Query 046312
Match_columns 514
No_of_seqs 536 out of 3173
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-37 6E-42 318.3 37.4 427 27-466 83-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.6E-37 1.6E-41 315.2 32.3 431 58-510 82-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-27 8.2E-32 229.5 39.3 368 74-451 11-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 7.8E-30 2.7E-34 251.5 19.3 212 111-344 7-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 7.3E-29 2.5E-33 244.6 23.2 184 196-380 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.6E-31 222.6 39.6 355 100-466 5-369 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.2E-28 209.0 32.7 396 60-467 6-480 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.3E-22 8E-27 198.3 34.1 335 94-462 26-406 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-22 7.2E-27 198.7 33.4 351 57-436 23-415 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.4E-27 203.7 30.5 399 32-442 13-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 6.3E-21 2.1E-25 192.6 33.4 390 60-467 25-493 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.9E-20 2E-24 185.4 29.9 393 32-439 32-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.1E-19 1.7E-23 168.5 33.8 322 94-448 3-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-18 9.6E-23 163.3 34.0 304 130-466 4-336 (359)
15 1b89_A Protein (clathrin heavy 99.8 2.1E-19 7.1E-24 169.2 22.6 346 74-460 15-367 (449)
16 3hym_B Cell division cycle pro 99.8 3.2E-18 1.1E-22 161.0 29.9 265 125-394 18-297 (330)
17 3hym_B Cell division cycle pro 99.8 2.1E-17 7.2E-22 155.4 32.9 279 162-446 20-314 (330)
18 2xm6_A Protein corresponding t 99.8 4.9E-17 1.7E-21 162.0 36.3 366 59-448 38-452 (490)
19 2xm6_A Protein corresponding t 99.8 4.6E-16 1.6E-20 154.9 39.3 362 82-467 27-434 (490)
20 1fch_A Peroxisomal targeting s 99.8 5.4E-18 1.9E-22 162.2 24.0 283 107-392 38-355 (368)
21 1fch_A Peroxisomal targeting s 99.8 7.2E-18 2.5E-22 161.4 23.7 279 177-462 38-356 (368)
22 2ooe_A Cleavage stimulation fa 99.8 6E-16 2E-20 155.7 38.6 396 57-466 10-493 (530)
23 2ooe_A Cleavage stimulation fa 99.8 9.4E-17 3.2E-21 161.6 30.4 404 91-511 10-495 (530)
24 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.5E-22 159.4 23.0 261 194-461 64-352 (365)
25 1b89_A Protein (clathrin heavy 99.8 2.1E-17 7.1E-22 155.7 21.8 382 29-460 7-412 (449)
26 4eqf_A PEX5-related protein; a 99.8 1.6E-17 5.5E-22 158.9 21.3 260 130-393 66-353 (365)
27 4g1t_A Interferon-induced prot 99.8 4.1E-16 1.4E-20 154.6 32.1 366 95-476 52-470 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 8.8E-16 3E-20 141.3 30.6 271 172-459 7-288 (291)
29 3cv0_A Peroxisome targeting si 99.7 5.6E-16 1.9E-20 145.4 26.1 273 95-394 22-313 (327)
30 3cv0_A Peroxisome targeting si 99.7 1.9E-16 6.4E-21 148.6 22.5 257 198-462 24-312 (327)
31 1xi4_A Clathrin heavy chain; a 99.7 1.5E-14 5.2E-19 151.6 36.8 382 58-500 983-1376(1630)
32 3mkr_A Coatomer subunit epsilo 99.7 7.1E-16 2.4E-20 141.9 22.1 248 202-467 6-266 (291)
33 1xi4_A Clathrin heavy chain; a 99.7 7.4E-14 2.5E-18 146.5 39.0 377 27-457 987-1376(1630)
34 4g1t_A Interferon-induced prot 99.7 3.7E-15 1.3E-19 147.7 26.0 367 57-443 48-471 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.2E-22 168.3 9.2 123 164-286 127-257 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-17 1.3E-21 166.1 10.2 151 262-413 124-286 (1134)
37 3uq3_A Heat shock protein STI1 99.7 3.7E-14 1.3E-18 128.0 24.3 217 233-466 8-237 (258)
38 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5.1E-19 130.6 19.6 233 196-443 6-254 (258)
39 2pl2_A Hypothetical conserved 99.6 4E-14 1.4E-18 124.3 19.8 194 262-463 2-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.6E-18 126.4 20.2 241 207-459 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.8E-13 9.6E-18 123.4 21.3 242 167-447 6-266 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 7.9E-13 2.7E-17 129.7 25.3 189 267-467 178-389 (452)
43 3e4b_A ALGK; tetratricopeptide 99.6 1E-13 3.5E-18 136.0 18.6 270 36-323 14-314 (452)
44 2pl2_A Hypothetical conserved 99.6 3.6E-13 1.2E-17 118.2 20.3 192 195-393 5-211 (217)
45 3u4t_A TPR repeat-containing p 99.6 2.4E-12 8.1E-17 117.2 26.6 232 128-394 2-248 (272)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-13 1.6E-17 122.0 21.2 240 106-354 17-269 (275)
47 1ouv_A Conserved hypothetical 99.5 5.5E-12 1.9E-16 115.0 27.5 225 194-434 5-254 (273)
48 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 7E-17 116.2 23.6 204 195-436 37-243 (252)
49 2q7f_A YRRB protein; TPR, prot 99.5 3.3E-13 1.1E-17 120.5 17.8 171 268-444 60-235 (243)
50 1ouv_A Conserved hypothetical 99.5 5.9E-12 2E-16 114.8 26.3 224 229-467 5-253 (273)
51 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.6E-17 117.4 21.7 198 265-467 37-240 (252)
52 4a1s_A PINS, partner of inscut 99.5 3.1E-13 1.1E-17 131.2 18.4 259 202-464 55-371 (411)
53 2vq2_A PILW, putative fimbrial 99.5 4.1E-12 1.4E-16 111.8 23.8 135 297-436 77-216 (225)
54 3sf4_A G-protein-signaling mod 99.5 9.7E-13 3.3E-17 127.2 21.2 269 164-435 9-340 (406)
55 2vq2_A PILW, putative fimbrial 99.5 2.8E-12 9.5E-17 112.9 22.4 198 264-466 7-212 (225)
56 2q7f_A YRRB protein; TPR, prot 99.5 5.2E-13 1.8E-17 119.2 17.7 199 263-467 21-224 (243)
57 2h6f_A Protein farnesyltransfe 99.5 1.9E-12 6.5E-17 123.2 22.3 248 195-448 97-365 (382)
58 3ro2_A PINS homolog, G-protein 99.5 1.3E-12 4.3E-17 122.6 19.4 262 200-465 10-332 (338)
59 2h6f_A Protein farnesyltransfe 99.5 1.5E-11 5E-16 117.0 25.7 226 95-357 98-344 (382)
60 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.8E-17 127.2 18.0 57 99-157 53-114 (411)
61 3sf4_A G-protein-signaling mod 99.5 2.8E-12 9.7E-17 123.9 20.2 289 97-414 12-362 (406)
62 3ro2_A PINS homolog, G-protein 99.5 3.6E-12 1.2E-16 119.5 19.8 127 267-393 185-329 (338)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.5E-11 5.2E-16 104.7 20.3 166 295-466 4-171 (184)
64 3ulq_A Response regulator aspa 99.4 1.1E-11 3.6E-16 119.1 20.1 195 267-464 145-367 (383)
65 4abn_A Tetratricopeptide repea 99.4 2.8E-12 9.6E-17 126.6 16.4 191 264-462 101-318 (474)
66 4e6h_A MRNA 3'-END-processing 99.4 1.2E-10 4.1E-15 118.3 27.0 428 48-511 55-573 (679)
67 4e6h_A MRNA 3'-END-processing 99.4 3.9E-09 1.3E-13 107.2 37.6 398 27-436 65-575 (679)
68 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 9.9E-17 118.9 12.9 242 195-464 27-306 (311)
69 3ulq_A Response regulator aspa 99.4 4.7E-11 1.6E-15 114.6 21.6 228 202-432 110-369 (383)
70 2ond_A Cleavage stimulation fa 99.4 5.2E-10 1.8E-14 103.8 26.9 219 212-437 33-276 (308)
71 2ond_A Cleavage stimulation fa 99.3 4.2E-10 1.5E-14 104.3 24.9 83 278-360 182-270 (308)
72 1hz4_A MALT regulatory protein 99.3 2.2E-09 7.7E-14 102.4 30.1 260 202-464 21-321 (373)
73 3vtx_A MAMA; tetratricopeptide 99.3 8.8E-11 3E-15 99.9 17.8 166 264-435 4-174 (184)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-11 5.8E-16 113.7 14.1 244 163-434 26-310 (311)
75 4abn_A Tetratricopeptide repea 99.3 4.5E-11 1.5E-15 117.9 17.6 212 110-358 84-319 (474)
76 3q15_A PSP28, response regulat 99.3 1.5E-10 5.2E-15 110.8 20.4 221 241-464 112-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.7E-15 97.4 18.0 161 299-465 11-173 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.3E-15 118.8 18.9 161 296-464 9-173 (723)
79 1hz4_A MALT regulatory protein 99.3 3.5E-09 1.2E-13 101.0 27.0 222 101-323 21-280 (373)
80 3q15_A PSP28, response regulat 99.2 1.3E-09 4.4E-14 104.3 22.7 224 204-431 110-365 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 9E-10 3.1E-14 93.2 19.1 167 265-437 8-179 (186)
82 4i17_A Hypothetical protein; T 99.2 1E-09 3.6E-14 96.7 19.7 204 228-446 5-224 (228)
83 4i17_A Hypothetical protein; T 99.2 9E-10 3.1E-14 97.2 17.6 189 263-466 5-210 (228)
84 1qqe_A Vesicular transport pro 99.2 5.4E-09 1.9E-13 96.0 22.0 189 203-394 45-267 (292)
85 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.4E-13 92.7 21.2 238 174-436 23-287 (310)
86 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4.2E-14 99.4 14.6 168 297-464 86-280 (283)
87 4gyw_A UDP-N-acetylglucosamine 99.1 2.6E-09 8.8E-14 109.8 17.7 161 94-258 9-173 (723)
88 3edt_B KLC 2, kinesin light ch 99.1 8.7E-10 3E-14 100.4 11.8 154 106-259 13-198 (283)
89 1qqe_A Vesicular transport pro 99.0 4.8E-09 1.6E-13 96.3 15.0 201 245-463 32-267 (292)
90 3mv2_B Coatomer subunit epsilo 99.0 4.3E-08 1.5E-12 88.6 20.4 181 214-399 85-286 (310)
91 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6E-13 80.0 14.8 127 334-465 4-132 (136)
92 3qky_A Outer membrane assembly 99.0 4.5E-08 1.6E-12 88.1 19.1 182 264-466 14-225 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.2E-08 1.1E-12 86.9 17.5 183 265-468 4-216 (225)
94 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 90.1 16.9 203 227-453 12-249 (261)
95 2fo7_A Synthetic consensus TPR 98.9 5.9E-08 2E-12 76.9 15.8 130 299-434 4-135 (136)
96 4ga2_A E3 SUMO-protein ligase 98.9 5.3E-09 1.8E-13 85.4 9.0 140 304-451 5-149 (150)
97 3qou_A Protein YBBN; thioredox 98.9 1.2E-08 4.2E-13 93.3 12.2 174 282-462 103-281 (287)
98 2r5s_A Uncharacterized protein 98.9 9.2E-09 3.1E-13 86.6 10.2 122 339-466 14-138 (176)
99 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.8E-13 105.5 12.8 191 241-437 402-608 (681)
100 3qou_A Protein YBBN; thioredox 98.9 5.6E-08 1.9E-12 88.8 15.7 160 262-429 114-282 (287)
101 2uy1_A Cleavage stimulation fa 98.9 2E-07 7E-12 91.8 20.5 374 74-510 6-415 (493)
102 2ifu_A Gamma-SNAP; membrane fu 98.8 9E-08 3.1E-12 88.5 16.6 220 208-458 4-254 (307)
103 2pzi_A Probable serine/threoni 98.8 2.1E-07 7.3E-12 95.9 20.6 167 206-379 402-580 (681)
104 2uy1_A Cleavage stimulation fa 98.8 6E-06 2E-10 81.3 29.9 350 60-430 15-412 (493)
105 3rjv_A Putative SEL1 repeat pr 98.8 4.1E-07 1.4E-11 78.9 19.2 172 284-467 5-199 (212)
106 2vsy_A XCC0866; transferase, g 98.8 2.4E-07 8.3E-12 93.7 20.3 159 278-443 2-169 (568)
107 3urz_A Uncharacterized protein 98.8 2.2E-07 7.4E-12 80.5 17.2 133 270-406 59-197 (208)
108 3urz_A Uncharacterized protein 98.8 3E-07 1E-11 79.5 18.0 137 300-445 58-199 (208)
109 2vsy_A XCC0866; transferase, g 98.8 8.5E-08 2.9E-12 97.0 15.5 151 309-466 2-158 (568)
110 2ifu_A Gamma-SNAP; membrane fu 98.8 1.9E-07 6.5E-12 86.3 16.6 151 172-323 44-222 (307)
111 3rjv_A Putative SEL1 repeat pr 98.7 3.2E-07 1.1E-11 79.6 16.0 172 81-261 5-199 (212)
112 2r5s_A Uncharacterized protein 98.7 9.8E-08 3.3E-12 80.2 11.8 156 268-463 9-171 (176)
113 2yhc_A BAMD, UPF0169 lipoprote 98.7 7.1E-07 2.4E-11 78.2 17.7 205 195-436 4-218 (225)
114 3gyz_A Chaperone protein IPGC; 98.7 1.5E-07 5E-12 76.5 12.0 102 362-466 30-134 (151)
115 3dra_A Protein farnesyltransfe 98.7 3E-05 1E-09 70.7 28.5 214 106-324 44-286 (306)
116 4ga2_A E3 SUMO-protein ligase 98.7 9.7E-08 3.3E-12 77.8 10.0 110 167-278 34-147 (150)
117 4gco_A Protein STI-1; structur 98.7 2.3E-07 8E-12 72.9 11.3 93 369-464 15-109 (126)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.7E-07 2.3E-11 77.5 15.3 97 366-465 36-150 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.1E-11 75.8 16.7 125 268-393 9-147 (213)
120 3dra_A Protein farnesyltransfe 98.6 2E-05 6.9E-10 71.8 24.7 223 30-257 38-285 (306)
121 3u3w_A Transcriptional activat 98.6 3.6E-06 1.2E-10 77.0 19.9 160 302-464 81-265 (293)
122 2vgx_A Chaperone SYCD; alterna 98.6 2.5E-07 8.5E-12 75.1 10.2 102 362-466 15-119 (148)
123 3u3w_A Transcriptional activat 98.6 1.5E-05 5E-10 72.9 23.3 158 201-358 81-264 (293)
124 1a17_A Serine/threonine protei 98.6 9E-07 3.1E-11 73.0 13.8 126 333-463 15-144 (166)
125 2qfc_A PLCR protein; TPR, HTH, 98.6 2E-06 7E-11 78.7 17.3 164 298-464 77-265 (293)
126 4gco_A Protein STI-1; structur 98.6 7.1E-07 2.4E-11 70.1 12.2 109 332-445 14-124 (126)
127 3gw4_A Uncharacterized protein 98.6 8.7E-07 3E-11 76.0 13.2 81 177-257 5-93 (203)
128 2qfc_A PLCR protein; TPR, HTH, 98.5 4.5E-06 1.5E-10 76.4 18.0 162 267-431 77-266 (293)
129 1na0_A Designed protein CTPR3; 98.5 1.6E-06 5.5E-11 67.3 13.0 113 332-449 10-124 (125)
130 2e2e_A Formate-dependent nitri 98.5 5.5E-07 1.9E-11 75.5 10.4 120 342-466 21-145 (177)
131 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.6E-11 82.3 13.1 144 295-463 146-292 (336)
132 2lni_A Stress-induced-phosphop 98.5 1.2E-06 4.1E-11 69.1 11.5 114 332-450 17-132 (133)
133 2c2l_A CHIP, carboxy terminus 98.5 4.6E-07 1.6E-11 82.4 10.1 186 266-464 5-198 (281)
134 2vyi_A SGTA protein; chaperone 98.5 1.4E-06 4.9E-11 68.3 11.8 116 332-452 13-130 (131)
135 1a17_A Serine/threonine protei 98.5 4.8E-06 1.6E-10 68.6 14.6 122 268-392 16-142 (166)
136 2xcb_A PCRH, regulatory protei 98.5 2.1E-06 7.2E-11 69.0 12.0 100 364-466 14-116 (142)
137 3gw4_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 72.4 13.7 97 297-393 67-173 (203)
138 3upv_A Heat shock protein STI1 98.4 2.2E-06 7.5E-11 67.2 11.3 97 367-466 4-102 (126)
139 4f3v_A ESX-1 secretion system 98.4 9.4E-06 3.2E-10 72.3 15.3 121 272-394 109-235 (282)
140 4f3v_A ESX-1 secretion system 98.4 5.4E-06 1.8E-10 73.9 13.5 124 337-466 108-238 (282)
141 2c2l_A CHIP, carboxy terminus 98.4 2.1E-06 7.1E-11 78.1 10.8 47 344-393 148-196 (281)
142 2kck_A TPR repeat; tetratricop 98.3 2.6E-06 8.9E-11 64.7 9.7 98 367-467 6-108 (112)
143 3q49_B STIP1 homology and U bo 98.3 5.7E-06 1.9E-10 65.7 11.8 98 365-465 7-106 (137)
144 3gyz_A Chaperone protein IPGC; 98.3 2.4E-06 8.3E-11 69.2 9.6 93 131-224 38-133 (151)
145 3sz7_A HSC70 cochaperone (SGT) 98.3 4.1E-06 1.4E-10 69.1 11.2 108 330-443 10-120 (164)
146 1hxi_A PEX5, peroxisome target 98.3 2.3E-06 8E-11 66.5 9.1 94 370-466 20-115 (121)
147 1na0_A Designed protein CTPR3; 98.3 1.9E-05 6.5E-10 61.1 14.3 93 266-359 10-105 (125)
148 3q7a_A Farnesyltransferase alp 98.3 0.00051 1.8E-08 63.3 25.6 176 99-279 59-256 (349)
149 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4E-10 61.6 12.5 96 338-438 11-108 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 5.5E-06 1.9E-10 70.8 11.6 169 274-466 13-187 (198)
151 1elw_A TPR1-domain of HOP; HOP 98.3 8.6E-06 2.9E-10 62.4 11.7 98 366-466 3-102 (118)
152 2e2e_A Formate-dependent nitri 98.3 1.1E-05 3.7E-10 67.4 12.8 124 308-437 22-150 (177)
153 2vgx_A Chaperone SYCD; alterna 98.3 3.5E-06 1.2E-10 68.2 9.4 101 332-438 22-125 (148)
154 2lni_A Stress-induced-phosphop 98.3 8.2E-06 2.8E-10 64.2 11.0 100 364-466 13-114 (133)
155 2dba_A Smooth muscle cell asso 98.2 2.2E-05 7.6E-10 63.0 13.6 108 332-445 29-142 (148)
156 2vyi_A SGTA protein; chaperone 98.2 3E-05 1E-09 60.5 13.8 113 298-413 14-128 (131)
157 3q7a_A Farnesyltransferase alp 98.2 0.00088 3E-08 61.7 25.2 172 205-382 64-257 (349)
158 4gcn_A Protein STI-1; structur 98.2 7E-06 2.4E-10 64.4 9.7 93 369-464 10-111 (127)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 1.9E-05 6.4E-10 65.1 12.7 96 295-394 10-106 (164)
160 3upv_A Heat shock protein STI1 98.2 1.5E-05 5.1E-10 62.3 11.3 92 298-393 6-98 (126)
161 4b4t_Q 26S proteasome regulato 98.2 4.2E-05 1.4E-09 74.1 16.9 153 171-323 11-202 (434)
162 2xcb_A PCRH, regulatory protei 98.2 1.1E-05 3.8E-10 64.7 10.5 99 334-438 21-122 (142)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.9E-05 6.6E-10 77.1 14.2 159 280-463 249-413 (457)
164 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.2E-09 71.9 15.1 134 195-350 147-283 (336)
165 2dba_A Smooth muscle cell asso 98.2 1.6E-05 5.6E-10 63.8 11.3 98 366-466 27-129 (148)
166 2fbn_A 70 kDa peptidylprolyl i 98.2 6.1E-06 2.1E-10 70.5 9.1 161 170-351 10-176 (198)
167 4gcn_A Protein STI-1; structur 98.1 3.4E-05 1.2E-09 60.4 12.1 94 299-393 11-109 (127)
168 3q49_B STIP1 homology and U bo 98.1 2.6E-05 9E-10 61.7 11.0 99 331-434 9-109 (137)
169 2kck_A TPR repeat; tetratricop 98.1 5.5E-05 1.9E-09 57.1 12.0 63 196-259 41-106 (112)
170 4b4t_Q 26S proteasome regulato 98.1 0.00028 9.7E-09 68.2 19.4 193 202-394 11-243 (434)
171 1elr_A TPR2A-domain of HOP; HO 98.0 5.2E-05 1.8E-09 59.1 11.5 94 299-393 7-105 (131)
172 2xev_A YBGF; tetratricopeptide 98.0 2.1E-05 7.2E-10 61.6 9.0 61 401-464 41-104 (129)
173 1elr_A TPR2A-domain of HOP; HO 98.0 2.2E-05 7.4E-10 61.4 9.0 96 368-466 5-109 (131)
174 3dss_A Geranylgeranyl transfer 98.0 0.0013 4.3E-08 60.4 21.7 189 246-443 90-316 (331)
175 2hr2_A Hypothetical protein; a 98.0 2.8E-05 9.6E-10 62.5 9.1 93 370-465 14-131 (159)
176 1wao_1 Serine/threonine protei 98.0 1.3E-05 4.5E-10 78.7 8.6 117 339-461 14-135 (477)
177 3ro3_A PINS homolog, G-protein 98.0 4E-05 1.4E-09 62.3 10.4 61 299-359 92-157 (164)
178 2xev_A YBGF; tetratricopeptide 98.0 0.0001 3.5E-09 57.5 12.0 86 303-393 9-102 (129)
179 3ro3_A PINS homolog, G-protein 98.0 3.3E-05 1.1E-09 62.9 9.3 93 369-464 51-157 (164)
180 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 7.4E-10 73.4 9.1 148 296-466 179-329 (338)
181 1ihg_A Cyclophilin 40; ppiase 97.9 6.5E-05 2.2E-09 71.0 12.1 138 296-458 223-363 (370)
182 3dss_A Geranylgeranyl transfer 97.9 0.0023 7.7E-08 58.7 21.8 182 281-466 90-305 (331)
183 1hxi_A PEX5, peroxisome target 97.9 8.3E-05 2.8E-09 57.6 9.9 88 302-393 23-111 (121)
184 3rkv_A Putative peptidylprolyl 97.9 5.2E-05 1.8E-09 62.2 9.0 62 400-464 64-125 (162)
185 3k9i_A BH0479 protein; putativ 97.9 9.7E-06 3.3E-10 62.5 4.1 89 344-436 3-95 (117)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 2.3E-05 7.8E-10 73.2 7.3 151 331-510 179-330 (338)
187 3rkv_A Putative peptidylprolyl 97.8 9.6E-05 3.3E-09 60.6 9.7 67 367-436 63-131 (162)
188 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 1.9E-05 6.5E-10 77.1 6.2 130 367-508 268-415 (457)
189 1wao_1 Serine/threonine protei 97.8 0.00029 1E-08 69.0 14.5 115 273-391 14-134 (477)
190 2l6j_A TPR repeat-containing p 97.7 1.1E-05 3.9E-10 61.1 2.4 92 366-460 3-102 (111)
191 3k9i_A BH0479 protein; putativ 97.7 5.4E-05 1.8E-09 58.2 6.2 83 309-394 3-88 (117)
192 1dce_A Protein (RAB geranylger 97.6 0.0044 1.5E-07 61.9 20.3 172 280-454 44-244 (567)
193 1ihg_A Cyclophilin 40; ppiase 97.6 0.00052 1.8E-08 64.7 12.9 138 231-388 224-362 (370)
194 1na3_A Designed protein CTPR2; 97.6 0.00031 1.1E-08 50.7 8.9 81 367-450 9-91 (91)
195 3n71_A Histone lysine methyltr 97.6 0.00014 4.7E-09 71.0 8.8 123 341-466 319-465 (490)
196 3ma5_A Tetratricopeptide repea 97.6 0.00038 1.3E-08 51.6 8.9 65 398-465 6-70 (100)
197 2hr2_A Hypothetical protein; a 97.6 0.00034 1.2E-08 56.2 8.7 69 369-440 59-140 (159)
198 2l6j_A TPR repeat-containing p 97.5 0.00014 4.8E-09 54.9 5.8 94 296-393 4-104 (111)
199 3bee_A Putative YFRE protein; 97.5 0.00093 3.2E-08 48.6 9.9 73 396-468 3-75 (93)
200 3n71_A Histone lysine methyltr 97.5 0.00085 2.9E-08 65.5 12.3 120 240-359 319-463 (490)
201 1klx_A Cysteine rich protein B 97.5 0.0023 7.9E-08 50.6 12.9 109 210-326 10-127 (138)
