.62 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.7e-06 Score=49.07 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD 229 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 229 (514)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.1e-06 Score=48.21 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=5.6e-05 Score=61.05 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
....+...+.+.|++++|.+.|+.+. .+.+...+..+...+...|+ ++.|...++.+.+.+|+++..+..++.+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE---YEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34445555666666666666666653 22244555556666666666 66666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 046312 447 AEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~ 465 (514)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6777777777766666554
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=5.9e-05 Score=71.33 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=62.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555666666666655542 32 23335555555555556666665555432 2233444444455556666
Q ss_pred HHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 180 KRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 180 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
++.|..+.++..+ | +..+|..|..+|.+.|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666665521 2 3446666666666666666666665554
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.014 Score=59.25 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
.|++.+.+.++.....+.+--+ +.|+...++-.-. + =.++..|.--|-+..|+++|+.|-
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LL-E~glt~s~hnf~~----K-LlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLL-ENGLTKSPHNFQT----K-LLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHH-HHHhhcCCccHHH----H-HHHHHHHHHhcCChhHHHHHHhcc
Confidence 6778888888876333322221 3343322221100 0 024566666788888888887653
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00011 Score=59.07 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...-.+..-+...|++++|..+|+-.. ..| +...|..|.-.+...|+ +++|...+..+..++|+++.++..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~---~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH---WGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344456666778999999999999886 344 66778889999999999 9999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 046312 446 YAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999887543
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0054 Score=52.87 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|+++|+...+.+ +-|.+++..-+...-..|+--+|.+-+....+.- ..|...|.-+.+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344455555555544443 3333444444444444444444444444444432 23555555555555555555555555
Q ss_pred HHhcC--cC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 046312 288 FSRME--EI-NVWTWSAMILGLAQHG---YAEEALELFSNMKN 324 (514)
Q Consensus 288 ~~~~~--~~-~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~ 324 (514)
++++. +| +...+..+...+.-.| +.+-+..+|.+.++
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 22 2333333333332222 34455666666555
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00045 Score=56.41 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 379 (514)
+...+...|++++|...|+........|+ ......+...+...|++++|...++.... -......+....+.|.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHH
Confidence 34455666666666666666666542222 12233345556666666666666655332 12233345555666666
Q ss_pred cCCHHHHHHHHHh
Q 046312 380 AGHLKEAYTFIMN 392 (514)
Q Consensus 380 ~g~~~~A~~~~~~ 392 (514)
.|++++|...|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.0012 Score=54.00 Aligned_cols=122 Identities=10% Similarity=-0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHH
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPD---ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN--CQLGTALI 272 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li 272 (514)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3556666666666665542 111 12222233445556666666666666665542222 11223344
Q ss_pred HHHHhcCCHHHHHHHHHhcCcC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEI--NVWTWSAMILGLAQHGYAEEALELFSN 321 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 321 (514)
..+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555443321 223333444455555555555555543
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00045 Score=55.72 Aligned_cols=98 Identities=7% Similarity=-0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
...+...+...|++++|...++.+... -+.+...+..+...+.+.|++++|...+++.. .+.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 344445555566666666666665542 12244555556666666666666666665553 22234555555556666
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|+ .+.|...++.+.+..|++.
T Consensus 98 ~g~---~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 98 LGE---PESALKALDLAIEICGENP 119 (135)
T ss_pred cCC---HHHHHHHHHHHHHhccccc
Confidence 666 6666666666666666554
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.85 E-value=0.0002 Score=68.06 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=105.1
Q ss_pred HhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 53 VSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-----PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 53 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
.++..-+......+++.+. ...+++++..++-+....|+ +.+..++|+.|.+.|..+.++.+++.=...|+=|
T Consensus 59 ~~~~~vS~~dld~fvn~~~--~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~ 136 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVE--SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP 136 (429)
T ss_pred hcCCCCcHHHHHHHHhhcC--CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC
Confidence 3455667788889999998 88899999999988864332 2466799999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcC
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 177 (514)
|..+++.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 137 D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 137 DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999998888777777777767776666
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.3e-05 Score=44.57 Aligned_cols=31 Identities=42% Similarity=0.683 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI 125 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 125 (514)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00092 Score=59.40 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
+-|...|..|...|...|+.+.|..-|.+.. ..++...+..+..++....+.....++.++++++...+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4568899999999999999999999999885 44577888888888887777777899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVGLKKMK 471 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 471 (514)
|+..+...|++.+|...|+.|.+......+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654443
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.032 Score=51.83 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
.+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888887777778888888888888888888876665432 12336677788888888888
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+|..+...+. +..-+..|.++|++.+|.+.-.+..
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88877766522 2345667778888888877766655
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00029 Score=52.33 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+...|++++|...++++. ..| +...+..+...+...++ ++.|.+.++.+.+..|.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4456667777888888888887764 333 34566667777777788 888888888888888887777888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 046312 448 EVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~ 465 (514)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 888988888888877643
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.78 E-value=0.00056 Score=50.98 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhhCCCCchH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSI-SPNYVTFLGVLCACNHAG--------MVEDGYRYFHEMEHVHGIKPMRI 368 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~ 368 (514)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344556677777999999999999999999 899999999998877653 355678899999986 8999999
Q ss_pred HHHHHHHHHHh
Q 046312 369 HYHTMADILAR 379 (514)
Q Consensus 369 ~~~~li~~~~~ 379 (514)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.7e-05 Score=43.68 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.0007 Score=50.47 Aligned_cols=80 Identities=16% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGF-EPDETTMLVVLSACTELG--------NLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
-...|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999887643 244567889999999999999999
Q ss_pred HHHHHHHHh
Q 046312 269 TALIDMYAK 277 (514)
Q Consensus 269 ~~li~~~~~ 277 (514)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.00067 Score=53.15 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHH
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIV 442 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 442 (514)
..++..+.+.|++++|.+.|+++. ..|+ ...+..+...+...|+ ++.|...++.+....|++ +.++..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK---YADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 334444555555555555555543 1222 2233444555555555 555555555555555443 2334455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 046312 443 ANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666555544
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.048 Score=50.62 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI 411 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (514)
.+.+.-+.-|...|+...|.++-.+. ++ |+...|...+.+|+..|+|++..++... . -.+..|..++..|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K--KSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--CCCCChHHHHHHHHH
Confidence 34555566677788888776664443 44 8899999999999999999998887654 2 345889999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.|+ ..+|..++.+ + .+..-+..|.++|.+.+|.+.--+.+
T Consensus 250 ~~~---~~eA~~yI~k---~------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGN---KKEASKYIPK---I------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCC---HHHHHHHHHh---C------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999 6666666665 1 12567888899999999988755544
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0012 Score=51.70 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSIS-P-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 375 (514)
+..+...+.+.|++++|...|..+...... + ....+..+..++...|+++.|...++.+...+.-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443110 0 022333344455555555555555555543211111 1223344444
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 046312 376 ILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~ 393 (514)
++.+.|+.++|...++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHhCChHHHHHHHHHH
Confidence 444555555555555444
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00072 Score=64.44 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=64.3
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccCC-C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMCE-R-----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV 236 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 236 (514)
+......+++.+....+++.+..++.+... + -..+..++|+.|.+.|..+.++.+++.=...|+-||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 333444444444444445555554444411 1 1123346666666666666666666666666666666666666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 237 LSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 237 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
|..+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666665555555554444444433
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00033 Score=51.01 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=53.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHH
Q 046312 309 HGYAEEALELFSNMKNSSIS-PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 386 (514)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.... .+ +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~----~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL----DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH----HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888875331 2344455577888888888888888877222 22 234444557788888888888
Q ss_pred HHHHHh
Q 046312 387 YTFIMN 392 (514)
Q Consensus 387 ~~~~~~ 392 (514)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 161
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.57 E-value=0.073 Score=50.04 Aligned_cols=372 Identities=10% Similarity=0.068 Sum_probs=209.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHH
Q 046312 45 YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP---IPWNNLIRGYAWSDRPREAVWVFIDMK 121 (514)
Q Consensus 45 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 121 (514)
.++.+.+++ -+.|..+|-.||+.|. ..|..++.++.++++. .|-+ .+|..-|++-....++.....+|.+..
T Consensus 29 lrLRerIkd--NPtnI~S~fqLiq~~~--tq~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 29 LRLRERIKD--NPTNILSYFQLIQYLE--TQESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHhhc--CchhHHHHHHHHHHHh--hhhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 355554443 3457899999999999 9999999999999998 6655 468888888888889999999999987
Q ss_pred HcCCCCCcchHHHHHHHHhccCCch--HH----HHHHHHHH-HhCCCCC-cchHHHHHHHHH---cC------CCHHHHH
Q 046312 122 RRGIKPTEFTYPFVLKACAEISGLN--EG----MQVQANVT-KSGLDSD-VYTNNNLVRFYG---SC------RRKRDAC 184 (514)
Q Consensus 122 ~~~~~p~~~~~~~ll~~~~~~g~~~--~a----~~~~~~~~-~~~~~~~-~~~~~~li~~~~---~~------~~~~~A~ 184 (514)
...+ +...|..-+..-.+.+..- ++ -+.++-.. ..++.|- ...|+..+..+- .. .++|...
T Consensus 104 ~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7644 3444555554433332111 11 11222211 2334442 233443333221 11 2233444
Q ss_pred HHhhccCC-C--C---------------------------hhhHH----------HHHHHHHhCC---------------
Q 046312 185 KVFDDMCE-R--S---------------------------VVSWN----------VIITVCVENL--------------- 209 (514)
Q Consensus 185 ~~~~~~~~-~--~---------------------------~~~~~----------~li~~~~~~~--------------- 209 (514)
+.+.++.. | + ...|- .+.+++....
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 44444411 1 0 00010 0111110000
Q ss_pred -------------------C--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 046312 210 -------------------W--LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 210 -------------------~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
+ .+...-++++.... +.-....|.---..+...++-+.|.+........ .|+ ..
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~ 336 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LT 336 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hh
Confidence 0 00111111111111 1112222222223344566666666655443322 222 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc---------------------------------CCHHHHHHHHHHHHHcCChHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE---------------------------------INVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~~~~~~a 315 (514)
--+...|.-..+-+.....|++..+ .-...|...+..-.+..-.+.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 2233333334444444333333210 1224566677777788888899
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 046312 316 LELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY-HTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 316 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..+|-+..+.| +.++...+++++..++ .|+...|..+|+--... -||...| +..+..+.+.++-+.|..+|+..
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 99999998888 6677888888888665 47888888888876654 3554443 45666777888889999999865
Q ss_pred C--CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 394 P--FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 394 ~--~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
. +..+ ...|..+|.--..-|+ +..+-.+-+.+.+.-|..
T Consensus 493 v~r~~~~q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VERLEKTQLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcCcH
Confidence 4 2223 4678888888888888 777777777777776654
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=6.1e-05 Score=54.90 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+..++...|+ +++|..+++. .+.++.+......++.+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~---y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGK---YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTH---HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444444444 4444444444 333333333444556666666666666666554
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0037 Score=57.26 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
.+|..+|...-+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777787778888888888888887543 2222333333333 333467777888888888754 556667778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 376 ILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.+.+.|+.+.|..+|++.. .-|.. ..|...+.--.+.|+ ++...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhh
Confidence 8888888888888888875 22333 478888888888888 888888888887776663
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0035 Score=57.78 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=112.9
Q ss_pred HHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhhCCCCchHHHH--
Q 046312 297 WTWSAM-ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC--ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-- 371 (514)
Q Consensus 297 ~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-- 371 (514)
..|..+ ..++...|++++|..+--..++.. ++ ..+...++ ++.-.++.+.+...|++.. .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 444443 235667788888888777766532 21 22233332 3445677888888888776 3456543221
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 372 -----------TMADILARAGHLKEAYTFIMNMP------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 372 -----------~li~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.=..-..+.|++..|.+.+.+.. .+|+...|.....+..+.|+ ..+|....+.+.++++.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH
Confidence 11233457899999999998874 45566777777778888999 99999999999999988
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
-..+|..-++++...++|++|.+.+++..+..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888889999999999999988876443
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.013 Score=53.83 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 046312 270 ALIDMYAKC-GAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-----PNYV-T 333 (514)
Q Consensus 270 ~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~ 333 (514)
.+...|... |++++|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....... .+.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555555442 11 123344455555666666666666655443211 1111 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
|...+-++...|+...|...+++..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222223444455555655555554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0035 Score=57.46 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA-CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 2233334333333 23356677788888888876 34567777888888
Q ss_pred HHhcCCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
+.+.|+.+.|..+|++... + ....|...+.--.+.|+.+.+..+.+++.+. -|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 8888888888888888765 2 2357888888888888888888888877763 34433343343
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00057 Score=64.93 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=85.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDA 414 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 414 (514)
...+...|+++.|...|+++.+. .| +...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45566789999999999999864 44 46678888889999999999999999986 444 57788888899999999
Q ss_pred CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 415 KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
++.|...++.+.+++|+++.+...+..+..+
T Consensus 86 ---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 ---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988766655544333
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0061 Score=60.70 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 046312 294 INVWTWSAMILGLAQ--HG---YAEEALELFSNMKNSSISPNY-VTFLGVLCACNHA--------GMVEDGYRYFHEMEH 359 (514)
Q Consensus 294 ~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 359 (514)
.+...|...+.+... .+ +...|..+|++.++. .|+. ..|..+..++... .++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456666666665432 22 255677777777763 4552 3333332222111 112222222222221
Q ss_pred hhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 360 VHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 360 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
......+...|..+.......|++++|...++++. ..|+...|..+...+...|+ .++|.+.++++.+++|..+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 10112233445555444445566666666666654 45555666666666666666 6666666666666666554
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.00048 Score=60.79 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKY 416 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~ 416 (514)
-..+.+++.+|...|.+.++ +.| |.+.|..-..+|.+.|.++.|.+-.+... +.|. ..+|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-- 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-- 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence 45678899999999999985 355 46777778889999999999998888775 5554 5889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHH
Q 046312 417 QDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWE 453 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (514)
+++|.++++++++++|++......|-.+--+.+...
T Consensus 165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998754445544444444433
No 170
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.17 Score=50.79 Aligned_cols=327 Identities=11% Similarity=0.030 Sum_probs=181.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL---NEGMQVQANVTKSGLDSDVYTNNNLVRFYG 175 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 175 (514)
.+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+. +.+..+-+++. ... .....|..+...-.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHHH
Confidence 46777777888888888877764321111 34555555555555322 22222322222 112 33456777777778
Q ss_pred cCCCHHHHHHHhhccCCC--------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 176 SCRRKRDACKVFDDMCER--------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
.+|+++-|..+++.=+.. +..-+...+.-+.+.|+.+-...++-.+.+. .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 889999998887654221 2223444555566667777666666666543 1222222222 2334
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc------CcCCHHHHHHHHHHHHHcCC----------
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM------EEINVWTWSAMILGLAQHGY---------- 311 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~~~---------- 311 (514)
.|..+|.+..+..-. ..+-+.|-...+...+-.+.-+- .++-..........+.+...
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455555555443211 11222222222222211111111 01111122222333333322
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 046312 312 AEEALELFSNMKN-SSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFI 390 (514)
Q Consensus 312 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (514)
..+-+.+.+.+.. .|......+.+--+.-+...|+-.+|.++-.+.+ -||...|-.-+.+++..++|++.+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122223333322 2333444455555566677888888887766554 588888988899999999999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 391 MNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 391 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+... .+..|.-++.+|.+.|+ .++|.+.+.+. .+ +.-...+|.+.|++.+|.+.--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n---~~EA~KYiprv---~~-----l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGN---KDEAKKYIPRV---GG-----LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHhccc---HHHHhhhhhcc---CC-----hHHHHHHHHHhccHHHHHHHHHHh
Confidence 8876 25678889999999999 66666655543 22 226888999999999988775443
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00042 Score=48.18 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG-MWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 464 (514)
++.+|..+...+...|+ +++|...++++.+++|+++.++..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD---YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999 999999999999999999999999999999999 79999999998765
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0022 Score=54.07 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
.+..+...+...|++++|...|++.. ..|+ ...+..+...+...|+ ++.|...++.+.+..|++...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE---HDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34444555555566666666655543 1121 2445555556666666 66666666666666666665666666
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHhCC
Q 046312 444 NKYAEVGM--------------WEKVSNVRRFMKNVG 466 (514)
Q Consensus 444 ~~~~~~g~--------------~~~A~~~~~~m~~~~ 466 (514)
.+|...|+ +++|.+++++....+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666555 455666666655433
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0023 Score=47.24 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
+..+...+...|++++|..++++..+.. +.+...+..+..++...|+++.|...++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556666777788888888887777642 223355666666777777777777777777653 2233346666677777
Q ss_pred hcCCHHHHHHHHHhC
Q 046312 379 RAGHLKEAYTFIMNM 393 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~ 393 (514)
..|++++|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 777777777777654
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.002 Score=54.43 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------ChHHH
Q 046312 191 CERSVVSWNVIITVCVE-----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG----------------NLSLG 249 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a 249 (514)
..++-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.. +-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34556666666666654 3566666777788888888888888888888765422 34567
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
.+++++|...|+-||..++..+++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888888876654
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.0005 Score=47.12 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+...+...|+ ++.|.+.++.+.+..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~---~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGD---YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTH---HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4456778888 9999999999999999988889999999999999999999999887543
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.36 E-value=0.0038 Score=59.35 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=83.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA 380 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 380 (514)
-...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|...++++... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778999999999999999853 334667888888999999999999999999864 45 467788889999999
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 046312 381 GHLKEAYTFIMNMP-FQPNPIVLRALLSA 408 (514)
Q Consensus 381 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 408 (514)
|++++|...|++.. ..|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999986 66765555444433
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.0066 Score=55.87 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=11.6
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 046312 100 LIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m 120 (514)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 334555566666666666654
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0025 Score=53.55 Aligned_cols=94 Identities=16% Similarity=-0.000 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
....|..+...+...|++++|...|++.. ..|+ ..++..+...+...|+ .++|...++.+.++.|.....+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHH
Confidence 35556667777777888888888887774 2222 3467777788888888 88888888888888888777777
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHHH
Q 046312 441 IVANKYA-------EVGMWEKVSNVRRFM 462 (514)
Q Consensus 441 ~l~~~~~-------~~g~~~~A~~~~~~m 462 (514)
.++.+|. +.|++++|...+++.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777777 778887666665544
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0081 Score=50.67 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455555556666666666666666654322221 234555556666666666666666666654322 3444445555
Q ss_pred HHHhcCCHHH
Q 046312 274 MYAKCGAVGC 283 (514)
Q Consensus 274 ~~~~~g~~~~ 283 (514)
+|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.034 Score=54.49 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHHHhccCCchHHH--HHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCC
Q 046312 132 YPFVLKACAEISGLNEGM--QVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENL 209 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 209 (514)
++..=++|.+.++..--. .-++++.+.|-.|+... +...++-.|.+.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 444445555555544322 33456667776676543 44567778888888887754 45
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
.-..|+++|..|+-- -...-+...|..++-..+.+.-.+.. -+..--.+..+.+...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh--
Confidence 556666666655421 01122223333333333222211111 0111112334555566776666654
Q ss_pred hcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 290 RMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+|-.+-+.++-+++-. .+..+...+...+.+...+..|-++|.+|-+.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 3344444555555444432 23445555555566667777788888877642
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPNP 399 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 399 (514)
.++++.....++|++|..+-++.+ ..||+
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCccccccc
Confidence 346677778888888888888887 44554
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.045 Score=45.06 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSA 301 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 301 (514)
.|+...-..|..++.+.|+..+|...|++....-+.-|..+...+.++....+++..|..+++++.+ ..+...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555555556666666666666666555544444555555555555555555555555555443 11223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+...+...|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555554
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.32 E-value=0.0091 Score=59.46 Aligned_cols=135 Identities=12% Similarity=0.040 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhc--------CCHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHA-----GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARA--------GHLKEAYTFIM 391 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 391 (514)
+.+.+...|...+++.... ++...|..+|++..+. .|+ ...|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4567778888888775432 3477899999999865 787 44455444433321 22345555555
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 392 NMP----FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 392 ~~~----~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+.. ...+...|.++.-.....|+ +++|...++++.+++|+ ...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~---~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGK---TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 532 33455778777777777899 99999999999999995 77899999999999999999999999987654
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.097 Score=45.64 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH----
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTAL---- 271 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 271 (514)
...+.+++.+.-.|.+.-.+..+++.++...+.+......+.+...+.||.+.|...++...+..-..+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666777777888888888888888765667777777888888888888888888877765433343333333
Q ss_pred -HHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 272 -IDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 272 -i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
...|.-.+++..|...|.++.. .++..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677777777777664 34444454444455567778888888887764
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.18 Score=50.14 Aligned_cols=338 Identities=18% Similarity=0.125 Sum_probs=169.6
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH------------HHHHHHHhCCCchHHHHHHHHHHHcC
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN------------NLIRGYAWSDRPREAVWVFIDMKRRG 124 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~ 124 (514)
.|.+..|..|...-. ..-.++.|...|-+...-+.+..-. +=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al--~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL--FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHH--HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 478888888877666 6777888888877765333331111 112222 477888888877765543
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHH
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD----VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNV 200 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 200 (514)
+ .+....+.|++-.+.++++.- |-..| ...++.+...++....+++|.+.+..-.. -..
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~ 827 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TEN 827 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 2 344555666666665555321 11111 24566666666666667777666654311 112
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
.+.++.+..++++-..+-.. ++.+....-.+...+...|.-++|.+.+-. .+.+ .+.+..+...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHH
Confidence 34444444444443333222 233444555566666666666666554422 2211 234555666667
Q ss_pred HHHHHHHHHhcCcCCHHHHH--------------HHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH-
Q 046312 281 VGCARLLFSRMEEINVWTWS--------------AMILGLAQHGYAEEALELFSNMKN----SSISPNYVTFLGVLCAC- 341 (514)
Q Consensus 281 ~~~A~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~~- 341 (514)
|.+|.++-+...-|.+.+.- --|..+.+.|+.-.|-+++.+|.+ ++.++-..--..++.++
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL 973 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL 973 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH
Confidence 77777666655444333221 123445556666666666666644 23333321111111111
Q ss_pred --------------hccCcHHHHHHHHHHHHHhh------CCCCchHHHH--HHHHHHHhcCCHHHHHHHHHhCC----C
Q 046312 342 --------------NHAGMVEDGYRYFHEMEHVH------GIKPMRIHYH--TMADILARAGHLKEAYTFIMNMP----F 395 (514)
Q Consensus 342 --------------~~~~~~~~a~~~~~~~~~~~------~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~----~ 395 (514)
...|..++|..+++...-.. +.-.....|. .|.+--...|..+.|+..--.+. +
T Consensus 974 vE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~ 1053 (1189)
T KOG2041|consen 974 VENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDF 1053 (1189)
T ss_pred HHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhc
Confidence 11244444444333322110 0111222333 33344455677777766543332 4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
-|...+|..|.-+.+.... +..-.+++-++....
T Consensus 1054 lpP~eiySllALaaca~ra---FGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1054 LPPAEIYSLLALAACAVRA---FGTCSKAFMKLEAFE 1087 (1189)
T ss_pred CCHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHhhh
Confidence 4566667666655555555 555555555554433
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.27 E-value=0.13 Score=46.04 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=36.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETT---MLVVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
.....+.+.|++++|.+.|+++...-..+ ... ...+..++.+.++++.|...+++.++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 33444556777777777777777652221 111 13345566677777777777777776643
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0044 Score=52.46 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred HHHHHhc--CcCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 046312 285 RLLFSRM--EEINVWTWSAMILGLAQ-----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA------------- 344 (514)
Q Consensus 285 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 344 (514)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34667777777777764 467777888889999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 345 ---GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 345 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
.+.+-|.+++++|... |+-||.+++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 2346677888888774 88888888888888776554
No 187
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.22 E-value=0.058 Score=41.64 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=90.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+.-.|.+++..++..+...+ .+..-++.+|.-....-+=+...++++.+-+.|.+.+ +|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHH
Confidence 45678889999999888763 4667788888777776666777777777765433332 344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 386 AYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
...-+-.+. .+.......+......|. -+...++...+.+-+..++.....++.+|.+.|+..++.+++++..++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~k---kDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGK---KDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT----HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhcc---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444443333 244455566777888888 777777777776544455778889999999999999999999999999
Q ss_pred CCC
Q 046312 466 GLK 468 (514)
Q Consensus 466 ~~~ 468 (514)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 974
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.21 E-value=0.0065 Score=49.24 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 373 MADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
..--+-..|++++|..+|.-+- ..-+..-+..|..++...++ ++.|...+..+.-++++++.++...+.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~---y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ---FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444567899999999998875 33456667788888888999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 046312 451 MWEKVSNVRRFMKN 464 (514)
Q Consensus 451 ~~~~A~~~~~~m~~ 464 (514)
+.+.|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.3 Score=49.11 Aligned_cols=337 Identities=13% Similarity=0.032 Sum_probs=184.2
Q ss_pred HcCCCCCcchHHH-----HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC---CHHHHHHHhhccCC-
Q 046312 122 RRGIKPTEFTYPF-----VLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR---RKRDACKVFDDMCE- 192 (514)
Q Consensus 122 ~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~- 192 (514)
.-|++.+..-|.. +++-+...+.+..|.++-..+...-.. ...+|......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555543 456667778888888887766422111 1456666666666653 22334444444433
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 046312 193 -RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE----PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQL 267 (514)
Q Consensus 193 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 267 (514)
-...+|..+.+-....|+.+-|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-.+...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 35567777777777888888887776542111100 011122333444555555555555554443321 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHH--HHHH----HCCCCCCHHHHHHHHHH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELF--SNMK----NSSISPNYVTFLGVLCA 340 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~--~~m~----~~g~~p~~~~~~~ll~~ 340 (514)
.+....+...|..+|....+ .|..+ +-..| +.++-.++..-| +... ..|..|+..+ ...+
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 11111122233333333222 11111 01111 222222222211 1100 1233344332 3333
Q ss_pred HhccCc----------HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 341 CNHAGM----------VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 341 ~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
|.+... ..+-+.+.+.+..++|..-...+.+--+..+...|+..+|.++-.+.+ -||-..|..=+.++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALA 726 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 433322 223344555555555654444556666777888999999999999998 578888888888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEeccc
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYD 490 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
..++ .+++.+.+....+ |-.|.....+|.+.|+.++|.+++-+....- ..+.+|.
T Consensus 727 ~~~k------weeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~-----------------ekv~ay~ 781 (829)
T KOG2280|consen 727 DIKK------WEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ-----------------EKVKAYL 781 (829)
T ss_pred hhhh------HHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCChH-----------------HHHHHHH
Confidence 8888 6666666666664 4568999999999999999999988764321 2345567
Q ss_pred CCcChHHHHHH
Q 046312 491 SQVELAGIYQI 501 (514)
Q Consensus 491 ~~~~~~~a~~~ 501 (514)
+.|.+.+|.++
T Consensus 782 ~~~~~~eAad~ 792 (829)
T KOG2280|consen 782 RVGDVKEAADL 792 (829)
T ss_pred HhccHHHHHHH
Confidence 77777777654
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.019 Score=44.55 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=60.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYA 276 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 276 (514)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......... +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667788888888888777765544 2345556666777777777777777776653220 1122222233455
Q ss_pred hcCCHHHHHHHHHhcCcCCHHHHHHHHHHH
Q 046312 277 KCGAVGCARLLFSRMEEINVWTWSAMILGL 306 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 306 (514)
..|+.++|.+.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665544444433444444433
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.20 E-value=0.04 Score=45.32 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 046312 327 ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI-KPMRIHYHTMADILARAGHLKEAYTFIMNMP------FQPNP 399 (514)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~~ 399 (514)
..|+...-..|..+..+.|+..+|...|++... |+ .-|......+.++....+++.+|...++++. ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777888888888888888888876 44 4556677778888888888888888888763 23333
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.-.+...+...|. ...|+..++.+..--|. +.........+.+.|+.++|..-+..+.+
T Consensus 163 --~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTLAAQGK---YADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHHHhcCC---chhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3346677788888 88888888888888776 55666777788888888777766555543
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.023 Score=45.85 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
....+...+...|++++|..+|+.+.. .+..-|..|..++-..|++++|+..|....... +-|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334455566677888888888877664 345667777777888888888888888887754 2445667777778888
Q ss_pred cCcHHHHHHHHHHHHHhhCCCC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKP 365 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p 365 (514)
.|+.+.|.+-|+......+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 8888888888888776544333
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.048 Score=50.65 Aligned_cols=152 Identities=11% Similarity=-0.054 Sum_probs=85.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHH---------------HHHHHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVW---------------TWSAMI 303 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 303 (514)
++...|+.++|.++-..+++.... +......-..++.-.++.+.|...|++....++. .|..=.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 344566666666665555554311 2222111222334456677777777776652221 122223
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHh
Q 046312 304 LGLAQHGYAEEALELFSNMKNS---SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILAR 379 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 379 (514)
.-..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.+. ...|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3456778888888888887763 244555566666667777788888877666655 23333 2233333445556
Q ss_pred cCCHHHHHHHHHhCC
Q 046312 380 AGHLKEAYTFIMNMP 394 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~ 394 (514)
.++|++|.+-+++..
T Consensus 334 le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777776653
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.079 Score=47.34 Aligned_cols=54 Identities=13% Similarity=-0.096 Sum_probs=33.7
Q ss_pred HHHHHcCCCHHHHHHHhhccCC--CCh-hh---HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE--RSV-VS---WNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
...+...|++++|.+.|+++.. |+. .. .-.++.++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556777777777777622 221 11 223456677788888888888888775
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0052 Score=54.44 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=83.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAG 381 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 381 (514)
.-+.+.+++.+|+..|.+.++. .| |.+.|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3467889999999999999984 44 56667788899999999999998887777 44676 678999999999999
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 046312 382 HLKEAYTFIMNMP-FQPNPIVLRALLSA 408 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 408 (514)
++++|.+.|++.. +.|+-.+|..=+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 88887777655444
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.07 E-value=0.0023 Score=45.02 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..+...++ ++.|.++++.+.+++|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQED---YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCC---HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677788 89999999999999999888888999999999999999999998876554
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.028 Score=43.60 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=71.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMAD 375 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 375 (514)
+..++-..|+.++|+.+|++....|.... ...+-.+...+-..|++++|..++++....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 44566778899999999999988876655 3345666778888899999999998888752 33 222223344
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 376 ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
++...|+.++|++.+-... .++...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6778899999988876543 233335555554443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0031 Score=43.57 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRAL 405 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 405 (514)
..|++++|..+|+++... .| +...+..+..+|.+.|++++|.++++++. ..|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 33 45555566777777777777777777775 55554444433
No 199
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.0088 Score=50.22 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT--EFTYPFVLKACAEISGLNEGMQVQANVTKS 158 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 158 (514)
.|..+...+...|++++|+..|++.......+. ..++..+...+...|+.++|...+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555556666666666666554321111 124555555666666666666666665544
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0009 Score=46.34 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=42.6
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+ ++.|.+.++.+.+..|++..++..++.+|.+.|++++|.++++++....
T Consensus 3 ~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGD---YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566 8888888888888888888888888888888888888888888776544
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.00 E-value=0.0055 Score=56.48 Aligned_cols=128 Identities=9% Similarity=-0.045 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------CCHH
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIE----RGT-VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---------INVW 297 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~ 297 (514)
.|..|-+.|.-.|+++.|....++-+. -|- ......+..+.+++.-.|+++.|.+.|+.... ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666677889988877665332 221 11245667788888889999999988876431 2234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN----S-SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+..+|...|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555677777777788888888766432 1 1223456788888888888888888877666554
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.99 E-value=0.3 Score=45.29 Aligned_cols=242 Identities=13% Similarity=0.036 Sum_probs=146.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDET--TMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 284 (514)
-.|+++.|.+-|+.|... |... ....|.-..-+.|+.+.|.++-+..-..-.. -.-...+.++..|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356666666666666542 2211 1112222234556666666665555443321 233455666777777777777
Q ss_pred HHHHHhcCc-----CCHHH--HHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHH
Q 046312 285 RLLFSRMEE-----INVWT--WSAMILGL---AQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 285 ~~~~~~~~~-----~~~~~--~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~ 353 (514)
+++++.-.. +++.- -..|+.+- .-..+...|...-.+..+ +.||..- -.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 777765432 33211 11122111 112345556555555544 5666432 23345778899999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH--H--HHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEA--Y--TFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
++.+-+. .|....+..++ +.+.|+.... . +-+..|+ +.+..+...+..+....|+ +..+..--+.+.
T Consensus 286 lE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e---~~~ARa~Aeaa~ 356 (531)
T COG3898 286 LETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGE---FSAARAKAEAAA 356 (531)
T ss_pred HHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccc---hHHHHHHHHHHh
Confidence 9999865 56655554433 4466653221 1 1233333 3456777788889999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046312 430 ELEPRGSQNLVIVANKYAEV-GMWEKVSNVRRFMKN 464 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 464 (514)
++.|.. .+|..|.+.-... |+-.++...+-+...
T Consensus 357 r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 REAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 999984 5788888888655 999999998877654
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.95 E-value=0.0078 Score=55.54 Aligned_cols=129 Identities=10% Similarity=0.012 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH---HHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEM---EHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--------FQPNP 399 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~ 399 (514)
..|..|-..|.-.|+++.|+...+.- .+.+|-.. ....+..|..+++-.|+++.|.+.++... .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34556666666678888877655432 22223222 23456677777888888888887776542 12234
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHH----HhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRL----LELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~----~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.-+|.+.|....+ +++|..+..+- .+++ --...++.+|+.+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455567777777667 77776665543 2332 1224567788888988888888888776544
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.023 Score=49.34 Aligned_cols=128 Identities=10% Similarity=-0.037 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH-----
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLV----- 171 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 171 (514)
-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666666777777777777766555555566666666677777777777777665543344444443333
Q ss_pred HHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 172 RFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
..|.-.+++..|...+++++.. |+..-|.-.-+..-.|+...|++.++.|++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556777777777666432 3444444444444556777777777777765
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.86 E-value=0.0026 Score=43.53 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+...|++++|...|+.+.+. .+-+...+..+..++.+.|++++|...|+++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555432 1113444444455555555555555555444
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.85 E-value=0.0011 Score=38.29 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578899999999999999999999999999863
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.82 E-value=0.29 Score=42.48 Aligned_cols=177 Identities=13% Similarity=0.006 Sum_probs=83.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGF--EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
...+...|++++|.+.|+++...-. +--......+..++.+.|+++.|...++..++.-+.....-+-..+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445667777777777777776521 11123444566667777777777777777766543322222222222221111
Q ss_pred CHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046312 280 AVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 280 ~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
...... ..+.| ...+..++.-|=.+....+|...+..+.+. .-.. -..+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHH
Confidence 110000 00001 123444445555555555555555444331 0111 1124456777788888888
Q ss_pred HHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHH
Q 046312 353 YFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 353 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (514)
-++.+.+.+.-.+. ......++.+|.+.|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88887776322221 233456667777777766443
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.012 Score=53.06 Aligned_cols=84 Identities=11% Similarity=0.005 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHHHHHHHhc
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIVANKYAEV 449 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 449 (514)
.+.|++++|...|+.+. ..|+. ..+..+...|...|+ ++.|...++.+.+..|++ ++++..++.+|...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~---~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK---KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 44455555555555553 22322 334445555555666 666666666666555543 23344455566666
Q ss_pred CCHHHHHHHHHHHHh
Q 046312 450 GMWEKVSNVRRFMKN 464 (514)
Q Consensus 450 g~~~~A~~~~~~m~~ 464 (514)
|+.++|.++++++.+
T Consensus 231 g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 231 GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665554
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.72 E-value=0.0047 Score=42.83 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC-CHHHHHHHHHh
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG-HLKEAYTFIMN 392 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~ 392 (514)
..+|..+...+...|++++|...|++..+. .| +...|..+..++.+.| ++++|++.+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344555555556666666666666666553 23 3445555555565665 45666555554
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.72 E-value=0.029 Score=43.99 Aligned_cols=52 Identities=6% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
...|+..+..+++.+|+..|++..|.++++.+.+.++++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888877643
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.69 E-value=0.11 Score=44.98 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=78.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCc--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 046312 273 DMYAKCGAVGCARLLFSRMEE--IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH--- 343 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 343 (514)
..+...|++.+|.+.|+.+.. |+ ....-.++.++.+.|+++.|...+++.++.-..-....+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 334455566666666655553 21 233444556666677777777777776653211111112212211111
Q ss_pred ----------cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046312 344 ----------AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHD 413 (514)
Q Consensus 344 ----------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (514)
.+....|...|+.+.+ -|=...-..+|...+..+...- ...-..+..-|.+.|
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT
T ss_pred CccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 1122233444444443 3333333444444333332000 001112445577777
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCHHHHH
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQ---NLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 456 (514)
. +..|..-++.+.+.-|+.+. +...++.+|.+.|..+.|.
T Consensus 156 ~---y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 K---YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ----HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred c---HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 7 78888888888887777542 4557888888888877544
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.55 E-value=0.31 Score=45.93 Aligned_cols=74 Identities=16% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCcC-------CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEEI-------NVWTWSAMILGLAQ---HGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
-.++-+|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455577777777777777777652 11122223344555 778888888888866655667777777766
Q ss_pred HHHh
Q 046312 339 CACN 342 (514)
Q Consensus 339 ~~~~ 342 (514)
..|.
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 6553
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.55 E-value=0.046 Score=49.29 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC
Q 046312 307 AQHGYAEEALELFSNMKNSSISPN----YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAG 381 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 381 (514)
.+.|++++|...|+.+++. .|+ ...+..+..+|...|+++.|...|+.+.+.+.-.|. ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344555555555554442 122 123334444444455555555555554443211111 222223333344444
Q ss_pred CHHHHHHHHHhC
Q 046312 382 HLKEAYTFIMNM 393 (514)
Q Consensus 382 ~~~~A~~~~~~~ 393 (514)
+.++|..+|+++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.55 E-value=0.67 Score=43.11 Aligned_cols=284 Identities=13% Similarity=0.016 Sum_probs=157.0
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCCchHHHHHHHHHHHhCCCCCcchHH---
Q 046312 96 PWNNLIRGYAW--SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKAC--AEISGLNEGMQVQANVTKSGLDSDVYTNN--- 168 (514)
Q Consensus 96 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 168 (514)
.|..|-.++.. .|+-..|.++-.+-.+. +.-|......++.+- .-.|+.+.|.+-|+.|... +.+-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhH
Confidence 35555555443 45666666665554332 445666565565543 3458888888888888642 22221
Q ss_pred -HHHHHHHcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHh
Q 046312 169 -NLVRFYGSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEPDETT--MLVVLSACT 241 (514)
Q Consensus 169 -~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t--~~~ll~~~~ 241 (514)
.|.-.--+.|+.+.|...-+.... | =.-.+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+-.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 122222456777777777666522 2 23466777888888888888888888766543 3444321 222332221
Q ss_pred c---cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHH
Q 046312 242 E---LGNLSLGKWVHLQLIERGTVLNCQ-LGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 242 ~---~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a 315 (514)
. ..+...|...-.+..+ +.|+.. .--.-..++.+.|+..++-.+++.+=+ |.+..+. +..+.+.|+ .+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta 311 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TA 311 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cH
Confidence 1 1234444444333333 233322 122334667777888887777777654 4444332 223334443 33
Q ss_pred HHHHHHHHH-CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-hcCCHHHHHHHHHh
Q 046312 316 LELFSNMKN-SSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA-RAGHLKEAYTFIMN 392 (514)
Q Consensus 316 ~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~ 392 (514)
..-+++... ..++|| ......+..+....|++..|..--+... ...|....|..|.+.-. ..|+-.++...+.+
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 333333332 124554 4455556667777777777766655554 33677777776666544 34777777777766
Q ss_pred CC
Q 046312 393 MP 394 (514)
Q Consensus 393 ~~ 394 (514)
..
T Consensus 389 av 390 (531)
T COG3898 389 AV 390 (531)
T ss_pred Hh
Confidence 64
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=0.75 Score=43.62 Aligned_cols=374 Identities=10% Similarity=0.028 Sum_probs=205.9
Q ss_pred HHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC
Q 046312 83 SILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD 161 (514)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 161 (514)
++=+++.. +.|+.+|-.||.-+..+|..++..+.+++|..- .+--...|..-+++=....++..++.+|.+.....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 45555554 456789999999999999999999999999653 333445677777777778899999999998877643
Q ss_pred CCcchHHHHHHHHHcCCC---------HHHHHHHhhcc--CC-CChhhHHHHHHHH---------HhCCChhHHHHHHHH
Q 046312 162 SDVYTNNNLVRFYGSCRR---------KRDACKVFDDM--CE-RSVVSWNVIITVC---------VENLWLGEAVGYFVK 220 (514)
Q Consensus 162 ~~~~~~~~li~~~~~~~~---------~~~A~~~~~~~--~~-~~~~~~~~li~~~---------~~~~~~~~a~~~~~~ 220 (514)
+...|...++--.+.+. +-+|.++.-.. .+ .....|+..+..+ -.+.+.+...+.|.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 45566666654444331 12232222111 12 2333444433321 112233444555555
Q ss_pred HHHCCCCC------CHHHHHHHHHHHhcc---C----ChHHHHHHHHHHH------------------------------
Q 046312 221 MKDLGFEP------DETTMLVVLSACTEL---G----NLSLGKWVHLQLI------------------------------ 257 (514)
Q Consensus 221 m~~~~~~p------~~~t~~~ll~~~~~~---g----~~~~a~~~~~~~~------------------------------ 257 (514)
|....+.- |-..|-.=++..... | -+-.|.+.++++.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 54321100 000111001000000 0 0111122222111
Q ss_pred ------HhCCCC----------------------chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Q 046312 258 ------ERGTVL----------------------NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQH 309 (514)
Q Consensus 258 ------~~~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 309 (514)
+.++.. ...+|--....+...++-++|........+..+.....+-..|--.
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 111111 1111111222334556677777776665431111111111222222
Q ss_pred CChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 310 GYAEEALELFSNMKN--------------SSI---------------SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~--------------~g~---------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
++.+.+...|+...+ .+. .--...|...+.+..+..-++.|..+|-+..+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 222222222222110 011 111234556666667778899999999999986
Q ss_pred hC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC--
Q 046312 361 HG-IKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVL-RALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-- 435 (514)
Q Consensus 361 ~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-- 435 (514)
+ +.+++..+++++..++ .|+...|..+|+--. .-||...| .-.+.-+...++ -+.|+.+++...+.-.+.
T Consensus 427 -~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 427 -GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENARALFETSVERLEKTQL 501 (660)
T ss_pred -CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHHHHHHhhh
Confidence 6 6788899999998665 688899999998754 44555443 445556677788 788888888655432111
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...|..++.--..-|+...|..+-++|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 35788999999999999988888777764
No 216
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.46 E-value=1.3 Score=45.63 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
..-+..-.+.++++.+...+..|+ ..-...-.--+..++...|+ .+.|...++.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~---~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGR---KAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 333334445556665555555554 11111222223344444555 55555555554
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.39 E-value=0.11 Score=42.27 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCchHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH----VHGIKPMRIHY 370 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~ 370 (514)
+...++..+...|++++|..+.+.+.... +-+...|..+|.++...|+...|.++|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556667778888888888888888753 44677788888888888888888888877653 35777776553
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.35 E-value=0.99 Score=42.92 Aligned_cols=411 Identities=9% Similarity=0.005 Sum_probs=223.2
Q ss_pred cChhHHHHHHHHHHHhC----CCCC-hHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-cccHHHHHHH--HHhCCCc
Q 046312 39 CSKKHLYQIHAQIQVSG----LQND-AQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-PIPWNNLIRG--YAWSDRP 110 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g----~~~~-~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~--~~~~g~~ 110 (514)
++...+..++..+.+.. +... ....+.++++|- ..+.+.....+..... .. ...|-.+..+ +.+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff---l~nld~Me~~l~~l~~-~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF---LNNLDLMEKQLMELRQ-QFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH---HhhHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhhhH
Confidence 45555666666554332 2222 455677888887 6777777766666552 22 2345555544 3467889
Q ss_pred hHHHHHHHHHHHc--CCCC------------CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC----CCcchHHHHHH
Q 046312 111 REAVWVFIDMKRR--GIKP------------TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD----SDVYTNNNLVR 172 (514)
Q Consensus 111 ~~a~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 172 (514)
++|++.+.....+ +..| |...=+..+.++...|.+.++..+++++...=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988877654 3222 1112244567788899999999999888765333 57778887666
Q ss_pred HHHcCCCHHH---------------HHHHhhccCC----------CChhhHHHHHHHHHhC--CChhHHHHHHHHHHHCC
Q 046312 173 FYGSCRRKRD---------------ACKVFDDMCE----------RSVVSWNVIITVCVEN--LWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 173 ~~~~~~~~~~---------------A~~~~~~~~~----------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~ 225 (514)
.+++.--++. +.-...+|.. |.......++....-. .+..--+++++.....-
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 6655422211 1111111111 1111111111111110 11122223333333333
Q ss_pred CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC--cCCHHH
Q 046312 226 FEPDETT-MLVVLSACTELGNLSLGKWVHLQLIERGTVL----NCQLGTALIDMYAKCGAVGCARLLFSRME--EINVWT 298 (514)
Q Consensus 226 ~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 298 (514)
+.|+... ...+...+.. +.+++..+.+.+....+.+ -..++..++....+.++..+|.+.+.-+. +|+...
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv 333 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV 333 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence 4555432 2233333333 5556655555554443211 13466677777788888888888877654 343321
Q ss_pred HH-------HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCc-HHHHHHHHHHHHHhhCC
Q 046312 299 WS-------AMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLC---ACNHAGM-VEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 299 ~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~-~~~a~~~~~~~~~~~~~ 363 (514)
-. .+-+..+. .-+...-+.+|++....++.-.. ....++. -+-+.|. -++|.++++.+.+-
T Consensus 334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--- 409 (549)
T PF07079_consen 334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--- 409 (549)
T ss_pred hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh---
Confidence 11 11122221 11234445666666654332221 1222222 2344454 78899999888752
Q ss_pred CC-chHHHHHHH----HHHHhc---CCHHHHHH---HHHhCCCCC----CHHHHHHHHHH--HHhcCCCCcchHHHHHHH
Q 046312 364 KP-MRIHYHTMA----DILARA---GHLKEAYT---FIMNMPFQP----NPIVLRALLSA--SSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 364 ~p-~~~~~~~li----~~~~~~---g~~~~A~~---~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~ 426 (514)
.+ |..+-+.+. ..|..+ ..+.+.+. ..++..+.| +...-|.|..+ +..+|+ +.++.-...
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqge---y~kc~~ys~ 486 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGE---YHKCYLYSS 486 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence 33 333333222 223221 22333322 233333333 44566667665 567889 999988888
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 427 RLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
-+.++.| ++.+|..++-+.....++++|..++..+.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8999999 58899999999999999999999999874
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.011 Score=52.65 Aligned_cols=103 Identities=14% Similarity=-0.039 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCc
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG---MWEKVSNVRRFMKNVGLKKMKG 472 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~ 472 (514)
+-|...|..|...|...|+ .+.|..++..+.++.|+++..+..++.++.... ...++..+++++..........