202 1wy6_A Hypothetical protein ST 97.5 0.015 5.3E-07 44.1 16.0 147 300-468 9-157 (172)
203 2kat_A Uncharacterized protein 97.4 0.00057 2E-08 52.0 8.3 64 398-464 18-81 (115)
204 1zu2_A Mitochondrial import re 97.4 0.00013 4.5E-09 58.5 4.5 50 418-467 62-122 (158)
205 3lvg_A Clathrin heavy chain 1; 97.4 5.3E-06 1.8E-10 77.7 -4.5 399 59-508 53-509 (624)
206 1klx_A Cysteine rich protein B 97.4 0.0021 7.1E-08 50.9 11.2 109 109-225 10-127 (138)
207 2kat_A Uncharacterized protein 97.2 0.0015 5.3E-08 49.5 8.1 63 296-359 19-81 (115)
208 3ma5_A Tetratricopeptide repea 97.1 0.0028 9.6E-08 46.7 8.7 63 296-359 7-69 (100)
209 1dce_A Protein (RAB geranylger 97.1 0.023 7.8E-07 56.7 17.6 168 110-282 45-243 (567)
210 1na3_A Designed protein CTPR2; 97.0 0.0078 2.7E-07 42.9 10.6 64 196-260 10-73 (91)
211 3mkq_A Coatomer beta'-subunit; 97.0 0.025 8.7E-07 59.4 18.0 153 102-289 607-760 (814)
212 1zu2_A Mitochondrial import re 96.8 0.002 6.7E-08 51.6 5.9 86 345-436 16-125 (158)
213 1qsa_A Protein (soluble lytic 96.8 0.38 1.3E-05 48.1 23.5 118 305-430 224-347 (618)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0012 4.2E-08 48.4 4.2 64 373-439 6-72 (99)
215 3mkq_A Coatomer beta'-subunit; 96.7 0.034 1.2E-06 58.4 16.4 102 172-293 607-709 (814)
216 3ly7_A Transcriptional activat 96.6 0.084 2.9E-06 48.6 15.7 66 366-434 276-342 (372)
217 2kc7_A BFR218_protein; tetratr 96.4 0.015 5.1E-07 42.4 8.3 55 337-394 6-62 (99)
218 3u64_A Protein TP_0956; tetrat 96.3 0.011 3.7E-07 52.2 7.9 108 384-508 180-298 (301)
219 3ly7_A Transcriptional activat 96.3 0.065 2.2E-06 49.4 13.2 69 395-467 273-341 (372)
220 3qww_A SET and MYND domain-con 96.2 0.012 4.2E-07 56.3 8.4 63 297-359 341-410 (433)
221 3qww_A SET and MYND domain-con 96.1 0.0048 1.6E-07 59.2 5.0 82 380-464 311-410 (433)
222 3qwp_A SET and MYND domain-con 95.9 0.027 9.1E-07 54.0 9.3 85 275-359 297-399 (429)
223 1pc2_A Mitochondria fission pr 95.9 0.038 1.3E-06 43.7 8.4 88 345-437 12-106 (152)
224 3qwp_A SET and MYND domain-con 95.9 0.019 6.5E-07 55.0 8.0 116 374-510 294-427 (429)
225 3mkq_B Coatomer subunit alpha; 95.6 0.7 2.4E-05 37.5 15.5 129 172-322 13-141 (177)
226 1wy6_A Hypothetical protein ST 95.2 0.75 2.6E-05 35.1 13.5 140 206-364 18-157 (172)
227 3mkq_B Coatomer subunit alpha; 95.1 1.1 3.6E-05 36.4 17.3 102 275-394 15-116 (177)
228 1pc2_A Mitochondria fission pr 95.1 0.27 9.1E-06 38.8 10.7 84 312-398 14-103 (152)
229 3lvg_A Clathrin heavy chain 1; 94.5 0.00058 2E-08 64.3 -6.9 240 93-355 53-315 (624)
230 2v5f_A Prolyl 4-hydroxylase su 94.4 0.21 7.1E-06 36.7 8.2 65 371-438 9-82 (104)
231 1nzn_A CGI-135 protein, fissio 94.3 0.17 5.9E-06 38.4 7.5 89 344-437 14-109 (126)
232 2wpv_A GET4, UPF0363 protein Y 94.3 2.9 9.8E-05 37.6 22.0 169 166-360 35-217 (312)
233 4h7y_A Dual specificity protei 94.2 0.5 1.7E-05 36.9 9.9 96 91-188 10-118 (161)
234 2v5f_A Prolyl 4-hydroxylase su 94.1 0.23 7.9E-06 36.5 7.9 62 298-359 7-74 (104)
235 3bee_A Putative YFRE protein; 94.0 0.5 1.7E-05 33.8 9.2 66 366-434 5-75 (93)
236 3u64_A Protein TP_0956; tetrat 93.8 0.15 5E-06 45.1 7.0 106 347-464 179-297 (301)
237 1y8m_A FIS1; mitochondria, unk 93.7 1.4 4.9E-05 34.0 11.6 70 364-436 36-111 (144)
238 4ady_A RPN2, 26S proteasome re 93.1 3.7 0.00013 42.9 17.0 18 174-191 384-401 (963)
239 3lpz_A GET4 (YOR164C homolog); 93.1 4.9 0.00017 36.4 21.8 168 166-359 37-215 (336)
240 4b4t_P 26S proteasome regulato 92.9 4.3 0.00015 38.8 16.5 236 56-293 52-323 (445)
241 3o48_A Mitochondria fission 1 92.8 0.5 1.7E-05 36.0 7.7 28 405-435 84-111 (134)
242 4gns_B Protein CSD3, chitin bi 92.7 0.49 1.7E-05 48.3 9.8 53 408-463 346-398 (754)
243 1nzn_A CGI-135 protein, fissio 92.2 1.2 4.1E-05 33.8 9.1 91 305-398 10-106 (126)
244 2uwj_G Type III export protein 92.1 1.9 6.4E-05 30.7 9.1 88 143-235 20-107 (115)
245 2p58_C Putative type III secre 91.9 2 6.7E-05 30.7 9.1 87 143-234 21-107 (116)
246 3ffl_A Anaphase-promoting comp 91.6 2 6.8E-05 34.2 10.1 112 269-394 24-149 (167)
247 2wpv_A GET4, UPF0363 protein Y 91.3 6.1 0.00021 35.4 14.3 169 61-258 34-216 (312)
248 4fhn_B Nucleoporin NUP120; pro 90.2 8.5 0.00029 41.9 17.2 162 169-348 817-988 (1139)
249 1v54_E Cytochrome C oxidase po 90.2 1.8 6.2E-05 31.0 7.7 64 311-376 25-88 (109)
250 4h7y_A Dual specificity protei 89.7 1.2 4.1E-05 34.8 7.0 103 329-436 11-128 (161)
251 4fhn_B Nucleoporin NUP120; pro 89.3 8.2 0.00028 42.0 16.2 120 264-386 841-990 (1139)
252 4b4t_P 26S proteasome regulato 88.6 17 0.00059 34.6 18.9 181 178-360 30-247 (445)
253 4gns_B Protein CSD3, chitin bi 87.5 6.5 0.00022 40.2 12.8 53 339-394 345-398 (754)
254 2y69_E Cytochrome C oxidase su 86.5 3.7 0.00013 31.2 7.7 63 312-376 69-131 (152)
255 2ff4_A Probable regulatory pro 86.0 2.2 7.4E-05 40.1 8.1 67 404-473 176-247 (388)
256 2ff4_A Probable regulatory pro 85.9 6.2 0.00021 36.9 11.2 67 200-267 176-247 (388)
257 2uwj_G Type III export protein 85.2 8.3 0.00028 27.5 9.5 86 245-335 21-106 (115)
258 1v54_E Cytochrome C oxidase po 85.2 5.1 0.00017 28.7 7.5 60 213-273 28-87 (109)
259 2p58_C Putative type III secre 84.7 8.8 0.0003 27.4 10.2 86 245-335 22-107 (116)
260 1zbp_A Hypothetical protein VP 83.5 22 0.00074 30.9 12.6 54 305-359 6-59 (273)
261 4ady_A RPN2, 26S proteasome re 80.7 60 0.002 34.1 27.9 25 63-89 233-257 (963)
262 3lpz_A GET4 (YOR164C homolog); 80.5 33 0.0011 31.0 21.7 167 267-464 37-215 (336)
263 3ffl_A Anaphase-promoting comp 79.9 21 0.00072 28.4 10.9 58 166-223 22-91 (167)
264 3o48_A Mitochondria fission 1 77.1 21 0.00073 27.1 9.0 71 327-398 36-110 (134)
265 4b4t_R RPN7, 26S proteasome re 75.3 25 0.00086 33.3 11.5 94 267-360 133-237 (429)
266 4a1g_A Mitotic checkpoint seri 75.1 25 0.00087 27.5 9.3 80 384-469 52-134 (152)
267 2y69_E Cytochrome C oxidase su 75.0 15 0.00052 28.0 7.5 60 213-273 71-130 (152)
268 3ltm_A Alpha-REP4; protein eng 74.7 34 0.0012 28.1 19.5 17 294-310 155-171 (211)
269 1qsa_A Protein (soluble lytic 74.5 73 0.0025 31.8 32.6 380 46-456 57-470 (618)
270 3txn_A 26S proteasome regulato 74.3 56 0.0019 30.4 29.1 217 235-467 104-345 (394)
271 2wvi_A Mitotic checkpoint seri 74.0 26 0.00089 27.8 9.2 80 384-469 47-129 (164)
272 4b4t_R RPN7, 26S proteasome re 73.7 16 0.00055 34.6 9.6 28 131-158 133-160 (429)
273 3esl_A Checkpoint serine/threo 73.2 20 0.00069 29.6 8.6 67 96-163 82-149 (202)
274 3esl_A Checkpoint serine/threo 72.0 36 0.0012 28.1 9.8 50 419-468 96-147 (202)
275 1wdy_A 2-5A-dependent ribonucl 71.9 23 0.00079 30.7 9.9 48 242-289 191-240 (285)
276 1wdy_A 2-5A-dependent ribonucl 71.0 32 0.0011 29.7 10.7 15 74-88 14-28 (285)
277 1zbp_A Hypothetical protein VP 69.0 58 0.002 28.3 12.7 112 339-465 5-129 (273)
278 3ltm_A Alpha-REP4; protein eng 68.7 48 0.0016 27.2 19.9 123 228-359 62-184 (211)
279 3ltj_A Alpharep-4; protein eng 65.9 52 0.0018 26.7 19.2 80 263-346 88-167 (201)
280 4aez_C MAD3, mitotic spindle c 63.4 34 0.0012 28.8 8.2 68 395-468 113-182 (223)
281 3txn_A 26S proteasome regulato 63.1 97 0.0033 28.8 21.1 154 269-428 103-281 (394)
282 1y8m_A FIS1; mitochondria, unk 63.0 50 0.0017 25.5 10.9 70 328-398 36-109 (144)
283 2wvi_A Mitotic checkpoint seri 62.5 27 0.00094 27.7 7.1 54 111-164 77-131 (164)
284 1k1a_A B-cell lymphoma 3-encod 61.9 56 0.0019 27.2 10.1 84 103-190 15-102 (241)
285 3ltj_A Alpharep-4; protein eng 61.6 63 0.0022 26.2 20.2 127 189-324 53-179 (201)
286 2qx5_A Nucleoporin NIC96; mRNA 59.8 1.5E+02 0.005 29.8 13.9 22 377-398 548-569 (661)
287 4a1g_A Mitotic checkpoint seri 57.5 67 0.0023 25.1 8.5 53 111-163 82-135 (152)
288 3eiq_C Programmed cell death p 56.6 1.1E+02 0.0036 28.0 11.0 67 298-366 219-287 (358)
289 4g8k_A 2-5A-dependent ribonucl 54.7 65 0.0022 28.8 9.7 83 272-367 243-329 (337)
290 1k1a_A B-cell lymphoma 3-encod 54.5 63 0.0021 26.9 9.1 83 136-219 13-100 (241)
291 3hra_A Ankyrin repeat family p 52.8 54 0.0019 26.4 8.1 15 74-88 14-28 (201)
292 3eu9_A Huntingtin-interacting 52.8 45 0.0015 27.8 7.8 13 75-87 19-31 (240)
293 3jxi_A Vanilloid receptor-rela 52.2 36 0.0012 29.1 7.2 87 103-190 11-116 (260)
294 2d2s_A Exocyst complex compone 52.1 43 0.0015 28.5 7.2 24 99-122 23-46 (235)
295 2d2s_A Exocyst complex compone 51.4 63 0.0021 27.5 8.1 26 265-290 91-116 (235)
296 3hra_A Ankyrin repeat family p 49.7 52 0.0018 26.5 7.5 151 104-264 12-172 (201)
297 3kea_A K1L; tropism, ANK repea 49.0 42 0.0014 29.4 7.1 14 241-254 169-182 (285)
298 2ion_A PDCD4, programmed cell 48.5 95 0.0032 24.2 8.5 63 268-330 12-79 (152)
299 1n11_A Ankyrin; clathrin, BAND 47.7 69 0.0024 30.0 8.9 289 74-393 23-334 (437)
300 2nsz_A Programmed cell death p 44.0 1E+02 0.0034 23.2 9.6 63 268-330 10-77 (129)
301 1wgl_A TOLL-interacting protei 40.3 69 0.0023 20.3 5.1 50 420-471 8-58 (59)
302 4gq2_M Nucleoporin NUP120; bet 40.3 2.6E+02 0.009 29.6 12.5 128 169-310 815-950 (950)
303 4b4t_S RPN3, 26S proteasome re 40.3 2.6E+02 0.009 27.0 12.7 61 265-325 231-299 (523)
304 4aez_C MAD3, mitotic spindle c 39.3 1.5E+02 0.0052 24.8 8.3 53 313-366 131-184 (223)
305 2zu6_B Programmed cell death p 38.6 71 0.0024 28.5 6.7 57 63-122 6-66 (307)
306 3mv2_A Coatomer subunit alpha; 37.5 2.2E+02 0.0077 25.4 12.6 68 382-466 185-257 (325)
307 3eu9_A Huntingtin-interacting 37.4 57 0.002 27.1 6.0 106 46-163 23-136 (240)
308 2fe3_A Peroxide operon regulat 37.2 73 0.0025 24.5 5.9 60 120-180 13-72 (145)
309 2ion_A PDCD4, programmed cell 37.1 1.5E+02 0.005 23.1 8.0 62 168-229 13-79 (152)
310 3ygs_P Procaspase 9; apoptosis 36.6 35 0.0012 24.2 3.6 65 46-115 25-89 (97)
311 2rfa_A Transient receptor pote 36.3 1.8E+02 0.0061 23.9 9.1 44 74-118 12-58 (232)
312 2fu4_A Ferric uptake regulatio 35.1 1E+02 0.0034 20.7 6.0 60 119-179 7-67 (83)
313 2r9g_A AAA ATPase, central reg 34.4 1.9E+02 0.0066 23.7 9.3 63 198-261 14-84 (204)
314 2zu6_B Programmed cell death p 33.9 2.5E+02 0.0086 24.9 12.6 67 298-366 168-236 (307)
315 1ug3_A EIF4GI, eukaryotic prot 33.9 2.2E+02 0.0074 25.7 9.4 26 168-193 15-40 (339)
316 2p1h_A APAF-1, apoptotic prote 33.4 1.2E+02 0.0041 21.1 6.6 63 148-214 24-86 (94)
317 3ygs_P Procaspase 9; apoptosis 33.3 52 0.0018 23.3 4.1 38 178-215 51-88 (97)
318 3aji_A 26S proteasome non-ATPa 32.7 2E+02 0.0069 23.4 9.5 106 74-189 15-128 (231)
319 3bge_A Predicted ATPase; struc 32.0 2.1E+02 0.0072 23.4 8.4 46 199-244 8-56 (201)
320 3ljn_A Hypothetical protein; a 31.9 87 0.003 28.4 6.6 14 207-220 93-106 (364)
321 3aji_A 26S proteasome non-ATPa 31.9 2.1E+02 0.0072 23.4 8.7 84 101-189 10-95 (231)
322 3kea_A K1L; tropism, ANK repea 31.3 1E+02 0.0036 26.7 6.8 14 379-392 138-151 (285)
323 3eiq_C Programmed cell death p 31.1 3.1E+02 0.01 25.0 16.6 68 267-334 219-291 (358)
324 2fu4_A Ferric uptake regulatio 30.9 1.2E+02 0.0041 20.2 7.1 61 219-280 6-67 (83)
325 2w57_A Ferric uptake regulatio 30.9 1.8E+02 0.0061 22.4 7.3 62 219-281 6-68 (150)
326 2ko4_A Mediator of RNA polymer 30.6 1.1E+02 0.0039 20.5 4.9 39 82-120 23-62 (81)
327 1mzb_A Ferric uptake regulatio 30.4 1.7E+02 0.006 22.0 7.1 61 220-281 8-69 (136)
328 1oyz_A Hypothetical protein YI 29.8 2.6E+02 0.009 23.8 21.1 19 293-311 203-221 (280)
329 4ets_A Ferric uptake regulatio 29.7 96 0.0033 24.4 5.6 70 111-181 14-86 (162)
330 3twr_A Tankyrase-2; ankyrin re 29.7 1.9E+02 0.0064 22.1 8.4 14 74-87 17-30 (165)
331 2w57_A Ferric uptake regulatio 29.5 1.4E+02 0.0048 23.1 6.4 63 118-181 6-69 (150)
332 3qye_A TBC1 domain family memb 29.4 3.1E+02 0.01 24.5 9.9 106 115-220 209-319 (331)
333 2nsz_A Programmed cell death p 29.1 1.8E+02 0.0062 21.8 9.3 62 168-229 11-77 (129)
334 2xig_A Ferric uptake regulatio 28.3 1.2E+02 0.004 23.5 5.8 63 118-181 16-78 (150)
335 3ctd_A Putative ATPase, AAA fa 28.2 2.5E+02 0.0087 23.2 8.6 68 194-261 31-106 (213)
336 3twe_A Alpha4H; unknown functi 27.8 52 0.0018 16.0 2.1 18 494-511 2-19 (27)
337 2fe3_A Peroxide operon regulat 26.8 1.5E+02 0.0053 22.6 6.2 61 220-281 12-72 (145)
338 4g8k_A 2-5A-dependent ribonucl 26.5 3.3E+02 0.011 23.9 10.0 41 149-189 219-261 (337)
339 2o03_A Probable zinc uptake re 26.2 97 0.0033 23.3 4.8 44 100-143 16-59 (131)
340 4gq2_M Nucleoporin NUP120; bet 25.9 4.6E+02 0.016 27.7 11.5 107 271-381 816-950 (950)
341 3bu8_A Telomeric repeat-bindin 25.8 2.6E+02 0.0088 23.3 7.2 19 340-358 123-141 (235)
342 3jxi_A Vanilloid receptor-rela 25.5 69 0.0024 27.2 4.4 54 204-257 11-73 (260)
343 3bqo_A Telomeric repeat-bindin 25.4 2.8E+02 0.0095 22.7 11.1 90 31-120 26-143 (211)
344 2xig_A Ferric uptake regulatio 25.4 2.2E+02 0.0075 21.9 6.9 61 220-281 17-77 (150)
345 1ug3_A EIF4GI, eukaryotic prot 25.3 3.1E+02 0.011 24.7 8.9 28 268-295 14-41 (339)
346 3b7b_A Euchromatic histone-lys 25.3 1.4E+02 0.0046 24.7 6.3 21 339-359 215-235 (237)
347 3mwm_A ZUR, putative metal upt 24.2 89 0.003 23.8 4.3 41 138-178 22-62 (139)
348 1mzb_A Ferric uptake regulatio 23.9 1.7E+02 0.0059 22.0 5.9 60 120-180 9-69 (136)
349 2pnn_A Transient receptor pote 23.8 1.5E+02 0.0053 25.2 6.5 94 95-190 12-124 (273)
350 2rfa_A Transient receptor pote 23.7 2.6E+02 0.0088 22.8 7.7 149 101-263 7-184 (232)
351 3eyy_A Putative iron uptake re 23.6 1.2E+02 0.0042 23.2 5.1 59 120-180 10-68 (145)
352 2jul_A Calsenilin; EF-hand, ca 23.2 3.4E+02 0.012 22.9 9.2 39 181-219 213-253 (256)
353 3b7b_A Euchromatic histone-lys 23.1 1.4E+02 0.0049 24.6 6.0 131 47-190 26-167 (237)
354 1wty_A Hypothetical protein TT 22.3 1.9E+02 0.0063 21.3 5.6 70 311-386 3-72 (119)
355 3qil_A Clathrin heavy chain 1; 22.3 20 0.00068 26.6 0.2 51 133-186 36-86 (125)
356 1y1x_A Leishmania major homolo 22.0 1.6E+02 0.0056 23.4 5.9 41 77-120 61-102 (191)
357 2p1h_A APAF-1, apoptotic prote 21.7 2E+02 0.007 19.8 7.3 60 250-313 25-84 (94)
358 1oyz_A Hypothetical protein YI 21.6 3.7E+02 0.013 22.8 24.1 81 263-346 140-221 (280)
359 1n11_A Ankyrin; clathrin, BAND 21.6 1.8E+02 0.0063 26.9 7.0 330 101-469 18-370 (437)
360 4ets_A Ferric uptake regulatio 21.3 1.9E+02 0.0064 22.7 5.8 60 221-281 24-85 (162)
361 2qx5_A Nucleoporin NIC96; mRNA 21.1 6.3E+02 0.022 25.3 20.9 88 375-463 451-565 (661)
362 2qq8_A TBC1 domain family memb 21.0 3.2E+02 0.011 24.5 8.0 75 317-394 214-293 (334)
363 2b7e_A PRE-mRNA processing pro 20.9 1.3E+02 0.0044 19.0 3.6 29 111-139 3-31 (59)
364 3f3f_C Nucleoporin NUP85; stru 20.8 5.9E+02 0.02 24.8 22.7 77 41-118 175-266 (570)
365 3l6a_A Eukaryotic translation 20.8 4.2E+02 0.015 24.1 8.8 84 265-348 12-100 (364)
366 2o03_A Probable zinc uptake re 20.7 1.7E+02 0.0058 21.9 5.3 43 202-244 17-59 (131)
367 2bn5_A PSI; nuclear protein, s 20.3 1.2E+02 0.004 16.4 3.7 26 439-464 5-30 (33)
368 1bpo_A Protein (clathrin); cla 20.1 5.7E+02 0.019 24.3 12.2 86 101-188 368-453 (494)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-37 Score=318.33 Aligned_cols=427 Identities=9% Similarity=-0.016 Sum_probs=372.6
Q ss_pred hhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHH
Q 046312 27 KARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIR 102 (514)
Q Consensus 27 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~ 102 (514)
+...+..+.+.+ ++...+..+++.+.. ..|+..++..++..|. +.|++++|..+|+++.. .+++.+|+.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYC--CTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH--HTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHH--HcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 444455555544 678888999998885 4578889999999999 99999999999999832 678899999999
Q ss_pred HHHhCCCchHHHHHHHHHHHc---------------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchH
Q 046312 103 GYAWSDRPREAVWVFIDMKRR---------------GIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTN 167 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 167 (514)
+|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999953221 223356789999999999999999999999999875 2233333
Q ss_pred HHH--------------------------------------HHHHHcCCCHHHHHHHhhccCC--CChhhHHHHHHHHHh
Q 046312 168 NNL--------------------------------------VRFYGSCRRKRDACKVFDDMCE--RSVVSWNVIITVCVE 207 (514)
Q Consensus 168 ~~l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 207 (514)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 332 4556678999999999999976 789999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999875 4477889999999999999999999999999765 45788999999999999999999999
Q ss_pred HHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 288 FSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 288 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 999864 468899999999999999999999999999864 457889999999999999999999999999975 24
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMP-------FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|+ +++|.+.++.+.+.+|++
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTND 549 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCC
Confidence 468899999999999999999999999983 3677 7899999999999999 999999999999999999
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+.+|..++.+|.+.|++++|.++++++.+..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-37 Score=315.23 Aligned_cols=431 Identities=10% Similarity=0.038 Sum_probs=363.6
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 136 (514)
++...|+.++..|. +.|++++|..+|+++.. .|+..+|..++.+|.+.|++++|+.+|+++.. .+++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDAL--MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 57788999999999 99999999999998743 56778888899999999999999999998865 367888999999
Q ss_pred HHHhccCCchHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C-ChhhH
Q 046312 137 KACAEISGLNEGMQVQANVTKS---------------GLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R-SVVSW 198 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~ 198 (514)
.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+ | +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1223477899999999999999999999999832 2 22333
Q ss_pred HH--------------------------------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 199 NV--------------------------------------IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240 (514)
Q Consensus 199 ~~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 240 (514)
.. ++..|.+.|++++|.++|+++.+. +++..++..++.++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 244566778899999999988765 58899999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.+.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999988743 788899999999999999999999998864 468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 046312 318 LFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--F 395 (514)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 395 (514)
+|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++. .