T Consensus 153 P~d~egW~~Lg~~ym~~~~---~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGR---ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcc---hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3478999999999999999 999999999999999999999999999886543 3678999999998765433333
Q ss_pred eeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 473 MSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.+ .+..++...|++++|...|+.|-+-.+
T Consensus 230 l~---------lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 230 LS---------LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HH---------HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 32 467789999999999999999977554
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.05 E-value=0.024 Score=39.73 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 376 ILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.|.+.+++++|.++++.+. ..| +...+......+...|+ ++.|.+.++.+.+..|+++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR---YEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCcHH
Confidence 4555566666666665554 223 33444455555566666 66666666666666665443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.97 E-value=0.023 Score=40.44 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
++..+..++...|++++|.+++++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.044 Score=52.18 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
...++.+..+|.+.|++++|+..|++.. ..|+. .+|..+..+|...|+ .++|.+.++++.+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr---~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE---GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 4456666666666666666666666643 55553 235666666666666 66666666666665
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.13 Score=40.38 Aligned_cols=96 Identities=10% Similarity=-0.115 Sum_probs=55.9
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhc--cCCCChhhHHHHHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDD--MCERSVVSWNVIITVC 205 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~ 205 (514)
|..++..+|.++++.|+++...++++..- |+.++... ..+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 34556666777777777776666665432 33222110 0000 111 1336677777777777
Q ss_pred HhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 046312 206 VENLWLGEAVGYFVKMKDL-GFEPDETTMLVVLSACT 241 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~ 241 (514)
+..|++..|+++++...+. +++.+..++..|++-+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777776554 56666777777776554
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.5 Score=46.75 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=115.0
Q ss_pred HHHHHHHHHhCCCch--HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 97 WNNLIRGYAWSDRPR--EAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 97 ~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
++..-.+|.+-.+.. +.+.-+++|+++|-.|+... +...|+-.|.+.+|-++|.+ .|.. |.-+..|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 455555666554433 44555677888887787643 34556677788888777753 3321 2334444
Q ss_pred HcCCCHHHHHHHhhccCC--------------CChhhHHHHHHHHHhCCChhHHHHHHHH------HHHCCC---CCCHH
Q 046312 175 GSCRRKRDACKVFDDMCE--------------RSVVSWNVIITVCVENLWLGEAVGYFVK------MKDLGF---EPDET 231 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~ 231 (514)
-....+|.|.+++..-.. .|+.-=.+....+...|+.++|..+.-+ +.+.+- ..+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 444445555444433210 0111111233445556666666554321 111111 22334
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHH-----------H
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVW-----------T 298 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~ 298 (514)
+...+...+.+...+..|.++|..|-.. ..+++.....++|.+|..+-++..+ +++. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 5555555555666777777777776433 3567788888899999888888776 3321 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
|...-.+|.+.|+-.+|.++++++-.
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22233567777777777777777654
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.73 E-value=0.11 Score=45.74 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=79.6
Q ss_pred HHHhhccC--CCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046312 184 CKVFDDMC--ERSVVSWNVIITVCVEN-----LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG------------ 244 (514)
Q Consensus 184 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g------------ 244 (514)
++.|.... ++|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 56777787777776543 566667777888999999999999999998875543
Q ss_pred ----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 046312 245 ----NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV-GCARLLFSRME 292 (514)
Q Consensus 245 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 292 (514)
+-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234778999999999999999999999999887753 33444444443
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.15 Score=47.57 Aligned_cols=137 Identities=13% Similarity=-0.027 Sum_probs=97.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
...|.+.|++..|..-|++.+.. +. +...-+.++.... . ..-..++..|.-++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-E--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhhh
Confidence 35677778888888777776542 00 1111111111111 1 1223356778888999999
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH-HHHHH
Q 046312 383 LKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK-VSNVR 459 (514)
Q Consensus 383 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~ 459 (514)
+.+|++.-.+.. .++|....-.=..++...++ ++.|+..++++.+++|.|-.+-..|+.+-.+.....+ ..++|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGE---YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888875 55677777777889999999 9999999999999999998888888888777766555 47888
Q ss_pred HHHHh
Q 046312 460 RFMKN 464 (514)
Q Consensus 460 ~~m~~ 464 (514)
..|-.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 88864
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.59 E-value=0.27 Score=45.09 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC--C--chHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN-SSISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK--P--MRIH 369 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~ 369 (514)
.|..+..++-+.-++.+++.+-+.-.. .|..|. .....++..+....+.++++.+.|+...+--.-. | ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555555555544433 232231 1233445566667777888888877766421111 1 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHhcC-----
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-------FQPNPIVLR-----ALLSASSIHDAKYQDGVGNEVRRRLLELE----- 432 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~-----~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----- 432 (514)
+..|...|.+..++++|..+..++. +.--..-|. .+.-++...|. +..|.+..+++.++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCC
Confidence 7778888888888888776665542 111112222 23346677777 777888877776543
Q ss_pred -CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 433 -PRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+........+++.|...|+.+.|..-|++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 112223448888898889888887777764
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.54 E-value=0.065 Score=43.71 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK-----NVGLKKMK 471 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 471 (514)
....++..+...|+ ++.+.+.++.+...+|-+...|..++.+|...|+..+|.++|++++ +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~---~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGD---YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34456667788888 9999999999999999988899999999999999999999999875 34665543
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.093 Score=47.42 Aligned_cols=159 Identities=13% Similarity=-0.043 Sum_probs=86.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHH----HHHHHhcCCH
Q 046312 308 QHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTM----ADILARAGHL 383 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 383 (514)
-.|+..+|...|+++++. .+.|...+...=.+|...|+.+.....++++.. ...+|...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456666666677776664 344555555555666667777766666666664 334554433322 2334466777
Q ss_pred HHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCHHHHHH
Q 046312 384 KEAYTFIMNMP-FQ-PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG----SQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 384 ~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
++|.+.-++.. ++ -|.-.-.++.......++ ..++.++..+-...-... ...|-..+-.+...+.++.|.+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 77777666664 22 244444555555555666 555555555433221111 1234455555666667777777
Q ss_pred HHHHHHhCCCCCCCc
Q 046312 458 VRRFMKNVGLKKMKG 472 (514)
Q Consensus 458 ~~~~m~~~~~~~~~~ 472 (514)
+|++=.-..++...+
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 776554444444433
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.47 E-value=1.6 Score=41.23 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=44.4
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCCC-------ChhhHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 169 NLVRFYGSCRRKRDACKVFDDMCER-------SVVSWNVIITVCVE---NLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238 (514)
Q Consensus 169 ~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 238 (514)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777332 11222233344555 6778888888877655555677777776665
Q ss_pred HH
Q 046312 239 AC 240 (514)
Q Consensus 239 ~~ 240 (514)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.40 E-value=0.77 Score=44.92 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHHhCCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 204 VCVENLWLGEAVGYFVKMK-DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
...-.++++++.++...-. -..+ +..-...++..+-+.|..+.|.++...- ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence 3445677777666554111 1111 1334566777777777777777764332 12345566778888
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046312 283 CARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG 362 (514)
Q Consensus 283 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 362 (514)
.|.+.-++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 8887766555 566888888888888888888888887653 455666677778877777776665543 2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 363 IKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
-++....++.-.|+.++..+++.+..
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13444445556678888888777765
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.39 E-value=0.57 Score=45.79 Aligned_cols=159 Identities=11% Similarity=-0.001 Sum_probs=100.4
Q ss_pred HHHHhCCCchHHHHHHH--HHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 102 RGYAWSDRPREAVWVFI--DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
....-.|+++++.++.+ ++.. .++ ..-.+.++..+.+.|..+.|+++... + ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 33445678888777665 2221 122 33477888888888999988877532 2 234566788899
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887765 566899999999999999999988877542 455666666778887777777777666
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
|- ++....++...|+.++..+++.+..
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 52 3445555566677777766655543
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=4.1 Score=42.08 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++..++...+ . +++.......++.+|..|..++..+++.+..+.-.++.
T Consensus 711 l~~~~~q~~d---~---E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v 759 (933)
T KOG2114|consen 711 LMLYFQQISD---P---ETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIV 759 (933)
T ss_pred HHHHHHHhhC---h---HHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHH
Confidence 3444555555 3 33333334445556667777777777777544444433
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.33 E-value=0.033 Score=34.39 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
++..+...|...|+ .++|.+.++.+.+..|+++.++..|+
T Consensus 3 ~~~~la~~~~~~G~---~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQ---PDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45566677777777 77777777777777777776666554
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=3.8 Score=41.37 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=66.1
Q ss_pred CCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC----cchHHHHHHHHhccCCchHHHH
Q 046312 75 SKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT----EFTYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~ 150 (514)
-|.+++|.+++-.+. .+|. .|....+.|++-...++++. -|-..| ...|+.+...++....++.|.+
T Consensus 747 ~g~feeaek~yld~d-rrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDAD-RRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccc-hhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999888 6664 24445556666666555532 111111 1246666666666666666666
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYF 218 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (514)
.+..-.. ....+.++.+..++++-+.+.+.+++ +....-.+...+...|.-++|.+.|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 6643221 12245555555555555555554433 2223333444444444444444433
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=1.8 Score=38.96 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRA---LLSASSIHDAKY 416 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 416 (514)
.....|++..|...|+..... .+-+...--.++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~-- 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA-- 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc--
Confidence 455678888888888888764 233355666788888999999999999999873322222222 2223333333
Q ss_pred cchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 417 QDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..+..... .-...+|++...-..++..|...|+.++|.+.+=.+..++.
T Consensus 219 -~~~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 219 -TPEIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -CCCHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22233333 33345788888888999999999999999888777765543
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.25 E-value=0.033 Score=39.62 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLEL----EPRG---SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+++.+...|...|+ +++|...++++.++ +++. ..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGR---YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555 55555555555433 1111 33567888899999999999998887643
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.25 E-value=1.1 Score=34.92 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (514)
.....+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 4445566777778888877888777653 3566677777778888888888888888777765 54
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.15 Score=45.01 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---Cch
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQN 438 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~ 438 (514)
.|+.-+. +.+.|++.+|...|.... ..||..-| |..++...|+ ++.|...+..+.+-.|+. ++.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~---y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGD---YEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhccc---chHHHHHHHHHHHhCCCCCCChHH
Confidence 3444433 335566666666665542 22333333 6666667777 666666666666655443 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+..|+.+..+.|+.++|..+|+++..+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777777654
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.22 E-value=1.9 Score=37.97 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=101.1
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CC-Cc---ccHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCCcch
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DS-VP---IPWNNLIRGYAWSDRPREAVWVFIDMKRR-GIKPTEFT 131 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~-~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~ 131 (514)
|-...|+.-+.-+- .|++++|.+.|+.+.. .| ++ .+--.++-++-+.+++++|+..+++..+. +-.||. .
T Consensus 33 p~~~LY~~g~~~L~---~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 33 PASELYNEGLTELQ---KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 55567777776654 8999999999988863 12 22 22334566777889999999988887664 223333 4
Q ss_pred HHHHHHHHhcc-------CCchHHHHHHH---HHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhh--HH
Q 046312 132 YPFVLKACAEI-------SGLNEGMQVQA---NVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVS--WN 199 (514)
Q Consensus 132 ~~~ll~~~~~~-------g~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 199 (514)
|..-|.+++.. +|...+.+.+. ++++. -||.. -...|..-...+ .|... =-
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~--~d~LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKL--NDALAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHH--HHHHHHHHH
Confidence 55555555432 23333333333 33332 22211 001111111110 01111 12
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDE---TTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
.+.+-|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456788999999999999999887 22222 34555667777788888777765555443
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.12 E-value=3.9 Score=40.65 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCc-----chHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchH
Q 046312 98 NNLIRGYAWSDRPREAVWVFIDMKRRG-IKPTE-----FTYPFVLKACAE----ISGLNEGMQVQANVTKSGLDSDVYTN 167 (514)
Q Consensus 98 ~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 167 (514)
..++....=.|+-+.+++.+.+..+.+ +.-.. ..|+.++..++. ..+.+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444555566666666665544321 11100 122222222222 23455566666666554 3444444
Q ss_pred HHH-HHHHHcCCCHHHHHHHhhccCCC-------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 168 NNL-VRFYGSCRRKRDACKVFDDMCER-------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 168 ~~l-i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
... .+.+...|++++|.+.|++.... ....+--+.-++.-..+|++|.+.|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 322 23445556666666666654221 11223333334555566666666666666543 3334444433333
Q ss_pred H-hccCCh
Q 046312 240 C-TELGNL 246 (514)
Q Consensus 240 ~-~~~g~~ 246 (514)
| ...|+.
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 3 234444
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.11 E-value=3.9 Score=40.56 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=38.5
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh-ccCCchHHHHHHHHHHHh-CCC-CCcchHHHHHHHHHcCCCHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA-EISGLNEGMQVQANVTKS-GLD-SDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~~~~~ 181 (514)
.+.|..+.+.++|++-.+. ++.+...|......+. ..|+.+.....|+.+... |.. .....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 3445555555555555442 3333334433333222 234444444555444432 111 12334444444444455555
Q ss_pred HHHHHhhccCC
Q 046312 182 DACKVFDDMCE 192 (514)
Q Consensus 182 ~A~~~~~~~~~ 192 (514)
....+++++.+
T Consensus 169 ~v~~iyeRile 179 (577)
T KOG1258|consen 169 RVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.08 E-value=2.2 Score=37.60 Aligned_cols=71 Identities=14% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046312 205 CVENLWLGEAVGYFVKMKDLG--FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMY 275 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 275 (514)
-.+.|++++|.+.|+.+.... -+-...+...++.++-+.++++.|....++..+........-|-..|.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 345667777777777666542 12223445555556666677777776666666654333333333333333
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.06 E-value=0.68 Score=36.87 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 377 LARAGHLKEAYTFIMNMP----FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
..+.|++++|.+.|+.+. ..| ....--.|+.++.+.++ ++.|...++.++++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~---y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD---YEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCC
Confidence 445667777777666664 111 23444456666777777 77777777777777766654
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.04 E-value=1.6 Score=43.27 Aligned_cols=159 Identities=15% Similarity=0.051 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSS-ISPNY-----VTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRI 368 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 368 (514)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555667777777766655432 22211 123333333332 45667788888888765 56665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-
Q 046312 369 HYHTM-ADILARAGHLKEAYTFIMNMP------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV- 440 (514)
Q Consensus 369 ~~~~l-i~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~- 440 (514)
.|... .+.+...|++++|.+.|++.. .+-....+.-+...+....+ +++|.+.+..+.+.+.-....|.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~---w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD---WEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch---HHHHHHHHHHHHhccccHHHHHHH
Confidence 55433 345566788888888888653 11123445555666777777 88888888777776544333444
Q ss_pred HHHHHHHhcCCH-------HHHHHHHHHHH
Q 046312 441 IVANKYAEVGMW-------EKVSNVRRFMK 463 (514)
Q Consensus 441 ~l~~~~~~~g~~-------~~A~~~~~~m~ 463 (514)
..+-++...|+. ++|.+++++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 455555677777 77777777765
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=0.29 Score=43.35 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSIS--PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 375 (514)
|+.-+.. .+.|++..|..-|...++.... -....+-.|..++...|+++.|..+|..+.+.++-.|. +..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444433 3455577777777776664211 11233455666677777777777777776665444444 355556666
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 046312 376 ILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~ 394 (514)
...+.|+.++|..+|+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 6666777777777766664
No 247
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.96 E-value=3.6 Score=39.36 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHcccCCC--CCc---------------ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC----CCCcchH
Q 046312 74 SSKNLTYARSILCNYVND--SVP---------------IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI----KPTEFTY 132 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~--~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~ 132 (514)
+.+.++.|...|..-.++ .+. .-=+..+..+...|++.++..++++|...=. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888887776543210 100 1123456677888999998888888765433 3677777
Q ss_pred HHHHHHHh
Q 046312 133 PFVLKACA 140 (514)
Q Consensus 133 ~~ll~~~~ 140 (514)
+.++-.++
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 77544443
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=94.71 E-value=0.72 Score=44.31 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHH
Q 046312 311 YAEEALELFSNMKN-SSISPN-YVTFLGVLCACNHA---------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILA 378 (514)
Q Consensus 311 ~~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 378 (514)
..+.|+.+|.+... +.+.|+ ...|..+..++... .+..+|.++-+...+. .| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 34667778888773 234555 44566555544332 2334555555555542 33 3444555555556
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCHHH
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV--IVANKYAEVGMWEK 454 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~ 454 (514)
-.|+.+.|..+|++.. ..|| ..+|......+...|+ .++|.+.++++.+++|....+-. ..++.|+..+ .++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhh
Confidence 6677888888888876 5565 3444444455666777 88888888888888876543322 3334566554 455
Q ss_pred HHHHH
Q 046312 455 VSNVR 459 (514)
Q Consensus 455 A~~~~ 459 (514)
|++++
T Consensus 426 ~~~~~ 430 (458)
T PRK11906 426 NIKLY 430 (458)
T ss_pred hHHHH
Confidence 55554
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.43 Score=42.27 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=74.8
Q ss_pred HHHHHhcC--cCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046312 285 RLLFSRME--EINVWTWSAMILGLAQH-----GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG------------ 345 (514)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 345 (514)
+..|..+. +.|-.+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 46777888877777543 566767777888999999999999999998776542
Q ss_pred ----cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 346 ----MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 346 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
+-+-+..++++|.. +|+.||..+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 33457789999988 5999999999999999988765
No 250
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.54 E-value=2.7 Score=35.98 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=102.2
Q ss_pred hcCCHHHHHHHHHhcC--cCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 277 KCGAVGCARLLFSRME--EIN-VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
..|-++-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3444444444444433 233 4678888888888899999999998888754222222223222 23345888888776
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFI-MNMPFQPNPIVLRALLSASS-IHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~a~~~~~~~~~~ 431 (514)
+...-+.-.-.|=...|..++. +.-++.+|..-+ ++.. ..|..-|...+-.+. ..-. .+.+++.+..-
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS------~e~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS------EETLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc------HHHHHHHHHhh
Confidence 6665543223333334433332 233556665443 4443 344455544443332 2222 23333444333
Q ss_pred CCCC-------CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 432 EPRG-------SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 432 ~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..++ ..+|.-|+.-|...|..++|..+|+-....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3232 34688999999999999999999998876554
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.43 E-value=0.48 Score=45.43 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMR----IHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+...++.+..+|...|++++|...|++..+. .|+. ..|..+..+|...|+.++|++.++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777888888888888888888887753 6663 347778888888888888888888875
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.68 Score=43.36 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCc------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE------------------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
+.|.+.|++..|..-|++... .-..+++.+..++.+.+++.+|++.-.+.++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 456666666666666655331 223567778888888888888888888888764 5566666
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcCCHH-HHHHHHHhC
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY-HTMADILARAGHLK-EAYTFIMNM 393 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~-~A~~~~~~~ 393 (514)
-.-..+|...|+++.|+..|+++.+. .|+.... +.|+.+-.+..... ...++|..|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888999999988888853 6654433 34444333333333 335566666
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=2.3 Score=34.23 Aligned_cols=42 Identities=24% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555555442 344455555555544
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.29 E-value=0.54 Score=36.40 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhc
Q 046312 376 ILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE-PRG---SQNLVIVANKYAEV 449 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~ 449 (514)
+++..|+.+.|++.|.+.. .+-....||.-..++...|+ .++|..-++++.++. +.. ..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~---~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD---DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC---hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4556677777777776654 33355667777777777777 666666666666654 221 12455566667777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 046312 450 GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (514)
|+.+.|..-|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777776666554
No 255
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.28 E-value=1.5 Score=36.19 Aligned_cols=136 Identities=16% Similarity=0.081 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC
Q 046312 114 VWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER 193 (514)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 193 (514)
+++++.+.+.|++|+...|..+++.+.+.|++....+ ++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 4555566677888888888888999888888665444 445665566544443332222 2233333333333332
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2335667777888888888888887765322 1122244566666666665555555555443
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.23 E-value=2.4 Score=34.10 Aligned_cols=86 Identities=7% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
-..++..+...+.+.....+++.+...+ ..+...++.++..+++.+ .+.....+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4455555555566666666666665554 244445556666655442 2222222221 1122333344555555
Q ss_pred CCCHHHHHHHhhcc
Q 046312 177 CRRKRDACKVFDDM 190 (514)
Q Consensus 177 ~~~~~~A~~~~~~~ 190 (514)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555554444443
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.02 E-value=5.1 Score=37.16 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhH
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPD---ETTMLVVLSACTELGNLSLGKWVHLQLIERG-----TVLNCQL 267 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 267 (514)
.|-.+.+++-+.-++.+++.+-+.-... |..|. -....++-.++...+.++++.+.|+...+-- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555554443322 22221 1223345556666677777777777665431 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc-------CCHH-HH-----HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE-------INVW-TW-----SAMILGLAQHGYAEEALELFSNMKN----SSISPN 330 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~ 330 (514)
+-.|...|.+..++++|.-+..+..+ .|.. .| ..|.-++...|+...|.+.-++..+ .|-++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888888888888877655544332 2221 12 2234456677777777777766543 342222
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 331 -YVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 331 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
......+...|-..|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334555667777888888877777654
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=93.98 E-value=0.24 Score=40.36 Aligned_cols=91 Identities=9% Similarity=-0.184 Sum_probs=74.5
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEE
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHR 484 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
....+...|+ +++|+.++..+.-.+|-++..+..|+.++-..|++++|...|...-..+.. +|... ..
T Consensus 43 ~Ay~~y~~Gk---~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~--------f~ 110 (165)
T PRK15331 43 HAYEFYNQGR---LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPV--------FF 110 (165)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCcc--------ch
Confidence 3445677899 999999999999999999999999999999999999999999988766542 22222 24
Q ss_pred EEecccCCcChHHHHHHHHHHHH
Q 046312 485 FYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 485 ~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
....+...|+.+.|..-|+..+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 56678889999999998887766
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.85 E-value=1.6 Score=34.84 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=29.2
Q ss_pred HHhcCCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 275 YAKCGAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
..+.|++++|.+.|+.+.. | .......++.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666655553 1 2234445566666666666666666666664
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=19 Score=42.18 Aligned_cols=315 Identities=10% Similarity=0.000 Sum_probs=169.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC--CCCcchHHHHHHHHHcCCCHHHHHHHhhc-cCCCChhhHHHHHHHHHhCCCh
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGL--DSDVYTNNNLVRFYGSCRRKRDACKVFDD-MCERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 211 (514)
+..+--+.+.+.+|...++.-..... .-....|..+...|+.-+++|...-+... ...++ .++ -|......|+|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhccH
Confidence 33444566777888877776311100 11223345555588888888887776653 32222 222 33345667999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
..|..-|+.+.+.+ ++...+++-++......|.++.+.-..+......-+-....++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 99999999998764 333667887787777778777776655544433222122233333455567778877777666
Q ss_pred CcCCHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 292 EEINVWTWSAM--ILGLAQHG--YAEEALELFSNMKNSSISP--------N-YVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 292 ~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
+.+..+|... .....+.. +.-.-.+..+.+++.-+.| + ...|..++....- .++-....
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSIE 1614 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3444445443 22222222 2111122333333211111 0 1122222221111 11111111
Q ss_pred HhhCCCCchH------HHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCCCcchHHHH
Q 046312 359 HVHGIKPMRI------HYHTMADILARAGHLKEAYTFIMNM----PFQP-----NPIVLRALLSASSIHDAKYQDGVGNE 423 (514)
Q Consensus 359 ~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~~~~a~~ 423 (514)
...+..++.. .|..-+..-....+..+-.--+++. ...| -..+|-...+.+...|. ++.|..
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~---~q~A~n 1691 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH---LQRAQN 1691 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc---HHHHHH
Confidence 1123333322 2222222111111112211111111 1122 24678888888888999 999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 424 VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
++-.+.+..+ +.++.-.+......|+...|+.++++..+.+.+
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9988888774 457899999999999999999999999876653
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2.4 Score=38.71 Aligned_cols=155 Identities=11% Similarity=-0.016 Sum_probs=106.9
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY----VTFLGVLCACNHAGMV 347 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~ 347 (514)
....|+..+|-..++++.+ .|...+...=.+|...|+.+.-...++++.-. ..||. ..-..+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456888888888888876 46778888888999999999999999988764 23443 2233444566788999
Q ss_pred HHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---C---HHHHHHHHHHHHhcCCCCcchH
Q 046312 348 EDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMPFQP---N---PIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~---~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
++|++.-++..+ +.+ |.-.-.++...+...|++.++.+++.+-...- + ...|-...-.+...+. ++.