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998742 345778999999999999999999999999863 34578899999999999999999999999986 4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc------CCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL------EPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
+.+..+|..++..+...|+ +++|.+.++.+.+. +|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 546 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-- 546 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred CCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 4578999999999999999 99999999999887 4443 4578899999999999999999999998765
Q ss_pred CCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 469 KMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
|.....| ..+...|...|++++|.+.++++.+.-+
T Consensus 547 p~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 547 TNDANVH-------TAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp SCCHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCChHHH-------HHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 3344455 5677889999999999999999887544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.4e-27 Score=229.46 Aligned_cols=368 Identities=10% Similarity=-0.019 Sum_probs=302.9
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|++++|...+..+.. +.++..+..+...+.+.|++++|...++...+. .+.+..+|..+..++.+.|++++|...
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 67889999888877632 334456667777788889999999988887775 245667888888899999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99888774 3345678888888999999999998888872 2345567778888888899999999999988763 34
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILG 305 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 305 (514)
+..++..+...+...|++++|...++++.+.+. .+...+..+...+...|++++|...|++..+ .+..++..+...
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 567888888889999999999999999988763 3567888888999999999999999987764 357888899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+...+.+.|++++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998853 234677888999999999999999999999874 24567888999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 386 AYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 386 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
|.+.++++. ..| +..++..+...+...|+ +++|.+.++.+.++.|+.+.+|..++.++.+.|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999886 434 57889999999999999 9999999999999999999899999988887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.8e-30 Score=251.53 Aligned_cols=212 Identities=12% Similarity=0.060 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhc
Q 046312 111 REAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 189 (514)
..+..+.++++++++.+.+. .++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777766554 58888999999999999999999999999999999999999999888764332
Q ss_pred cCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 190 MCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 190 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+.+..++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345568888999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
++|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888864 788888888888888888888888888888888888888888888887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.3e-29 Score=244.63 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCchh
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN---------LSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 266 (514)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46788999999999999999999999999999999999999999987664 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 380 (514)
+.|++++|.+++++|.+. |..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999997 9999999999999998753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-26 Score=222.64 Aligned_cols=355 Identities=13% Similarity=0.057 Sum_probs=310.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTE-FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
+...+.+.|++++|++.++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677899999999999998875 3444 466677778889999999999999998875 567789999999999999
Q ss_pred CHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 046312 179 RKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQ 255 (514)
Q Consensus 179 ~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 255 (514)
++++|...|+++ .+.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999988 33456789999999999999999999999999864 23445667788888999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 256 LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 256 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 998753 3678899999999999999999999999875 356788999999999999999999999998753 23477
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
++..+..++...|++++|...++++.+. .| +..+|..+...+.+.|++++|.+.|+++. .+.+..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8889999999999999999999999874 44 46789999999999999999999999986 556789999999999
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...|+ +++|...++.+.+..|++..++..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999 9999999999999999999999999999999999999999999998743
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=209.02 Aligned_cols=396 Identities=11% Similarity=-0.061 Sum_probs=317.5
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (514)
...+......+. +.|++++|...|+++.. .|++..|..+..++.+.|++++|++.|+++.+.+ +.+...|..+..+
T Consensus 6 a~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFF--RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 345566667777 89999999999998853 5778889999999999999999999999998863 3455688899999
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHh-------------------------------
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVF------------------------------- 187 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~------------------------------- 187 (514)
+...|++++|...|+++.+.+ +++......++..+........+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 344444444444443322222222111
Q ss_pred -------hccC----------CCChhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 046312 188 -------DDMC----------ERSVVSWNVIITVCVE---NLWLGEAVGYFVKMKD-----LGF--------EPDETTML 234 (514)
Q Consensus 188 -------~~~~----------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~t~~ 234 (514)
.... +.+...+......+.. .|++++|...|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1110 1123444445555554 8999999999999988 311 22346777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGY 311 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 311 (514)
.+...+...|++++|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999998755 88899999999999999999999998875 467789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
+++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999864 3356778888999999999999999999998752 3346788889999999999999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 392 NMP----FQPN----PIVLRALLSASSI---HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 392 ~~~----~~p~----~~~~~~l~~~~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
++. ..++ ...+..+...+.. .|+ ++.|...++.+.+..|+++.++..++.+|.+.|++++|...++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 874 2222 4488889999999 999 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 046312 461 FMKNVGL 467 (514)
Q Consensus 461 ~m~~~~~ 467 (514)
+..+.+.
T Consensus 474 ~a~~~~~ 480 (514)
T 2gw1_A 474 ESADLAR 480 (514)
T ss_dssp HHHHHCS
T ss_pred HHHHhcc
Confidence 9987653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.3e-22 Score=198.33 Aligned_cols=335 Identities=10% Similarity=-0.024 Sum_probs=225.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
+..|..+...+.+.|++++|+.+|+++.+. .+.+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 345666677777777777777777777654 23345566666777777777777777777776664 3345566666666
Q ss_pred HHcCCCHHHHHHHhhccCC--C-Ch---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 174 YGSCRRKRDACKVFDDMCE--R-SV---VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
|.+.|++++|...|+++.. | +. ..+..++..+... .+..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHH
Confidence 6666666666666666532 2 22 3444443331100 1112233355566677
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+++.+
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766666654 23556666677777777777777777776653 4567777777777778888888888877775
Q ss_pred CCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHH
Q 046312 325 SSISPN-YVTFLGV------------LCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 325 ~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A 386 (514)
. .|+ ...+..+ ..+|...|++++|..+|+++.+. .|+ ...+..+...+.+.|++++|
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3 333 2333333 67788889999999999888865 344 34677888888899999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH------------HHHhcC--
Q 046312 387 YTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN------------KYAEVG-- 450 (514)
Q Consensus 387 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-- 450 (514)
...++++. .+.+...|..+..+|...|+ ++.|...++.+.++.|+++.++..++. .|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 99998875 33467888889999999999 999999999999999988888887773 355555
Q ss_pred ---CHHHHHHHHHHH
Q 046312 451 ---MWEKVSNVRRFM 462 (514)
Q Consensus 451 ---~~~~A~~~~~~m 462 (514)
+.+++.+.++++
T Consensus 392 ~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKL 406 (450)
T ss_dssp TTCCTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 566777777763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.1e-22 Score=198.68 Aligned_cols=351 Identities=11% Similarity=-0.021 Sum_probs=234.7
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+.++..+..+...|. +.|++++|..+|+++.. +.++.+|..+..++...|++++|+..|+++.+.+ +.+...+..
T Consensus 23 p~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLL--AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 446788899999999 99999999999998742 4567889999999999999999999999998864 345668999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCc---chHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCCh
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGLDSDV---YTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 211 (514)
+..++...|++++|.+.++++.+.. +.+. .++..++..+... .+..+...+.+.|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCH
Confidence 9999999999999999999998764 2234 5666665542211 122233344455555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555442 2344555555555555566666655555555543 224455555556666666666666666555
Q ss_pred Cc--C-CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHH
Q 046312 292 EE--I-NVWTWSAM------------ILGLAQHGYAEEALELFSNMKNSSISPN-----YVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 292 ~~--~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~ 351 (514)
.+ | +...+..+ ...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 2 22333322 67778888888888888888773 344 335677777888888888888
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH------------HHhcC--CC
Q 046312 352 RYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSA------------SSIHD--AK 415 (514)
Q Consensus 352 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~~--~~ 415 (514)
..++++.+. .+.+...|..+..+|...|++++|...++++. ..|+ ...+..+..+ |...| ..
T Consensus 316 ~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 888887764 13346778888888888888888888888774 4454 4455544422 33333 11
Q ss_pred CcchHHHHHHHH-HHhcCCCCC
Q 046312 416 YQDGVGNEVRRR-LLELEPRGS 436 (514)
Q Consensus 416 ~~~~~a~~~~~~-~~~~~p~~~ 436 (514)
...+++.+.++. +.+..|+..
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 125667777775 667777643
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-22 Score=203.67 Aligned_cols=399 Identities=8% Similarity=-0.074 Sum_probs=314.9
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
...+...++...+...++.+.+.. |++..+..+...|. +.|++++|...|+++.. +.++.+|..+..++.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV--SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH--HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 344455588999999999999877 78999999999999 99999999999998742 4455789999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh-------------------------------
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS------------------------------- 158 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 158 (514)
+++|+..|+++.+.+ +++......++..+........+.+.+..+...
T Consensus 89 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998874 345555555555444332222222222111100
Q ss_pred ----CC---------CCCcchHHHHHHHHHc---CCCHHHHHHHhhccCC-----------------CChhhHHHHHHHH
Q 046312 159 ----GL---------DSDVYTNNNLVRFYGS---CRRKRDACKVFDDMCE-----------------RSVVSWNVIITVC 205 (514)
Q Consensus 159 ----~~---------~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----------------~~~~~~~~li~~~ 205 (514)
.. +.+...+..+...+.. .|++++|...|+++.. .+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00 0113334444444454 8999999999988743 1356788889999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+... .+..++..+...|...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999875 3488888999999999999999999999988753 36778899999999999999999
Q ss_pred HHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046312 286 LLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG 362 (514)
Q Consensus 286 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 362 (514)
..|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|...++++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99998864 456788999999999999999999999998753 33567788889999999999999999999987532
Q ss_pred CCCc----hHHHHHHHHHHHh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 363 IKPM----RIHYHTMADILAR---AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 363 ~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
-.++ ...+..+...+.+ .|++++|...++++. .+.+..++..+...+...|+ +++|...++.+.++.|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhcc
Confidence 2232 3388889999999 999999999999885 34467888999999999999 9999999999999999
Q ss_pred CCCchHHHH
Q 046312 434 RGSQNLVIV 442 (514)
Q Consensus 434 ~~~~~~~~l 442 (514)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 887665544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.3e-21 Score=192.55 Aligned_cols=390 Identities=11% Similarity=0.010 Sum_probs=294.6
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLK 137 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 137 (514)
...+..+...+. +.|++++|...|+++.. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 25 a~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFF--TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHH--HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 466777777888 89999999999998743 4566788999999999999999999999998863 345667888889
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-------------------------
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------------------------- 192 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------- 192 (514)
++...|++++|...++.+ .. .|+.. ...+..+...+...+|...++++..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999633 22 22211 1122333333444555555555422
Q ss_pred ------------CChh---hHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHh
Q 046312 193 ------------RSVV---SWNVIITVCVE--------NLWLGEAVGYFVKMKDLGFEPD--------ETTMLVVLSACT 241 (514)
Q Consensus 193 ------------~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~t~~~ll~~~~ 241 (514)
.+.. ....+...+.. .|++++|..+++++.+.. |+ ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHH
Confidence 1111 22222222222 247889999999988753 33 235666777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
..|++++|...++.+.+... +...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999999999998764 478888999999999999999999998875 4578899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---- 394 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 394 (514)
++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.|+++.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99998853 2345778888899999999999999999998752 3346688889999999999999999998873
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 395 ----FQPNPIVLRALLSASSIH----------DAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 395 ----~~p~~~~~~~l~~~~~~~----------~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.......+..+...+... |+ +++|...++.+.+..|+++.++..++.+|.+.|++++|.+.++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111223344455667777 88 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 046312 461 FMKNVGL 467 (514)
Q Consensus 461 ~m~~~~~ 467 (514)
+..+...
T Consensus 487 ~al~~~~ 493 (537)
T 3fp2_A 487 DSAILAR 493 (537)
T ss_dssp HHHHHC-
T ss_pred HHHHhCC
Confidence 9887543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=5.9e-20 Score=185.43 Aligned_cols=393 Identities=9% Similarity=-0.021 Sum_probs=298.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
...+...++...+...++..++.. +.++..+..+...|. +.|++++|...|++... +.++.+|..+..++...|+
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYI--STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 334444578889999999998876 456788999999999 99999999999998743 4456788999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC------CCCCcc------------------
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG------LDSDVY------------------ 165 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------------ 165 (514)
+++|++.|+.+ . ..|+.. ...+..+...+....|...++.+.... ..|+..
T Consensus 109 ~~~A~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSVL-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHHH-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999743 2 223322 222334445555677777777774321 111111
Q ss_pred ------------hHHHHHHHHHcC--------CCHHHHHHHhhccCC--CC--------hhhHHHHHHHHHhCCChhHHH
Q 046312 166 ------------TNNNLVRFYGSC--------RRKRDACKVFDDMCE--RS--------VVSWNVIITVCVENLWLGEAV 215 (514)
Q Consensus 166 ------------~~~~li~~~~~~--------~~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~ 215 (514)
....+...+... |++++|..+++++.+ |+ ..++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 222233232222 478899999998843 22 235677778899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-- 293 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 293 (514)
..|+++.+. .|+...+..+...+...|++++|...++.+.+... .+..++..+...|...|++++|...|+++.+
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999986 46688888999999999999999999999998864 3678899999999999999999999998875
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC----chH
Q 046312 294 -INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP----MRI 368 (514)
Q Consensus 294 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~ 368 (514)
.+...|..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+...-.+ ...
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 356789999999999999999999999999863 34466888889999999999999999999887521111 122
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 369 HYHTMADILARA----------GHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 369 ~~~~li~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+..+...+.+. |++++|...|+++. .+.+...+..+...+...|+ +++|.+.++.+.++.|...
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcH
Confidence 244556677777 99999999999986 44467889999999999999 9999999999999999876
Q ss_pred chH
Q 046312 437 QNL 439 (514)
Q Consensus 437 ~~~ 439 (514)
...
T Consensus 497 ~~~ 499 (537)
T 3fp2_A 497 EKL 499 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.1e-19 Score=168.48 Aligned_cols=322 Identities=9% Similarity=-0.052 Sum_probs=195.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445666667777777777777777776642 3344566666677777777777777777776653 2344556666666
Q ss_pred HHcCCCHHHHHHHhhccCC--C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 174 YGSCRRKRDACKVFDDMCE--R----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
+...|++++|...|++..+ | +...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666522 2 1222222210000 001112234555566666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|...++.+.+... .+..++..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666655542 2455566666666666666666666666543 3456666666677777777777777777665
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-h----HHHHHHHHHHHhcCCHHHHH
Q 046312 325 SSISPNYVTFL------------GVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-R----IHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 325 ~g~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~ 387 (514)
.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..+...+.+.|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 11222221 2245567777888888887777764 233 1 22445667777788888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
+.++++. .+.+...+..+...+...|+ +++|.+.++.+.++.|++..++..+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8777764 33366777777777888888 8888888888888888777666666665544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.8e-18 Score=163.34 Aligned_cols=304 Identities=12% Similarity=0.025 Sum_probs=228.0
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 206 (514)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++ .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 455666667777777777777777777664 334566666677777777777777777666 2234556666666777
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEP---D-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
..|++++|...|+++.+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 777777777777766654 33 1 122211111100 112234567889999999
Q ss_pred HHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 283 CARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 283 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+|.+.|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999875 467889999999999999999999999999853 44677888999999999999999999999987
Q ss_pred hhCCCCc-hHHHH------------HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCCCCcchH
Q 046312 360 VHGIKPM-RIHYH------------TMADILARAGHLKEAYTFIMNMP-FQPN-P----IVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 360 ~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~~~~ 420 (514)
. .|+ ...+. .+...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|+ ++.
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 290 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK---PVE 290 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC---HHH
Confidence 5 343 22222 23667889999999999999885 3444 3 335567788999999 999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|...++.+.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.1e-19 Score=169.23 Aligned_cols=346 Identities=11% Similarity=0.030 Sum_probs=162.3
Q ss_pred CCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 046312 74 SSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQA 153 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 153 (514)
+.|++++|...+++++ .| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999997 55 4899999999999999999999965 2577799999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 046312 154 NVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTM 233 (514)
Q Consensus 154 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 233 (514)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45678889999999999999999888864 67789999999999999999999999977 478
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChH
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAE 313 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (514)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999988 378899999999999999999988777655 44444557889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC------chHHHHHHHHHHHhcCCHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP------MRIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 387 (514)
+|..+++...... +-....|+-+.-+|++- ++++..+.++....+-.++| +...|..++-.|...++++.|.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999988643 34455666666666653 34444444443333224444 3567888999999999999998
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 388 TFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 388 ~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
..+-+-+ ..-+...+ .....+..+ .+---++.....+..|. .++.|..++...=+...+..+++
T Consensus 303 ~tm~~h~~~a~~~~~f---~~~~~kv~n---~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 303 ITMMNHPTDAWKEGQF---KDIITKVAN---VELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHSTTTTCCHHHH---HHHHHHCSS---THHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHhCChhhhhhHHH---HHHHhchhH---HHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHHHHHHHH
Confidence 8776664 22233332 233344444 44455555555544443 34444444433334444444333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.2e-18 Score=161.02 Aligned_cols=265 Identities=8% Similarity=-0.028 Sum_probs=145.8
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHH
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVI 201 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l 201 (514)
.+.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++ .+.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34555566666667777777777777777776664 334555556666666777777777766666 22345566666
Q ss_pred HHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 202 ITVCVENL-WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 202 i~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 66666666 6677777776666543 223455566666666666666666666666655422 33344445555555555
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCcHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS--------ISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
+++|...|++..+ .+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 5555555555443 234455555555555555555555555554421 01123344444445555555555
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.
T Consensus 255 A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555555544421 1123344444444445555555555554443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-17 Score=155.38 Aligned_cols=279 Identities=10% Similarity=-0.035 Sum_probs=139.7
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 162 SDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238 (514)
Q Consensus 162 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 238 (514)
.+...+..+...+...|++++|.++|+++ .+.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34444455555555555555555555554 22233344444455555555555555555555432 223444445555
Q ss_pred HHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHH
Q 046312 239 ACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEE 314 (514)
Q Consensus 239 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 314 (514)
.+...| ++++|...++.+.+... .+...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 555555 55555555555554431 2344455555555555555555555555443 223444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-------CCCchHHHHHHHHHHHhcCCHHHHH
Q 046312 315 ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-------IKPMRIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 387 (514)
|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...+.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 555555555432 22344455555555555555555555555554210 0122344555555555555555555
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
..++++. .+.+...+..+...+...|+ +++|.+.++.+.++.|+++..+..++.++
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555543 22234445555555555555 55555555555555555555555555555
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=4.9e-17 Score=161.97 Aligned_cols=366 Identities=12% Similarity=-0.020 Sum_probs=295.7
Q ss_pred ChHHHHHHHHhcccCC----CCChHHHHHHHcccCCCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcc
Q 046312 59 DAQILKELVRFCTLSS----SKNLTYARSILCNYVNDSVPIPWNNLIRGYAW----SDRPREAVWVFIDMKRRGIKPTEF 130 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~ 130 (514)
++..+..+-..|. . .++++.|...|++.....++.++..|-..|.. .+++++|++.|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~--~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYF--QGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHH--cCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5566666666665 5 89999999999987535567788888888888 899999999999998865 556
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccC-CCChhhHHHH
Q 046312 131 TYPFVLKACAE----ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMC-ERSVVSWNVI 201 (514)
Q Consensus 131 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l 201 (514)
.+..+...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++.. ..+...+..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67777777777 789999999999998876 56677888888887 789999999998873 3567788888
Q ss_pred HHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 202 ITVCVE----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 202 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
...|.. .+++++|...|++..+.| +...+..+...+.. .+++++|...++...+.| +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 899999999999998865 55667777777765 789999999999998875 4566777778
Q ss_pred HHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 274 MYAK----CGAVGCARLLFSRMEE-INVWTWSAMILGLAQH-----GYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 274 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
.|.. .++.++|..+|++..+ .+...+..+...|... +++++|..+|++..+.| +...+..+...|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8887 8999999999998875 5677888888888887 89999999999999875 44566667777766
Q ss_pred cC---cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 046312 344 AG---MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI----H 412 (514)
Q Consensus 344 ~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 412 (514)
.| +.++|..+|++..+. .+...+..+...|.. .+++++|...|++.....+...+..|...|.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 889999999999873 356778888888888 89999999999988644567788888888887 7
Q ss_pred CCCCcchHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 046312 413 DAKYQDGVGNEVRRRLLELEPR---GSQNLVIVANKYAE 448 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (514)
++ .++|...++++.+.+|+ ++.+...++.++..