T Consensus 192 ~dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~ 265 (491)
T KOG2610|consen 192 DDAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEK 265 (491)
T ss_pred hhHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhH
Confidence 999988877764 333 34455667777788999999999998876111 1 1223233334455567 899
Q ss_pred HHHHHHHH--HhcCCCCC
Q 046312 421 GNEVRRRL--LELEPRGS 436 (514)
Q Consensus 421 a~~~~~~~--~~~~p~~~ 436 (514)
|.++++.- .+++.++.
T Consensus 266 aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 266 ALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHhhccch
Confidence 99988753 44556555
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.44 E-value=2.5 Score=38.96 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 313 EEALELFSNMKNSSISPNYV--TFLGVLCACNHAGM--VEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+. |+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 55677777777777665432 23333332222222 34677788888875 88887777765543
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=8.3 Score=37.61 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=75.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
+|.-..+..+.+.-++.-++..+. .||..+.-.++ +--...-+.++++++++..+.|-. . +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhh
Confidence 344444556666666666665553 45543322222 222344577888888887766511 0 000000
Q ss_pred HHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 281 VGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-PNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 281 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
.+..-..++.... +-..+-..+..+.-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0000011111111 22233344566666778888888888888754211 123456667778888888888887777
Q ss_pred HHHH
Q 046312 356 EMEH 359 (514)
Q Consensus 356 ~~~~ 359 (514)
+..+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7643
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.41 E-value=14 Score=40.12 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 276 AKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
-+.|.+.+|..++.--.+.-...|.+....+.....+++|.-.|+..-+ ....+.+|...|+|.+|..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3344444444443322222223333334444445555555555543321 1223455556666666666555
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 356 EMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 356 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
++.. +-.--..+-..|+..+...++.-+|-+++.+..
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4432 111111122345555555666666655555543
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.36 E-value=3.4 Score=33.71 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMR---IHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~ 415 (514)
.-...++.+.+..+++.+.. +.|.. .++.. ..+.+.|+|.+|..+|+++. ..|....-..|+..|....+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~- 92 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG- 92 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC-
Confidence 33456788888888888764 35553 33333 33667888888888888886 44444445556655555555
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
-.......+.+.+.+++ +. -..|+..+........|..
T Consensus 93 --D~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 --DPSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred --ChHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 45555555556665554 22 2345555554444444444
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.19 E-value=5.3 Score=34.72 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCH-HHHHHHHH-H
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIER-GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INV-WTWSAMIL-G 305 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 305 (514)
..+......+...+++..+...+...... ........+......+...+.+..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 2223344444555555555566666666665553 111 22222222 5
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC
Q 046312 306 LAQHGYAEEALELFSNMKNSSI--SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH 382 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 382 (514)
+...|+++.|...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 6777777888777777754211 012233333334455667777887777777753 222 35566667777777777
Q ss_pred HHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 383 LKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 383 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
++.|...+.... ..|+ ...+..+...+...+. .+.+...+....+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Confidence 777777777765 3343 3344444444445555 67777777777777665
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.19 E-value=8 Score=36.79 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP---NYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
....+|..+...+.+.|+++.|...+..+...+... .......-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677778888888888888888888877643111 222333334445566777888887777776
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=7.4 Score=35.68 Aligned_cols=159 Identities=10% Similarity=-0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCChHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-C--CHHHHHHHHHH
Q 046312 232 TMLVVLSACTELGNLSL---GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-I--NVWTWSAMILG 305 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 305 (514)
++..++.++...+..+. |..+++.+..... -.+.++..-++.+.+.++.+.+.+.+.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444555555444332 3334444433221 1233444445555555666666666666553 1 22333333333
Q ss_pred H---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH----HHHHhcc------CcHHHHHHHHHHHHHhhCCCCchHHHH
Q 046312 306 L---AQHGYAEEALELFSNMKNSSISPNYV-TFLGV----LCACNHA------GMVEDGYRYFHEMEHVHGIKPMRIHYH 371 (514)
Q Consensus 306 ~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l----l~~~~~~------~~~~~a~~~~~~~~~~~~~~p~~~~~~ 371 (514)
+ ... ....|...+..+....+.|... ....+ +...... ...+....+++.+.+..+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 222 2345555555555544444442 11111 1111121 124445555554444333333333322
Q ss_pred HH-------HHHHHhcCCHHHHHHHHHh
Q 046312 372 TM-------ADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 372 ~l-------i~~~~~~g~~~~A~~~~~~ 392 (514)
++ +....+.+++++|.++|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 2234567888888888763
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.85 E-value=5.9 Score=34.39 Aligned_cols=216 Identities=19% Similarity=0.126 Sum_probs=156.6
Q ss_pred CChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 244 GNLSLGKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 244 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
+....+...+......... .....+......+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444455554444322 1356777788888899999999888887642 445667777778888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 318 LFSNMKNSSISPNYVTFLGVLC-ACNHAGMVEDGYRYFHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
.+.........+. ........ ++...|+++.+...+.+... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999887543332 22222223 68899999999999999854 233 334444555557788999999999988
Q ss_pred CC-CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 393 MP-FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 393 ~~-~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.. ..++ ...+..+...+...++ .+.+...+.......|.....+..+...+...|..+++...+++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGK---YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHccc---HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86 3333 6778888888888888 8999999999999988755566777777777788999999998887644
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=92.84 E-value=7.1 Score=37.82 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=91.5
Q ss_pred CHHHHHHHHHhcC---cCC---HHHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 280 AVGCARLLFSRME---EIN---VWTWSAMILGLAQH---------GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 280 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
..+.|..+|.+.. +.| ...|..+..++... ....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888999887 433 44555554443321 23456777777777754 45677777777777888
Q ss_pred CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCCCcch
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNM-PFQPNP---IVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~~~ 419 (514)
++++.|...|++... +.|| ...|........-.|+.++|.+.+++. ...|.. ......+..|+.++ ++
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LK 424 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hh
Confidence 889999999999974 4776 444555555566789999999999994 466643 33444444566554 34
Q ss_pred HHHHHHH
Q 046312 420 VGNEVRR 426 (514)
Q Consensus 420 ~a~~~~~ 426 (514)
.+.+.+-
T Consensus 425 ~~~~~~~ 431 (458)
T PRK11906 425 NNIKLYY 431 (458)
T ss_pred hhHHHHh
Confidence 4554443
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.80 E-value=3.6 Score=34.65 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH------H
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI------H 369 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~ 369 (514)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+|+.....+++..+...+.++........|.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556667777777777777777777765444442 3355666677777777777777766655311111111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 345788999988887775
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.67 E-value=0.21 Score=29.11 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=6.5 Score=34.41 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC--HHHHHHHHHHHHHcC
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN--VWTWSAMILGLAQHG 310 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 310 (514)
|.....+|...+++++|...+....+. .+.|...| -....++.|.-+.+++.+-+ +..|+.-...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445566666666666655544321 11111111 11122344444444444322 234445555666666
Q ss_pred ChHHHHHHHHHH
Q 046312 311 YAEEALELFSNM 322 (514)
Q Consensus 311 ~~~~a~~~~~~m 322 (514)
..+.|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 666555555443
No 274
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.62 E-value=14 Score=38.22 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhC
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWS 107 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 107 (514)
..+| .+|-.|. |+|++++|.++..+... ......+-..+..+...
T Consensus 112 ~p~W-a~Iyy~L--R~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCL--RCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHH--TTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHH--hcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3455 3555666 89999999999933221 23335566667776654
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.59 E-value=3.7 Score=37.82 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHHhc--c----CCchHHHHHHHHHHHhCC---CCCcchHHHHHH
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKACAE--I----SGLNEGMQVQANVTKSGL---DSDVYTNNNLVR 172 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~ 172 (514)
++.+++++.|++.|++-+..+|.+..-.... . -...+|..+++.|.+... .++...+..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 4567788899999998888777664433333 1 234668888888887753 234455555543
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.72 Score=41.56 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=79.1
Q ss_pred HhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc-----ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 53 VSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP-----IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 53 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
..|...+..+-..++..-. ....++++...+-++.+.++. .+-..+++.+.+ -++++++.++..=.+.|+-|
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~--~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVIS--SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhhhccc--cccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhcccc
Confidence 4566667777777777777 788899999888887643332 222344555544 36789999988888899999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 159 (514)
|..+++.+|+.+.+.++...|.++.-.|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877654
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.02 E-value=2.7 Score=34.57 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhcCcCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHhccCcHHH
Q 046312 278 CGAVGCARLLFSRMEEINVWTWSAM-----ILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGV--LCACNHAGMVED 349 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~~~~ 349 (514)
.+..++|+.-|..+.+.+.-.|-.| .......|+...|...|.++-.....|-.. -...| ...+...|.++.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 3444445555544444332222222 223445566666666666655432222211 11111 112344555555
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
....++.+... +-+.....-..|.-+-.+.|++..|..+|..+.
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 55555444432 222223333445444556666666666666553
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.97 E-value=9.8 Score=34.87 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=29.3
Q ss_pred hHHHHHHHHHcCCCHHH---HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 166 TNNNLVRFYGSCRRKRD---ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~---A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
+...++.+|...+..+. |.++++.+ .......+-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44555556655555432 33333333 1112334444445555566666666666666654
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.90 E-value=0.34 Score=29.75 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.++..++.+|.+.|++++|.+++++..+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999987653
No 280
>PRK09687 putative lyase; Provisional
Probab=91.90 E-value=10 Score=34.81 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG-YAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+..+-...+.++.+.|+.+....+..-+.+++...-...+.++.+.+ +...+...+..+.. .++..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444444445555444332222223333344433333333433332 12334444444442 234444444555555
Q ss_pred ccCc
Q 046312 343 HAGM 346 (514)
Q Consensus 343 ~~~~ 346 (514)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5554
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=8.3 Score=33.81 Aligned_cols=57 Identities=5% Similarity=0.119 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGI--KPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
|...|-.+....++..|...++.-.+..++ .-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556666666666653322111 12344555666655 3566666665553
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.73 E-value=15 Score=36.60 Aligned_cols=366 Identities=11% Similarity=0.030 Sum_probs=200.2
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHH-hCCCchHHHHHHHHHHHc-CCCC-CcchHHHHHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYA-WSDRPREAVWVFIDMKRR-GIKP-TEFTYPFVLK 137 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~ 137 (514)
|......=. +.|..+.+.++|++-.. +..+..|.....-+. ..|+++...+.|+..+.. |..- +...|...|.
T Consensus 82 W~kfA~~E~--klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEY--KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 344444444 78899999999998652 233445665554443 457888888888888763 3222 2235777777
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH---HcC------CCHHHHHHHhhccCCCChhhHHHHHHHHHhC
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY---GSC------RRKRDACKVFDDMCERSVVSWNVIITVCVEN 208 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~------~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (514)
.-...+++.....+++.+.+.- ...++....-| ... ...+++.++-...... ..-...
T Consensus 160 ~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~ 226 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER---------SKITHS 226 (577)
T ss_pred HHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh---------hhcccc
Confidence 7778888999999998887642 22233222222 111 1122222221111100 000001
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHh-------ccCChHHHHHHHHHHHHhC---C----CCchhHHHHHH
Q 046312 209 LWLGEAVGYFVKMKDLGFEPDETT--MLVVLSACT-------ELGNLSLGKWVHLQLIERG---T----VLNCQLGTALI 272 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~-------~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~li 272 (514)
+...+ .+=..+...+.+.+..+ .+.+-..+. ..-........++.-++.- + .++..+|...+
T Consensus 227 ~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 227 QEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred cChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 11111 11111112111111111 111111111 1111122222233322221 1 23456788888
Q ss_pred HHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..-...|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-...+...|+++.
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 88889999999999999887542 345555555555568888888888777664333333322222223455789999
Q ss_pred HHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHH---HHHHhCC-CCCCHHHHHHHH----H-HHHhcCCCCcch
Q 046312 350 GYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAY---TFIMNMP-FQPNPIVLRALL----S-ASSIHDAKYQDG 419 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l~----~-~~~~~~~~~~~~ 419 (514)
|..+++.+... . |+.. .-..-+....+.|..+.+. +++.... ..-+..+...+. . .+...++ .+
T Consensus 385 A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d---~~ 458 (577)
T KOG1258|consen 385 AKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED---AD 458 (577)
T ss_pred HHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC---HH
Confidence 99999999985 3 6633 2223345566788888887 5554443 112222222221 1 2344566 88
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 420 VGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
.|..++..+.+..|++...|..+++.....+.
T Consensus 459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 459 LARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 89999999999999988888888888876664
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.61 E-value=0.98 Score=40.73 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
++..++..+...|+.+.+.+.+++.. .+-+...|..++.+|...|+ ...|..+++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Confidence 34445555555555555555555543 22244555555555555555 5555555555444
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.21 E-value=15 Score=35.95 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=73.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
+|.-..+..+++.-++.-.+..+ +.||-.+.-.++ +--....+.++++++++..+.|- ..+..- ......|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc
Confidence 34444445566666666555555 345544322222 22234567888888888776651 000000 00001111
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE-PDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
.-+. +..+-.++-..+-..+..++.+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++...-+
T Consensus 246 ~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 FWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111 111111111223334556666778888888888877654211 1223445667777777777777777666543
No 285
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.16 E-value=4.6 Score=29.74 Aligned_cols=88 Identities=9% Similarity=0.059 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 144 GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
.-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.++-||...|-+|.. .+.|..++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554311 22222233456788999999999999999999999988865 477888888888888887
Q ss_pred CCCCCCHHHHHH
Q 046312 224 LGFEPDETTMLV 235 (514)
Q Consensus 224 ~~~~p~~~t~~~ 235 (514)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566555543
No 286
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.11 E-value=2 Score=33.43 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=46.1
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPN----PIVLRALLSASSIHDA 414 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~ 414 (514)
.+..|+.+.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++.. ..|. ...|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666553 223345556666666666666666666555543 1111 1222222233556666
Q ss_pred CCcchHHHHHHHHHHhcC
Q 046312 415 KYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~ 432 (514)
.+.|+.-++.+.+++
T Consensus 131 ---dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 ---DDAARADFEAAAQLG 145 (175)
T ss_pred ---hHHHHHhHHHHHHhC
Confidence 666666666666655
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.88 E-value=15 Score=34.91 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP----RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
....+|..+...+.+.|. ++.|..++..+...++ ..+.....-+......|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~---~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGN---FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888888999999 9999999888887652 13556777889999999999999999888773
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.87 E-value=0.37 Score=38.99 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|..+.+.+.+.....+++.+...+..-+....+.++..|++.++.+...++++ ..+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 3455555666666666666666655444445556666666666666666666554 111122234455555555
Q ss_pred CHHHHHHHhhcc
Q 046312 179 RKRDACKVFDDM 190 (514)
Q Consensus 179 ~~~~A~~~~~~~ 190 (514)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555554444
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=11 Score=32.84 Aligned_cols=37 Identities=3% Similarity=-0.003 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
+.+|..+++.+....-+++-.-.++-..+.+.|...-
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 7778888888777665554333344444445554433
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.51 E-value=3.9 Score=34.47 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEEI------NVWTWSAMILGLAQHGYAEEALELFSNMKNS---SISPNYVTFLG 336 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ 336 (514)
..+..+.+.|++.|+.+.|.+.|.++.+. -...+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556677777777777777777776652 2345666777777788888887777776542 21222211111
Q ss_pred HHH--HHhccCcHHHHHHHHHHHHH
Q 046312 337 VLC--ACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 337 ll~--~~~~~~~~~~a~~~~~~~~~ 359 (514)
... ++...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23446788887777766654
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=14 Score=33.59 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-CHHHH---HHHHHHHHHcCChHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-NVWTW---SAMILGLAQHGYAEE 314 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~li~~~~~~~~~~~ 314 (514)
.....|++.+|..+++........ +...-..+..+|...|+.+.|..++..+... ....+ ..-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777766533 3455566777888888888888888777631 11111 112233333333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 315 ALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 315 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333322 33 3444445555666667777766655555543
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.37 E-value=3.7 Score=37.12 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCchHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH----VHGIKPMRIHYHTMA 374 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~li 374 (514)
+..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444455555555555544432 23344445555555555555555544444433 124555544444333
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.93 E-value=0.86 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566666666666666553
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.64 E-value=3.9 Score=30.28 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
+..+-+..+....+.|++....+.+.+|-+.+++..|.++++.++.+.| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4556666677778899999999999999999999999999999998644 333377777653
No 295
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.58 E-value=1.1 Score=37.62 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=51.5
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAK 415 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~ 415 (514)
+...|++++|..-|......+.-.+. ...|..-..++.+.+.++.|++-..+.. +.|. ......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek- 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK- 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh-
Confidence 45667777777777777653211111 2234444455666677777666655543 3332 1222222234555544
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
++.|.+-++.+.+.+|....+...
T Consensus 184 --~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 184 --YEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred --HHHHHHHHHHHHHhCcchHHHHHH
Confidence 666777777777776664433333
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.54 E-value=3 Score=30.47 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666677777778899999999999999999999999999999886533 34556766654
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.90 E-value=1.3 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..++.+|...|++++|++.+++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555666666555555543
No 298
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=19 Score=33.05 Aligned_cols=138 Identities=8% Similarity=-0.035 Sum_probs=70.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTAL 271 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (514)
++..+-...+.++.+.++ ..+...+-.+.+ .+|...-...+.++.+.+ +-..+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 344444455555555554 344444444443 233334444444444432 12334444333332 3455566666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 272 IDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+.++.+.|+......+.+.+..++ .....+.++...|.. +|...+..+.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666433333333333333 234566777777774 677777777753 346666666666654
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.81 E-value=0.27 Score=39.84 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=64.2
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhH
Q 046312 134 FVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGE 213 (514)
Q Consensus 134 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 213 (514)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888899999999999999877566788899999999999988999888884432 333556667777777777
Q ss_pred HHHHHHHH
Q 046312 214 AVGYFVKM 221 (514)
Q Consensus 214 a~~~~~~m 221 (514)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766654
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.64 E-value=0.98 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
|..++.+|...|++++|...+++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4445555555555555555555544
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.56 E-value=34 Score=35.67 Aligned_cols=222 Identities=5% Similarity=-0.151 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHH
Q 046312 244 GNLSLGKWVHLQLIERG-TVLN--CQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 244 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
.+.+.|...+....... ..+. ..+...+.......+...++...++.... .+......-+..-.+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553332 2211 11222332222222224455555555432 1333333333344466666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----------CCC--------Cch-H-----HHHHH
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-----------GIK--------PMR-I-----HYHTM 373 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~--------p~~-~-----~~~~l 373 (514)
+..|-... .-...-.-.+.+++...|+.++|..+|+.+.... |.+ |.. . --..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654321 2222333345555555666666666666653210 111 000 0 00112
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcC
Q 046312 374 ADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g 450 (514)
+..+...|...+|...+..+....+......+.......|. .+.+..+.......+ -.-+..|...+..+.+.-
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~---~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQW---WDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---HHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 34456678888888777766533455555666666667777 666665554432211 112334666666666665
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 046312 451 MWEKVSNVRRFMKNVGLKK 469 (514)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~ 469 (514)
..+.+.-.---.++.+..|
T Consensus 491 ~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNP 509 (644)
T ss_pred CCCHHHHHHHHHHhcCCCC
Confidence 6666554333334555543
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.50 E-value=6.9 Score=35.61 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=73.0
Q ss_pred hCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-CC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 046312 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE-RS-----VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDET 231 (514)
Q Consensus 158 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 231 (514)
.|.+....+...++..-....+++.++..+-++.+ ++ ..+-.++++.+.+ -++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 44455566666666666667778888877766622 11 1112233333333 46779999988888999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
+++.+|+.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887765
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.19 E-value=3.7 Score=32.92 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++++.+++.+.-+.|+.+..-..-++.+...|+|++|..+++++.+.+
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5555555555555566555555555555566666666666666555443
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.19 E-value=2.5 Score=34.41 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNPIVLRAL-LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
.+.++.+++..++..+. ..|.......+ ...+...|+ +++|.++++.+.+-.|..+..-..++.++...|
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~---w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD---WDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34556666666666664 44433222211 122455566 666666666665555554433233333333333
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.95 E-value=14 Score=30.57 Aligned_cols=134 Identities=9% Similarity=0.074 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHHH-
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY-TNNNL- 170 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 170 (514)
...|..-+. +++.|+.++|+.-|..+.+.|..--+. ............|+...|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344554444 356778899999999888876432111 11122234567788888888888876553333222 11111
Q ss_pred -HHHHHcCCCHHHHHHHhhccCCC-C---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 171 -VRFYGSCRRKRDACKVFDDMCER-S---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 171 -i~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
.-.+...|.++......+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12356678888777777666221 1 2234456666677888888888888776643333
No 306
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.84 E-value=0.82 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
+...++.++...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56688999999999999998876
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.83 E-value=29 Score=34.09 Aligned_cols=50 Identities=8% Similarity=0.007 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+.+....+..++....|...-...+.-+-.-|....++++|++++..+.
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 45555666666666655555555666666666667777777777777654
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.49 E-value=15 Score=30.42 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHhC
Q 046312 316 LELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG--HLKEAYTFIMNM 393 (514)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 393 (514)
.++++.+.+.+++|+...+..++..+.+.|.+.....++ . +++-+|.......+-.+.... -..-|++++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 445556666778888888888888888888766544443 3 255555444333322222111 123445555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 394 PFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.. .+..++..+...|+ ..++++.+.+....+...-..+.++..+.++...-..+++-..+++.
T Consensus 89 ~~-----~~~~iievLL~~g~------vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQ------VLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hh-----hHHHHHHHHHhCCC------HHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 41 23445566677777 44444444443322222345677777777777777777777766554
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=40 Score=35.30 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDMCERSVVSW----NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
...-++.+.+...++-|..+.+.-. .|.... ....+-+.+.|++++|...|-+-+.. +.|. .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 4455666666667777776665542 222222 22233455667777777666554432 2222 23444455
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 243 LGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 243 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
...+..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55556666666666666654 44445566666666666666665555544
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=39 Score=35.04 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=35.0
Q ss_pred CCCChHHHHHHHcccCC-CC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch
Q 046312 74 SSKNLTYARSILCNYVN-DS---VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN 146 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 146 (514)
+.+.+++|..+.+.... .+ -...+...|..+.-.|++++|-...-.|... +..-|......+...++..
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 55666666666655442 11 1123555666666666666666655555432 3333444444444444443
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.27 E-value=40 Score=35.03 Aligned_cols=61 Identities=18% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc-------hHHHHHHHHHHHh
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL-------NEGMQVQANVTKS 158 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~ 158 (514)
-=.+|-.|.|+|++++|.++..+.... .......+...+..+....+- ++...-+++....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 336678889999999999999666544 556667788888888775332 3444555555444
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=13 Score=37.17 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046312 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2344566666666666666666666655443 33344444455554444333333
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 357 MEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 357 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+. |. -|. -..+|...|+++++.+++.+-.
T Consensus 718 ~~~~-g~-~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AKKQ-GK-NNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHhh-cc-cch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 3332 21 111 1123445566666666665543
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.79 E-value=1.1 Score=25.31 Aligned_cols=27 Identities=15% Similarity=-0.188 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
..+..+...+...|+ +++|.+.++++.