T Consensus 417 ~d---~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RD---YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CC---HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78 99999999999999854 55555566555543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=4.6e-16 Score=154.90 Aligned_cols=362 Identities=14% Similarity=0.002 Sum_probs=300.5
Q ss_pred HHHHcccCCCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCCchHHHHHHH
Q 046312 82 RSILCNYVNDSVPIPWNNLIRGYAW----SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAE----ISGLNEGMQVQA 153 (514)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 153 (514)
...+.......++.++..+-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444433215677788888888887 899999999999998865 56677788888887 899999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHC
Q 046312 154 NVTKSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMCE-RSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 154 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 224 (514)
+..+.| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 56777888888988 8899999999998843 467788888888887 78999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCc-CC
Q 046312 225 GFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCARLLFSRMEE-IN 295 (514)
Q Consensus 225 ~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~ 295 (514)
| +...+..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|..+|++..+ .+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 66777788888877 899999999999999876 56677788888886 8899999999998775 56
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhhCCCCc
Q 046312 296 VWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA-----GMVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 296 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~ 366 (514)
...+..+...|.. .++.++|..+|++..+.| +...+..+...|... ++.++|...+++..+. + +
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~ 327 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---D 327 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---C
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---C
Confidence 7788888888888 899999999999998765 455666677777776 8999999999999874 2 4
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHhcCCCCCchH
Q 046312 367 RIHYHTMADILARAG---HLKEAYTFIMNMPFQPNPIVLRALLSASSI----HDAKYQDGVGNEVRRRLLELEPRGSQNL 439 (514)
Q Consensus 367 ~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (514)
...+..+...|.+.| +.++|.+.|++.....+...+..|...|.. .++ .++|...++++.+.+ ++.++
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKD---EQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHhCC--CHHHH
Confidence 456777888887766 789999999988644678888888888888 677 999999999998865 46788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 046312 440 VIVANKYAE----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 440 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (514)
..|+.+|.+ .++.++|...|++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999998774
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.4e-18 Score=162.22 Aligned_cols=283 Identities=9% Similarity=-0.038 Sum_probs=164.5
Q ss_pred CCCchHHHH-HHHHHHHcC---CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 107 SDRPREAVW-VFIDMKRRG---IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 107 ~g~~~~a~~-~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
.|++++|++ .|++..+.. ...+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666666 555443321 01123445566666666666666666666666553 3345566666666666666666
Q ss_pred HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHhccC
Q 046312 183 ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV---------------VLSACTELG 244 (514)
Q Consensus 183 A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~---------------ll~~~~~~g 244 (514)
|...|+++ .+.+..++..+...+...|++++|...++++.+.... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666655 2335566666666777777777777777776664311 1111110 122223666
Q ss_pred ChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFS 320 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 320 (514)
++++|...++.+.+..... +..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776654332 456666677777777777777777766553 345667777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC--C-------chHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 321 NMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK--P-------MRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p-------~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
++.+.. +.+..++..+..++...|++++|...++++.+...-. | ....|..+..+|.+.|++++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 776642 2345566667777777777777777777766531100 0 14566677777777777777776665
Q ss_pred h
Q 046312 392 N 392 (514)
Q Consensus 392 ~ 392 (514)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 4
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=7.2e-18 Score=161.36 Aligned_cols=279 Identities=11% Similarity=-0.061 Sum_probs=202.2
Q ss_pred CCCHHHHHH-HhhccCC--C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 177 CRRKRDACK-VFDDMCE--R-----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 177 ~~~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
.|++++|.. .+++... + +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 5554411 1 23456666667777777777777777776653 3455666667777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHH---------------HHHHHHHcC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSA---------------MILGLAQHG 310 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~~ 310 (514)
|...++.+.+... .+..++..+..+|...|++++|...|+++.+ | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 7777777766652 3566667777777777777777777776653 1 1111110 233344889
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
++++|..+++++.+..... +..++..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998853221 4788888999999999999999999999875 133477889999999999999999999
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCHHHHH
Q 046312 390 IMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-----------SQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 390 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 456 (514)
|+++. .+.+...+..+...+...|+ +++|...++.+.++.|++ ..+|..++.+|...|++++|.
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99885 34467889999999999999 999999999999998877 678999999999999999999
Q ss_pred HHHHHH
Q 046312 457 NVRRFM 462 (514)
Q Consensus 457 ~~~~~m 462 (514)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988743
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=6e-16 Score=155.71 Aligned_cols=396 Identities=11% Similarity=-0.000 Sum_probs=289.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+-+...|..++.. . +.|+++.|+.+|+++.. +.+...|..++..+.+.|++++|..+|+++.+. .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~--~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-A--QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-H--HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-H--HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 3367788888885 6 68999999999998863 234467889999999999999999999999875 467767766
Q ss_pred HHHHH-hccCCchHHHH----HHHHHHHh-CCCC-CcchHHHHHHHHHc---------CCCHHHHHHHhhccCC-CC---
Q 046312 135 VLKAC-AEISGLNEGMQ----VQANVTKS-GLDS-DVYTNNNLVRFYGS---------CRRKRDACKVFDDMCE-RS--- 194 (514)
Q Consensus 135 ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~--- 194 (514)
.+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34677777765 66666543 5444 45677777776655 6889999999998854 22
Q ss_pred hhhHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHhc--
Q 046312 195 VVSWNVIITVC-------------VENLWLGEAVGYFVKMK------DLG---FEPDE--------TTMLVVLSACTE-- 242 (514)
Q Consensus 195 ~~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~t~~~ll~~~~~-- 242 (514)
...|....... .+.+++..|..++.++. +.. ++|+. ..|...+.....
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 12333322211 12345677777776632 111 24441 344444433222
Q ss_pred --cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCc---C-CHHH
Q 046312 243 --LGNL----SLGKWVHLQLIERGTVLNCQLGTALIDMYAK-------CGAVG-------CARLLFSRMEE---I-NVWT 298 (514)
Q Consensus 243 --~g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~ 298 (514)
.++. +.+..+|++.+... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 1233 36778899888874 3467888888888875 79987 89999998874 3 5788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 375 (514)
|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|+++.|..+|++..+. .|+ ...|...+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHH
Confidence 999999999999999999999999984 554 247888888888999999999999999863 333 333333222
Q ss_pred H-HHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc----hHHHHHHHHHh
Q 046312 376 I-LARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ----NLVIVANKYAE 448 (514)
Q Consensus 376 ~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~ 448 (514)
. +...|+.++|..+|++.. ..| +...|..++..+...|+ .+.|..+++++....|.++. .|...+.....
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 346899999999999875 334 67889999999999999 99999999999998876655 67788888889
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 046312 449 VGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~ 466 (514)
.|+.+.+..+.+++.+..
T Consensus 476 ~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 999999999999887543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=9.4e-17 Score=161.58 Aligned_cols=404 Identities=10% Similarity=0.008 Sum_probs=292.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 046312 91 DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNL 170 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (514)
+.+..+|..++.. .+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|++++.. .|+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 3467789999984 7899999999999999886 3445567999999999999999999999999876 4677777777
Q ss_pred HHH-HHcCCCHHHHHH----HhhccC------CCChhhHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCCH
Q 046312 171 VRF-YGSCRRKRDACK----VFDDMC------ERSVVSWNVIITVCVE---------NLWLGEAVGYFVKMKDLGFEPDE 230 (514)
Q Consensus 171 i~~-~~~~~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~ 230 (514)
+.. ....|+.+.|.+ +|++.. ..+...|...+....+ .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 653 345677776655 665541 2356778888776655 68899999999999873111112
Q ss_pred HHHHHHHHH---H----------hccCChHHHHHHHHHHHH------hC---CCCc--------hhHHHHHHHHHHhc--
Q 046312 231 TTMLVVLSA---C----------TELGNLSLGKWVHLQLIE------RG---TVLN--------CQLGTALIDMYAKC-- 278 (514)
Q Consensus 231 ~t~~~ll~~---~----------~~~g~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~li~~~~~~-- 278 (514)
..|...... + ...++++.|..+++.+.. .. +.|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 333322221 1 134456677766665321 11 2332 24555555433322
Q ss_pred --CCH----HHHHHHHHhcCc---CCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHH
Q 046312 279 --GAV----GCARLLFSRMEE---INVWTWSAMILGLAQ-------HGYAE-------EALELFSNMKNSSISPNYVTFL 335 (514)
Q Consensus 279 --g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~ 335 (514)
++. .++..+|++... .+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 467788888775 467888888888775 79987 8999999998632233477788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH-HH
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSA-SS 410 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~ 410 (514)
.++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++.. ..|+ ...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 8889999999999999999999863 554 2578889999999999999999999985 3332 2333222222 33
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CCceeEEEECCeEEEEEec
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK-K-MKGMSWVELGGSIHRFYSG 488 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 488 (514)
..|+ .+.|..+++.+.+..|+++..+..++..+.+.|+.++|..+|++....+.. | .....| ..++.-
T Consensus 403 ~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw-------~~~~~~ 472 (530)
T 2ooe_A 403 CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW-------ARFLAF 472 (530)
T ss_dssp HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH-------HHHHHH
T ss_pred HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH-------HHHHHH
Confidence 5888 999999999999999999999999999999999999999999999876532 2 122345 344555
Q ss_pred ccCCcChHHHHHHHHHHHHHhhh
Q 046312 489 YDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 489 ~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
...+|+.+.+..++.++.+..++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCch
Confidence 67789999999999998887763
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.3e-17 Score=159.44 Aligned_cols=261 Identities=11% Similarity=-0.096 Sum_probs=207.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44567778888888888888888888888764 44677888888888888888888888888888753 35778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCcCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEEIN-------------VWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-PNYVTFLGVLC 339 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 339 (514)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|..+++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888876521 223344577889999999999999999986422 25788889999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|...|+++. ..| +..++..+...+...|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--- 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA--- 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---
Confidence 999999999999999999875 23457789999999999999999999999885 334 58889999999999999
Q ss_pred chHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPR------------GSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+++|...++.+.++.|+ +...+..++.++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 356788999999999999999888765
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.1e-17 Score=155.68 Aligned_cols=382 Identities=10% Similarity=0.035 Sum_probs=171.8
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCC
Q 046312 29 RQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSD 108 (514)
Q Consensus 29 ~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g 108 (514)
.....|+..+++++++.++.+.+ +++.+|..|..++. +.|++++|...|.+. +|+..|..++.++...|
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l--~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQL--QKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHH--HcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCC
Confidence 34566788889999999999888 44569999999999 999999999999764 57789999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 109 RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 109 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
++++|+.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988777664 4567789999999999999999998885 4777899999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 046312 189 DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 189 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
.+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-.
T Consensus 147 ~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 147 NV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp HT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred Hh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 87 48999999999999999999999988 3789999999999999999999654443 22344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCC------CHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQH--GYAEEALELFSNMKNSSISP------NYVTFLGV 337 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p------~~~~~~~l 337 (514)
..++..|.+.|.+++|..+++.... .....|+-|.-+|++- ++..+.++.|..- -.++| +...|.-+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence 5799999999999999999998875 4567788887777764 3444555554421 12223 24457777
Q ss_pred HHHHhccCcHHHHHHHHH-------------HHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFH-------------EMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRA 404 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~-------------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 404 (514)
...|.+.++++.|....- ++..+ ..+...|-..+..|... .+..--.++.-+.-+-|. ..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~-~p~~l~~ll~~l~~~ld~---~r 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDH---TR 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCCH---HH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhccCc---HH
Confidence 777888888888765322 22211 33455565556555521 222222222222111121 22
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.+.-+.+.|. +......+..+... ++..+-.+|-..|...++++.-+.-.+
T Consensus 362 ~v~~~~~~~~---l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 AVNYFSKVKQ---LPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHTTC---TTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCC---cHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344455555 55555555444432 222333466677777777665554444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.6e-17 Score=158.86 Aligned_cols=260 Identities=10% Similarity=-0.025 Sum_probs=164.7
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 206 (514)
..+..+...+.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|++. .+.+..+|..+..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345555555556666666666666655553 334555566666666666666666666555 2234556666666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPD-----------ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-NCQLGTALIDM 274 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 274 (514)
..|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 6777777777776666532 22 1223334666777777777777777777765331 56677777777
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
|...|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 7777888888777777654 356777888888888888888888888877742 233667777778888888888888
Q ss_pred HHHHHHHHhhCCC----------CchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 352 RYFHEMEHVHGIK----------PMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 352 ~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..|+++.+...-. .+...|..+..++...|+.+.+..+..+-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8888877642110 12566777888888888888888777654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.1e-16 Score=154.59 Aligned_cols=366 Identities=9% Similarity=-0.033 Sum_probs=215.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHc-----C--CCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhC------C
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRR-----G--IKPT-EFTYPFVLKACAEISGLNEGMQVQANVTKSG------L 160 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~ 160 (514)
..||.+...+...|++++|++.|++..+. + ..|+ ..+|..+..+|...|++++|...+++..+.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 45777777777777777777777765431 1 1222 2456777777777777777777777665431 0
Q ss_pred CC-CcchHHHHHHHHHc--CCCHHHHHHHhhccC---CCChhhHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCCHH
Q 046312 161 DS-DVYTNNNLVRFYGS--CRRKRDACKVFDDMC---ERSVVSWNVIITV---CVENLWLGEAVGYFVKMKDLGFEPDET 231 (514)
Q Consensus 161 ~~-~~~~~~~li~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~ 231 (514)
.+ ...++..+..++.. .+++++|...|++.. +.+...+..+..+ +...++.++|++.+++..+.. +.+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 11 12344444444433 345777777777762 2234444444333 344566777777777776653 23444
Q ss_pred HHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHH
Q 046312 232 TMLVVLSACT----ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMIL 304 (514)
Q Consensus 232 t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 304 (514)
.+..+...+. ..|+.++|...+++...... .+..++..+...|...|++++|...|++..+ | +..++..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 4444444433 33566777777777776653 3566677777778888888888887777664 2 3445555544
Q ss_pred HHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046312 305 GLAQ-------------------HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP 365 (514)
Q Consensus 305 ~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 365 (514)
.|.. .+..++|...+++..+.. +.+..++..+...+...|++++|...|++..+. ...+
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~ 367 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTP 367 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCC
Confidence 4432 234577888888877643 334556778888999999999999999999864 3332
Q ss_pred ch--HHHHHHHH-HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 366 MR--IHYHTMAD-ILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 366 ~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
.. ..+..+.. .+...|+.++|+..|++.. +.|+....... .+.+.++++...+.+|+++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 21 12333333 2346899999999998875 66665433222 344677778888899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEE
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWV 476 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 476 (514)
|+.+|...|++++|.+.|++..+.+-..+.+.+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999998776655666663
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=8.8e-16 Score=141.30 Aligned_cols=271 Identities=10% Similarity=-0.010 Sum_probs=212.4
Q ss_pred HHHHcCCCHHHHHHHhhccCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 172 RFYGSCRRKRDACKVFDDMCERSV----VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
+-....|+++.|...++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567888888888877644332 3445667888999999988876654 23567778888888888999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 248 LGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
+|.+.++++...+..| +...+..+...|...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999999988876544 456677777899999999999999998 5678899999999999999999999999999863
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHH
Q 046312 327 ISPNYVTF---LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIV 401 (514)
Q Consensus 327 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 401 (514)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++. ..| +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 553321 22334445669999999999999985 35568889999999999999999999999975 334 6788
Q ss_pred HHHHHHHHHhcCCCCcchH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 402 LRALLSASSIHDAKYQDGV-GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+..++..+...|+ .++ +.+.++++.+.+|+++. +.+...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGK---PPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 9999999999999 765 67899999999999874 334555666666665443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=5.6e-16 Score=145.40 Aligned_cols=273 Identities=10% Similarity=-0.025 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665542 2244455555666666666666666666665553 22344444555555
Q ss_pred HcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHhccCChHHH
Q 046312 175 GSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV-LS-ACTELGNLSLG 249 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~-~~~~~g~~~~a 249 (514)
...|++++|.+.++++.. | +...+..+... .|+......+ .. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544411 1 11111111000 0001111111 11 25667777888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
...++.+.+.... +..++..+...|...|++++|...++++.+ .+...|..+...+...|++++|...++++.+..
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888877776533 567777778888888888888888877654 356778888888888999999999998887753
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-----------chHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 327 ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-----------MRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+.+..++..+..++...|++++|...++++.+.. -.. +...+..+..++.+.|+.++|..++++..
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3356778888888889999999999998887652 111 46678888889999999999999887664
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.9e-16 Score=148.63 Aligned_cols=257 Identities=9% Similarity=-0.137 Sum_probs=172.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233444444444444555555555555444443 1234444444555555
Q ss_pred cCCHHHHHHHHHhcCc--C-CHHHHHH-------------H-HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE--I-NVWTWSA-------------M-IL-GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~--~-~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
.|++++|.+.++++.+ | +...+.. + .. .+...|++++|..+++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555544432 1 1111111 1 22 3667788999999999988753 336778888888
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--- 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ--- 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---
Confidence 999999999999999998875 13346788889999999999999999998875 34467888999999999999
Q ss_pred chHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPR------------GSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+++|.+.++.+.+..|+ +...+..++.+|.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6778889999999999999999998754
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.5e-14 Score=151.63 Aligned_cols=382 Identities=12% Similarity=0.032 Sum_probs=285.1
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-----PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTY 132 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 132 (514)
.++.--...++.|. ..|.+.+|.+++++....++ ...-+.++....+. +..+..++.++.... ..
T Consensus 983 ~~PeeVs~~vKaf~--~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred cCHHHhHHHHHHHH--hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 34555567788888 88999999999988753333 24456666666666 556666666655421 13
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChh
Q 046312 133 PFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 133 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 212 (514)
.-+...+...|.+++|..+|++.. -.....+.+ +-..+++++|.++.+++. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 446778888999999999998752 111112222 237788999999998773 4678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
+|+..|.+. -|...|..++.+|.+.|++++|.+++...++.. ++..+.+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999663 467788889999999999999999999887765 34444456999999999988655443 4
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHH
Q 046312 293 EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHT 372 (514)
Q Consensus 293 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 372 (514)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHH
Confidence 567777778899999999999999999884 378899999999999999999888763 3578888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--C
Q 046312 373 MADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV--G 450 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g 450 (514)
+..+|...|++..|......+. .+...+..++..|...|. ++++.+.++....++|.....|.-|+.+|.+- +
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~---feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGY---FEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 8888999999999988777644 455666688999999999 99999999999999988888888788877764 4
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CCceeEEEECCeEEEEEecccCCcChHHHHH
Q 046312 451 MWEKVSNVRRFMKNVGLKK-----MKGMSWVELGGSIHRFYSGYDSQVELAGIYQ 500 (514)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 500 (514)
+..++.++|.. +.++++ ....-| ..++.-|.+.|+++.|..
T Consensus 1331 klmEhlk~f~~--rini~k~~r~~e~~~lW-------~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1331 KMREHLELFWS--RVNIPKVLRAAEQAHLW-------AELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHH--hcccchHhHHHHHHHHH-------HHHHHHHHhcccHHHHHH
Confidence 44455555442 233433 333446 455566777788887774
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=7.1e-16 Score=141.94 Aligned_cols=248 Identities=9% Similarity=0.015 Sum_probs=205.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDE--TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
|+-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-.|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999988776443 4443 3556678999999999999976654 24567888899999999999
Q ss_pred CHHHHHHHHHhcCc----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE----I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 280 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.++|++.++++.. | +...+..+...+...|++++|+..+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 4 566777888999999999999999987 467788889999999999999999999
Q ss_pred HHHHHhhCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 355 HEMEHVHGIKPMRIHY---HTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++...|+ +++|.+.++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR---WEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 999975 4664322 223344455699999999999986 55678999999999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHH-HHHHHHHHHhCCC
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEK-VSNVRRFMKNVGL 467 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 467 (514)
+.+|+++.++..++.++...|+.++ +.++++++.+...
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999976 6789999887553
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=7.4e-14 Score=146.51 Aligned_cols=377 Identities=10% Similarity=0.023 Sum_probs=283.4
Q ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHhC--CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHH
Q 046312 27 KARQCLSFLKLCCSKKHLYQIHAQIQVSG--LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGY 104 (514)
Q Consensus 27 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 104 (514)
.++..+..+...+.+.++..+++...-.+ +.-+....+.|+..-. +. +......+.++.. .-+ ...+...+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAI--ka-D~~Rv~eyI~kLd-~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAI--KA-DRTRVMEYINRLD-NYD---APDIANIA 1059 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHH--Hh-ChhhHHHHHHHhh-hcc---HHHHHHHH
Confidence 33444455556678888888888887332 2345577777777666 33 4444444444443 222 45577888
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh-ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA-EISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 183 (514)
...|.+++|..+|++.. .+...+..+. ..+++++|.++.++. -++.+|..+..++.+.|++++|
T Consensus 1060 i~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 89999999999999852 1222223333 778999999998855 2478899999999999999999
Q ss_pred HHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.+.|.+. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999775 678889999999999999999999999888764 34333445899999999988655443 2 34
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
+...+..+.+.|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5667778999999999999999999996 48999999999999999999999986 356889999999999
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHH
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
.|++..|...... +..+...+..++..|.+.|.+++|+.+++... ..| ....|.-|...+.+.. .++.
T Consensus 1263 ~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~----pekl 1332 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK----PQKM 1332 (1630)
T ss_pred hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC----HHHH
Confidence 9999999876543 23456677799999999999999999998875 333 3455656666666643 3444
Q ss_pred HHHHHHHHh---cCC-----CCCchHHHHHHHHHhcCCHHHHHH
Q 046312 422 NEVRRRLLE---LEP-----RGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 422 ~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
.+.++...+ +.| .+...|..++..|.+.|.++.|..
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 444444433 222 456679999999999999999983
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.7e-15 Score=147.65 Aligned_cols=367 Identities=10% Similarity=-0.067 Sum_probs=238.1
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-----------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc--
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-----------DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRR-- 123 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 123 (514)
......||.|-..+. ..|++++|++.|++... .....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~--~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 48 EFKATMCNLLAYLKH--LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp --CCHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 344678998988888 89999999999976421 223467999999999999999999999887542
Q ss_pred --C--CCCC-cchHHHHHHHHhc--cCCchHHHHHHHHHHHhCCCCCcchHHHHHHH---HHcCCCHHHHHHHhhcc---
Q 046312 124 --G--IKPT-EFTYPFVLKACAE--ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF---YGSCRRKRDACKVFDDM--- 190 (514)
Q Consensus 124 --~--~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~--- 190 (514)
. ..++ ..++.....++.. .+++++|...|++..+.. +-++..+..+..+ +...++.++|.+.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 1112 2345555445544 457899999999999874 3345555555544 34567778888888776
Q ss_pred CCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 046312 191 CERSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 266 (514)
.+.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++...+..+. +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 33456666666555544 467889999999988764 456778889999999999999999999999987643 566
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 267 LGTALIDMYAKC-------------------GAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 267 ~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
++..+..+|... +..+.|...|++..+ .+...+..+...|...|++++|...|++.++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 666666665432 235667777776654 3456788899999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH
Q 046312 325 SSISPNYV--TFLGVLC-ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNP 399 (514)
Q Consensus 325 ~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~ 399 (514)
....+... .+..+.. .....|+.++|...|++..+ +.|+.......+ +.+..++++.. .+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 64433321 2222222 34567999999999999885 366644332222 23334444332 33467
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
.+|..+...+...|+ +++|.+.++++.+++|.+|.+...++
T Consensus 431 ~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEK---MQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHH---CC------------------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 889999999999999 99999999999999998887665544
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=168.26 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 164 VYTNNNLVRFYGSCRRKRDACKVFDDM-------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV 236 (514)
Q Consensus 164 ~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 236 (514)
..+||+||++|++.|++++|.++|++| ..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 457888888888888888888888665 4678888888888888888888898999999888889999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 237 LSACTELGNL-SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 237 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9988888874 6788889999988988998888888876665544433333
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=166.05 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=117.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRME-------EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
..-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886653 389999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGM-VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPF----QPNPIVLRALLSAS 409 (514)
Q Consensus 335 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~ 409 (514)
+++|.++++.|+ .+.|.++|++|.++ |+.||..+|++++....+.+-++.+.++..++.. .|...+...|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 999999999997 57899999999997 9999999999999877765444444333333221 11234444455555
Q ss_pred HhcC
Q 046312 410 SIHD 413 (514)
Q Consensus 410 ~~~~ 413 (514)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.7e-14 Score=127.95 Aligned_cols=217 Identities=7% Similarity=-0.093 Sum_probs=151.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C----C----HHHHHHH
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I----N----VWTWSAM 302 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 302 (514)
+..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|...|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444455555555555544444 3444555555555555555555555555443 1 1 4566777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 381 (514)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+... .| +...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhc
Confidence 77778888888888888887763 3442 2355667788888888888753 34 3567777888888888
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 382 HLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 382 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++++|...++++. .+.+...+..+...+...|+ ++.|...++.+.+..|+++.++..++.+|.+.|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888875 34467788888888888888 889999999998888888888888999999999999999998
Q ss_pred HHHHhCC
Q 046312 460 RFMKNVG 466 (514)
Q Consensus 460 ~~m~~~~ 466 (514)
++..+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8876543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.5e-14 Score=130.58 Aligned_cols=233 Identities=12% Similarity=-0.066 Sum_probs=156.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--c----hhHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--N----CQLGT 269 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 269 (514)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666677777777777777776665 556666667777777777777777777666543211 1 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
.+...|...|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777777777777777777776654 332 33555677777777777777642 22345566677777777888
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVR 425 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~ 425 (514)
++|...++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ .+.|...+
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 230 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHH
Confidence 88888888777641 3346667777777888888888888887764 33346777777778888888 88888888
Q ss_pred HHHHhcC------CCCCchHHHHH
Q 046312 426 RRLLELE------PRGSQNLVIVA 443 (514)
Q Consensus 426 ~~~~~~~------p~~~~~~~~l~ 443 (514)
+.+.++. |++...+..+.