T Consensus 2 ~~~~~lg~~~~~~~~---~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN---YEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 456778889999999 999999998875
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.57 E-value=0.84 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=13.0
Q ss_pred CcchHHHHHHHHHcCCCHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~ 184 (514)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666553
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.24 E-value=1.4 Score=40.24 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=72.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDA 414 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 414 (514)
..-|.++|.+++|+..|..... +.| |.+++..-..+|.+..++..|..-...+. ...-...|..-..+=...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3457788999999999888774 356 78888888888999988887776665554 11112233333333344455
Q ss_pred CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 415 KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
..+|.+-.+.+.++.|++.. |-..|.+.....++.-+.+
T Consensus 181 ---~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 ---NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred ---HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 77788888888888888543 4444444455555444433
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.13 E-value=26 Score=31.79 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHH-cCCCCCcchHHHHHHHHhc-cC-CchHHHHHHHHHHHh-CCCCCcchHHHHHHHHHcCCCHHHHHH
Q 046312 110 PREAVWVFIDMKR-RGIKPTEFTYPFVLKACAE-IS-GLNEGMQVQANVTKS-GLDSDVYTNNNLVRFYGSCRRKRDACK 185 (514)
Q Consensus 110 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~ 185 (514)
..+|+.+|+..-. ..+--|......+++.... .+ ....--++.+-+... |-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1234455555555555444 11 122222233333321 235566666677777777777777777
Q ss_pred Hhhcc-----CCCChhhHHHHHHHHHhCCChhHHHHHH
Q 046312 186 VFDDM-----CERSVVSWNVIITVCVENLWLGEAVGYF 218 (514)
Q Consensus 186 ~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (514)
+++.. +..|...|..+|......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77666 2246677777777777777765544443
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.97 E-value=1 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++..++.+|.+.|++++|.++|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46688999999999999999999987643
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=47 Score=34.53 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=82.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCC---CcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDS---DVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 212 (514)
++.+.+.+.+++|+...+... |..| -.......|+.+.-.|++++|-...-.|...+..-|.-.+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 334455566666665544332 2233 23456667777777777777777777776666666666666666665554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH--------------HHH----HHHHhCCCCchhHHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKW--------------VHL----QLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~--------------~~~----~~~~~~~~~~~~~~~~li~~ 274 (514)
....++ -......+...|..++..+.. .+...-.+ +.+ +..+. .-+...-..|+..
T Consensus 441 ~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~L 514 (846)
T KOG2066|consen 441 DIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHL 514 (846)
T ss_pred hhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHH
Confidence 433221 111111233344444444433 11111111 111 11111 1123344568999
Q ss_pred HHhcCCHHHHHHHHHhcCcCCH
Q 046312 275 YAKCGAVGCARLLFSRMEEINV 296 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~ 296 (514)
|...+++.+|...+-...++++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHccChHHHHHHHHhccChHH
Confidence 9999999999999998887544
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.65 E-value=2.3 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555556666666666655554
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.47 E-value=18 Score=29.20 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADILARAGHLKEAYTFIMNMPFQP-NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 417 (514)
...++.+++..+++.+.- +.|+ ..++...+ +...|+|++|..+|++....+ ....-..|+..|.....
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~--- 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG--- 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC---
Confidence 347888888888888874 3554 44444433 678899999999999987333 32333334333333333
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
- + .|...+......|...++..+.+.+.
T Consensus 93 D-----------------p-~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 D-----------------A-EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred C-----------------h-HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1 1 34444445555555555666666555
No 321
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=84.67 E-value=11 Score=28.18 Aligned_cols=88 Identities=8% Similarity=0.051 Sum_probs=53.9
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 142 ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 142 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888888877652 233333344556788899999855555556788888877754 4778888888888777
Q ss_pred HHCCCCCCHHHH
Q 046312 222 KDLGFEPDETTM 233 (514)
Q Consensus 222 ~~~~~~p~~~t~ 233 (514)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6655 4444444
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.44 E-value=9.8 Score=30.57 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCCCh--HHHHHHHHhcccCCCCChHHHHHHHcccCC--------CCCcccHHHHHHHHHhCCC-chHHHH
Q 046312 47 IHAQIQVSGLQNDA--QILKELVRFCTLSSSKNLTYARSILCNYVN--------DSVPIPWNNLIRGYAWSDR-PREAVW 115 (514)
Q Consensus 47 ~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~-~~~a~~ 115 (514)
....|.+.+..++. ...|.++.... ..+++.-.+.+++.+.. ..+..+|+.++.+..+... --.+..
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~--~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLA--SYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 33445566666665 56678888777 78888888888887642 2344678888888866655 345788
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccC
Q 046312 116 VFIDMKRRGIKPTEFTYPFVLKACAEIS 143 (514)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g 143 (514)
+|+.|++.+.+++..-|..+++++.+..
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 8888888788888888999998876653
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.96 E-value=8.7 Score=28.20 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
++.+-++.+....+.|+.......+++|.+.+++..|.++++.++.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555667777777777777777777777777777766643
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.59 E-value=2.4 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577899999999999999999998864
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.54 E-value=8.1 Score=24.86 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhhcCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 514 (514)
...++-++.+.|++++|.++.+.+.+... ...+|..+-+.+.+.++++++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--------------------------~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEP--------------------------DNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTT--------------------------S-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC--------------------------CcHHHHHHHHHHHHHHhccCC
Confidence 45678888999999999999998876443 345677777777777776653
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.46 E-value=2.8 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578899999999999999999998765
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.90 E-value=49 Score=32.28 Aligned_cols=145 Identities=12% Similarity=-0.013 Sum_probs=93.4
Q ss_pred CCccCCCCCCCCCcccchhhhHHHHHHHhhcChhHH-HHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcc
Q 046312 9 TNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHL-YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCN 87 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~ 87 (514)
+|+-..++++....+......+...-+. .++...+ ++++..+....-.|+....-+.|.. ..|+++.+...+..
T Consensus 274 ~~~~~d~~~q~~~~~~~~~~~si~k~~~-~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~----~lg~ye~~~~~~s~ 348 (831)
T PRK15180 274 TNHHLDEGRQEKQDQIREITLSITKQLA-DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFS----HLGYYEQAYQDISD 348 (831)
T ss_pred cccccccccCcCCcchhHHHHHHHHHhh-ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH----HhhhHHHHHHHhhc
Confidence 4455555554444433333322222222 2566555 6788888776667777666666654 56999999998876
Q ss_pred cCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 046312 88 YVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159 (514)
Q Consensus 88 ~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 159 (514)
... .....+-..+++...+.|+++.|...-+-|....+. +.+.........-..|-++++.-.|+++....
T Consensus 349 ~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 349 VEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 652 334456778888888999999999999888776553 33333333334445677888888888887654
No 328
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.88 E-value=23 Score=33.87 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.9
Q ss_pred CHHHHHHH---HHHHHhcCCCCcchHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 046312 398 NPIVLRAL---LSASSIHDAKYQDGVGNEVRRRLLELEPR-GSQNLVIVANKYA-EVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l---~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 464 (514)
|...|.++ +..+.+.|- +..|.+..+.+..++|. ||-.-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~---~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGC---WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 445667777 99999999999999998 7766667777774 77888888888887665
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.41 E-value=36 Score=36.39 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCh--HHHHHHHHHHHHh
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD---ETTMLVVLSACTELGNL--SLGKWVHLQLIER 259 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~--~~a~~~~~~~~~~ 259 (514)
-|..|+..|...|+.++|+++|.+..+..-.-| ...+-.++..+.+.+.. +.++++-+...+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 588899999999999999999999876320011 11222344444444443 5555555554444
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.38 E-value=2.8 Score=23.62 Aligned_cols=31 Identities=19% Similarity=0.048 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+|..+...+...|+ .+.|.+.++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~---~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGD---YEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 34455556666666 66666666666666653
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.78 E-value=18 Score=28.51 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHhcCCHH---HHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 364 KPMRIHYHTMADILARAGHLK---EAYTFIMNMP--FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.++..+--.+..++.+..+.+ +-+.+|+++. ..|+ .....-|.-++.+.++ ++.+.+.++.+.+.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke---Y~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE---YSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh---HHHHHHHHHHHHhhCCCcH
Confidence 455555555666666655433 4455666553 2232 1222334556777777 7777777777777777754
No 332
>PRK12798 chemotaxis protein; Reviewed
Probab=81.50 E-value=52 Score=31.65 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHhcCc----CCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHH
Q 046312 278 CGAVGCARLLFSRMEE----INVWTWSAMILG-LAQHGYAEEALELFSNMKNSSISPN----YVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~ 348 (514)
.|+..++.+.+..+.. +....|-.|+.+ .....+..+|+.+|+...-. .|. .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4566666666665543 233445555544 33345666777777665542 233 222333344456667777
Q ss_pred HHHHHHHHHHHhhCCCCchHHHH-HHHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 349 DGYRYFHEMEHVHGIKPMRIHYH-TMADILAR---AGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 349 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
++..+-.....+|.-.|-...|. .+...+.+ .-..+....++..|.-.-....|..+...-...|+ .+.+..+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk---~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGK---TELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCc---HHHHHHH
Confidence 76666666655544444433222 22222222 22344455555555422234566666667777777 7777777
Q ss_pred HHHHHhcC
Q 046312 425 RRRLLELE 432 (514)
Q Consensus 425 ~~~~~~~~ 432 (514)
.+++..+.
T Consensus 280 s~~A~~L~ 287 (421)
T PRK12798 280 SERALKLA 287 (421)
T ss_pred HHHHHHhc
Confidence 77776665
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.45 E-value=24 Score=34.26 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHH
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
.|+.-.|-+-+....+.+.-.|+.....+.| +...|+++.+...+.... +.....+..+++......++ .+.|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r---~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR---WREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh---HHHH
Confidence 3555444433333333233344433333322 345566666666665553 33344555556666555565 5555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 422 NEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
....+.+..-+-.++.....-+......|-+|++...|+++...+.+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 55444444333333333333333334456677777777777655443
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.31 E-value=14 Score=31.58 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCChhHH
Q 046312 146 NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM-------CERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+. ...|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443334444444444443 44555555555444 134555666666666666666655
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.23 E-value=92 Score=34.30 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
...|+.++...|..++|.++-+...
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~f~ 1211 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKAFD 1211 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4577888888888888877755443
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.98 E-value=41 Score=30.10 Aligned_cols=49 Identities=4% Similarity=0.032 Sum_probs=24.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCCc---chHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 142 ISGLNEGMQVQANVTKSGLDSDV---YTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 142 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
...+++|+.-|++..+..-.... .+.-.+|..+.+.|++++....+.++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34666677777666654211111 12334455555555555555555544
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.37 E-value=12 Score=27.76 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALI 272 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 272 (514)
+..+-++.+....+.|+.......+.+|.+.+++..|.++++.+..+-- ....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 3444555555566777777777777777777777777777777665532 1222554444
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.20 E-value=5.1 Score=23.69 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455556666666666666666665543
No 339
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=42 Score=29.47 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchH----HHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHH---HHHH-H-HH-h
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRI----HYHTMADILARAGHLKEAYTFIMNMP---FQPNPIVLR---ALLS-A-SS-I 411 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~---~l~~-~-~~-~ 411 (514)
.++++|+..|+...+-+...-... .+.-+...-+..|++.+|.++|++.. ...+..-|. .++. + |. .
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566666666666654332222111 22223333456788999999998874 211211121 1111 1 22 2
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
..+ .-.+..++++..++.|.-.++
T Consensus 208 ~~D---~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KAD---EVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccc---HHHHHHHHHHHHhcCCccccc
Confidence 255 667888999999999875554
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.29 E-value=30 Score=29.58 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHH
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER---GTVLNCQLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 284 (514)
+.|.+.|-++...+.--++.....+...|. ..+.+++..++....+. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444455555544443333333333333332 44455555555444433 1234455555555555555555544
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.24 E-value=23 Score=26.24 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 246 LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34455555544443311 22233333455677888888888888887788888866644 3566667777777777766
Q ss_pred CCCCCHHHHH
Q 046312 326 SISPNYVTFL 335 (514)
Q Consensus 326 g~~p~~~~~~ 335 (514)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 45544443
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.18 E-value=39 Score=28.74 Aligned_cols=89 Identities=9% Similarity=-0.010 Sum_probs=52.9
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH-----HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-----TMADILARAGHLKEAYTFIMNMPFQP-NPIVLRALLSASSIH 412 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 412 (514)
..+...++++.|...++..... +.| ..+. .|.+.....|.+|+|+.+++....+. .......-.+.+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 4566677777777777766532 222 2222 34455667788888888887775111 122233334556777
Q ss_pred CCCCcchHHHHHHHHHHhcCCC
Q 046312 413 DAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
|+ -++|+..++++.+.+++
T Consensus 173 g~---k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GD---KQEARAAYEKALESDAS 191 (207)
T ss_pred Cc---hHHHHHHHHHHHHccCC
Confidence 77 77777777777777643
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.00 E-value=3.9 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 440 VIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999998644
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.76 E-value=27 Score=31.45 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh-
Q 046312 303 ILGLAQHGYAEEALELFSNMKNS--SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR- 379 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 379 (514)
|++++..|+|.+++...-.--+. .++|. ....-|-.|.+.+....+.++-...... .-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 45566666666655544333321 12332 2223333466666666666665555543 222223335555554443
Q ss_pred ----cCCHHHHHHHHH
Q 046312 380 ----AGHLKEAYTFIM 391 (514)
Q Consensus 380 ----~g~~~~A~~~~~ 391 (514)
.|.+++|.++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 466677666663
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.76 E-value=35 Score=29.15 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=60.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHH
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPNY-----VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADIL 377 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 377 (514)
.-+..+|++++|..-|.+.++.- ++.. ..|..-..++.+.+.++.|+.--.+..+ +.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 45788999999999999999852 2222 2233334567778888888776666654 3453 22223334578
Q ss_pred HhcCCHHHHHHHHHhCC-CCC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQP 397 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p 397 (514)
.+...+++|++=++++. ..|
T Consensus 179 ek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCc
Confidence 88889999999888886 444
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.71 E-value=7.2 Score=35.91 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=58.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc--
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA-- 380 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-- 380 (514)
.-|.+.|.+++|+.+|..... +.| |.+++..-..+|.+.+.+..|..-......- -...+.+|.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHH
Confidence 469999999999999998876 456 8889988889999999988777655555431 12345555554
Q ss_pred -----CCHHHHHHHHHhCC-CCCC
Q 046312 381 -----GHLKEAYTFIMNMP-FQPN 398 (514)
Q Consensus 381 -----g~~~~A~~~~~~~~-~~p~ 398 (514)
|+..+|.+-.+... ..|+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcc
Confidence 55555555444443 5666
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.63 E-value=56 Score=29.74 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 402 LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
++.....|..+|. +.+|.++.+++..++|-+...+..|+..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~---~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGK---PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445567899999 9999999999999999999899999999999999888888877764
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.55 E-value=17 Score=36.30 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCCchHHHHHHHHH
Q 046312 132 YPFVLKACAEISGLNEGMQVQANV 155 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~~~~~~~ 155 (514)
|..|.++....|++..|.+.|...
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh
Confidence 445555555555555555544433
No 349
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.21 E-value=48 Score=28.75 Aligned_cols=156 Identities=12% Similarity=0.021 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH--HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA--CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
.+||.+--.+...|+++.|.+.|+...+.+ |. .-|..+-++ +--.|++..|.+-+.+.-+.+ +.|+ |.+ +.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~-LW 172 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRS-LW 172 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHH-HH
Confidence 678888777888888888888888776643 21 123322222 234577777777666665553 2222 111 11
Q ss_pred HHHc--CCCHHHHHH-HhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhc
Q 046312 173 FYGS--CRRKRDACK-VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD-------ETTMLVVLSACTE 242 (514)
Q Consensus 173 ~~~~--~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~t~~~ll~~~~~ 242 (514)
.|.. .-+..+|.. +.++....|..-|...|-.|.- |+..+ ..++++.... -.-+ ..||-.+..-+..
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 2222 223444433 3344444555555444433221 11111 1223333221 1111 1345555555566
Q ss_pred cCChHHHHHHHHHHHHhC
Q 046312 243 LGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 243 ~g~~~~a~~~~~~~~~~~ 260 (514)
.|+.++|..+|+..+..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 666666666666655543
No 350
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.78 E-value=67 Score=31.47 Aligned_cols=114 Identities=8% Similarity=0.017 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHc---CC-CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHH
Q 046312 111 REAVWVFIDMKRR---GI-KPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 111 ~~a~~~~~~m~~~---~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 186 (514)
++...++...... |+ ..+......++..+ .|+...+..+++.+...+...+ . +...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It---~-------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT---L-------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC---H-------------HHHHHH
Confidence 4555555554321 33 34444444444432 5777777777776654311111 1 111122
Q ss_pred hhcc---CCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 187 FDDM---CERSVVSWNVIITVCVE---NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 187 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
+... ...+...+..++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2111 11222334445555554 47888888888999888877765555444444433
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.64 E-value=22 Score=27.60 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+..+-+..+..-.+.|++......+++|-+.+++..|.++|+.++.+ +.+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34455566666678999999999999999999999999999999874 3444445666553
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.37 E-value=19 Score=31.12 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-hCCCCchHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV-HGIKPMRIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~ 376 (514)
+.+..++.+.+.+...+++...++-++.. +.|..+-..+++.+|-.|++++|..-++-...- ....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888888999998888877652 334555667778888899999988776665531 0123345566666654
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.98 E-value=1.3e+02 Score=32.35 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc---chHHHHHHHHhccCCc--hHHHHHHHHHHHhCCCCCcchHHHH
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE---FTYPFVLKACAEISGL--NEGMQVQANVTKSGLDSDVYTNNNL 170 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l 170 (514)
-|..|+..|...|..++|+++|.+.....-.-|. ..+-.++..+...+.. +..+++-++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl-------------- 571 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL-------------- 571 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh--------------
Confidence 4788888899999999999998887653100111 0122222222222222 22222222222
Q ss_pred HHHHHcCCCHHHHHHHhhccCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE--RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
..+.+.+.++|-.-.. .....-. .+-.|+.....+-+..+++.+....-.++..-.+.++..|+
T Consensus 572 ------~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 572 ------NKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ------ccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2333444444433100 0011111 22335566777778888888877655556655566666554
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.82 E-value=93 Score=30.40 Aligned_cols=197 Identities=10% Similarity=0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHhCCCCChHH--HHHHHHhcccCCCCChHHHHHHHcccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHH
Q 046312 46 QIHAQIQVSGLQNDAQI--LKELVRFCTLSSSKNLTYARSILCNYVNDSVP---IPWNNLIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 46 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m 120 (514)
.+...+.+.|..|+... ....+...+ ..|+.+-+..+++.-. .++. ...+ .+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~ga-~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAM--KFRDSEAIKLLMKHGA-IPDVKYPDIES-ELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHhCCC-CccccCCCccc-HHHHHHHCCCHHHHHHHHH--
Confidence 44555666787776532 334445555 6788877776666533 2222 2223 3444456677766555443
Q ss_pred HHcCCCC----CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhccCCC-
Q 046312 121 KRRGIKP----TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDMCER- 193 (514)
Q Consensus 121 ~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~- 193 (514)
.|... +.... +.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-...
T Consensus 90 --~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 90 --LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred --cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 22211 11112 2333444556553 4455556666554322 123445556677777777666654322
Q ss_pred --ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 046312 194 --SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT---MLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264 (514)
Q Consensus 194 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 264 (514)
|..-++.+.. .+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++
T Consensus 163 ~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 163 IEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 2223333333 33445543 3344556666555432 123444344555543 3445555666555
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.22 E-value=13 Score=27.21 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
....++...+.+|++......++..+...|++++|.+.+-.+.+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34556666777888888888888888888888888888888776543
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.08 E-value=8.3 Score=21.23 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=11.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHh
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
..++.+.|++++|...|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33444455555555555555543
No 357
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=12 Score=32.67 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=40.4
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCCCc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLR-ALLSASSIHDAKYQ 417 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~~~~~~~~~~ 417 (514)
|....+++.|..-|.+.. -+.|+.. -|+.=+.++.+..+++.+..--.+.. +.||..--. .+..+......
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~--- 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG--- 93 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc---
Confidence 444455566665554444 3355543 33444555556666665554443332 445443222 23333344444
Q ss_pred chHHHHHHHHHHh
Q 046312 418 DGVGNEVRRRLLE 430 (514)
Q Consensus 418 ~~~a~~~~~~~~~ 430 (514)
++.+...+.++..
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 5666666655543
No 358
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.77 E-value=2.7 Score=38.60 Aligned_cols=89 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 379 RAGHLKEAYTFIMNMP-FQ-PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
..|.+++|++.|.... .. |....|.--.+++.+.+. ...+.+-+..+.+++|+....|-.=..+-.-.|+|.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k---p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK---PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccC---CchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 4677888888887765 33 345556556666777777 888888888888888888777877778888888899998
Q ss_pred HHHHHHHhCCCCCC
Q 046312 457 NVRRFMKNVGLKKM 470 (514)
Q Consensus 457 ~~~~~m~~~~~~~~ 470 (514)
..+......++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 88888888777543
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.24 E-value=2.4 Score=35.18 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCCC--------cchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 395 FQPN-PIVLRALLSASSIHDAKY--------QDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 395 ~~p~-~~~~~~l~~~~~~~~~~~--------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.|+ ..++..+..++..++... .+++|...++++...+|.+. +-+ ...+..++|-++..++.+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-----~Y~--ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-----LYR--KSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-----HHH--HHHHHHHTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-----HHH--HHHHHHHhhHHHHHHHHHH
Confidence 5565 366777777776665421 14555556666666677653 111 2223345666666666665
Q ss_pred CC
Q 046312 466 GL 467 (514)
Q Consensus 466 ~~ 467 (514)
+.
T Consensus 137 ~~ 138 (186)
T PF06552_consen 137 GL 138 (186)
T ss_dssp SS
T ss_pred Hh
Confidence 54
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.18 E-value=1.4e+02 Score=31.82 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=110.5
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcc-------hHHHHHH-HHHcCCCHHHHHHHhhccC--------CCChhhHHHHHH
Q 046312 140 AEISGLNEGMQVQANVTKSGLDSDVY-------TNNNLVR-FYGSCRRKRDACKVFDDMC--------ERSVVSWNVIIT 203 (514)
Q Consensus 140 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~ 203 (514)
....++++|..++.++...-..|+.. .+++|-. .....|++++|.++.+... ...+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888876543233222 2333322 2345678888877766551 134566777777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCChHH--HHHHHHHHHHhC---C---CCchhHHHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVL-----SACTELGNLSL--GKWVHLQLIERG---T---VLNCQLGTA 270 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll-----~~~~~~g~~~~--a~~~~~~~~~~~---~---~~~~~~~~~ 270 (514)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+... ....+....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7888888988888877766543233443333222 23445563222 222233222221 0 112234444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc------CCH--H--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE------INV--W--TWSAMILGLAQHGYAEEALELFSNMKNSSISP----NYVTFLG 336 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~------~~~--~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ 336 (514)
+..++.+ ++.+..-...-.+ +.. . .+..|+..+...|+.++|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333222222111 211 1 22356777888899999888888887643222 2222111
Q ss_pred HH--HHHhccCcHHHHHHHHHH
Q 046312 337 VL--CACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 337 ll--~~~~~~~~~~~a~~~~~~ 356 (514)
.+ ......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223446777776665554
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.91 E-value=9.4 Score=23.43 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHhccCChHHHHHHHHHHH
Q 046312 237 LSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 237 l~~~~~~g~~~~a~~~~~~~~ 257 (514)
..+|...|+.+.|..+++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.63 E-value=76 Score=28.48 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=141.8
Q ss_pred CCCCCcchHHHHHHH-HHcCCCHHHHHHHhhccCC--C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CC-
Q 046312 159 GLDSDVYTNNNLVRF-YGSCRRKRDACKVFDDMCE--R-----SVVSWNVIITVCVENLWLGEAVGYFVKMKDL---GF- 226 (514)
Q Consensus 159 ~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~- 226 (514)
+-.||+..-|..-+. -.+..+.++|..-|+++.+ + .-.+.-.+|....+.+++++.+..|.+|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345666544332221 1344578889998888732 2 2335556788899999999999999988542 12
Q ss_pred -CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCc-------
Q 046312 227 -EPDETTMLVVLSACTELGNLSLGKWVHLQLIER-GTVLNC----QLGTALIDMYAKCGAVGCARLLFSRMEE------- 293 (514)
Q Consensus 227 -~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 293 (514)
.-+..+.+.++..-+...+.+.-..+++.-.+. .-..|. .+-+.|...|...|.+.+...++.++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 234556777887777777777777766654332 001111 2335677778888888888888777652
Q ss_pred -C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHh
Q 046312 294 -I-------NVWTWSAMILGLAQHGYAEEALELFSNMKN-SSISPNYVTFLGVLCA----CNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 294 -~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~ 360 (514)
. -...|..=|+.|....+-.+...+|++.+. ...-|.+.....+-.+ ..+.|++++|..-|-+..+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 124666777888887777777777777654 2334555554443322 23457777765433333321
Q ss_pred h---CCCCchHH--HHHHHHHHHhcCCHHHHHHHHHh--CC---CCCCHHHHHHHHHHHHhc
Q 046312 361 H---GIKPMRIH--YHTMADILARAGHLKEAYTFIMN--MP---FQPNPIVLRALLSASSIH 412 (514)
Q Consensus 361 ~---~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~--~~---~~p~~~~~~~l~~~~~~~ 412 (514)
+ |.+....+ |..|..++.+.| ..=|+. +. ..|.......|+.+|..+
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 2 22222222 333334443332 111211 11 335556777888887654
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.98 E-value=28 Score=30.67 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKAC 139 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (514)
+..+..+++++.+...+++++|...+..-. .. +..-..++.++...|+.+.|+.++..+.- ...+......++..