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHH
Confidence 8887777 65554444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=4e-14 Score=124.33 Aligned_cols=194 Identities=15% Similarity=0.022 Sum_probs=151.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566777778888888888888888887764 356788888888889999999999999888753 23456777788
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 046312 339 CACNHA-----------GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRA 404 (514)
Q Consensus 339 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 404 (514)
.++... |++++|...+++..+. .|+ ...+..+...+...|++++|.+.|+++. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 9999999999999875 554 6778889999999999999999999885 5 78889999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
+...+...|+ +++|...++.+.+.+|+++.++..++.++.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999999999999999999999998764
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1e-13 Score=126.37 Aligned_cols=241 Identities=7% Similarity=-0.114 Sum_probs=178.7
Q ss_pred hCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFE---PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC 283 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 283 (514)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346777888888887765321 1345667777777888888888888888877653 356777888888888888888
Q ss_pred HHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 284 ARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 284 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887764 35678888888999999999999999998874 455444444555566779999999999888764
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 361 HGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 361 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.+++...+ .++..+...++.++|.+.++++. ..|+ ...+..+...+...|+ +++|...++.+.+.+|+
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch
Confidence 23444444 36677778888899999998875 3232 5778888999999999 99999999999999987
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+.. ....++...|++++|.+.+
T Consensus 248 ~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCH---HHHHHHHHHHHHHHC----
T ss_pred hHH---HHHHHHHHHHHHHhhHHHH
Confidence 643 4467788889999988776
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=2.8e-13 Score=123.38 Aligned_cols=242 Identities=12% Similarity=0.001 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACT 241 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 241 (514)
+......+...|++++|...|++. .+.+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555555555555555554 112333555555555555555555555555554221111 122444444555
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSN 321 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 321 (514)
..|++++|...++...+... .+...|..+...|...|++++|...+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT--------------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST--------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcCc--------------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555544432 2234444444455555555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCC---HHHHHHHHHhCC---
Q 046312 322 MKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGH---LKEAYTFIMNMP--- 394 (514)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~--- 394 (514)
..+.. +.+...+..+...+...+++++|...++++.+. .|+ ...+..+...+...|+ +++|...++++.
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 44431 112333333331222223555555555555543 222 3344444444444444 444444444432
Q ss_pred -CCCC------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 395 -FQPN------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 395 -~~p~------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
..|+ ...|..+...+...|+ +++|.+.++++.+++|+++.+...+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 1345556666666677 777777777777777776655555544443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=7.9e-13 Score=129.67 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046312 267 LGTALIDMYAKCG---AVGCARLLFSRMEE---INVWTWSAMILGLAQH----GYAEEALELFSNMKNSSISPNYVTFLG 336 (514)
Q Consensus 267 ~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (514)
.+..|...|...| +.++|++.|++..+ ++...+..+...|... +++++|..+|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 4555555555555 55555555555443 2223334444444333 45666666666655 22 2233333
Q ss_pred HHHH-H--hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046312 337 VLCA-C--NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-----HLKEAYTFIMNMPFQPNPIVLRALLSA 408 (514)
Q Consensus 337 ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~ 408 (514)
+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.+.|++.. ..+...+..|...
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 3333 2 3456666666666666543 2 3444444555554 33 6666666666665 4455555555544
Q ss_pred HHhc-CCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 046312 409 SSIH-DAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 409 ~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (514)
|... |-..+.++|...++++.+.+ ++.+...|+.+|.. ..+.++|...++...+.|.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4431 00112566666666655533 34455566666654 3456666666666665554
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1e-13 Score=136.01 Aligned_cols=270 Identities=12% Similarity=-0.012 Sum_probs=120.0
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCCh---HHHHHHHcccCCCCCcccHHHHHHHHHhCC----
Q 046312 36 KLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNL---TYARSILCNYVNDSVPIPWNNLIRGYAWSD---- 108 (514)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g---- 108 (514)
...++...+..++....+.|- +..+..|-..|. ..|+. ++|..+|++.. ..++..+..+...+...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~--~~g~~~d~~~A~~~~~~A~-~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQV--GTRDPAQIKQAEATYRAAA-DTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CTGGGTCC-------------------------------CHHHHHHHHHTC--CCH
T ss_pred HhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHH--ccCCCCCHHHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCC
Confidence 333556666666666666552 223333444444 55555 66666666665 335556666655444444
Q ss_pred -CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch---HHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH----
Q 046312 109 -RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN---EGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK---- 180 (514)
Q Consensus 109 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---- 180 (514)
++++|+..|++..+.|. ...+..+...|...+..+ .+.+.+......| +...+..|...|...+.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 55667777766666542 224555555555444332 2333344444343 234555555556555533
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHH
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENL---WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL----GNLSLGKWVH 253 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~~a~~~~ 253 (514)
+++..+++.....+...+..|...|.+.| +.++|+..|++..+.| .++...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33444444444455556666666666666 6666666666666655 33444334444444333 4555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDM-Y--AKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHG-----YAEEALELFSNMK 323 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~ 323 (514)
+... .| +...+..+... | ...+++++|..+|++..+ .+...+..|...|. .| ++++|..+|++..
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 5554 22 33333344433 2 234455555555544433 23344444444443 22 4444444444443
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=3.6e-13 Score=118.18 Aligned_cols=192 Identities=12% Similarity=-0.060 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+... .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3444445555555555555555555555432 22344445555555555555555555555555442 234445555555
Q ss_pred HHhc-----------CCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 275 YAKC-----------GAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 275 ~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
|... |++++|+..|++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 777777777776654 3 45667777777788888888888888877765 566777777777
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+...|++++|...|++..+. .| +...+..+...+.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888887764 34 3566777777777888888888777665
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.4e-12 Score=117.18 Aligned_cols=232 Identities=10% Similarity=-0.046 Sum_probs=146.5
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CCh----hhHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSV----VSWNVI 201 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l 201 (514)
|...+......+...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++... ++. ..|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556677888999999999999999999875 44566899999999999999999999998843 232 348899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~------------------- 139 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-T------------------- 139 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-C-------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-C-------------------
Confidence 999999999999999999998863 2344555555555555555555555555544432 1
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHH
Q 046312 282 GCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM---VEDGYRYFHEME 358 (514)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~ 358 (514)
.+...|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ ++.|...++++.
T Consensus 140 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 140 ------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 123344444422223335566666666555531 1223444444455555555 555555555555
Q ss_pred HhhCCCCc------hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 359 HVHGIKPM------RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 359 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+...-.|+ ...|..+...|.+.|++++|.+.++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43222233 1345556666666666666666666654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=4.7e-13 Score=122.03 Aligned_cols=240 Identities=9% Similarity=-0.140 Sum_probs=153.0
Q ss_pred hCCCchHHHHHHHHHHHcCCC---CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 106 WSDRPREAVWVFIDMKRRGIK---PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 106 ~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
..|++++|++.|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777664211 123456666777777777777777777777664 3356677777777777777777
Q ss_pred HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 183 ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 183 A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
|...|++. .+.+..+|..+...+.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777776 2335667777778888888888888888888775 344444444444556668888888888777766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
.. ++...+ .++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++..+. .|+.
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 42 233333 36666677777777777777766522 356667777777777777777777777764 3422
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 112233455556666665544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=5.5e-12 Score=114.96 Aligned_cols=225 Identities=10% Similarity=-0.049 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445556666666667777777777766662 234455556666666 667777777777666654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 270 ALIDMYAK----CGAVGCARLLFSRMEE-INVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 270 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|..+|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6677777766666554 355566666666766 777777777777777654 44455555566
Q ss_pred Hhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 046312 341 CNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI- 411 (514)
Q Consensus 341 ~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 411 (514)
|.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.|++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 665 67777777777777653 234555666666777 77777777777666422235555666666666
Q ss_pred ---cCCCCcchHHHHHHHHHHhcCCC
Q 046312 412 ---HDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 412 ---~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.++ .++|.+.++++.+.+|+
T Consensus 232 ~~~~~~---~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRN---EKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCC---STTHHHHHHHHHHHTCH
T ss_pred CCcccC---HHHHHHHHHHHHHcCCH
Confidence 666 77777777777776664
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2e-12 Score=116.17 Aligned_cols=204 Identities=11% Similarity=-0.001 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence 3445555555555556666655555555442 22344444444444555555555555544444321
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
.+...+..+...+...|++++|..+++++.+.+..| +...+..+..++...|++++|..+
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344444444455555555555555544422223 233344444555555555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ .+.|.+.++.+.+.
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHH
Confidence 55555431 1224444555555555555555555555542 22234444555555555555 55555555555555
Q ss_pred CCCCC
Q 046312 432 EPRGS 436 (514)
Q Consensus 432 ~p~~~ 436 (514)
.|+++
T Consensus 239 ~p~~~ 243 (252)
T 2ho1_A 239 YPGSL 243 (252)
T ss_dssp CTTSH
T ss_pred CCCCH
Confidence 55543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.3e-13 Score=120.54 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333344444444444444443332 234445555555556666666666666655532 23344555555666666
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+..++..+...+...|+ .+.|.
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~ 213 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKAL 213 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHH
Confidence 6666666666666553 12234555566666666666666666666653 22345566666666666666 67777
Q ss_pred HHHHHHHhcCCCCCchHHHHHH
Q 046312 423 EVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
..++.+.+..|+++.++..+..
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHccCcchHHHHHHHHH
Confidence 7777777766666555544433
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=5.9e-12 Score=114.78 Aligned_cols=224 Identities=8% Similarity=-0.087 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCARLLFSRMEE-INVWTWSAMI 303 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 303 (514)
+..++..+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55677788888999999999999999999843 56778889999999 9999999999998875 4778888999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 304 LGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999974 3 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 376 ILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI----HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 376 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
.|.. .+++++|...|++.....+...+..+...+.. .++ +++|...++++.+.+| +.++..++.+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN---FKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888 99999999999988633467788888888988 888 9999999999999876 567889999999
Q ss_pred h----cCCHHHHHHHHHHHHhCCC
Q 046312 448 E----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 448 ~----~g~~~~A~~~~~~m~~~~~ 467 (514)
+ .|++++|.+.+++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 9 9999999999999987664
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.3e-12 Score=117.40 Aligned_cols=198 Identities=10% Similarity=-0.012 Sum_probs=169.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45666777777888888888888877664 356788888899999999999999999998753 34577888889999
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
...|++++|..+++++.. .+..| +...+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|+ +
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE---Y 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---H
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC---H
Confidence 999999999999999986 23455 46778889999999999999999999885 33468889999999999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+.|...++.+.+..|.+...+..++.+|.+.|++++|.++++++.+...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999888999999999999999999999999987543
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3.1e-13 Score=131.15 Aligned_cols=259 Identities=10% Similarity=-0.030 Sum_probs=146.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhHHHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDE----TTMLVVLSACTELGNLSLGKWVHLQLIER----G-TVLNCQLGTALI 272 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li 272 (514)
...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 344445555555555555554432 1111 23444444455555555555555544332 1 111234445555
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---------CCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC-
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---------INVWTWSAMILGLAQHGY-----------------AEEALELFSNMKNS- 325 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~- 325 (514)
..|...|++++|...|++..+ ....++..+...|...|+ +++|...+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 555556666666555555432 112355556666666666 66666666655431
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---
Q 046312 326 ---SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP--- 394 (514)
Q Consensus 326 ---g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 394 (514)
+-.+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1111 1235556666677777777777777766643111111 2256667777777777777777776653
Q ss_pred -CCC----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 395 -FQP----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 395 -~~p----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
... ...++..+...+...|+ +++|...++.+.++.+.. ..++..++.+|.+.|++++|.+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 14566667777777777 777777777777654322 2367788888888888888888888765
Q ss_pred h
Q 046312 464 N 464 (514)
Q Consensus 464 ~ 464 (514)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=4.1e-12 Score=111.79 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 297 WTWSAMILGLAQH-GYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 297 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
..+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 154 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHH
Confidence 3444444444555 555555555555544212222 333444444555555555555555555442 111244444455
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQ-PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~-p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
..+.+.|++++|.+.++++. .+ .+...+..+...+...|+ .+.+...++.+.+..|+++
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 55555555555555555443 12 234444444444455555 5555555555555555544
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=9.7e-13 Score=127.22 Aligned_cols=269 Identities=9% Similarity=-0.032 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHhhccC---CCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HH
Q 046312 164 VYTNNNLVRFYGSCRRKRDACKVFDDMC---ERS----VVSWNVIITVCVENLWLGEAVGYFVKMKDL----GFEPD-ET 231 (514)
Q Consensus 164 ~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~ 231 (514)
...+......+...|++++|...|++.. +.+ ...|..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3344555666667777777777776652 122 235666666667777777777776665432 11111 33
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHH
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERGTV-----LNCQLGTALIDMYAKCGA--------------------VGCARL 286 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~ 286 (514)
++..+...+...|++++|...+++..+.... ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555556666666666666666665543110 012355555566666666 566655
Q ss_pred HHHhcCc-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHH
Q 046312 287 LFSRMEE-----I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----YVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 287 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
.+++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5554432 1 123455555555566666666666655543210 011 1244455555555666666666
Q ss_pred HHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCCCcchH
Q 046312 353 YFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP----FQPN----PIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 353 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
.+++..+...-.++ ..++..+...|.+.|++++|...+++.. ..++ ..++..+...+...|+ +++
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~ 325 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN---HDQ 325 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---HHH
Confidence 55555432110111 3344455555555566666665555543 1122 3344455555555555 555
Q ss_pred HHHHHHHHHhcCCCC
Q 046312 421 GNEVRRRLLELEPRG 435 (514)
Q Consensus 421 a~~~~~~~~~~~p~~ 435 (514)
|.+.++.+.++.+..
T Consensus 326 A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 326 AMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=2.8e-12 Score=112.87 Aligned_cols=198 Identities=11% Similarity=-0.000 Sum_probs=167.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777777788888888888877654 356788888889999999999999999998753 3457788889999
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCC
Q 046312 341 CNHA-GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 341 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~ 416 (514)
+... |++++|..+++++.+ .+..|+ ...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-- 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--
Confidence 9999 999999999999986 234444 6778889999999999999999999885 33458889999999999999
Q ss_pred cchHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 417 QDGVGNEVRRRLLELEP-RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+++|...++.+.+..| .+...+..++..+...|+.++|..+++.+....
T Consensus 163 -~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 -LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp -HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888888899999999999999999999987644
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5.2e-13 Score=119.24 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=157.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777788888899998888888764 467888889999999999999999999998853 345778888899
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 174 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--- 174 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---
Confidence 9999999999999999998752 3457788889999999999999999999885 44568889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
++.|...++.+.+..|+++.++..++.+|.+.|++++|.+.++++.+...
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999999987543
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=1.9e-12 Score=123.15 Aligned_cols=248 Identities=11% Similarity=0.050 Sum_probs=162.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN-LSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
...|+.+...+.+.|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++++++.... +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3455666666666677777777777766653 2345566666666666665 77777777777666533 5666666777
Q ss_pred HHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH-AGMVED 349 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~ 349 (514)
++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777776664 356677777777777777777877777777743 2245666667666766 454455
Q ss_pred H-----HHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCC-----
Q 046312 350 G-----YRYFHEMEHVHGIKPM-RIHYHTMADILARAG--HLKEAYTFIMNMPFQP-NPIVLRALLSASSIHDAK----- 415 (514)
Q Consensus 350 a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----- 415 (514)
| ...+++.... .|+ ...|..+...+.+.| ++++|.+.+.++...| +...+..+...+...++.
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 4667776653 444 556777777777766 5777777777665333 456677777777765410
Q ss_pred C-cchHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 046312 416 Y-QDGVGNEVRRRL-LELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 416 ~-~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 448 (514)
. ..++|.++++.+ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 0 147788888888 78888777777766665543
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.3e-12 Score=122.63 Aligned_cols=262 Identities=10% Similarity=0.013 Sum_probs=176.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHH
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPD----ETTMLVVLSACTELGNLSLGKWVHLQLIER----GTV-LNCQLGTA 270 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 270 (514)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34455666666666666666666642 112 245555666666667777776666665433 111 12445666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGY--------------------AEEALELFSN 321 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~ 321 (514)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777766543 12 2366667777777777 7888877777
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 322 MKNS----SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 322 m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
.... +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11111 345667777888888999988888887653111111 33677788888899999999888887
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHH
Q 046312 393 MP----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNV 458 (514)
Q Consensus 393 ~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 458 (514)
.. ..++ ..++..+...+...|+ +++|...++.+.++.+.. ..++..++.+|.+.|++++|...
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 63 1122 4667778888899999 999999998887765432 23677899999999999999999
Q ss_pred HHHHHhC
Q 046312 459 RRFMKNV 465 (514)
Q Consensus 459 ~~~m~~~ 465 (514)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.5e-11 Score=117.02 Aligned_cols=226 Identities=9% Similarity=0.033 Sum_probs=128.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-chHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG-LNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
..|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..++++++.. +-+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456667777777777777777777776642 2234466667777777775 777777777777664 3345566666666
Q ss_pred HHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHH
Q 046312 174 YGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE-LGNLSLG 249 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a 249 (514)
+...|++++|...|+++ ...+..+|..+..++.+.|++++|+..|+++++.. +-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666655 22345556666666666666666666666665543 2244455555555544 3333444
Q ss_pred -----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHH
Q 046312 250 -----KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG--YAEEALELFSNM 322 (514)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m 322 (514)
...++..++... .+...|+.+...+...| ++++|++.+.++
T Consensus 255 ~~~~el~~~~~Al~l~P--------------------------------~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVP--------------------------------HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 233333333321 23445555555555555 456666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH
Q 046312 323 KNSSISPNYVTFLGVLCACNHAG---------MVEDGYRYFHEM 357 (514)
Q Consensus 323 ~~~g~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~ 357 (514)
+. -+.+...+..+..+|.+.| ..++|..+++++
T Consensus 303 -~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 303 -QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp -TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 21 2233445555556665542 246666666666
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.1e-12 Score=127.25 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCCchHHHHHHHHHHH
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-----FTYPFVLKACAEISGLNEGMQVQANVTK 157 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 157 (514)
.+...+...|++++|+..|+++.+. .|+. ..|..+...+...|++++|...+++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666666666666666554 2222 2455555555566666666666655543
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.8e-12 Score=123.91 Aligned_cols=289 Identities=10% Similarity=-0.060 Sum_probs=162.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CCcchHHHH
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-----FTYPFVLKACAEISGLNEGMQVQANVTKSGLD-SDVYTNNNL 170 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 170 (514)
+......+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++....-. .+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 83 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ------ 83 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc------
Confidence 444455555666666666666666554 2221 24445555555566666666665554332100 000
Q ss_pred HHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGF-EPD----ETTMLVVLSACTELGN 245 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~ 245 (514)
.....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 84 ---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 84 ---------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 00122334444444445555555544444433200 001 2244445555555555
Q ss_pred --------------------hHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC
Q 046312 246 --------------------LSLGKWVHLQLIER----GT-VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----IN 295 (514)
Q Consensus 246 --------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~ 295 (514)
+++|...++...+. +. .....++..+...|...|++++|...+++..+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 55555555544332 11 11234566667777777777777777776653 12
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc
Q 046312 296 ----VWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 296 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 366 (514)
..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..+...-..+
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 236777788888888888888888887652 11111 456777788888899999999998887754211121
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-----C--CC-CHHHHHHHHHHHHhcCC
Q 046312 367 ----RIHYHTMADILARAGHLKEAYTFIMNMP-----F--QP-NPIVLRALLSASSIHDA 414 (514)
Q Consensus 367 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~--~p-~~~~~~~l~~~~~~~~~ 414 (514)
..++..+...|.+.|++++|.+.+++.. . .+ ...++..+...+...|+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 4567788888999999999999888763 1 11 13444455555555554
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=3.6e-12 Score=119.52 Aligned_cols=127 Identities=10% Similarity=-0.053 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----YV 332 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ 332 (514)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+... ..+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444455555555555555555554432 11 12445555555566666666666555543100 001 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
++..+...+...|++++|...+++..+...-.. ...++..+...|.+.|++++|...++++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555555443210000 1224444555555555555555555543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.5e-11 Score=104.67 Aligned_cols=166 Identities=8% Similarity=0.008 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45677778888888888888888888887743 234667777888888888888888888888764 133355666777
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
..+...++++.|.+.+.+.. .+.+...+..+...+...|+ +++|.+.++++.+.+|.++.++..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 77888888888888888775 34467778888888899999 99999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 046312 453 EKVSNVRRFMKNVG 466 (514)
Q Consensus 453 ~~A~~~~~~m~~~~ 466 (514)
++|.+.|++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.1e-11 Score=119.14 Aligned_cols=195 Identities=14% Similarity=0.008 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE-----I-----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----Y 331 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~ 331 (514)
++..+...|...|++++|...+++..+ + ...+++.+...|...|++++|...+++..+... .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444444555555555555554444332 1 123455555666666666666666666554210 011 1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-HH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVH---GI-KPMRIHYHTMADILARAGHLKEAYTFIMNMP------FQPN-PI 400 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~-~~ 400 (514)
.++..+..+|...|++++|...+++..+.. +. +....++..+...|.+.|++++|.+.+++.. ..|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666666677777776666665410 11 1224456666666777777777777666653 1111 12
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..+...+...|+ .+...+++..+.+.+ |.....+..++.+|...|++++|..++++..+
T Consensus 305 ~~~~l~~~~~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPD---EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445555555555 444444444444442 22233566788888888888888888887763
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=2.8e-12 Score=126.55 Aligned_cols=191 Identities=12% Similarity=0.001 Sum_probs=153.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAV-GCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455555566666666666 666666665543 34667788888888888888888888888874 466777888888
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc--------CCHHHHHHHHHhCC-CCC---
Q 046312 340 ACNHA---------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA--------GHLKEAYTFIMNMP-FQP--- 397 (514)
Q Consensus 340 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~-~~p--- 397 (514)
++... |++++|...+++..+. .| +...|..+..+|... |++++|.+.|+++. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 88888 9999999999998875 44 467788888888888 88999999998886 445
Q ss_pred -CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 398 -NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 398 -~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+...|..+...+...|+ +++|.+.++.+.+++|+++.++..++.++...|++++|.+.++++
T Consensus 256 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999 999999999999999999888999999999999999998765543
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=1.2e-10 Score=118.27 Aligned_cols=428 Identities=7% Similarity=-0.034 Sum_probs=245.2
Q ss_pred HHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC---chHHHHHHHHHHH
Q 046312 48 HAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR---PREAVWVFIDMKR 122 (514)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 122 (514)
++.-+... +-|...|..++..+. +.+.++.++.+|+++.. +.....|...+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~--~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHV--SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 458889999999988 88899999999988753 2344567777888888888 8999999999877
Q ss_pred cC-CCCCcchHHHHHHHHhccCCc--------hHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHc---------CCCHH
Q 046312 123 RG-IKPTEFTYPFVLKACAEISGL--------NEGMQVQANVTK-SGL-DSD-VYTNNNLVRFYGS---------CRRKR 181 (514)
Q Consensus 123 ~~-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~~---------~~~~~ 181 (514)
.. .+|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 137777777777766665554 234467766554 355 453 4577777765442 23466
Q ss_pred HHHHHhhccCCC---Ch-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 182 DACKVFDDMCER---SV-VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 182 ~A~~~~~~~~~~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.+..+|++...- +. .+|......-...+. ..+.+++.+. ..+++.|...+.++.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHH
Confidence 777888777431 11 223222211111011 0111111110 011222222222221
Q ss_pred Hh--CCC---------------C--------chhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 258 ER--GTV---------------L--------NCQLGTALIDMYAKCG-------AVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 258 ~~--~~~---------------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
.. ++. | ....|...+..--..+ ..+.+..+|++... .+...|...
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~y 349 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNM 349 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 11 100 0 0123333333322221 12234455655543 355677777
Q ss_pred HHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--------CCC--------
Q 046312 303 ILGLAQHGYAEEAL-ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--------IKP-------- 365 (514)
Q Consensus 303 i~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~p-------- 365 (514)
+..+...|+.++|. .+|++.... .+.+...+...+......|+++.|..+|+.+..... -.|
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 77777777777775 788777763 233444455566667777888888888887775310 013
Q ss_pred ----chHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C--CHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 366 ----MRIHYHTMADILARAGHLKEAYTFIMNMPFQ-P--NPIVLRALLSASSI-HDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 366 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~~~~~~~l~~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
...+|...++...+.|..+.|..+|.++... | ....|...+..-.. .++ .+.|..+++.+.+..|+++.
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d---~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD---TKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHHHTTCHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHCCCchH
Confidence 1235666677667777788888888776411 1 22233222211112 344 77788888888887777776
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK-MKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
.+...+......|+.+.|..+|++......++ .....| ..++.-...+|..+.+..+.+++.+..++
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw-------~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF-------QKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH-------HHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66677777777788888888888776654421 222334 34455566777777888888887776654
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=3.9e-09 Score=107.21 Aligned_cols=398 Identities=8% Similarity=-0.013 Sum_probs=271.7
Q ss_pred hhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCC---hHHHHHHHcccCC-C---CCccc
Q 046312 27 KARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKN---LTYARSILCNYVN-D---SVPIP 96 (514)
Q Consensus 27 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~---~~~A~~~~~~~~~-~---~~~~~ 96 (514)
+..+...++..+ +....++.+++.+... ++.....|...+..-. +.|+ ++.+..+|++... . +++..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~--~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF--DKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH--TC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH--hhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 334444444443 5678888999988876 5677889999999888 8888 9999999998764 3 67777
Q ss_pred HHHHHHHHHhCCCc--------hHHHHHHHHHHH-cCC-CCCc-chHHHHHHHHhc---------cCCchHHHHHHHHHH
Q 046312 97 WNNLIRGYAWSDRP--------REAVWVFIDMKR-RGI-KPTE-FTYPFVLKACAE---------ISGLNEGMQVQANVT 156 (514)
Q Consensus 97 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 156 (514)
|...+....+.++. +...++|+.... .|. .|+. ..|...+..... .++++.+.++|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665554 334578887654 465 5544 456666655432 345678888998887
Q ss_pred HhCCCCC--cchHHHHHHHHHc-------------CCCHHHHHHHhhcc-------C----C----------C--C----
Q 046312 157 KSGLDSD--VYTNNNLVRFYGS-------------CRRKRDACKVFDDM-------C----E----------R--S---- 194 (514)
Q Consensus 157 ~~~~~~~--~~~~~~li~~~~~-------------~~~~~~A~~~~~~~-------~----~----------~--~---- 194 (514)
.. +.. ..+|......-.. ..+++.|...+.++ . . | +
T Consensus 222 ~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 222 CQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred hC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 42 222 1233211111100 11233344444331 1 0 0 0
Q ss_pred --hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCc
Q 046312 195 --VVSWNVIITVCVENL-------WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGK-WVHLQLIERGTVLN 264 (514)
Q Consensus 195 --~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 264 (514)
...|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++...... +.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCC
Confidence 134555555433322 123456778888776 3446777777788888889999996 9999998754 446
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------------CC------------HHHHHHHHHHHHHcCChHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE-------------IN------------VWTWSAMILGLAQHGYAEEALELF 319 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~ 319 (514)
...+..++....+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67778889999999999999999998764 21 236888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 046312 320 SNMKNSSISPNYVTFLGVLCACNH-AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP 397 (514)
Q Consensus 320 ~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 397 (514)
.+.++.-.......|...+..-.+ .++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++.. ..|
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999886111223333332222223 356899999999999864 3445667788888888999999999999986 333
Q ss_pred ----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 398 ----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 398 ----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
....|..++.--...|+ .+.+..+.+++.+..|+++
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 34778888888899999 9999999999999999864
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.9e-12 Score=118.93 Aligned_cols=242 Identities=12% Similarity=0.061 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDL-------GFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER------GT 261 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~ 261 (514)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887763 12233456666777777777888877777776654 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046312 262 -VLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLC 339 (514)
Q Consensus 262 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 339 (514)
.....++..+...|...|++++|...|++..+.. +.... +-.| ....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------------~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------------EKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------------HHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------------HHhcC-CCChHHHHHHHHHHH
Confidence 1223445555555556666666555555443200 00000 1111 1223334444
Q ss_pred HHhccCcHHHHHHHHHHHHHhh-----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-----
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVH-----GIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP----------FQPN----- 398 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~----- 398 (514)
.+...|++++|..+++++.+.. +..| ...++..+...|.+.|++++|.+.++++. ..+.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 4444445554444444444320 0011 12334444455555555555555554432 0000
Q ss_pred --HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 399 --PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 399 --~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...+..+...+...+. +..+...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTS---FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CC---SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHH---HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111112222233334 55555566666666666667788888999999999999988887764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=4.7e-11 Score=114.59 Aligned_cols=228 Identities=7% Similarity=-0.038 Sum_probs=149.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC------CchhHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDL----GFEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTV------LNCQLGTA 270 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~ 270 (514)
...+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+++..+.... ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666666542 1111 1245555666666666666666666665543111 11345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNS----SI-SPNYVTFLG 336 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 336 (514)
+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777777777777777776653 11 246777888888888888888888887762 22 223556777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCC--CC-chHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGI--KP-MRIHYHTMADILARAGH---LKEAYTFIMNMPFQPN-PIVLRALLSAS 409 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 409 (514)
+..++...|++++|...+++..+...- .| ....+..+...+...|+ .++|+.++++....|+ ...+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888888888888888888887653111 11 12235567777778888 8888888888863333 35667788888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
...|+ +++|...++++.++.
T Consensus 350 ~~~g~---~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKN---FQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTC---HHHHHHHHHHHHHHH
T ss_pred HHCCC---HHHHHHHHHHHHHHH
Confidence 88898 888888888887754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=5.2e-10 Score=103.78 Aligned_cols=219 Identities=8% Similarity=-0.047 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACT-------ELGNL-------SLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
++|..+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+-+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666676666642 334455555555443 34665 6777777777763112345567777777777
Q ss_pred cCCHHHHHHHHHhcCc--C-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE--I-NVW-TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC-NHAGMVEDGYR 352 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 352 (514)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777664 3 233 67777777777888888888888877643 22333343332222 23578888888
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046312 353 YFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQP--NPIVLRALLSASSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 353 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~ 426 (514)
+|++..+.+ +-+...|..++..+.+.|+.++|..+|+++. ..| ....|..++......|+ .+.+..+++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~---~~~a~~~~~ 265 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEK 265 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 888877642 2346677777777778888888888887774 133 35667777777777788 888888888
Q ss_pred HHHhcCCCCCc
Q 046312 427 RLLELEPRGSQ 437 (514)
Q Consensus 427 ~~~~~~p~~~~ 437 (514)
.+.+..|++..
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 88888877553
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=4.2e-10 Score=104.35 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPN--YVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~ 351 (514)
.|++++|..+|++..+ .+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++......|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555543 245566666666667777777777777776642 3442 445666666666677777777
Q ss_pred HHHHHHHHh
Q 046312 352 RYFHEMEHV 360 (514)
Q Consensus 352 ~~~~~~~~~ 360 (514)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=2.2e-09 Score=102.39 Aligned_cols=260 Identities=11% Similarity=-0.057 Sum_probs=166.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCC---C--chhHHHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDET----TMLVVLSACTELGNLSLGKWVHLQLIERGTV---L--NCQLGTALI 272 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~li 272 (514)
...+...|++++|...+++........+.. .+..+...+...|++++|...+++..+.... + ...++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777666543112221 3444455566677777777777666543111 1 122345566
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE-------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS--P--NYVTFLGV 337 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 337 (514)
..+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677777888888777776543 1 1234556677788888888888888887763211 1 23456677
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-----TMADILARAGHLKEAYTFIMNMP-FQPN-----PIVLRALL 406 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~ 406 (514)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788888999999998888775421111111111 23344678899999999998875 2221 23456777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+...|+ .++|...++.+.+..+.. ...+..++.++...|+.++|...+++...
T Consensus 261 ~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888898 888888888876654321 12566788889999999999999988764
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=8.8e-11 Score=99.86 Aligned_cols=166 Identities=10% Similarity=-0.022 Sum_probs=106.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+..+|..+...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 445566666666666666666666666553 345566666666777777777777777666542 2234455555566
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
+...++++.+...+.+.... .+.+...+..+...|.+.|++++|++.|++.. .+.+..+|..+...+...|+ +
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---R 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---H
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---H
Confidence 66677777777777776653 12235566666777777777777777777664 23355667777777777777 7
Q ss_pred hHHHHHHHHHHhcCCCC
Q 046312 419 GVGNEVRRRLLELEPRG 435 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (514)
++|.+.++++.+++|++
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 77777777777776654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=113.71 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMCE--------R---SVVSWNVIITVCVENLWLGEAVGYFVKMKDL------G 225 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 225 (514)
+..++..+...+...|++++|..+++++.+ . ....+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988843 1 2457888899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHH
Q 046312 226 FEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERG------TVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVW 297 (514)
Q Consensus 226 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 297 (514)
-.| ...++..+...+...|++++|...++++.+.. ..| ...++..+...|...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 223 35678888999999999999999999887651 111 2334455555555555555555555444321
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhh------CCCCc----
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVH------GIKPM---- 366 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~---- 366 (514)
++... .+..|. ..++..+..++...|++++|..+++++.+.. ...+.
T Consensus 183 ---------------------~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 183 ---------------------YQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp ---------------------HHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred ---------------------HHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 00000 011111 2234444445555555555555555444310 00111
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 367 ---RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 367 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
...+..+...+...+.+.+|...++... ..| +..++..+...|...|+ +++|.+.++.+.++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence 1112222223334444555555555554 222 34566677777777777 77777777777776553
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=4.5e-11 Score=117.92 Aligned_cols=212 Identities=11% Similarity=-0.077 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc-hHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL-NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
++++++.+++.... .+.+...+..+...+...|++ ++|++.+++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555544332 122344555555666666666 66666666665553 2234444445555555555555544444
Q ss_pred ccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHh
Q 046312 189 DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL---------GNLSLGKWVHLQLIER 259 (514)
Q Consensus 189 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~ 259 (514)
+. .+. .|+...+..+...+... |++++|...+++..+.
T Consensus 162 ~a-------------------------------l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 162 GA-------------------------------LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HH-------------------------------HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------------------------------Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 44 332 23333344444444444 4444444444444444
Q ss_pred CCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 260 GTVLNCQLGTALIDMYAKC--------GAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.. .+...+..+..+|... |++++|+..|++..+ | +...|..+..+|...|++++|...|++..+.
T Consensus 209 ~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 209 DV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 1334444444444444 455555555554432 2 4455555566666666666666666665553
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
. +-+...+..+..++...|++++|...+.++.
T Consensus 288 ~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 288 D-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 1223445555555566666666665554443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.5e-10 Score=110.79 Aligned_cols=221 Identities=8% Similarity=-0.014 Sum_probs=123.4
Q ss_pred hccCChHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----C-----CHHHHHHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGT--V---LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----I-----NVWTWSAMILG 305 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 305 (514)
...|++++|...+++..+... . ....++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555544443210 0 0123444555555555555555555554432 1 12355566666
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CCCCchHHHHHHHHHH
Q 046312 306 LAQHGYAEEALELFSNMKNS----SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH---GIKPMRIHYHTMADIL 377 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~ 377 (514)
|...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +.+....++..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77777777777777666542 1111 12345666677777777777777777766511 1122255666777777
Q ss_pred HhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC--CCCCchHHHHHHHHHh
Q 046312 378 ARAGHLKEAYTFIMNMP------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE--PRGSQNLVIVANKYAE 448 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 448 (514)
.+.|++++|...+++.. ..|. ...+..+...+...++ .+...+++..+.+.+ |.....+..++..|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD---ERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 77888888877777653 1222 2334444444555555 344444444444432 2223456688888999
Q ss_pred cCCHHHHHHHHHHHHh
Q 046312 449 VGMWEKVSNVRRFMKN 464 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~ 464 (514)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888887753
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2e-10 Score=97.42 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554431 223445555555566666666666666666543 1223455556666666
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 379 RAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
..|++++|.+.++++. .+.+...+..+...+...|+ +++|...++.+.+..|.++..+..++.+|...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653 33455666666677777777 777777777777777777777777777777778888887
Q ss_pred HHHHHHHhC
Q 046312 457 NVRRFMKNV 465 (514)
Q Consensus 457 ~~~~~m~~~ 465 (514)
..+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776643
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.5e-10 Score=118.85 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTM 373 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 373 (514)
..+|+.+...|.+.|++++|+..|++.++. .|+ ..++..+..+|.+.|++++|...|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 456777777777888888888888877764 344 566777777888888888888888887764 454 6677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 374 ADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
..+|.+.|++++|++.|++.. ..| +...|..+...+...|+ +++|.+.++++.+++|+++.++..++.+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 888888888888888887775 344 56778888888888888 8888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 046312 452 WEKVSNVRRFMKN 464 (514)
Q Consensus 452 ~~~A~~~~~~m~~ 464 (514)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=3.5e-09 Score=101.00 Aligned_cols=222 Identities=9% Similarity=-0.032 Sum_probs=117.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CC----cchHHHH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEF-----TYPFVLKACAEISGLNEGMQVQANVTKSGLD-SD----VYTNNNL 170 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 170 (514)
...+...|++++|...+++..... +++.. .+..+...+...|+++.|...+++....... .+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566788888888888776643 22211 3445556667778888888887776553211 11 1224455
Q ss_pred HHHHHcCCCHHHHHHHhhccCC----------C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE----------R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE--P--DETTMLV 235 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~t~~~ 235 (514)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666677777777666665511 1 1224445556666667777777766666543211 1 1234555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHH
Q 046312 236 VLSACTELGNLSLGKWVHLQLIERGTVLNC-QLGT-----ALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAM 302 (514)
Q Consensus 236 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l 302 (514)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++...++. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 555566666666666666665543211111 1111 12233455566666666655554321 1123344
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 046312 303 ILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~ 323 (514)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.3e-09 Score=104.31 Aligned_cols=224 Identities=12% Similarity=0.096 Sum_probs=123.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CC-chhHHHHHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLG-FEPD----ETTMLVVLSACTELGNLSLGKWVHLQLIERGT-----VL-NCQLGTALI 272 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~li 272 (514)
.+...|++++|+..|++..+.. -.++ ..++..+...+...|+++.|...+++..+... .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445566666666665554421 0111 23444555555566666666665555544210 10 133455566
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKN-----SSISPNYVTFLGVL 338 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll 338 (514)
.+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 666666666666666655543 11 23555666666677777777777766655 22 12245566666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCC--C-chHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIK--P-MRIHYHTMADILARAGH---LKEAYTFIMNMPFQPN-PIVLRALLSASSI 411 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~ 411 (514)
.++.+.|++++|..++++..+...-. + ....+..+...+...|+ ..+|+..+++....|+ ...+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 66777777777777777766532111 1 12234444455555666 6677777766542222 2345556666777
Q ss_pred cCCCCcchHHHHHHHHHHhc
Q 046312 412 HDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~ 431 (514)
.|+ +++|...++++.+.
T Consensus 349 ~g~---~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCH---FEQAAAFYRKVLKA 365 (378)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHH
Confidence 777 77777776666543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=9e-10 Score=93.23 Aligned_cols=167 Identities=12% Similarity=-0.029 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566777888889999999999998875 357788888889999999999999999988753 34567788888889
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|+ ++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HH
Confidence 9999999999999998874 23456778888889999999999999998875 44467888889999999999 99
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 046312 420 VGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~ 437 (514)
.|...++.+.+..|++..
T Consensus 162 ~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 162 EALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHcCCCchh
Confidence 999999999988887653
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=1e-09 Score=96.74 Aligned_cols=204 Identities=7% Similarity=-0.033 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHH
Q 046312 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMIL 304 (514)
Q Consensus 228 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 304 (514)
.|...+......+...|++++|...|+..++....++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888889999999999999999887646777777788999999999999999988775 3 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPN-Y-------VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTM 373 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 373 (514)
.|...|++++|...+++..+. .|+ . ..|..+...+...|++++|...++++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 899999999999999998874 333 3 3466777778888999999999998874 3665 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 374 ADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
..+|...|+. .++++. ...+...|.... ....+. +++|...++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~---~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAA---FKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 233332 223444454443 233455 78899999999999999877666665543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=9e-10 Score=97.16 Aligned_cols=189 Identities=13% Similarity=0.013 Sum_probs=141.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGV 337 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (514)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3557778888889999999999999988764 56677777888889999999999999998874 344 5667788
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCc-h-------HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPM-R-------IHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRAL 405 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l 405 (514)
..++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|.+.|+++. ..|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 88889999999999999998875 333 3 457777788888999999999998876 5665 3556666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+... +...++.+..+.+.+...|.. ......|.+++|...+++..+..
T Consensus 160 ~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNN--------GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH--------HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--------HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 6666443 445567777777665444433 33445667899999999988754
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=5.4e-09 Score=95.99 Aligned_cols=189 Identities=17% Similarity=0.042 Sum_probs=101.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---C--chhHHHHHH
Q 046312 203 TVCVENLWLGEAVGYFVKMKDL----GFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTV---L--NCQLGTALI 272 (514)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~li 272 (514)
..|...|++++|...|.+..+. |-.++ ..+|..+..+|...|++++|...++..++.... + -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666555554432 21111 345555666666666666666666655443110 0 123555666
Q ss_pred HHHHhc-CCHHHHHHHHHhcCc--C---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHH
Q 046312 273 DMYAKC-GAVGCARLLFSRMEE--I---N----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY------VTFLG 336 (514)
Q Consensus 273 ~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ 336 (514)
..|... |++++|+..|++..+ | + ..++..+...+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 777777766666553 1 1 235666667777777777777777777664322111 13455
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCchH------HHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI------HYHTMADILA--RAGHLKEAYTFIMNMP 394 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~ 394 (514)
+..++...|+++.|...+++..+ +.|+.. .+..++..+. ..+++++|+..|+++.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55666667777777777776652 333311 2333444443 3455777777776664
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=1e-08 Score=92.68 Aligned_cols=238 Identities=8% Similarity=-0.039 Sum_probs=120.8
Q ss_pred HHcCCCHHHHHHHhhccCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046312 174 YGSCRRKRDACKVFDDMCERSV-VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWV 252 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 252 (514)
..-.|.+..+..-..++.+.+. ..-.-+.++|+..|+++... .-.|....+..+...+. .+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~~-~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFLD-TK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHHT-TT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHhc-cc----HHHH
Confidence 3456777776665555432222 22223346666666665321 12333333333333332 11 4455
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
+++..+.+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55555443 23334444666666666777777766666532 23455556666666667777777777666653
Q ss_pred CC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C--
Q 046312 328 SP-----NYVTFLGVLCAC--NHAG--MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F-- 395 (514)
Q Consensus 328 ~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-- 395 (514)
.| +..+...+..++ ...| ++..|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+. .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 244444444442 2223 666666666666543 3432222233335666666666666665442 1
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 396 --------QP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 396 --------~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.| |..++..++......|+ .+.+.++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 13 34444333333333333 35666666666666654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.2e-09 Score=99.35 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----CCC
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS------SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-----GIK 364 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 364 (514)
.++..+...|...|++++|...+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555666666666666555442 1112 23445566666666777777777666665420 012
Q ss_pred C-chHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 365 P-MRIHYHTMADILARAGHLKEAYTFIMNMP----------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 365 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
| ...++..+...|.+.|++++|...++++. ..+. ...+..+.......+..........+........