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L~~ps-~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELLSHPS-LI-PWFPDKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA- 150 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHhCCCC-CC-cccHHHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH----cCCCHHHHHHH
Q 046312 140 AEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG----SCRRKRDACKV 186 (514)
Q Consensus 140 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~A~~~ 186 (514)
...+.+.+|..+-+...+ .-....+..++..+. +.+..++-..+
T Consensus 151 La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.94 E-value=82 Score=28.53 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=81.5
Q ss_pred cCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCChH-HHH
Q 046312 176 SCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY----FVKMKDLGFEPDETTMLVVLSACTELGNLS-LGK 250 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~-~a~ 250 (514)
+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+.+.|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666777666533 23345566665544333 344444566777766666666665443222 233
Q ss_pred HHHHHHHHh---C--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 251 WVHLQLIER---G--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 251 ~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
++.+.++++ + ..-++.....+...|.+.|++.+|+..|-.-.+++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 334444333 2 2235677888889999999999998887766655554443344333333333322
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
+...-..++ -|...++...|...++...+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222233 355567888888877776654
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.08 E-value=16 Score=25.72 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=20.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 046312 308 QHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
..++.++|+..|+...+.-..+. -.++..++.+++..|++.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554322222 1234445555555555554443
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.04 E-value=62 Score=29.28 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=36.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-----
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA----- 276 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 276 (514)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-...--.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455666666666655443333221111222233333344555555555544444333322222233444444332
Q ss_pred hcCCHHHHHHHH
Q 046312 277 KCGAVGCARLLF 288 (514)
Q Consensus 277 ~~g~~~~A~~~~ 288 (514)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 244555554444
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.98 E-value=1.2e+02 Score=30.12 Aligned_cols=168 Identities=8% Similarity=0.075 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM 346 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 346 (514)
-+++..+..+.+++-.+.+..+|.. .+-..|..++++|..+ ..++-..+|+++.+.. -|...+..-+.-+...++
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEkik 146 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHhc
Confidence 3444444444444444444444443 3444555556666555 4455566666665532 233333333323333355
Q ss_pred HHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCCC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM------RIHYHTMADILARAGHLKEAYTFIMNMP----FQPNPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~ 416 (514)
.+.+..+|.++..+ +-|. ...|..|...- ..+.|..+.+..++. ..--...+.-+-.-|....+
T Consensus 147 ~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN-- 220 (711)
T COG1747 147 KSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN-- 220 (711)
T ss_pred hhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC--
Confidence 66666666666543 2221 12333333211 234455555555543 12223444444455666666
Q ss_pred cchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 417 QDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
+.++.+++..+.+.+..+..+...++.-+
T Consensus 221 -~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 -WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred -HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 88888888877777665554444444433
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.97 E-value=1.1e+02 Score=29.79 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=22.2
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWT---WSAMILGLAQHGYAEEALELFSNMKNSSISPN 330 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 330 (514)
.+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..++
T Consensus 175 A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 175 AMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 344555555555554433322111 112333334455543 3344445565554
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.55 E-value=1.4e+02 Score=30.66 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=69.2
Q ss_pred HhCCCchHHHHHHHHHHH-------cCCCCCcchHHHHHHHHhccC-----CchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKR-------RGIKPTEFTYPFVLKACAEIS-----GLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
....+++.|+.+|+.+.+ .| +.....-+..+|.+.. +.+.|..++.+..+.| .|+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345577777777777655 43 2233444455554432 4455777777766666 333332222222
Q ss_pred HHHc-CCCHHHHHHHhhccCCC-ChhhHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 046312 173 FYGS-CRRKRDACKVFDDMCER-SVVSWNVIITVCV----ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNL 246 (514)
Q Consensus 173 ~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 246 (514)
.... ..+...|.++|...... .+.++-.+..+|. ...+...|..++++.-+.| .|...--...+..+.. ++.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 1111 13455666666655322 2222222222221 1234556666666666555 2332222223333333 555
Q ss_pred HHHHHHHHHHHHhC
Q 046312 247 SLGKWVHLQLIERG 260 (514)
Q Consensus 247 ~~a~~~~~~~~~~~ 260 (514)
+.+...+..+.+.|
T Consensus 414 ~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 414 DTALALYLYLAELG 427 (552)
T ss_pred cHHHHHHHHHHHhh
Confidence 55555555544444
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.83 E-value=1.5e+02 Score=30.84 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=32.1
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHH--HHHhcCCHHHHHHHHH
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMAD--ILARAGHLKEAYTFIM 391 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~--~~~~~g~~~~A~~~~~ 391 (514)
+-.+++..|...++.+.....-.|+ ...+..++. .+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3458898999999888864332222 222223333 2345799999999997
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.59 E-value=10 Score=19.94 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+..++.++...|++++|...+++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788888888888888888887754
No 372
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.51 E-value=1.3e+02 Score=29.84 Aligned_cols=274 Identities=10% Similarity=-0.086 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
+.|.+.++-..+. +...+...-....-..+.+...+++++..+. -|+...|+..|..|...-.......+.+.+
T Consensus 268 ~laqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~ 341 (568)
T KOG2396|consen 268 DLAQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTM 341 (568)
T ss_pred HHHHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred ---------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CChHHHHHHHHHHHHh
Q 046312 191 ---------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL--GNLSLGKWVHLQLIER 259 (514)
Q Consensus 191 ---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 259 (514)
.......+......+....-..++...-..+...++.-|...|..-+....+. .---.-...+..+...
T Consensus 342 ~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~ 421 (568)
T KOG2396|consen 342 CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ 421 (568)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q ss_pred CCCCchhHHHHHH-HHHHhcCCHHHHHHHHHhcCcCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 260 GTVLNCQLGTALI-DMYAKCGAVGCARLLFSRMEEINVWTW-SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGV 337 (514)
Q Consensus 260 ~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (514)
-..+....+++.. ..+......+.....+..+..++..++ +.++.-+.+.|-..+|...+..+... .+|+...|..+
T Consensus 422 ~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~m 500 (568)
T KOG2396|consen 422 VCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKM 500 (568)
T ss_pred hcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHH
Q ss_pred H--HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 338 L--CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 338 l--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+ ..-..+-+..-+..+|+.+...+| .|+..|.-.+..=...|..+.+-.++-++
T Consensus 501 iq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 501 IQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.62 E-value=8.4 Score=30.24 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=23.8
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKAC 139 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (514)
...|.-.+|-.+|.+|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3346667788888888888888876 66766553
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.10 E-value=9.6 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.+.-++.+.|+ ++.|.+..+.+.+++|++..
T Consensus 6 ~lAig~ykl~~---Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGE---YEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHHhhCCCcHH
Confidence 35568899999 99999999999999999764
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.70 E-value=28 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.|+..+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555666666666655555554
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=66.27 E-value=1.1e+02 Score=28.16 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHcCChHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a 315 (514)
...|.-|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34677778888888876643
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.95 E-value=39 Score=24.38 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHH
Q 046312 176 SCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
..|+.+.|.++++.++ +....|...+.++...|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666666654443
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.60 E-value=78 Score=26.61 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHhh----CCCCc-hHHHHHHHHHHHhc---
Q 046312 312 AEEALELFSNMKNSSISPNYVT---FLGVLCACNHAGMVEDGYRYFHEMEHVH----GIKPM-RIHYHTMADILARA--- 380 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~--- 380 (514)
++.|.+.++.-...+ +.|... |...+.-+++.....++..++++...++ .+.|+ ...+..+..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666665544432 233333 3334444445566677878888776643 46777 45677777776543
Q ss_pred -CCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 381 -GHLKEAYTFIMNM-------P-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 381 -g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
.+..+|.+.|++. . ..|+...|+.-+.. ..+|-++..++.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~---------~~kap~lh~e~~~ 135 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM---------AAKAPELHMEIHK 135 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH---------HHTHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH---------HHhhHHHHHHHHH
Confidence 3444555555544 3 67888888755432 3335555555544
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.35 E-value=39 Score=26.56 Aligned_cols=71 Identities=8% Similarity=0.099 Sum_probs=44.4
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 385 EAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE--LEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 385 ~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
++...|.... .+.|..-....+..... .+.+.++++.+.. ++..-+..|...+..+...|++++|.++++.
T Consensus 51 r~~~~f~~~~~Y~nD~RylkiWi~ya~~------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 51 RCIRKFKDDERYKNDERYLKIWIKYADL------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHTTSGGGTT-HHHHHHHHHHHTT------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhhhHhhcCCHHHHHHHHHHHHH------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3344444333 44455444444433332 3348888888765 4455566788999999999999999999875
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.27 E-value=27 Score=24.62 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=33.0
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHH
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFI 390 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 390 (514)
.....++|+..|....++..-.++ -.++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888875222233 335667788888888888876653
No 381
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.36 E-value=77 Score=29.10 Aligned_cols=42 Identities=7% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH
Q 046312 115 WVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156 (514)
Q Consensus 115 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 156 (514)
++|+.|.+.++.|.-.++..+.-.+.+.=.+..+..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555566666655555555555555666666666554
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.35 E-value=95 Score=26.50 Aligned_cols=89 Identities=16% Similarity=-0.006 Sum_probs=46.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHH--HHHHHHHHHHcCChH
Q 046312 238 SACTELGNLSLGKWVHLQLIERGTVLN--CQLGTALIDMYAKCGAVGCARLLFSRMEEINVWT--WSAMILGLAQHGYAE 313 (514)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 313 (514)
..+...+++++|..-++.....-...+ ..+-..|.......|.+++|..+++....++-.. ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 334555666666655555443211111 1111233445556666777776666666554322 222334566677777
Q ss_pred HHHHHHHHHHHCC
Q 046312 314 EALELFSNMKNSS 326 (514)
Q Consensus 314 ~a~~~~~~m~~~g 326 (514)
+|..-|.+.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766654
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.22 E-value=1.2e+02 Score=27.52 Aligned_cols=28 Identities=14% Similarity=-0.160 Sum_probs=18.8
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
++.....+...|.+.|++.+|+..|-.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5566777778888888888887766443
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.75 E-value=58 Score=23.51 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 315 (514)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555522 22222222222224466666666666666 5666666667766666654444
No 385
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.10 E-value=18 Score=37.22 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHH
Q 046312 209 LWLGEAVGYFVKMKDLGFEPDETTML 234 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~p~~~t~~ 234 (514)
|++.+|.+.+-.+...+..|...-..
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp --------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 44555555555555444444444333
No 386
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.83 E-value=2.6e+02 Score=30.79 Aligned_cols=256 Identities=10% Similarity=-0.056 Sum_probs=141.0
Q ss_pred HHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
..+.+.+..+|...-...+..+.+.+..+ +...+..+.+ .++...-...+.++.+.+........+..+... +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 34555556777777777788777777544 4455555553 334444445555554443221122233333332 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
+..+-...+.++...+.. ....+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 556666666666654321 12344555666777766667777776655432 22222 24555555556666666
Q ss_pred cCcHHH-HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 344 AGMVED-GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 344 ~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
.+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+...++...-...+.++...+. -+ +.
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~~-a~ 840 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA---DV-AV 840 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc---cc-hH
Confidence 655432 3344444443 466777778888888888766554445444445677666667777777665 22 22
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 423 EVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+..+.+ +| +..+-...+.++.+.+....+...+....+
T Consensus 841 ~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 33322221 22 344566777777775434456666655543
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.75 E-value=2e+02 Score=29.47 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHhCCCCCcchHHHHH--HH-HHcCCCHHHHHHHhhccCC--------CChhhHHHHHHHHHhCC----
Q 046312 145 LNEGMQVQANVTKSGLDSDVYTNNNLV--RF-YGSCRRKRDACKVFDDMCE--------RSVVSWNVIITVCVENL---- 209 (514)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~---- 209 (514)
...|.++++...+.|. ........++ .+ +....+.+.|..+|+...+ -+....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4567777777777662 1111111111 12 3355677777777766632 12334445555555532
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhC
Q 046312 210 -WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE-LGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 210 -~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~ 260 (514)
+.+.|+.++.+.-+.| .|+...+...+.-... ..+...|.++|....+.|
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 4455667766666665 4444443333332222 234556666666666665
No 388
>PRK10941 hypothetical protein; Provisional
Probab=60.74 E-value=52 Score=29.89 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
+.+-.+|.+.++++.|+.+.+.+. ..| +..-+.--.-.|.+.|. ...|..-++.+.+..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCchhH
Confidence 345556777777777777777775 444 34445545555777777 777777777777777776643
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.11 E-value=91 Score=25.19 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 194 SVVSWNVIITVCVENLW-LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG 244 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 244 (514)
+...|..++.+..+..- ---+..+|+-|++.+.+++..-|..++.++.+..
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 44567777777655444 3345677777777777888888888888776543
No 390
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.72 E-value=84 Score=24.66 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 384 KEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL--EPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
+++.+.|.... .+.|..-....+.-.-..++ ..+++..+... +..-+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~~d------p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNCDE------PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC------HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444554444 44455444444433333344 67777777654 34445567799999999999999999986
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.64 E-value=1.4e+02 Score=27.30 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN-----SSISPNYVTFL 335 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 335 (514)
+++.....|..+|.+.+|.++-+...+ .+...|-.++..++..|+--.|..-++++.+ .|+..+...+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 445566789999999999999998886 3567788899999999998788777777654 36666655443
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.08 E-value=46 Score=25.30 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE----------INVWTWSAMILGLAQHGYAEEALELFSNMKN-----SSISPNYVT 333 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (514)
++|+.+|... +......+++.--. ....-|..|+..|...|..++|++++.+... ..-.+....
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~ 81 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGV 81 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCc
Q ss_pred HHHHHHHHhccCc
Q 046312 334 FLGVLCACNHAGM 346 (514)
Q Consensus 334 ~~~ll~~~~~~~~ 346 (514)
...++....+.|.
T Consensus 82 ~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 82 KETIVQYLQKLGN 94 (108)
T ss_pred hhHHHHHHHhCCh
No 393
>PRK10941 hypothetical protein; Provisional
Probab=58.95 E-value=53 Score=29.87 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 402 LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.+.|-.+|...++ ++.|.++.+.+..+.|+++.-+.--+-+|.+.|.+..|..=++...+...
T Consensus 184 l~nLK~~~~~~~~---~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQ---MELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 4566678899999 99999999999999999987777889999999999999999998876553
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.76 E-value=1.8e+02 Score=27.97 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=32.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMCE------RSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
.+.-+...|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|..+..+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566667777777777777666411 1233444555555555666666655555544
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.73 E-value=2.5e+02 Score=29.52 Aligned_cols=171 Identities=11% Similarity=0.134 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCc-CCHH----------HHHHHHHHHHHcCChHH
Q 046312 249 GKWVHLQLIERGTVLN---CQLGTALIDMYAKCGAVGCARLLFSRMEE-INVW----------TWSAMILGLAQHGYAEE 314 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~~~ 314 (514)
-..++.+|..+--.|+ ..+...++-.|-...+++...++.+.+++ ||.. .|...+.---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3345566665533333 34555666677777788888887777765 3221 12222222334577788
Q ss_pred HHHHHHHHHHC-C-CCCCHHH-----HHHHH--HHHhccCcHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHH-----
Q 046312 315 ALELFSNMKNS-S-ISPNYVT-----FLGVL--CACNHAGMVEDGYRYFHEMEHVHGIKPMRIH---YHTMADIL----- 377 (514)
Q Consensus 315 a~~~~~~m~~~-g-~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~----- 377 (514)
|+...-.|.+. | +.||... |.-+. ..|...+..+.|...|++.- .+.|+... +..|+.+-
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 88877777663 2 5566432 22221 33455566777888887765 44665432 33333221
Q ss_pred ----------------HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 378 ----------------ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 378 ----------------~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.+.|..+...+.|+ +.+ .+.+-...++ +.++.++.+.+.+++|..
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWd-------V~~---y~~asVLAnd---~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWD-------VAT---YFEASVLAND---YQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHh-------HHH---hhhhhhhccC---HHHHHHHHHHHhccCCce
Confidence 22222222222222 111 2344455566 788888888888887653
No 396
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.37 E-value=1.4e+02 Score=29.88 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 49 AQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 49 ~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
..+...|+..+......+++. ..|+...|+.+++.... .....++..+...+ |+ .
T Consensus 191 ~i~~~Egi~~e~eAL~~Ia~~----S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~l-------------------g~-~ 246 (484)
T PRK14956 191 KLCKIENVQYDQEGLFWIAKK----GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI-------------------GY-H 246 (484)
T ss_pred HHHHHcCCCCCHHHHHHHHHH----cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHh-------------------CC-C
Confidence 344456787788887777766 35888888888877431 11122333222211 22 2
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDV 164 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 164 (514)
+...+..+++++...+....|..+++++.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4445555666665555566888888888888866543
No 397
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.22 E-value=1.7e+02 Score=27.34 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=16.2
Q ss_pred ChHHHHHHHccc-CCCCCcccHHHHHHHH
Q 046312 77 NLTYARSILCNY-VNDSVPIPWNNLIRGY 104 (514)
Q Consensus 77 ~~~~A~~~~~~~-~~~~~~~~~~~li~~~ 104 (514)
++..+..++..+ +.+.+...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 566677777777 5466666666665543
No 398
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.15 E-value=83 Score=23.81 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++|..|.+.+...+. ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35566666666665553 233333334455666777777733333333466666655433 456666666666666655
Q ss_pred CC
Q 046312 325 SS 326 (514)
Q Consensus 325 ~g 326 (514)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.76 E-value=46 Score=20.79 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=20.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 307 AQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666777766666666666655543
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.51 E-value=52 Score=33.59 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 046312 301 AMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 301 ~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|+.+|..+|++-.+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 344445555555555544444443
No 401
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.05 E-value=76 Score=24.81 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 215 VGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 215 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
.+-++......+.|+....-..+++|.+.+|+..|.++++-+...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344455555566777777777777777777777777777766544
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.92 E-value=35 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 046312 372 TMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+|.+|...|++++|.+.++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555544443
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.21 E-value=3.4e+02 Score=29.98 Aligned_cols=158 Identities=8% Similarity=-0.072 Sum_probs=72.5
Q ss_pred hccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHhCCCCchh
Q 046312 188 DDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL-GKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 266 (514)
..+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+..+.+ .++..
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHH
Confidence 33344455444445555544433321 111111 3344444445555555444322 2222333322 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHH-HHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 267 LGTALIDMYAKCGAVGCARL-LFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 345 (514)
+-...+.++.+.|..+.+.. +...+.+++...-...+.++...+. +++...+..+.+ .|+...-...+.++.+.+
T Consensus 791 VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 791 VRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccC
Confidence 55666666666665544422 3333344555555555566655554 334444444443 345555555555565542
Q ss_pred cHHHHHHHHHHHHH
Q 046312 346 MVEDGYRYFHEMEH 359 (514)
Q Consensus 346 ~~~~a~~~~~~~~~ 359 (514)
.-..+...+....+
T Consensus 867 ~~~~a~~~L~~al~ 880 (897)
T PRK13800 867 GDPAARDALTTALT 880 (897)
T ss_pred CCHHHHHHHHHHHh
Confidence 23344455555443
No 404
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.07 E-value=66 Score=23.11 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHH
Q 046312 149 MQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
..++..+.+.|+- +....-...+...+.++|.++++.++.++..+|.....++...|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455566655532 2222223334455667777777777777777777777777666654443
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.29 E-value=36 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.--..+|.++.+.|++++|.++++.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445555555555555555555443
No 406
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.08 E-value=1.8e+02 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHH
Q 046312 199 NVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m 221 (514)
.-++..|.+.|-.+.|.++.+.+
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444433
No 407
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.82 E-value=1.3e+02 Score=30.36 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
.|+...|...+..... ..|- .+....|...+.+.|..-+|-.++.+.. ....+.++-.+.+++....+ ++
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~---i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN---IS 693 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh---hH
Confidence 3566666666555542 2332 1223334555556666666666665543 23344556666667777777 77
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 420 VGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
.|.+.++.+.++.|+++..-..|...-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 7777777777777777665554444433
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.43 E-value=32 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV 235 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 235 (514)
-|+..|....+.||+++|++++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356777777888888888888888887776655555533
No 409
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.05 E-value=11 Score=36.53 Aligned_cols=94 Identities=9% Similarity=-0.015 Sum_probs=64.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY-HTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDA 414 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~ 414 (514)
+......+.++.|..++.++.+. .||-..| ..-..++.+.+++..|+.=+.++. ..|. ...|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34456678899999999999854 7864443 333477888999988876665554 4443 2333333345666666
Q ss_pred CCcchHHHHHHHHHHhcCCCCCc
Q 046312 415 KYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
..+|...++......|+++.
T Consensus 88 ---~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 ---FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred ---HHHHHHHHHHhhhcCcCcHH
Confidence 88888888888888998774
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.57 E-value=60 Score=20.27 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=15.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVL 237 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 237 (514)
+.|-.+++...+++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555544444443
No 411
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.56 E-value=2.5e+02 Score=27.45 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=32.1
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHcccCCCCCc----ccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046312 62 ILKELVRFCTLSSSKNLTYARSILCNYVNDSVP----IPWNNLIRGYAWSDRPREAVWVFIDMKR 122 (514)
Q Consensus 62 ~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 122 (514)
+.+.-...|. ......+..+.+---.....+ .-.|-++.-|...|+..+|-+..+++..