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 24456666777777777777777776552 1121 1223223323332222111111111111112222
Q ss_pred ---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 433 ---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 433 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|....++..++.+|.+.|++++|..++++..+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344677899999999999999999998764
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=2.6e-09 Score=109.82 Aligned_cols=161 Identities=9% Similarity=-0.015 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT-EFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
+.+|+.|...+.+.|++++|++.|++..+. .|+ ..+|..+..++.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355667777777777777777777776664 333 3466667777777777777777777776663 334566777777
Q ss_pred HHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 173 FYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
+|.+.|++++|.+.|++. .+.+..+|+.+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777666 22355667777777777777777777777776653 22456667777777777777777
Q ss_pred HHHHHHHHH
Q 046312 250 KWVHLQLIE 258 (514)
Q Consensus 250 ~~~~~~~~~ 258 (514)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=8.7e-10 Score=100.39 Aligned_cols=154 Identities=13% Similarity=0.065 Sum_probs=89.8
Q ss_pred hCCCchHHHHHHHHHHHc-------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh------CCCC-CcchHHHHH
Q 046312 106 WSDRPREAVWVFIDMKRR-------GIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS------GLDS-DVYTNNNLV 171 (514)
Q Consensus 106 ~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li 171 (514)
..|++++|+.+|++..+. +.+....++..+...+...|++++|...++++.+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345666666665554431 11112345666666777777777777777766544 1112 234566666
Q ss_pred HHHHcCCCHHHHHHHhhccCC-----------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-CHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCE-----------RSVVSWNVIITVCVENLWLGEAVGYFVKMKDL------GFEP-DETTM 233 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~ 233 (514)
..|...|++++|...+++... ....++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 667777777777666665511 12345666666677777777777777766553 1122 23456
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
..+...+...|++++|...++++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666677777777777777666553
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=4.8e-09 Score=96.35 Aligned_cols=201 Identities=8% Similarity=-0.052 Sum_probs=139.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-----C----HHHHHHHHHHHHHcCChHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-----N----VWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a 315 (514)
++++|...+++. ...|...|++++|...|.+..+. + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777766665 34567788888888888766531 1 45778888888888999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHH
Q 046312 316 LELFSNMKNSSI---SPN--YVTFLGVLCACNHA-GMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKE 385 (514)
Q Consensus 316 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 385 (514)
+..+++..+... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888765210 111 34677788888885 9999999999988764211111 3567888889999999999
Q ss_pred HHHHHHhCC-CCCCH--------HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hc
Q 046312 386 AYTFIMNMP-FQPNP--------IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN-----LVIVANKYA--EV 449 (514)
Q Consensus 386 A~~~~~~~~-~~p~~--------~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 449 (514)
|...|+++. ..|+. ..|..+...+...|+ ++.|...++.+.++.|+.... +..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999998874 23321 256677778888999 999999999999988875543 335666665 45
Q ss_pred CCHHHHHHHHHHHH
Q 046312 450 GMWEKVSNVRRFMK 463 (514)
Q Consensus 450 g~~~~A~~~~~~m~ 463 (514)
+++++|...|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 77888888886653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=4.3e-08 Score=88.58 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=100.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 214 AVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGT-VLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 214 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
|+..|++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666555543 44455555666666667777777777766655443 2345566666677777777777777776665
Q ss_pred c--C-----CHHHHHHHHHHH--HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 293 E--I-----NVWTWSAMILGL--AQHG--YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 293 ~--~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+ | +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++...|++++|...++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 3 134444454442 2223 667777777776543 3442333333446666677777777766554321
Q ss_pred C--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 046312 362 G--------IKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP 399 (514)
Q Consensus 362 ~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 399 (514)
. -+-+..+...+|......|+ +|.++++++. ..|+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 0 02244555444444444555 6666666665 44543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.8e-08 Score=80.02 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=76.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
+..+...+...|++++|..+++++.+. . +.+...+..+...+...|++++|...++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555543 1 2234445555555555666666666665553 22345555666666666
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.|+ ++.|.+.++.+.+..|.+...+..++.+|.+.|++++|...++++...
T Consensus 82 ~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGD---YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666 777777777776767766666777777777777777777777776543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=4.5e-08 Score=88.13 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-N---VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN-YVTFL 335 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 335 (514)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555566666677777777777776654 2 2 45566666667777777777777777666421 111 33445
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 046312 336 GVLCACNH--------AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALL 406 (514)
Q Consensus 336 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 406 (514)
.+..++.. .|++++|...|+++.+. .|+. .....+.......++. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 66777777777776654 2331 1221111111000000 01135567
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEV----------GMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 466 (514)
..+...|+ ++.|...++.+.+..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERREL---YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccC---HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 78899999 9999999999999999854 4678999999877 89999999999998754
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=3.2e-08 Score=86.92 Aligned_cols=183 Identities=9% Similarity=-0.022 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE--IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTFLG 336 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 336 (514)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777788888888888887764 32 246667777888888888888888887764321111 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 046312 337 VLCACNH------------------AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARAGHLKEAYTFIMNMPFQP 397 (514)
Q Consensus 337 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 397 (514)
+..++.. .|++++|...|+++.+. .|+. ..+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 3444433 35566666666666543 3332 1111111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
......+...+...|+ ++.|...++.+.+..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGA---WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0011245667888999 9999999999999999875 46889999999999999999999999877654
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=2.3e-08 Score=90.07 Aligned_cols=203 Identities=12% Similarity=0.014 Sum_probs=143.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC----HHH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN----VWT 298 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 298 (514)
+.+...+..+...+.+.|++++|...|+.+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456777788888999999999999999999875332 166788899999999999999999999875 31 456
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 299 WSAMILGLAQ--------HGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 299 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+..++.. .|++++|...|+++++. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3432 222111 111111110 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCCCcchHHHHHHHHHHhcCCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIH----------DAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+..+...|.+.|++++|...|+++. ..|+ ...+..+..++... |+ +++|...++.+.+..|+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC
Confidence 4556777888899999988888874 3333 35666677777765 66 88899999999999998
Q ss_pred CCch---HHHHHHHHHhcCCHH
Q 046312 435 GSQN---LVIVANKYAEVGMWE 453 (514)
Q Consensus 435 ~~~~---~~~l~~~~~~~g~~~ 453 (514)
++.+ ...+..++.+.|+++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhh
Confidence 7632 334444444444443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=5.9e-08 Score=76.89 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 4445555555566666666665555432 223444555555555556666666666665543 1 223444555555566
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 379 RAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+.|++++|.+.++++. .+.+...+..+...+...|+ .+.|...++.+.+..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 6666666666665553 22344555555566666666 66666666666555553
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=5.3e-09 Score=85.41 Aligned_cols=140 Identities=9% Similarity=-0.038 Sum_probs=103.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG 381 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 381 (514)
..+...|++++|+..++..... .|+ ...+..+...|.+.|++++|...|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444566777887777776542 333 334556777788888888888888888764 44 4677888888888888
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 382 HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNE-VRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
++++|...|++.. ..| +...+..+...+...|+ .+++.+ .++++.+++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888875 444 56778888888888888 765554 5688999999988888888888887775
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=1.2e-08 Score=93.31 Aligned_cols=174 Identities=11% Similarity=-0.041 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 282 GCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+...+.+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444444443444555555566666666666666666665532 223445555556666666666666666665532
Q ss_pred CCCCchHHHH-HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC--C
Q 046312 362 GIKPMRIHYH-TMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG--S 436 (514)
Q Consensus 362 ~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~ 436 (514)
.|+..... .....+.+.++.++|.+.+++.. .+.+...+..+...+...|+ +++|...+..+.+.+|++ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccc
Confidence 33332222 12222445555555666555553 22345556666666666666 666666666666666655 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
.++..++.+|...|+.++|...+++.
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45666666666666666666665544
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=9.2e-09 Score=86.55 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=53.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHH-HHhcCCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSA-SSIHDAK 415 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-~~~~~~~ 415 (514)
..+...|++++|...+++..+. .| +...+..+...+.+.|++++|...++++. ..|+...+..+... +...++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~- 89 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAA- 89 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcc-
Confidence 3344445555555555544432 22 23344444445555555555555555543 22322222111111 111112
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+...++.+.+.+|+++..+..++.++...|++++|...++++.+..
T Consensus 90 --~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 90 --ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp --SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 2224445555555555555555555555555555555555555554433
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.1e-08 Score=105.47 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=124.4
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc
Q 046312 241 TELGNLSLGKWVHLQLI--------ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQH 309 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 309 (514)
...|++++|...+++.. +.. +.+...+..+..+|.+.|++++|++.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777788888777776 322 33456677777777788888888888877764 3566777777777788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHH
Q 046312 310 GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (514)
|++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+. .|+ ...|..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777642 2235566677777777788877 7777777754 343 5567777777778888888888
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHhcCCCCCc
Q 046312 389 FIMNMP-FQPN-PIVLRALLSASSIHDAKYQ--DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 389 ~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~ 437 (514)
.|+++. ..|+ ...+..+..++...++... .+...++.+.+.++.+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 887775 5555 3455555555544332111 24455555555566665554
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=5.6e-08 Score=88.85 Aligned_cols=160 Identities=10% Similarity=-0.065 Sum_probs=121.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG-V 337 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l 337 (514)
+.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44566777788888899999999999998764 35678888888999999999999999888764 455443222 2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhc
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSIH 412 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~ 412 (514)
...+...++.+.|...+++.... .| +...+..+...|...|++++|.+.|.++. ..|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23355667777788888888765 44 46778888888999999999999998875 4443 56788888888888
Q ss_pred CCCCcchHHHHHHHHHH
Q 046312 413 DAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~ 429 (514)
|+ .+.+...+++..
T Consensus 269 g~---~~~a~~~~r~al 282 (287)
T 3qou_A 269 GT---GDALASXYRRQL 282 (287)
T ss_dssp CT---TCHHHHHHHHHH
T ss_pred CC---CCcHHHHHHHHH
Confidence 88 888877777654
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=2e-07 Score=91.75 Aligned_cols=374 Identities=8% Similarity=-0.052 Sum_probs=197.8
Q ss_pred CCC-ChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-chHHHHH
Q 046312 74 SSK-NLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG-LNEGMQV 151 (514)
Q Consensus 74 ~~g-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~ 151 (514)
+.| +++.|+.+|+++. ..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l------------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR------------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHH------------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHH------------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 345 3667777776654 11111 8899999999998874 5788888888877776663 4567778
Q ss_pred HHHHHHh-CCCC-CcchHHHHHHHHHc----CCCHHHHHHHhhccCC-C--Ch-hhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 152 QANVTKS-GLDS-DVYTNNNLVRFYGS----CRRKRDACKVFDDMCE-R--SV-VSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 152 ~~~~~~~-~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
|+..+.. |..+ +..+|...+..+.. .++++.+.++|++... | +. ..|...... .+..+...+..++.+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH
Confidence 8877664 4333 55677777765442 3567788888888733 2 11 122222111 1111112222222111
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc-
Q 046312 222 KDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG-------AVGCARLLFSRMEE- 293 (514)
Q Consensus 222 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~- 293 (514)
. +.+..|..+++.+...-...+...|...++.-...+ ..+.+..+|+++..
T Consensus 150 ~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 150 L---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred h---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 0 122223333333322100012234444443322210 02345566666554
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--------C
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--------I 363 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~ 363 (514)
.....|...+.-+.+.|+.++|..++++.... |....+......+.+.++ +++.+.+..- .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHHHTC---------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHHHHHhhccchhhh
Confidence 34566777777777788888888888888775 443322211111111111 1222222110 0
Q ss_pred CC---chHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 364 KP---MRIHYHTMADILARAGHLKEAYTFIMNMPFQP--NPIVLRALLSASS-IHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 364 ~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.+ ....|...+....+.|..+.|..+|+++. .| +...|......-. ..++ .+.|..+++.+.+..|+.+.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d---~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGS---RATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHCTTCHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHCCCCHH
Confidence 01 12456666666666777888888887773 22 2333332221111 2235 77888888888877777666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.+...++...+.|+.+.|..+|++... ....| ...+.-...+|..+.+-.++++....++
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw-------~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLEK------TSRMW-------DSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHH-------HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 666677777778888888888887621 11224 2333344556777777777877777665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=9e-08 Score=88.50 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=141.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456667777777665431 110 0 11135666666655543 3456666777777777
Q ss_pred HHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 046312 288 FSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSS---ISPN--YVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 288 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..+|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 666543 11 3467777778888888888888888766521 1121 3456777778877 999999988
Q ss_pred HHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCCCcchHH
Q 046312 354 FHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMNMP-F---QPN----PIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 354 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
|++..+...-.. ...++..+...|.+.|++++|+..|++.. . .++ ...+..+...+...|+ ++.|
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~A 214 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD---YVAA 214 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC---HHHH
Confidence 888775421111 14567788888899999999999888774 1 122 2355666667777788 9999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCHHHHHHH
Q 046312 422 NEVRRRLLELEPRGSQN-----LVIVANKYAEVGMWEKVSNV 458 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 458 (514)
...++++. +.|..... ...++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999988 88765433 33555555 56777666653
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=2.1e-07 Score=95.89 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=85.2
Q ss_pred HhCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 206 VENLWLGEAVGYFVKMK--------DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+... .+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 44555556655555554 221 22334455555555555666666655555555432 244455555555555
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
.|++++|++.|++..+ .+...|..+..++.+.|++++ +..|++..+.. +-+...+..+..++...|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666655555543 234455555555555555555 55555555432 123344555555555556666665555
Q ss_pred HHHHHhhCCCCc-hHHHHHHHHHHHh
Q 046312 355 HEMEHVHGIKPM-RIHYHTMADILAR 379 (514)
Q Consensus 355 ~~~~~~~~~~p~-~~~~~~li~~~~~ 379 (514)
+++.+ +.|+ ...+..+..++..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHc
Confidence 55542 2343 3344444444433
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=6e-06 Score=81.29 Aligned_cols=350 Identities=11% Similarity=-0.030 Sum_probs=208.9
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCC-chHHHHHHHHHHHc-CCCC-CcchHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDR-PREAVWVFIDMKRR-GIKP-TEFTYPFV 135 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~l 135 (514)
-.+|...+..+- .|+++.+..+|++... .|++..|...+....+.+. .+....+|+..... |..| +...|...
T Consensus 15 R~vyer~l~~~P---~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYM---SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 345555666655 3788888888888753 5677778777777666653 35566777776653 4333 33456666
Q ss_pred HHHHh----ccCCchHHHHHHHHHHHhCCCCCc--chHHHHHHHHH-------------cCCCHHHHHHHhhccC----C
Q 046312 136 LKACA----EISGLNEGMQVQANVTKSGLDSDV--YTNNNLVRFYG-------------SCRRKRDACKVFDDMC----E 192 (514)
Q Consensus 136 l~~~~----~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~-------------~~~~~~~A~~~~~~~~----~ 192 (514)
+..+. ..|+++.+.++|+.++.. ++.. ..|......-. ..+.+..|..+++.+. .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 65543 245677888888888763 2221 12221111100 0112223333333331 1
Q ss_pred CChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 046312 193 RSVVSWNVIITVCVENL--W-----LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 265 (514)
.+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 23446666555432221 1 345677888888753 455677777777788899999999999999988 3333
Q ss_pred hHHHHHHHHHHhcCCHHHH-HHHHHhcC------------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 266 QLGTALIDMYAKCGAVGCA-RLLFSRME------------EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
..+.. |....+.++. ..+.+... ......|...+..+.+.++.+.|..+|.+. +. ...+..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 33322 2221111111 11222111 012245666777777788899999999988 32 122333
Q ss_pred HHHHHHHHHh-ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046312 333 TFLGVLCACN-HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI 411 (514)
Q Consensus 333 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (514)
.|......-. ..++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|+++. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4432222111 234689999999999886432 24456667787788999999999999985 356778888877778
Q ss_pred cCCCCcchHHHHHHHHHHh
Q 046312 412 HDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~ 430 (514)
.|+ .+.+..++++..+
T Consensus 397 ~G~---~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGS---MELFRELVDQKMD 412 (493)
T ss_dssp HSC---HHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHH
Confidence 898 8888887777664
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=4.1e-07 Score=78.91 Aligned_cols=172 Identities=9% Similarity=-0.081 Sum_probs=121.6
Q ss_pred HHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHH
Q 046312 284 ARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG----MVEDGYRYFHEME 358 (514)
Q Consensus 284 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 358 (514)
|.+.|++..+ .++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 456666677777777788888888888877754 45556666666666 5 7888888888876
Q ss_pred HhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCCCcchHHHHHHH
Q 046312 359 HVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSI----HDAKYQDGVGNEVRR 426 (514)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~~~~a~~~~~ 426 (514)
+. -+...+..|...|.. .+++++|.+.|++.. ..|. ...+..|...|.. .++ .++|...++
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~ 153 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYFK 153 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHHH
Confidence 53 245566667777766 778888888888876 3332 6777777777776 566 888888888
Q ss_pred HHHhcCCCCCchHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 046312 427 RLLELEPRGSQNLVIVANKYAEV-G-----MWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 467 (514)
++.+. |.++.++..|+.+|... | +.++|...+++..+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887 44566788888888764 3 78999999988877664
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=2.4e-07 Score=93.65 Aligned_cols=159 Identities=9% Similarity=-0.037 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
.|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677777777777664 346778888888888999999999999888753 234677888888899999999999999
Q ss_pred HHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHH
Q 046312 355 HEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIH---DAKYQDGVGNEVRRRL 428 (514)
Q Consensus 355 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~~~~a~~~~~~~ 428 (514)
++..+. .| +...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+ .++|.+.++.+
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHH
Confidence 998875 34 46788888899999999999999998875 334577888888899998 77 99999999999
Q ss_pred HhcCCCCCchHHHHH
Q 046312 429 LELEPRGSQNLVIVA 443 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~ 443 (514)
.+.+|.+...+..+.
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998887777665
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=2.2e-07 Score=80.46 Aligned_cols=133 Identities=12% Similarity=0.012 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM 346 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 346 (514)
.+..+|.+.|++++|+..|++..+ .+...|..+...+...|++++|...|++.++.. +-+..++..+..+|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 355666666666666666666553 245566666666666677777777776666632 2234455555555544433
Q ss_pred --HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 046312 347 --VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALL 406 (514)
Q Consensus 347 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 406 (514)
.+.+...++... ...|....+.....++...|++++|...|++.. ..|+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 233344444332 222222233334445555667777777776654 556655444433
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=3e-07 Score=79.50 Aligned_cols=137 Identities=7% Similarity=0.023 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHH
Q 046312 300 SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILA 378 (514)
Q Consensus 300 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 378 (514)
..+..+|.+.|++++|+..|++.++.. +-+...+..+..++...|++++|...|+++.+. .|+ ...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 346777888888888888888887742 234566777778888888888888888888764 444 566777777765
Q ss_pred hcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 379 RAGH--LKEAYTFIMNMPFQPNP--IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 379 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
..|+ .+.+...++... .|+. ..+.....++...|+ +++|...++++.++.|+. .....+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~---~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTR---YEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 5543 345556666554 3333 233334555666777 888888888888888863 344444443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=8.5e-08 Score=97.01 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=117.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHH
Q 046312 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (514)
.|++++|...+++..+.. +-+...+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988742 234677888899999999999999999999853 554 778889999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCHHHHHHHHHHH
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV---GMWEKVSNVRRFM 462 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m 462 (514)
+.+++.. .+.+...+..+...+...|+ +++|.+.++.+.+.+|++..++..++.++... |++++|.+.+++.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999885 33467889999999999999 99999999999999999999999999999999 9999999999988
Q ss_pred HhCC
Q 046312 463 KNVG 466 (514)
Q Consensus 463 ~~~~ 466 (514)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7554
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.9e-07 Score=86.31 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=71.1
Q ss_pred HHHHcCCCHHHHHHHhhccCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC---CCCC--HHHHHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCE-----RS----VVSWNVIITVCVENLWLGEAVGYFVKMKDLG---FEPD--ETTMLVVL 237 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~t~~~ll 237 (514)
..|...|++++|...|.+... .+ ..+|+.+...|.+.|++++|+..|++..+.- -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666555554411 01 2355556666666666666666666654320 0111 23444555
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHH
Q 046312 238 SACTELGNLSLGKWVHLQLIERGTVL-----NCQLGTALIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMI 303 (514)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li 303 (514)
..|.. |++++|...+++..+..... ...++..+...|.+.|++++|+..|++..+ .+ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 66666666665554431100 123444445555555555555555544432 00 11333333
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 046312 304 LGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~ 323 (514)
..+...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555444
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=3.2e-07 Score=79.60 Aligned_cols=172 Identities=11% Similarity=-0.033 Sum_probs=121.9
Q ss_pred HHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC----CchHHHHHHHHHH
Q 046312 81 ARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEIS----GLNEGMQVQANVT 156 (514)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 156 (514)
|...|++.....++.++..+-..|...+++++|++.|++..+.| +...+..+...+.. + +.++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555544325567777778888888888888888888887765 45666677777766 6 7888888888887
Q ss_pred HhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccCCCC-----hhhHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 046312 157 KSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMCERS-----VVSWNVIITVCVE----NLWLGEAVGYFVKMKD 223 (514)
Q Consensus 157 ~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 223 (514)
+.| +...+..|...|.. .+++++|.++|++..+.+ ..++..|...|.. .+++++|...|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 665 45667777777776 778888888888875543 4677777777877 7788888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhcc------CChHHHHHHHHHHHHhCC
Q 046312 224 LGFEPDETTMLVVLSACTEL------GNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 224 ~~~~p~~~t~~~ll~~~~~~------g~~~~a~~~~~~~~~~~~ 261 (514)
.+ .+...+..|-..|... .+.++|...++...+.|.
T Consensus 158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 62 2333455555555432 278888888888877764
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=9.8e-08 Score=80.17 Aligned_cols=156 Identities=11% Similarity=-0.055 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... |+...+..+....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH---
Confidence 34455566666777777777766664 345566666666666677777666666655432 2322211111000
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
+...+...+|...+++.. ..| +...+..+...+...|+ +++|.
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~ 128 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEAL 128 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHH
Confidence 001111112334444432 223 35555556666666666 66666
Q ss_pred HHHHHHHhcCCCC--CchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 423 EVRRRLLELEPRG--SQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 423 ~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
..++.+.+.+|+. ..++..++.+|...|+.++|...|++..
T Consensus 129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666653 3356666777777777777776666543
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=7.1e-07 Score=78.23 Aligned_cols=205 Identities=10% Similarity=-0.042 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE-P-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC--QLGTA 270 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 270 (514)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...++.+.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788888888888888888875321 1 1346667778888888888888888888877543221 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVED 349 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 349 (514)
+..++...|.. .+ ..|..+...+...|++++|...|+++++. .|+.. .......
T Consensus 84 ~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~---------- 138 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR---------- 138 (225)
T ss_dssp HHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------
T ss_pred HHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------
Confidence 44444433211 00 11222333344567888888888888874 34422 2111100
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
...+...+.. ....+...|.+.|++++|...|+++. ..|+. ..+..+..++...|+ .+.|.+.
T Consensus 139 l~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~ 206 (225)
T 2yhc_A 139 LVFLKDRLAK---------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKV 206 (225)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHH
Confidence 0001111110 11235566777777888777777764 33332 456667777777777 7777777
Q ss_pred HHHHHhcCCCCC
Q 046312 425 RRRLLELEPRGS 436 (514)
Q Consensus 425 ~~~~~~~~p~~~ 436 (514)
++.+....|++.
T Consensus 207 ~~~l~~~~~~~~ 218 (225)
T 2yhc_A 207 AKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHCCSCCC
T ss_pred HHHHHhhCCCch
Confidence 777777777654
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=1.5e-07 Score=76.49 Aligned_cols=102 Identities=11% Similarity=0.003 Sum_probs=89.1
Q ss_pred CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 362 GIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
.+.|+ ...+..+...+.+.|++++|...|+++. ..| +...|..+..++...|+ +++|...++++.+++|+++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhCCCCcHH
Confidence 44565 5567778888999999999999999886 344 67888999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|..++.+|.+.|++++|...|++..+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988754
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=3e-05 Score=70.66 Aligned_cols=214 Identities=6% Similarity=-0.004 Sum_probs=128.8
Q ss_pred hCCC-chHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC--CchHHHHHHHHHHHhCCCCCcchHHHHHHHH----HcC
Q 046312 106 WSDR-PREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS--GLNEGMQVQANVTKSGLDSDVYTNNNLVRFY----GSC 177 (514)
Q Consensus 106 ~~g~-~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 177 (514)
+.|. .++|+++++.+... .|+.. .|+.--.++...| +++++++.++.+.... +-+..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888888774 45554 4676666777777 8888888888887764 33555666555444 444
Q ss_pred ---CCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----
Q 046312 178 ---RRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLG--EAVGYFVKMKDLGFEPDETTMLVVLSACTELGN---- 245 (514)
Q Consensus 178 ---~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---- 245 (514)
++++++..+++++ .+.+-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 6777777777777 3345566666666666677777 7778888877764 3456666655555555554
Q ss_pred --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCc------CCHHHHHHHHHHHHHcCChHHHH
Q 046312 246 --LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC-ARLLFSRMEE------INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 246 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
++++.+.++.++...+. |...++-+...+.+.|+... +..+.+++.+ .+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 56666666666665532 55555555555555554322 3334443332 23445555555555555555555
Q ss_pred HHHHHHHH
Q 046312 317 ELFSNMKN 324 (514)
Q Consensus 317 ~~~~~m~~ 324 (514)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=9.7e-08 Score=77.77 Aligned_cols=110 Identities=8% Similarity=-0.092 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 243 (514)
+..+...|.+.|++++|.+.|++. .+.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...+.+.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334444444455555554444444 22234445555555555555555555555544432 12334444444445555
Q ss_pred CChHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 244 GNLSLGKWV-HLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 244 g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
|+.+++... ++...+..+ -++.+|......+...