T Consensus 180 V~~~aeksyl--sap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 180 VINTAEKSYL--SAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHhhcc--CCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 4444444555 455555555544332211111 1245666777888888888887776643
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.74 E-value=94 Score=31.86 Aligned_cols=90 Identities=7% Similarity=0.013 Sum_probs=52.3
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhC--CCCCcchHHHHHHHHHcCCCHH------HHHHHhhcc-CCCChhhHHHHHH
Q 046312 133 PFVLKACAEISGLNEGMQVQANVTKSG--LDSDVYTNNNLVRFYGSCRRKR------DACKVFDDM-CERSVVSWNVIIT 203 (514)
Q Consensus 133 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~------~A~~~~~~~-~~~~~~~~~~li~ 203 (514)
.+++.+|...|++-.+.++++...... -+.=...+|..|+-..+.|.++ .|.+++++. ..-|..||..++.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 378888888888888888888877553 1111234566666667777653 344444444 4456667776666
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 046312 204 VCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~ 222 (514)
+-..--+..-.+-++.+.+
T Consensus 112 ~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hhcChHhHHhccHHHHHHH
Confidence 5544333333333444443
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.67 E-value=1.1e+02 Score=24.70 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
.+.+.+++.|++++..= ..++..+.+.++.-.|..+++++.+.+...+..|...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455666777766543 3456666666666888888888888877776666655566666555
No 414
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.62 E-value=5.7e+02 Score=31.22 Aligned_cols=139 Identities=8% Similarity=-0.043 Sum_probs=91.2
Q ss_pred CCCChHHHHHHHcccCC---CCCc--ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHH
Q 046312 74 SSKNLTYARSILCNYVN---DSVP--IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEG 148 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~---~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 148 (514)
+++.+..|...|+.-.. ..+. .-|-.+...|+.-++++...-+...-.. +. .....|-.....|++..|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHHhhccHHHH
Confidence 68888889888888321 1111 2344555588888999887777664111 12 233345566778999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHH-HHHHHHHhCCChhHHHHHHH
Q 046312 149 MQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWN-VIITVCVENLWLGEAVGYFV 219 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~a~~~~~ 219 (514)
...|+.+.+.+ ++...+++.++......|.++.+.-..+-... +....|+ .-+.+-.+.++|+.....+.
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999998775 44477788888777778888887776666632 2233333 33455577888887776654
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=2.1e+02 Score=26.14 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=72.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETT-------MLVVLSACTELGNLSLGKWVHLQLI----ERGTVLNCQLGT 269 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 269 (514)
+.+-..+.+++++|+..|.+....|+..|..+ ...+...|...|+...--+...... .-.-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34456677889999999999988887766544 4445666777776655444333222 111122334445
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCc----C-----CHHHHHHHHHHHHHcCChHHHHHHHH----HHHHCCCCCCHHHH
Q 046312 270 ALIDMYAKC-GAVGCARLLFSRMEE----I-----NVWTWSAMILGLAQHGYAEEALELFS----NMKNSSISPNYVTF 334 (514)
Q Consensus 270 ~li~~~~~~-g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~ 334 (514)
+|++.+... ..++.-+.+.....+ . ....-..++..+.+.|++.+|+.+.. ++.+..-+|+..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555554332 234444444443332 1 11222345666777777777776543 33444455554443
No 416
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.71 E-value=2.1e+02 Score=26.08 Aligned_cols=159 Identities=8% Similarity=-0.024 Sum_probs=83.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCcHHHHHHHHHHHH---HhhCCCCchHHHHH
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVT-------FLGVLCACNHAGMVEDGYRYFHEME---HVHGIKPMRIHYHT 372 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~p~~~~~~~ 372 (514)
..-..+.+++++|+..+.++...|+..+..+ ..-+...|...|+...-.+...... ..+.-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445667788888888888888877666443 3445556666666554433332221 11111222333444
Q ss_pred HHHHHHh-cCCHHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHH----HhcC--CCCCc
Q 046312 373 MADILAR-AGHLKEAYTFIMNMP---FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRL----LELE--PRGSQ 437 (514)
Q Consensus 373 li~~~~~-~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~----~~~~--p~~~~ 437 (514)
|+..+-. ...++.-+++..... .+-. ...=.-++..+.+.|. +..|.....-+ .+++ |+-..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~---YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK---YSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHhhcCccceee
Confidence 4444432 223344444433321 0000 1111235566677777 66666554433 3333 34445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..-..+|.+..+..++..-+-..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 566667777777777777777777774
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.24 E-value=4.2e+02 Score=29.34 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhcC--CHHHHHHHHHhcCcC
Q 046312 265 CQLGTALIDMYAKCG--AVGCARLLFSRMEEI 294 (514)
Q Consensus 265 ~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 294 (514)
......++.+|.+.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 334456677777777 677777777766654
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.14 E-value=1.3e+02 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=11.7
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 046312 340 ACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~ 358 (514)
.|.+.|.+++|.++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4556666666666666655
No 419
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=47.98 E-value=59 Score=23.36 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHH
Q 046312 45 YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREA 113 (514)
Q Consensus 45 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 113 (514)
..++..+.+.|+-.+. .. -..-+ ..-+.+.|.++++.++ .+.+.+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~-~~---e~I~~--~~tr~~q~~~LLd~L~-~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPD-MI---EEIQA--AGSRRDQARQLLIDLE-TRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHH-HH---HHHHc--CCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCchHHH
Confidence 4578888887743222 22 12222 4466888999999998 88889999999888887765444
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.73 E-value=40 Score=30.82 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (514)
.-|+..|..-.+.||+++|+.+++|.++.|+.--..+|-.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3466788888888888888888888888886655555543
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.62 E-value=98 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 115 WVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 115 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
++.+.+++.|++++..- ..+++.+...++.-.|..+++.+.+.+...+..|--.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455667777766654 34667777777778888888888887755555444444455655554
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.25 E-value=1.4e+02 Score=25.19 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhCCCCc--hHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM--RIHY-----HTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHD 413 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (514)
++.|..+|+.+.+... .|. .... ...+-.|.+.|.+++|.+++++.-..|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 5677777877776522 221 1111 2334568899999999999999864565555444444433333
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.25 E-value=2.8e+02 Score=26.78 Aligned_cols=26 Identities=4% Similarity=0.047 Sum_probs=14.9
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHH
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVT 156 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 156 (514)
.+.-+...|...|+++.|.+.+-+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 34455555666666666666665543
No 424
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.92 E-value=1.2e+02 Score=30.80 Aligned_cols=113 Identities=12% Similarity=-0.045 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
+-+-.++..|... +.|--...+..--.....|+...|.+.+...........-+..-.|.+...+.|-...|-.++...
T Consensus 590 e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 3344555555432 333333333333334456777777776666554432222223334555556666666666666654
Q ss_pred Cc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 292 EE---INVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 292 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.. ..+.++..+..++....+++.|++.|+...+.
T Consensus 669 l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 669 LAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 43 34556677777888888888888888887764
No 425
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.80 E-value=3.6e+02 Score=27.84 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=44.4
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-cccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGI 125 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 125 (514)
+.+..+..|++.+. .=+.++-..++.++. . . ...|..+++++...|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR---~~~~e~l~~l~~~~~-~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLR---TLSEEQLEQLWRQLY-E-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHH---hCCHHHHHHHHHHHH-h-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45667778888766 667778888888776 4 3 56788899999988876655555555555443
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.75 E-value=2.1e+02 Score=25.10 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=24.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
++.+.+.+...+++...++-++. -+-|...-..+++.|+-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 34444455555555555444432 12223344445555555555555544433
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=2.2e+02 Score=25.32 Aligned_cols=82 Identities=12% Similarity=-0.098 Sum_probs=49.4
Q ss_pred HHhcCCHHHHHHHHHhcCc--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE--INV-WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF-LGVLCACNHAGMVEDG 350 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a 350 (514)
|.....++.|+..|.+... |++ .-|..=+.++.+..+++.+..--++.++ +.||.+-- ..+-.+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4555667777776666543 554 3445556667777777777666666655 45665432 2333455566677777
Q ss_pred HHHHHHHH
Q 046312 351 YRYFHEME 358 (514)
Q Consensus 351 ~~~~~~~~ 358 (514)
+..+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77776663
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.98 E-value=2.9e+02 Score=26.51 Aligned_cols=142 Identities=7% Similarity=-0.097 Sum_probs=75.5
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHH
Q 046312 106 WSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACK 185 (514)
Q Consensus 106 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 185 (514)
..++++.-..++.+ .+-...++..+-..+...|+.+.|.+++++..-.- ..++......+..... ...-
T Consensus 22 ~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~--~g~~ 90 (360)
T PF04910_consen 22 QSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLT--SGNC 90 (360)
T ss_pred HccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccc--cCcc
Confidence 34455555555422 34455677777777888888888877777654210 0000000000000000 0000
Q ss_pred HhhccCCCChhhHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHH
Q 046312 186 VFDDMCERSVVSWNVI---ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACT-ELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~ 258 (514)
-++--...|...|-++ |..+.+.|.+..|+++-+-+...+..-|......+|..|+ +.++++--.++.+....
T Consensus 91 rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 91 RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 0000011244444443 4567788888888888888887765446666667777665 56667666666665544
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.00 E-value=3.1e+02 Score=26.55 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=36.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDET--TMLVVLSACT--ELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 259 (514)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788899999999888876 555544 3444555554 345666777777766554
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=2.8e+02 Score=25.98 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred CChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHH
Q 046312 76 KNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANV 155 (514)
Q Consensus 76 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 155 (514)
++.+....+++.+. ..+...|-..+.. +..++.|...++.+..+ ....+++-.+..+..
T Consensus 36 ~~~~~~e~l~~~Ir-d~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~ieda 94 (393)
T KOG0687|consen 36 QKAAAREKLLAAIR-DEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDA 94 (393)
T ss_pred cCHHHHHHHHHHHH-hcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHH
Q ss_pred HHh-CCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc--------CCCChhhHHHHH-HHHHhCCChhHHHHHHHHHHHCC
Q 046312 156 TKS-GLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM--------CERSVVSWNVII-TVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 156 ~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
.+. |-.--...+.....-|++-||.+.|.+.+++. .+-|+..+.+-+ -.|....-..+-++..+.+.+.|
T Consensus 95 eenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 95 EENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Q ss_pred CCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 226 FEPDETTMLVVLSA--CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 226 ~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
...+...-.-.-.+ |....++.+|-.+|-+....--......|..++..-.-.|
T Consensus 175 gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 175 GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 431
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=43.80 E-value=4.7e+02 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
.+.-.+.|.++..---.-|..++..-...+...|++..+.+++.++.+..+-.++...|..++..+...|-- -...+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344455555555421123445555555556677888899999988888777788888888777777666643 4444444
Q ss_pred hC
Q 046312 392 NM 393 (514)
Q Consensus 392 ~~ 393 (514)
.+
T Consensus 1291 ~~ 1292 (1304)
T KOG1114|consen 1291 NW 1292 (1304)
T ss_pred hh
Confidence 44
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.77 E-value=2.7e+02 Score=25.81 Aligned_cols=42 Identities=7% Similarity=-0.034 Sum_probs=21.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
++|+.|...++.|.-.+|.-+.-.+.+.=.+..+..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344455555555555555555444555555555555555554
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.43 E-value=2.6e+02 Score=25.59 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH--
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKN----SSISPNYVTF-LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI-- 368 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-- 368 (514)
...|..+..-|++.++.+.+.++.++..+ .|.+.|...- ..+.-.|....-+++-++..+.+.++ |...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 34566677777777777777776665544 3555553321 12223344445566667777777776 6555432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 369 --HYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 369 --~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+|..+- +....++.+|-.+|-+.
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 233222 12334566776666554
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.33 E-value=4.6e+02 Score=28.32 Aligned_cols=216 Identities=13% Similarity=-0.054 Sum_probs=119.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchh-------HHHHHH-HHHHhcCCHHHHHHHHHhcCc--------CCHHHHHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQ-------LGTALI-DMYAKCGAVGCARLLFSRMEE--------INVWTWSAMIL 304 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 304 (514)
....++++|..++.++...-..|+.. .++.+- ......|++++|.++-+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678999999998887653333222 222221 223457888998888776653 45677778888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHHhccCcHHH--HHHHHHHHHHhhCCC-----CchHHHHH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFL---GVL--CACNHAGMVED--GYRYFHEMEHVHGIK-----PMRIHYHT 372 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll--~~~~~~~~~~~--a~~~~~~~~~~~~~~-----p~~~~~~~ 372 (514)
+..-.|++++|..+.....+.--.-+...|. .+. ..+...|.... ....+......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8889999999999988776642222333222 221 23555673333 233333333221111 11233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----C-CCCC--HHH--HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-Cch-HH-
Q 046312 373 MADILARAGHLKEAYTFIMNM----P-FQPN--PIV--LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-SQN-LV- 440 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~----~-~~p~--~~~--~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~-~~- 440 (514)
+..++.+ .+.+..-.... . ..|. ... +..|.......|+ .++|...++.+.....++ +.+ |.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd---l~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD---LDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444444 34333322222 1 2222 222 2367788889999 888888888877654322 222 22
Q ss_pred --HHH--HHHHhcCCHHHHHHHHHHH
Q 046312 441 --IVA--NKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 441 --~l~--~~~~~~g~~~~A~~~~~~m 462 (514)
.++ ..-...|+..++.....+-
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 222 2234668888887777663
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.85 E-value=90 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 046312 372 TMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666777777777777666
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.71 E-value=1.6e+02 Score=23.03 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
.+.++|..|...|+--. ..-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555544443322 2233334444444444554444443
No 437
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.32 E-value=2.8e+02 Score=25.51 Aligned_cols=113 Identities=9% Similarity=0.032 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046312 281 VGCARLLFSRMEE-----INVWTWSAMILGLAQHG--YAEEALELFSNMKN-SSISPNYVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 281 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
+.+|+++|+.... .|..+...+++...... ....-.++.+-+.. .|-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666662211 34455555555544411 22222233333332 2456777777888888888888888888
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 353 YFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 353 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+++......+..-|...|..+|+.....|+..-...+.++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88877753334556777888888888888888888877765
No 438
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.75 E-value=3.9e+02 Score=27.07 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHH---HHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE--INVWTW---SAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++.-|.+.+++++|..++..|.= .....| +.+...+.+..--++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3566678888888888888888763 122233 3334444444434444444444443
No 439
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.01 E-value=4.4e+02 Score=27.49 Aligned_cols=398 Identities=12% Similarity=0.061 Sum_probs=196.6
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCcc-----cHHHHHHHHHhCCCchHHHHHHHHHHHcCCC----CC
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVN---DSVPI-----PWNNLIRGYAWSDRPREAVWVFIDMKRRGIK----PT 128 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~ 128 (514)
.++-.+...+.. ...+++.|+..+++... .++.. ....++..+.+.+... |...+++..+.--. +-
T Consensus 60 ~~~l~la~iL~~-eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 60 RVRLRLASILLE-ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 455555554432 68899999999987632 22211 1224556666665544 99988887653111 11
Q ss_pred cchHHHH-HHHHhccCCchHHHHHHHHHHHhC---CCCCcchHHHHHHHHH--cCCCHHHHHHHhhcc----C-------
Q 046312 129 EFTYPFV-LKACAEISGLNEGMQVQANVTKSG---LDSDVYTNNNLVRFYG--SCRRKRDACKVFDDM----C------- 191 (514)
Q Consensus 129 ~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~----~------- 191 (514)
...|..+ +..+...++...|.+.++.+...- ..|...++..++.+.. +.+..+++.+.++++ .
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 1223322 222223379999999998886543 2344445555555443 445555555555544 1
Q ss_pred --CCChhhHHHHHHH--HHhCCChhHHHHHHHHHHH---CC-CC--------------------------CCH-------
Q 046312 192 --ERSVVSWNVIITV--CVENLWLGEAVGYFVKMKD---LG-FE--------------------------PDE------- 230 (514)
Q Consensus 192 --~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~---~~-~~--------------------------p~~------- 230 (514)
.|...+|..+++. +...|+++.+...++++.+ .. -. |..
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 1234566666654 4567777676666555422 10 00 101
Q ss_pred --HHHHHHHHH--HhccCChHHHHHHHHHHHHh--------CCCCch--------hHHHHHHH---------HHHhcCCH
Q 046312 231 --TTMLVVLSA--CTELGNLSLGKWVHLQLIER--------GTVLNC--------QLGTALID---------MYAKCGAV 281 (514)
Q Consensus 231 --~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~--------~~~~~~--------~~~~~li~---------~~~~~g~~ 281 (514)
..+..++.+ .+..+..+.+.+++++..+. ...+.. ..+...+. ..+-.|++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 111122222 23445554666665554321 111111 11111111 22456788
Q ss_pred HHHHHHHHhcCc-----CC-----HHHHHHHH--HHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHH--H
Q 046312 282 GCARLLFSRMEE-----IN-----VWTWSAMI--LGLAQHGYAEEALELFS--------NMKNSSISPNYVTFLGVL--C 339 (514)
Q Consensus 282 ~~A~~~~~~~~~-----~~-----~~~~~~li--~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~~ll--~ 339 (514)
..|...++.+.+ ++ ...+...+ -.+...|+.+.|...|. .....+...+..++..+= .
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 888888887764 11 12222223 33456799999999997 444444444444443321 1
Q ss_pred HHhc--cCcHHH--HHHHHHHHHHhhCCCCc--hHHHH-HHHHHHHhcC---------CHHHHHHHH-HhCCCC-CCHHH
Q 046312 340 ACNH--AGMVED--GYRYFHEMEHVHGIKPM--RIHYH-TMADILARAG---------HLKEAYTFI-MNMPFQ-PNPIV 401 (514)
Q Consensus 340 ~~~~--~~~~~~--a~~~~~~~~~~~~~~p~--~~~~~-~li~~~~~~g---------~~~~A~~~~-~~~~~~-p~~~~ 401 (514)
.+.. ....++ +..+++.+.....-.|+ ..++. .++.++.... .+.++++.. +..... --..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 1221 222223 66677666543222333 22333 3333332211 123344444 333211 11122
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcC---CCCC-chHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 402 LRALLSASSIHDAKYQDGVGNEVRRRLLELE---PRGS-QNLV-----IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
++ ++..-...|+ .++..+.......+- |+.. ..|. .+.+.|...|+.++|.....+...
T Consensus 538 L~-lm~~~lf~~~---~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LN-LMGHRLFEGD---VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HH-HHHHHHHcCC---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33 3333333566 666555555544433 2222 2342 556668889999999999887653
No 440
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.93 E-value=3.6e+02 Score=26.44 Aligned_cols=234 Identities=11% Similarity=-0.044 Sum_probs=119.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
-|+++...| ..+++.+-..... .++...+.....++....+......+.+.+. .++..+......++...+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 366777777 4566666555533 2333344443334432222222333333332 3455567777777777777
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
.+....+...+...+.......+.++...+. + +...+....+ .+|...-...+.++...++.+..-. +..+..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~-L~~al~- 188 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSEST-LRLYLR- 188 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH-HHHHHc-
Confidence 6666666655555666555555566555432 2 2333333333 4555555666666666665433333 222221
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHh-cCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSR-MEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
..|..+-..-+.+....|. ..|...+.. ..+++......+...+...|. +++...+..+.+. +. +-...+
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~~a~ 259 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRREAL 259 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHHHHH
Confidence 3455566666666666766 455554444 444444444444443333333 3555555555543 12 444555
Q ss_pred HHHhccCcHHHHHHHHHHH
Q 046312 339 CACNHAGMVEDGYRYFHEM 357 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~ 357 (514)
.++...|+...+.-+.+.+
T Consensus 260 ~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHcCCcchHHHHHHHh
Confidence 6666666666555544444
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.75 E-value=59 Score=34.42 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=12.5
Q ss_pred cCCcChHHHHHHHHHHHH
Q 046312 490 DSQVELAGIYQILETLNL 507 (514)
Q Consensus 490 ~~~~~~~~a~~~~~~m~~ 507 (514)
..+|.-++|.++.++...
T Consensus 764 ~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 764 AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhcCcHHHHHHHHHhhcc
Confidence 567777777777776654
No 442
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.68 E-value=2.3e+02 Score=24.19 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCC--------------CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHVHGI--------------KPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+++..|-+..++.+++++++.+.+. .+ .+.-...|.....+.+.|.+|-|+.++++-.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 3455566677777777777776653 22 2223345556666777777777777777653
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.66 E-value=1.1e+02 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 395 FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
..|+...|..++..+...|+ .++|++..+.+..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGD---PEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 66888888888888888888 8888888888888877
No 444
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=39.73 E-value=3.8e+02 Score=26.31 Aligned_cols=235 Identities=8% Similarity=-0.100 Sum_probs=140.0
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHH
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAV 215 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 215 (514)
++++...| +.+...+-..... .++...+.....++....+......+.+.+..++.......+.++...+..+-..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 66777777 5667766666544 2344444444444443444343566667777777778888899998887766554
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN 295 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 295 (514)
. +..+.+. ++.......+.++...+. + +...+....+ .++..+-..-+.++...+..+..-.+..-....|
T Consensus 121 ~-L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~ 191 (410)
T TIGR02270 121 W-LEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSD 191 (410)
T ss_pred H-HHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCC
Confidence 4 4445442 344455556677665442 2 3333344433 4566677777788887777654444444445578
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
...-..-+.+....|. .+|...+..... .++......+.......|. +++...+..+.++ +. +-...+.
T Consensus 192 ~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~--vr~~a~~ 260 (410)
T TIGR02270 192 PEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AA--TRREALR 260 (410)
T ss_pred HHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hh--hHHHHHH
Confidence 7777778888888888 667666665333 2222232333333333233 3666666666542 22 4556777
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 046312 376 ILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~ 394 (514)
++.+.|+...+.-+.+.|.
T Consensus 261 AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHcCCcchHHHHHHHhc
Confidence 8888888887777777775
No 445
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.37 E-value=3.8e+02 Score=26.27 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CcCCHHHHHHHH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM---EEINVWTWSAMI 303 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 303 (514)
..+......++..+ .|+...+..+++.+...+...+.... .+++... .+.+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v----------------~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELL----------------EEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHH----------------HHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 68888888888776554222222221 1222211 112222344444
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 304 LGLAQ---HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 304 ~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
+++.+ .++.+.|+.++..|.+.|..|....-..++.++..
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 54444 57899999999999998887776555555444433
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.32 E-value=2.5e+02 Score=24.06 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcC-----------CC----CCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELE-----------PR----GSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
++..|.+..+ +.++.++++.+.++. |. .....+.-+..+.+.|..|.|..++++
T Consensus 138 ~m~~Yhk~~q---W~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQ---WSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4445555555 666666666665543 11 123456778889999999999999983
No 447
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.22 E-value=1.1e+02 Score=22.38 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCCCCchH---------HHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 409 SSIHDAKYQDGVGNEVRRRLLELEPRGSQNL---------VIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+.++ +..|.+.+.............. ..++......|++++|...+++..+
T Consensus 8 ~~~~~d---y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGD---YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCC---HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 448
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.22 E-value=2.4e+02 Score=27.73 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-------------CHHHHHHHHHHH-----H
Q 046312 246 LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-------------NVWTWSAMILGL-----A 307 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~-----~ 307 (514)
+++-.++++.+.+.| .......-|++|.+.+++++|..-+++-.+. .+.....++... .
T Consensus 70 ~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQv 146 (480)
T TIGR01503 70 LDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQI 146 (480)
T ss_pred HHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeec
Confidence 445555555555554 1113334466666777777776666654321 122233333321 2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 308 QHGYAEEALELFSNMKNSSISPN---YVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
++|. ..+..+++.+...|+... ..+|+. -|++.=-++++...|+.+-
T Consensus 147 RHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqyvd 196 (480)
T TIGR01503 147 RHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCD 196 (480)
T ss_pred cCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHH
Confidence 2333 235556666666664432 333432 2444445566666555443
No 449
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.69 E-value=45 Score=19.37 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.+..++-.+...|++++|+++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35678888999999999999954
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.63 E-value=1.4e+02 Score=24.84 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=31.6
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|--..+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445555444433 33444444445556666666666666555555544455556665554
No 451
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=1.3e+02 Score=28.05 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP----FQP--NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
|.-=.+-|.+..++..|...|.+.. ..| +.+.|+.-..+-...|+ +..+..-...+..++|....+|..=+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N---yRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN---YRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3334556778888899988887763 233 34667666666667777 88888888888999999888888888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 046312 444 NKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m 462 (514)
.++....++++|....++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888877777666554
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.42 E-value=2.9e+02 Score=24.60 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHh
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACT-ELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 259 (514)
.++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+++++..+...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 355667778888888888888888877777666666555553 234455566666655443
No 453
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=2e+02 Score=25.62 Aligned_cols=47 Identities=13% Similarity=-0.113 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+-++.+-...+....|.+..+|..=+.+....=+.++|..-|....+
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555544
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.31 E-value=3.3e+02 Score=25.30 Aligned_cols=111 Identities=14% Similarity=-0.032 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046312 347 VEDGYRYFHEMEHVHGI---KPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNE 423 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~ 423 (514)
.+.|.+.|+.......- ..+......+.....+.|..++-..+++.....++......++.+.....+ .+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d---~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPD---PELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S----HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCC---HHHHHH
Confidence 46777888888763111 345556666777777888866666666666555677888888888888888 777788
Q ss_pred HHHHHHhcC-CCCCchHHHHHHHHHhcCC--HHHHHHHHHH
Q 046312 424 VRRRLLELE-PRGSQNLVIVANKYAEVGM--WEKVSNVRRF 461 (514)
Q Consensus 424 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 461 (514)
+++.+..-+ -...+. ..++..+...+. .+.+.+.++.
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 888887733 222233 344444443333 3666666554
No 455
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.01 E-value=65 Score=17.17 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
.+.+..+++++.+..|.++..|...+.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 556677777777766666665555443
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.90 E-value=3.4e+02 Score=25.35 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 046312 301 AMILGLAQHGYAEEALELFSNMKNSSISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADI 376 (514)
Q Consensus 301 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 376 (514)
.+..+-.+.|+..+|.+.|+++.+. .|- ......++.+|.....+.++..++.+.-+. ..+.+ ...|++-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYTaAL-- 354 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTAAL-- 354 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHHHH--
Confidence 3444555678888888888887653 221 122456777777777676666666555432 22222 23343211
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 377 LARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
. ++..+-++ +.|+..+-..|-.+ -..|.+++.++.+.+|.-+
T Consensus 355 -L------K~RAVa~k--Fspd~asrRGLS~A---------E~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 355 -L------KTRAVSEK--FSPETASRRGLSTA---------EINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred -H------HHHHHHhh--cCchhhhhccccHH---------HHHHHHHHHHHhhcCCCCc
Confidence 1 11222222 23554443333222 2346777777788887644
No 457
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.33 E-value=1.1e+02 Score=21.65 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.4
Q ss_pred CCCChHHHHHHHc
Q 046312 74 SSKNLTYARSILC 86 (514)
Q Consensus 74 ~~g~~~~A~~~~~ 86 (514)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4555555555555
No 458
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=37.31 E-value=1.4e+02 Score=21.66 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCCC-CCcccHHHHHHHHHhCCCchHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVND-SVPIPWNNLIRGYAWSDRPREA 113 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 113 (514)
...+..... ..|+.+.|..+++.+. . ..+-.|..++.++.+.|....|
T Consensus 37 ~e~I~a~~~--~~g~~~aa~~Ll~~L~-~~r~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 37 KEQILAEER--NKGNIAAAEELLDRLE-RCDKPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHHh--ccChHHHHHHHHHHHH-HhccCCcHHHHHHHHHHcCCccHH
Confidence 333444443 4578888888888777 4 5566677778877777765444
No 459
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.00 E-value=1.1e+02 Score=20.73 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
+....++.++..+++..-.++++..+.++...|. .+..+|..-++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3344455555555555555555555555555542 3334443333333
No 460
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.91 E-value=1e+02 Score=22.53 Aligned_cols=59 Identities=7% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCC
Q 046312 44 LYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 44 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 109 (514)
...++..+.+.|+-.+.. +.. .-+ ..-+.+.+.++++.++ ...+.+|..+..++...|.
T Consensus 22 ~~~v~~~L~~~gvlt~~~-~~~---I~~--~~t~~~k~~~Lld~L~-~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTDSM-AES---IMA--KPTSFSQNVALLNLLP-KRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCHHH-HHH---HHc--CCCcHHHHHHHHHHHH-HhChhHHHHHHHHHHhcCh
Confidence 345777788777443322 222 222 4456788889999988 8888899999888876554
No 461
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.33 E-value=3.1e+02 Score=24.38 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 348 (514)
.--++.|...-++.-|-..++++.+|=..- ..+--|.+..+.+--.++.+-....++.-+......++ +...|++.
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEPIQSR--CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEPIQSR--CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhhHHhh--hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Confidence 334555555555555555555554432111 11112333333332333333333344444444444443 34456666
Q ss_pred HHHHHHHHHHH
Q 046312 349 DGYRYFHEMEH 359 (514)
Q Consensus 349 ~a~~~~~~~~~ 359 (514)
+|...++.-..
T Consensus 210 QalNnLQst~~ 220 (333)
T KOG0991|consen 210 QALNNLQSTVN 220 (333)
T ss_pred HHHHHHHHHhc
Confidence 66666555544
No 462
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.26 E-value=1.3e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=10.1
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m 322 (514)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555544
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.91 E-value=1.9e+02 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.074 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCcCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 282 GCARLLFSRMEEINVWT--WSAMILGLAQHGYAEEALELFSNMKN----SS-ISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 282 ~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
.+|.+.|......-... --.+..-|.+.|++++|..+|+.+.. .| ..+...+...+..++...|+.+....+
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555555544432222 22344556666666666666666532 12 122233344444444555555544443
No 464
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.69 E-value=96 Score=21.00 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
+....++.++..+++..-.+.++..+.++.+.|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445566666666666666666666666666653 34455544444443
No 465
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.68 E-value=2.1e+02 Score=28.03 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=61.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc---CC
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA---GH 382 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~ 382 (514)
+...|++.+|+..|+.++.. ..+.......+.+++.+++....+- +....+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 46789999999999987642 2222222233344444444443320 001111111111 11
Q ss_pred H---HHHHH---HHHhCCCCCCH--HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 383 L---KEAYT---FIMNMPFQPNP--IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 383 ~---~~A~~---~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
. ++.++ +|......|.. .+...-+..+.+.++ +..|..+.+++++++|... ..++
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KN---f~tAa~FArRLLel~p~~~--------------~a~q 338 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKN---FITAASFARRLLELNPSPE--------------VAEQ 338 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTB---HHHHHHHHHHHHCT--SCH--------------HHHH
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHcCCCHH--------------HHHH
Confidence 1 22223 33333344543 445566666777777 9999999999999988642 2345
Q ss_pred HHHHHHHHH
Q 046312 455 VSNVRRFMK 463 (514)
Q Consensus 455 A~~~~~~m~ 463 (514)
|.++++...
T Consensus 339 ArKil~~~e 347 (422)
T PF06957_consen 339 ARKILQACE 347 (422)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 666666554
No 466
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.54 E-value=3.4e+02 Score=24.58 Aligned_cols=89 Identities=19% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHH
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEP-----DETTMLVVLSAC 240 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-----~~~t~~~ll~~~ 240 (514)
|..++-.|.|.=+...=..+|+.+..| ..++.-|.+.|+.+.|-.++--+...+ ... +...-..++...
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 333444444444444444455544322 255666777777777766665554332 111 223334455666
Q ss_pred hccCChHHHHHHHHHHHHhC
Q 046312 241 TELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~ 260 (514)
...++++.+.++.+-+...+
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HhcccHHHHHHHHHHHHHhC
Confidence 66677777777666665543
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.26 E-value=6.1e+02 Score=27.43 Aligned_cols=51 Identities=6% Similarity=-0.121 Sum_probs=32.2
Q ss_pred HHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
=..|.+.|++++|.++-+.-+..=..++-.-...|.+.+++..|-++|.++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 356778888888888766541111122333345667777888888888777
No 468
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.20 E-value=5.1e+02 Score=26.49 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=51.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACT-ELGNLSLGKWVHLQLIERG---TVLNCQLGTALIDMYAK 277 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~ 277 (514)
|..+.+.|.|..|.++-+-+.+....-|......+|..|+ +..++.-.+++++.....+ .-||-.--.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556677888888887777776654446666667777664 4556666666666554332 33444444455555554
Q ss_pred cCC---HHHHHHHHHhcC
Q 046312 278 CGA---VGCARLLFSRME 292 (514)
Q Consensus 278 ~g~---~~~A~~~~~~~~ 292 (514)
... -+.|...+.+..
T Consensus 429 ~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL 446 (665)
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 443 234444444443
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.05 E-value=7e+02 Score=28.08 Aligned_cols=128 Identities=14% Similarity=-0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHH
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIERGT---VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILG 305 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 305 (514)
+-|..+++.+-+.+..+.+.++-..+++.-. +.-..+++.+.+-....|.+-+|...+-.... ..-.+...++..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3466777888888888888887766665421 11245667788888888888888777665543 223455666666
Q ss_pred HHHcCChH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 306 LAQHGYAE------------EALE-LFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 306 ~~~~~~~~------------~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
++..|.++ +... +++..-+....-....|..|-..+...+++.+|-.+.-+..
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEya 1129 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYA 1129 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 77776653 3333 22222222211122345555555667788877766554443
No 470
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.93 E-value=1.8e+02 Score=21.21 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCC
Q 046312 176 SCRRKRDACKVFDDMCERSVVSWNVIITVCVENLW 210 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 210 (514)
...+.+++.++++.++.++..+|..+..++...+.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 44556777777777777777777777777755443
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.82 E-value=1.8e+02 Score=21.07 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 251 WVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
++|+.....|+..|+.+|..+++...-.=.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555544444444444444443
No 472
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.77 E-value=82 Score=30.85 Aligned_cols=101 Identities=14% Similarity=0.012 Sum_probs=57.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCc--CCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 046312 272 IDMYAKCGAVGCARLLFSRMEE--INVWTWS-AMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMV 347 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 347 (514)
.+.+.+.++++.|..++.++.+ ||...|- .=..++.+.+++..|+.=+.+.++.. |+ ...|..=..+|...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3445566677777777777765 4333332 22366677777777777666666532 33 22333333455555666
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
.+|...|+... .+.|+..-....+.-+
T Consensus 89 ~~A~~~l~~~~---~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVK---KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhh---hcCcCcHHHHHHHHHH
Confidence 66666666665 3466655555555444
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.72 E-value=3.2e+02 Score=24.05 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH----HHHHhcCCHHHHHHHHHh
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA----DILARAGHLKEAYTFIMN 392 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~ 392 (514)
|......|+.+.|......+... -+.-|...+-.|. --+.+.|..++|+++++.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44445566666666655555432 2333321111111 113455666666666543
No 474
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.49 E-value=3.2e+02 Score=26.95 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHcccCCCCCcccHHHHHHHHHh-----------CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 74 SSKNLTYARSILCNYVNDSVPIPWNNLIRGYAW-----------SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~-----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
+.=++++|....+.++ . ...|...+....+ .+.+++-+++++.+.+.| .+| .....+++|.+.
T Consensus 26 ~~vd~~eav~y~k~~p-~--~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~ 99 (480)
T TIGR01503 26 KDVDLQDAVDYHKSIP-A--HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQ 99 (480)
T ss_pred ccCCHHHHHHHHHhCC-c--cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeeccccc
Confidence 4447888888887776 2 1222222222222 234567777777777764 233 334457888888
Q ss_pred CCchHHHHHHHHHHHh
Q 046312 143 SGLNEGMQVQANVTKS 158 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~ 158 (514)
++++.|...+++-.+.
T Consensus 100 n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 100 NRYDEAAVGIKESIKA 115 (480)
T ss_pred ccHHHHHHHHHhhhhc
Confidence 8888888888776653
No 475
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.42 E-value=2.3e+02 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMPFQPNP-IVLRALLSASSIHDA 414 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~ 414 (514)
..+..++..++.=.|..++|.++++....-++- ..-.-++..|....+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~ 114 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKT 114 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCC
Confidence 334455556666666666666666666522222 122335555555555
No 476
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=2.7e+02 Score=26.17 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 046312 441 IVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m 462 (514)
.++..|...+++.+|..+...+
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L 154 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDL 154 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7889999999999998876654
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.25 E-value=94 Score=23.73 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=25.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL 145 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 145 (514)
++..+...+..-.|-++++.+.+.+...+..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4445555555556666666666655445555544445555555443
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.23 E-value=4.4e+02 Score=25.50 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHhcCc--CC-H--HHHHHHHHHHH--HcCChHHHHHHHHHHHHC
Q 046312 274 MYAKCGAVGCARLLFSRMEE--IN-V--WTWSAMILGLA--QHGYAEEALELFSNMKNS 325 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~--~~-~--~~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 325 (514)
.+.+.+++..|.++|+.+.+ ++ . ..+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44466777777777776654 11 1 23334444443 345666777777766543
No 479
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.37 E-value=1.3e+02 Score=29.39 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.8
Q ss_pred ecccCCcChHHHHHHHHHHH
Q 046312 487 SGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 487 ~~~~~~~~~~~a~~~~~~m~ 506 (514)
.-|..+|+++.-+++|+---
T Consensus 345 avyad~g~~~rCi~LWkyAL 364 (615)
T KOG0508|consen 345 AVYADSGEFERCIRLWKYAL 364 (615)
T ss_pred eeecCCccHHHHHHHHHHHH
Confidence 34899999999999887543
No 480
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.27 E-value=69 Score=28.08 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 374 ADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
..+..+.|+.+.|.+++.++. ..-+...|..+...-.+.|+ .+.|.++++...+++|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~---~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE---FDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc---HHHHHHHHHHHHcCCccc
No 481
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.98 E-value=1.9e+02 Score=20.91 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccC
Q 046312 42 KHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYV 89 (514)
Q Consensus 42 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~ 89 (514)
.+-.++++.....|+..|+.+|..++.... -+-..+....++..|-
T Consensus 25 ~eE~EL~ELa~~AGv~~dp~VFriildLL~--~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 25 AEEVELYELAQLAGVPMDPEVFRIILDLLR--LNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHHHHhCCCcChHHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 344589999999999999999999999988 6667777777777664
No 482
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.85 E-value=4e+02 Score=24.66 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=69.7
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHH
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVI 201 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l 201 (514)
+..+......++.. ..||...|+..++.+.......+. .. + ..+...++..+- -.++...+..+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~-~~---i-------t~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDE-IY---L-------NKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCC-Cc---c-------CHHHHHHHHhHHHhcccCCcchhHHH
Confidence 34455555555544 468888888888886542101111 00 0 112222222211 12344445556
Q ss_pred HHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhC
Q 046312 202 ITVCVE---NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN-----LSLGKWVHLQLIERG 260 (514)
Q Consensus 202 i~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~ 260 (514)
|+++.| -.+++.|+-.+.+|.+.|..|....-..++.++-..|. ...|...++....-|
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG 196 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLG 196 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 777665 46899999999999999988877777777777766653 223344444444444
No 483
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.61 E-value=5.1e+02 Score=25.78 Aligned_cols=230 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCcc--hHHHHHHH-----HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH-cCCCHHHHHH
Q 046312 114 VWVFIDMKRRGIKPTEF--TYPFVLKA-----CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG-SCRRKRDACK 185 (514)
Q Consensus 114 ~~~~~~m~~~~~~p~~~--~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~ 185 (514)
.++++.+.+.|..|+.. .....+.. .+..|+.+-+.-+++.-.... .++..-.+.|..+.. ..|+.+-+..
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred HhhccCCCChhhHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 186 VFDDMCERSVVSWN--VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTM--LVVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 186 ~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
+++.-...+..... +.+...+..|. .-.++.+.+.+.|..++...- .+.+..++..| -.++.+.+.+.|.
T Consensus 127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga 200 (480)
T PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGA 200 (480)
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCC
Q ss_pred CCchhHH--------HHHHHHHHhcCC--HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046312 262 VLNCQLG--------TALIDMYAKCGA--VGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS 328 (514)
Q Consensus 262 ~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 328 (514)
.++.... ...+...+..|. .+-+.-+++.-.. .|..-.+.|..+..... .++++.+.+.|..
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad 275 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGAN 275 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCC
Q ss_pred CCHHH--HHHHHHHHhccCcHHHHHHHHH
Q 046312 329 PNYVT--FLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 329 p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
++... -.+.+......+..+-+..+++
T Consensus 276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 276 PNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 484
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.43 E-value=1.9e+02 Score=23.26 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 384 KEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 384 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
+.|.++.+-|. ...............|+ +..|.++.+.+...+|++..+-...+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd---~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGD---YQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45555666664 23333334455667788 8888888888888888887777777777665544
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.42 E-value=2e+02 Score=25.19 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.....++..+.+.|+.++|.+.|.++...+-
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3455889999999999999999999986543
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.01 E-value=2.7e+02 Score=22.44 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 220 KMKDLGFEPDETTMLVVLSACTEL-GNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 220 ~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555666655432 334444433 45667788888888877666666666666666665543
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.93 E-value=1.6e+02 Score=21.88 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 433 PRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
+..|.....|+-.|.+.|+.+.|.+-|+.=+
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 4445566678888888888888777776543
No 488
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.86 E-value=2.7e+02 Score=27.83 Aligned_cols=89 Identities=7% Similarity=0.012 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--------CCch
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR--------GSQN 438 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~ 438 (514)
+..|-.++..|...++|+.|.++-+... +...|.+|.....++.+ +..++.++..+.+.+.. -++-
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~---m~~~EiAYaA~~~idKVsyin~iK~ltsk 646 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQ---MQISEIAYAAALQIDKVSYINHIKALTSK 646 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhcc---ccHHHHHHHHhhchhhHHHHHHHhccCcH
Confidence 3446666777778888888888877766 45556666666666666 55555555555443311 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
-..++.-..-.|+..+|..++.+
T Consensus 647 e~~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 647 EEQMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHHHhccchhhhHHHHh
Confidence 22445555556777777776654
No 489
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.82 E-value=4.4e+02 Score=24.75 Aligned_cols=143 Identities=8% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCC------------chHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHH
Q 046312 117 FIDMKRRGIKPTEFTYPFVLKACAEISG------------LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 117 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 184 (514)
|++..+. -+-|..+|..++..--..-. .+.-+.+++++++.. +.+......++..+.+..+.++..
T Consensus 8 l~~~v~~-~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRE-NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHh-CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHhhcc---CCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHHC--CCCCCH---------------HHHHHHHHHHh
Q 046312 185 KVFDDM---CERSVVSWNVIITVCVE---NLWLGEAVGYFVKMKDL--GFEPDE---------------TTMLVVLSACT 241 (514)
Q Consensus 185 ~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~--~~~p~~---------------~t~~~ll~~~~ 241 (514)
+-++++ ...+...|...+..... .-.++.+..+|.+.... +..-+. ..+..+...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q ss_pred ccCChHHHHHHHHHHHHhCC
Q 046312 242 ELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~ 261 (514)
+.|..+.|..+++.+++.++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
No 490
>PHA02940 hypothetical protein; Provisional
Probab=30.72 E-value=3.8e+02 Score=23.75 Aligned_cols=31 Identities=3% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVP 94 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~ 94 (514)
..+...+..|+ ...-.....++..+.. .|++
T Consensus 97 smF~nai~lYA--nL~ainal~~~i~~~i-k~~~ 127 (315)
T PHA02940 97 SMFDNAIELYA--NLAAINALLRLIRSFI-KPEP 127 (315)
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHhC-CCCC
Confidence 56667777887 6666666666666665 5544
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.61 E-value=2.3e+02 Score=23.66 Aligned_cols=59 Identities=12% Similarity=-0.080 Sum_probs=31.8
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 222 KDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 222 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
+..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555554332 33333333344556666666666666666655555556666666644
No 492
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.53 E-value=2.5e+02 Score=22.66 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHcCCCCCcchHHHHHHHHhcc-CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 119 DMKRRGIKPTEFTYPFVLKACAEI-SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
.+++.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556666555433 344455443 45667888888887777555555544455666666654
No 493
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=30.20 E-value=5.4e+02 Score=25.28 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRAL 405 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 405 (514)
|+..|......++.++. .++++|. +++.+..+..+..-++..++..=+..-.+.+++-.-.......+...
T Consensus 299 giqaderv~~~li~~~l--~~ldeal-------~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~ 369 (848)
T KOG2222|consen 299 GIQADERVMHHLIACHL--PDLDEAL-------EDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLI 369 (848)
T ss_pred ccchhHHHHHHHHHhcc--CchhHHH-------HhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHH
Confidence 45555555555554443 3344433 33456666666666666555544445555555554333334444433
Q ss_pred H
Q 046312 406 L 406 (514)
Q Consensus 406 ~ 406 (514)
+
T Consensus 370 i 370 (848)
T KOG2222|consen 370 I 370 (848)
T ss_pred H
Confidence 3
No 494
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.48 E-value=4.1e+02 Score=23.68 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 240 (514)
+.+|+-..+|.+.....++..|. .+++++|.+++.++-+.|..|... .+.+.+.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 34455555667777777776554 467888888888888888776543 33444443
No 495
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.34 E-value=8.3e+02 Score=27.17 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 368 IHYHTMADILARAG--HLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 368 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
.....++.+|++.+ ++++|+.+..++... +...-...+.-.+-.-+ +.++++.+..+. +.=..++-|
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-~~~~ae~alkyl~fLvD------vn~Ly~~ALG~Y----Dl~Lal~VA 881 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE-DPESAEEALKYLCFLVD------VNKLYDVALGTY----DLELALMVA 881 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-ChHHHHHHHhHheeecc------HHHHHHHHhhhc----CHHHHHHHH
Confidence 34556788888888 888888888888632 33333333444444444 666666665542 233466777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 446 YAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
-..+.+..|=+-++++++.... .. . -..-....+++++|+.-|.++
T Consensus 882 q~SQkDPKEYLPfL~~L~~l~~--~~-r-----------ry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKLPP--LY-R-----------RYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHhccChHHHHHHHHHHHhCCh--hh-e-----------eeeHhhhhCCHHHHHHHHHhh
Confidence 7777888888888888876432 11 1 112234566788887766553
No 496
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.86 E-value=6e+02 Score=25.42 Aligned_cols=289 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc----------
Q 046312 121 KRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---------- 190 (514)
Q Consensus 121 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---------- 190 (514)
+..+..-...........--..+.++...+.++.+...|.......+|.-...|.+.|....-..+=+..
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred -------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCChHHHHHHHHHHHH
Q 046312 191 -------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV-----VLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 191 -------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-----ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
...+.+.+....-.|.....+..|+++....... +.|=...+.. ....+....+.++|..++.-+.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHH
Q 046312 259 --------------------------------RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMI 303 (514)
Q Consensus 259 --------------------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 303 (514)
.--.+......--+.+|....++..+.+-.+.+.. ......-.--
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKs 247 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKS 247 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHHHHHH------hhCCCC----
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPNYVT--------FLGVLCACNHAGMVEDGYRYFHEMEH------VHGIKP---- 365 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~p---- 365 (514)
..+.-.|++.+|.+++...--..-.--..| ++.+.....+.|.+..+..+|.+..+ ..|++|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Q ss_pred ------chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 366 ------MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 366 ------~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
.........-.|...|++-.|.+.|.+.. +..++..|-.|..+|.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
No 497
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.53 E-value=1.6e+02 Score=22.44 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=21.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG 244 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 244 (514)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3334444444555556666655554445555444444444444
No 498
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.53 E-value=1.3e+02 Score=22.74 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=7.9
Q ss_pred HHHHhCCChhHHHHHHHH
Q 046312 203 TVCVENLWLGEAVGYFVK 220 (514)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~ 220 (514)
..|...|+.++|..-+++
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444555555444444
No 499
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=28.05 E-value=5.6e+02 Score=24.77 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYF 218 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~ 218 (514)
.....++..|...++|+.--+..
T Consensus 53 kv~~~i~~lc~~~~~w~~Lne~i 75 (439)
T KOG1498|consen 53 KVLEEIMKLCFSAKDWDLLNEQI 75 (439)
T ss_pred HHHHHHHHHHhccccHHHHHHHH
Confidence 34445555566666665544433
No 500
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.61 E-value=90 Score=24.09 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=18.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
++..+...+.+-.|.++++.+.+.+...+..|.-..++.+.+.
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3444444444455555555555544444444333333333333
Done!