T Consensus 113 ~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCE 147 (150)
T ss_dssp CSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 554433322 344444331 1333444444433333
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=2.3e-07 Score=72.88 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
.+......|.+.|++++|++.|++.. .+.+...|..+..++...|+ +++|...++++++++|+++.+|..++.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME---FQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444444555555555555554443 22234444445555555555 55555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046312 447 AEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~ 464 (514)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=6.7e-07 Score=77.47 Aligned_cols=97 Identities=9% Similarity=-0.027 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC-------
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS------- 436 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------- 436 (514)
+...+..+...|.+.|++++|.+.+++.. .+.+...+..+...+...|+ ++.|.+.++.+.+..|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~ 112 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLRGNQLIDYKIL 112 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCCccHHHHHHh
Confidence 33344444444444444444444444432 12233444444444444444 4555555555544444433
Q ss_pred ---------chHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 437 ---------QNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 437 ---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55566666666666666666666666544
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=1.2e-06 Score=75.85 Aligned_cols=125 Identities=11% Similarity=-0.123 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455666777777777777777777777777777777777777777777777777642 23455666677777777777
Q ss_pred HHHHHHHHHHHHhhCCC-------------C-chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 348 EDGYRYFHEMEHVHGIK-------------P-MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
++|...+++..+...-. | ....+..+..+|.+.|++++|.+.|+++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776531111 1 1134445555555555555555555554
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=2e-05 Score=71.77 Aligned_cols=223 Identities=10% Similarity=-0.009 Sum_probs=110.9
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCC--ChHHHHHHHcccCC--CCCcccHHHHHHHH-
Q 046312 30 QCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSK--NLTYARSILCNYVN--DSVPIPWNNLIRGY- 104 (514)
Q Consensus 30 ~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~li~~~- 104 (514)
.+.+++......+++..+.+.++... +-+..+|+.--..+. ..| ++++++.+++.+.. +.+..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~--~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILK--NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 33344444344556666666665544 223355555555555 555 77777777766531 23334455433333
Q ss_pred ---HhC---CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch--HHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 105 ---AWS---DRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN--EGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 105 ---~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
... +++++++++++.+.+.. +-|..+|+.-.-++...|.++ ++++.++++.+.. +-|...|+....++..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 333 56667777777766642 334445555555555666666 6666677666664 3355555555555555
Q ss_pred CCC------HHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHhccC
Q 046312 177 CRR------KRDACKVFDDM---CERSVVSWNVIITVCVENLWLGE-AVGYFVKMKDLG--FEPDETTMLVVLSACTELG 244 (514)
Q Consensus 177 ~~~------~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g 244 (514)
.++ ++++.+.+++. ...|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 544 44555554444 22344455555444444444322 223333332211 0123344444444444444
Q ss_pred ChHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLI 257 (514)
Q Consensus 245 ~~~~a~~~~~~~~ 257 (514)
+.++|.++++.+.
T Consensus 273 ~~~~A~~~~~~l~ 285 (306)
T 3dra_A 273 KYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=3.6e-06 Score=77.01 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=113.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSS-ISPNYV----TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHT 372 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 372 (514)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877632 122211 2334556667777888888888888763111222 235788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------Cc
Q 046312 373 MADILARAGHLKEAYTFIMNMP-----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQ 437 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (514)
+...|...|++++|...++++. ...+ ..++..+...|...|+ +++|...++++.++.+.. ..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888888888888888887763 1112 2467788888899999 999999888888765322 45
Q ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 046312 438 NLVIVANKYAEVGM-WEKVSNVRRFMKN 464 (514)
Q Consensus 438 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 464 (514)
+|..++.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 68899999999995 6999999988753
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=2.5e-07 Score=75.10 Aligned_cols=102 Identities=7% Similarity=-0.085 Sum_probs=83.1
Q ss_pred CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 362 GIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
.+.|+ ...+..+...+.+.|++++|...|+++. .+.+...|..+..++...|+ +++|...++.+.+++|+++.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCTHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCchH
Confidence 33454 5566677788888899999998888875 33467788888888888898 999999999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..++.+|...|++++|.+.|++..+..
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999998887643
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=1.5e-05 Score=72.94 Aligned_cols=158 Identities=9% Similarity=-0.023 Sum_probs=90.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLG-FEPDET----TMLVVLSACTELGNLSLGKWVHLQLIERGTVL-N----CQLGTA 270 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 270 (514)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877642 122211 22335555666677888888887777643221 1 224666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN-YVTFL 335 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 335 (514)
+..+|...|++++|...|+++.+ . ...++..+...|.+.|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666677777766666666542 1 1234555566666666666666666655431 11111 34455
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHH
Q 046312 336 GVLCACNHAG-MVEDGYRYFHEME 358 (514)
Q Consensus 336 ~ll~~~~~~~-~~~~a~~~~~~~~ 358 (514)
.+..++...| .+++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555 3456655555544
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=9e-07 Score=73.04 Aligned_cols=126 Identities=8% Similarity=-0.034 Sum_probs=96.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
.+..+...+...|+++.|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877764 12346677777788888888888888887765 3345677888888888
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLV--IVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
..|+ ++.|...++.+.+..|.+...+. .++..+.+.|++++|.+.++...
T Consensus 93 ~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGK---FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999 99999999999999998877774 44444888899999999988765
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=2e-06 Score=78.71 Aligned_cols=164 Identities=11% Similarity=-0.052 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--CCCc--hH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-----VTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--IKPM--RI 368 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~ 368 (514)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777776664221111 1233344556667778888877777664211 1111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--C--
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP----FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR--G-- 435 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~-- 435 (514)
+|+.+...|...|++++|...++++. ..|+ ..++..+...|...|+ +++|...++++.++.++ +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHhcCcHH
Confidence 67777777888888888877777653 1122 1467777778888888 88888888887765422 1
Q ss_pred --CchHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046312 436 --SQNLVIVANKYAEVGMWEKV-SNVRRFMKN 464 (514)
Q Consensus 436 --~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 464 (514)
..+|..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34677899999999999999 777777653
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=7.1e-07 Score=70.09 Aligned_cols=109 Identities=11% Similarity=-0.068 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 446666677778888888888888877641 3346677778888888888888888888775 334577788888888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...|+ +++|.+.++++.+++|++..++..|..+
T Consensus 92 ~~~~~---~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMRE---WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCC---HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88888 8888888888888888887777666554
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=8.7e-07 Score=75.97 Aligned_cols=81 Identities=12% Similarity=-0.026 Sum_probs=35.7
Q ss_pred CCCHHHHHH---HhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHH
Q 046312 177 CRRKRDACK---VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDL----GFEP-DETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 177 ~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~ 248 (514)
.|++++|.+ ++..-+.....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555 332222223344555555555555555555555554431 1111 12234444444555555555
Q ss_pred HHHHHHHHH
Q 046312 249 GKWVHLQLI 257 (514)
Q Consensus 249 a~~~~~~~~ 257 (514)
|...+++..
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=4.5e-06 Score=76.40 Aligned_cols=162 Identities=6% Similarity=-0.133 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--I-NV------WTWSAMILGLAQHGYAEEALELFSNMKNSSI---SPN--YV 332 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 332 (514)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677777888888777765442 1 11 2233455566777888888888888775321 111 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------CH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-------NP 399 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 399 (514)
+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777888888888888888888887732111222 2477788888888888888888887763 111 15
Q ss_pred HHHHHHHHHHHhcCCCCcchHH-HHHHHHHHhc
Q 046312 400 IVLRALLSASSIHDAKYQDGVG-NEVRRRLLEL 431 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a-~~~~~~~~~~ 431 (514)
.+|..+...+...|+ .++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEY---EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---cHHHHHHHHHHHHHH
Confidence 677888888888888 8888 6667766553
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.6e-06 Score=67.34 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555666666666666666665531 2234555566666666666666666666654 233455666666667
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
...|+ ++.|...++.+.+..|+++..+..++.++.+.
T Consensus 88 ~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 77777 77777777777777777666666666665544
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=5.5e-07 Score=75.52 Aligned_cols=120 Identities=7% Similarity=0.036 Sum_probs=80.3
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSA-SSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~~~~ 418 (514)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+++. .+.+...+..+... +...|+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~---~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ---H 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---C
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC---c
Confidence 34566777777777766541 2345666677777777777777777777764 22355666666666 666677 7
Q ss_pred --hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 419 --GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 419 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+.|...++.+.+..|+++.++..++.+|...|++++|...+++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777777888888888888888887776654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=1.1e-06 Score=82.30 Aligned_cols=144 Identities=10% Similarity=-0.074 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
+...|..+...+.+.|++++|...|++.++.. |+...+ . .+.+..+ . ......|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~~----~-----~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF----------S-NEEAQKA----Q-----ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC----------C-SHHHHHH----H-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC----------C-hHHHHHH----H-----HHHHHHHHHHH
Confidence 34566666777777777777777777776632 221100 0 0111000 0 01145677888
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+|.+.|++++|+..++++. .+.+...|..+..++...|+ +++|...++++.+++|++..++..++.++.+.|++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998885 34467888899999999999 99999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHH
Q 046312 453 EKV-SNVRRFMK 463 (514)
Q Consensus 453 ~~A-~~~~~~m~ 463 (514)
++| ...++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998 44566653
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.2e-06 Score=69.10 Aligned_cols=114 Identities=9% Similarity=-0.085 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555432 11234445555555555556666655555543 222455556666666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
...|+ +++|.+.++.+.+..|.+...+..++.++.+.|
T Consensus 95 ~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 66666 666666666666666666666666666666554
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=4.6e-07 Score=82.44 Aligned_cols=186 Identities=9% Similarity=-0.074 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
..+..+...+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445555566666666666666665543 2 45666666677777777777777777766532 223555666667777
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHH---HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMAD---ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
..|++++|...|++..+. .|+. ..+...+. ...+...+.. ........+......+. .+ ..|+ .
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~-~l-~~~~---~ 151 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLT-RL-IAAE---R 151 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHH-HH-HHHH---H
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHH-HH-HHHH---H
Confidence 777777777777776653 2221 00111111 1122222222 11222233333333332 22 2466 7
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEV-GMWEKVSNVRRFMKN 464 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 464 (514)
+.|.+.++.+.+.+|++......+...+.+. +.+++|.++|++..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777778888887665555666666666 678889999988764
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=1.4e-06 Score=68.32 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344445555556666666666666665431 2234555556666666666666666666553 223455666666666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
...|+ ++.|...++.+.+..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777 77777777777777776666666677766666653
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=4.8e-06 Score=68.57 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33444445555555555555554432 234455555555555666666666665555532 22344555555555566
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHH--HHHHHHHHhcCCHHHHHHHHHh
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHY--HTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 392 (514)
|++++|...++++.+... .+...+ ...+..+.+.|++++|.+.+.+
T Consensus 95 ~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 666666666666554311 112222 2223334455556665555544
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=2.1e-06 Score=68.97 Aligned_cols=100 Identities=6% Similarity=-0.115 Sum_probs=81.1
Q ss_pred CCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 364 KPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 364 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
.|+ ...+..+...+.+.|++++|...|+++. .+.+...|..+...+...|+ ++.|...++.+.+++|+++.++.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL---YEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCcHHHH
Confidence 443 4455667777888889999988888875 33467778888888888888 99999999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++.+|...|++++|.+.+++..+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998887543
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=3.2e-06 Score=72.39 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS----SISP--NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---- 366 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 366 (514)
.++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34455555566666666666666555442 1011 1233455555666666666666666665532111111
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..++..+...+...|++++|.+.+++.
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223455566666667777666666554
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.2e-06 Score=67.15 Aligned_cols=97 Identities=7% Similarity=-0.101 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|+ +++|...++.+.+++|+++.++..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455666677777888888888877764 33356777777778888888 888888888888888888778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 046312 445 KYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+|...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888776543
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=9.4e-06 Score=72.31 Aligned_cols=121 Identities=8% Similarity=-0.074 Sum_probs=48.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcH
Q 046312 272 IDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMV 347 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~ 347 (514)
...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 3344444444444444444432 211122233334444455555555554332210 010 11333344444455555
Q ss_pred HHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 348 EDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
++|+..|++.... ...|. .........++.+.|+.++|..+|+++.
T Consensus 188 ~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 188 TEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544421 11122 2223333444445555555555555443
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=5.4e-06 Score=73.86 Aligned_cols=124 Identities=7% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNP----IVLRALLSASSIH 412 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 412 (514)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455566666666666665532 343334444444556666666666666654422221 2445555666666
Q ss_pred CCCCcchHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 413 DAKYQDGVGNEVRRRLLELE--PR-GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|+ .++|...++++..-. |. .+......+.++.+.|+.++|...|+++....
T Consensus 185 G~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 AL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66 666666666665322 22 22345566666666666666666666665543
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=2.1e-06 Score=78.08 Aligned_cols=47 Identities=11% Similarity=-0.071 Sum_probs=19.7
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARA-GHLKEAYTFIMNM 393 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~~ 393 (514)
.|+.++|.+.++...+ ..|+. .....+...+.+. +.+++|.++|.++
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555554442 23332 2222222223332 4455555555544
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=2.6e-06 Score=64.71 Aligned_cols=98 Identities=8% Similarity=-0.093 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--CCchHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR--GSQNLVIV 442 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l 442 (514)
...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ +++|...++++.+..|. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER---YEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3445556666677777777777776664 33356667777777777777 77888888888787777 77777788
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCC
Q 046312 443 ANKYAEV-GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 443 ~~~~~~~-g~~~~A~~~~~~m~~~~~ 467 (514)
+.+|.+. |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 8888888 888888888887776543
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=5.7e-06 Score=65.70 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHH
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIV 442 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (514)
.+...+..+...+...|++++|...|++.. .+.+...+..+...+...|+ ++.|...++.+.+++|+++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345566677777777777777777777764 33356677777777777888 8888888888888888877778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 046312 443 ANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.+|...|++++|...+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877653
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.34 E-value=2.4e-06 Score=69.22 Aligned_cols=93 Identities=8% Similarity=-0.153 Sum_probs=49.7
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHh
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVE 207 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 207 (514)
.+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|...|++. .+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34444455555555555555555555553 234445555555555555555555555554 22234455555555555
Q ss_pred CCChhHHHHHHHHHHHC
Q 046312 208 NLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~ 224 (514)
.|++++|...|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555553
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=4.1e-06 Score=69.14 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALL 406 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 406 (514)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++.. ..| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3556777888889999999999999999875 34 57788888999999999999999998885 334 578888899
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
..+...|+ ++.|...++++.++.|++...+....
T Consensus 87 ~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMAD---YKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999 99999999999999999887655433
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=2.3e-06 Score=66.52 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+.+.|++++|...|+++. ..| +...|..+...+...|+ .++|...++++.+++|+++.++..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456677888999999999998886 334 67888888889999999 999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 046312 448 EVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~ 466 (514)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999987644
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=1.9e-05 Score=61.08 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
..+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444444555555555555555554432 233444444445555555555555555544431 223334444444444
Q ss_pred ccCcHHHHHHHHHHHHH
Q 046312 343 HAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~ 359 (514)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45555555555554443
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00051 Score=63.28 Aligned_cols=176 Identities=8% Similarity=0.019 Sum_probs=115.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
.+-....+.+..++|+++++++... .|+.. .|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344455667899999999885 45544 5777666777777 5899999999998775 4466777777777666
Q ss_pred C-C-CHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 177 C-R-RKRDACKVFDDMCER---SVVSWNVIITVCVENLWLG--------EAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243 (514)
Q Consensus 177 ~-~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 243 (514)
. + +++++..+++++.+. |-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 6 788888888888554 4455555444444444555 7888888888765 44677777776666666
Q ss_pred CC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 244 GN-------LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 244 g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
++ ++++.+.++..+...+. |...++-+-..+.+.|
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 65 45666666666665532 4555554444444444
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=1.2e-05 Score=61.58 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 415 (514)
...+...|++++|...+++..... +.+...+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 87 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR- 87 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-
Confidence 333334444444444444443320 1123333334444444444444444444332 11223344444444444444
Q ss_pred CcchHHHHHHHHHHhcCCCCCch
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
++.|.+.++.+.+..|+++..
T Consensus 88 --~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 88 --FEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp --HHHHHHHHHHHHTTCTTCHHH
T ss_pred --HHHHHHHHHHHHHcCCCCHHH
Confidence 444444444444444444333
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=5.5e-06 Score=70.78 Aligned_cols=169 Identities=9% Similarity=-0.063 Sum_probs=99.5
Q ss_pred HHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDG 350 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 350 (514)
.....|+++++.+.|+...+ .....+..+...+...|++++|...|++..+.. |+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------- 77 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------- 77 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-------------
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-------------
Confidence 33444555555555544332 234456666677777777777777777777632 221100000
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 351 YRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 351 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
....-.. ......+..+..+|.+.|++++|...++++. .+.+...+..+..++...|+ ++.|...++.+
T Consensus 78 --~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~a 148 (198)
T 2fbn_A 78 --ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKA 148 (198)
T ss_dssp --HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred --hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHH
Confidence 0000000 0013566777788888888888888888775 33467788888888999999 99999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCHHHHH-HHHHHHHhCC
Q 046312 429 LELEPRGSQNLVIVANKYAEVGMWEKVS-NVRRFMKNVG 466 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 466 (514)
.++.|++..++..+..++...|+.+++. ..++.|-..+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998888888998888888887777 5566554443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=8.6e-06 Score=62.37 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+ ++.|...++.+.+..|+++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567778888999999999999999985 34478888889999999999 99999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 046312 444 NKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.+|...|++++|.+.+++..+.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999988754
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=1.1e-05 Score=67.43 Aligned_cols=124 Identities=10% Similarity=0.077 Sum_probs=81.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH-HHhcCCH--H
Q 046312 308 QHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI-LARAGHL--K 384 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 384 (514)
..|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566677777777766542 2345666677777777777777777777777642 2245566666666 6677777 7
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 385 EAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 385 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
+|...++++. ..| +...+..+...+...|+ ++.|...++.+.+..|++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCcc
Confidence 7777777764 233 46667777777777888 88888888888888777654
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=3.5e-06 Score=68.20 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSA 408 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 408 (514)
..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|+++. ..| +...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34555556666777777777777777653 33 45566667777777777777777777664 223 45666667777
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 409 SSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
+...|+ +++|...++.+.++.|+++..
T Consensus 99 ~~~~g~---~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGE---LAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTC---HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCC---HHHHHHHHHHHHHHCcCCCcc
Confidence 777777 777777777777777766543
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=8.2e-06 Score=64.16 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
+.+...+..+...+.+.|++++|.+.|++.. ..| +...+..+...+...|+ +++|...++.+.+..|+++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE---FQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCchHHHHH
Confidence 3456678888999999999999999999875 344 67888999999999999 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++.+|.+.|++++|.+.+++.....
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999987653
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-05 Score=62.98 Aligned_cols=108 Identities=10% Similarity=-0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP-F-QPNPIVLRAL 405 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l 405 (514)
..+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++.. . +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444455555555555555442 2333 3444445555555555555555555443 1 2234445555
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...+...|+ ++.|...++.+.++.|++...+..+..+
T Consensus 106 a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555555555 5556666665555555554444444333
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=3e-05 Score=60.49 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 33444444444555555555555544421 123344444444455555555555555554442 111233444444555
Q ss_pred HhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHD 413 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 413 (514)
.+.|++++|...|++.. ..| +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 55555555555554443 112 3344444444444433
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00088 Score=61.72 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=107.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 046312 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC-G-AV 281 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 281 (514)
..+.+..++|+++++++...+ +-+...++.--..+...| .++++..+++.++....+ +..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 344455567888888888763 234455555555555566 488888888888876643 566666665556555 5 77
Q ss_pred HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc----
Q 046312 282 GCARLLFSRMEE---INVWTWSAMILGLAQHGYAE--------EALELFSNMKNSSISPNYVTFLGVLCACNHAGM---- 346 (514)
Q Consensus 282 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---- 346 (514)
++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 888888888776 35566655444444444444 7777777777753 3455666666666666554
Q ss_pred ---HHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC
Q 046312 347 ---VEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH 382 (514)
Q Consensus 347 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 382 (514)
+++++++++++... .| |...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56777777777653 34 35556655555555554
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=7e-06 Score=64.40 Aligned_cols=93 Identities=5% Similarity=-0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc-------hH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ-------NL 439 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~ 439 (514)
.+..+...+.+.|++++|++.|+++. ..| +...|..+..+|...|+ +++|.+.+++++++.|+... +|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777764 333 46667777777777777 77777777777777765543 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 440 VIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..++.+|...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777888888888888887654
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=1.9e-05 Score=65.08 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTM 373 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 373 (514)
+...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...+++..+. .|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45677888888999999999999999988753 335677888888899999999999999998875 444 7778888
Q ss_pred HHHHHhcCCHHHHHHHHHhCC
Q 046312 374 ADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+|.+.|++++|.+.|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 899999999999999998874
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.5e-05 Score=62.28 Aligned_cols=92 Identities=8% Similarity=-0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 376 (514)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...+++..+. .|+ ...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 34444445555555555555555554431 223344444445555555555555555555442 222 3344444444
Q ss_pred HHhcCCHHHHHHHHHhC
Q 046312 377 LARAGHLKEAYTFIMNM 393 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~ 393 (514)
+...|++++|.+.|++.
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 44555555555444444
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.2e-05 Score=74.14 Aligned_cols=153 Identities=10% Similarity=-0.062 Sum_probs=78.3
Q ss_pred HHHHHcCCCHHHHHHHhhccCC--C---C---------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE--R---S---------------VVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPD 229 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 229 (514)
...+.+.|++++|.+.|..+.+ + + ..++..+...|.+.|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445666777777777766611 1 0 013556666777777777777777665542 11112
Q ss_pred HH----HHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------
Q 046312 230 ET----TMLVVLSACTELGNLSLGKWVHLQLIER----GTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEE------- 293 (514)
Q Consensus 230 ~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 293 (514)
.. ..+.+-..+...|+.+.+..+++..... +.. .-..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1111222233455666666666655432 111 1133455555666666666666655554431
Q ss_pred -C-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 294 -I-NVWTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 294 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
+ ...++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 12345555555556666666666555544
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=1.1e-05 Score=64.66 Aligned_cols=99 Identities=8% Similarity=-0.061 Sum_probs=58.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|+++. .+.+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334445555666666666666666543 23 34455556666666666666666666654 2224455555666666
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
..|+ +++|...++.+.++.|+++..
T Consensus 98 ~~g~---~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGD---LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTC---HHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCC---HHHHHHHHHHHHHhCCCCcch
Confidence 6666 666666666666666665543
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.9e-05 Score=77.11 Aligned_cols=159 Identities=8% Similarity=-0.058 Sum_probs=107.7
Q ss_pred CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 280 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
++++|...|+...+ .....|..+...+.+.|++++|...|++.++.. |+...+ . -+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----H
Confidence 34444444443332 234566677777788888888888888777631 211100 0 00000 0
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 357 MEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 357 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.. .-....|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|+ ++.|...++++.+++|+
T Consensus 312 ~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~---~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC--
T ss_pred HH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence 00 1124567788889999999999999998885 34467888999999999999 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSN-VRRFMK 463 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 463 (514)
+..++..++.++.+.|+++++.+ .++.|-
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 455554
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=3.4e-05 Score=71.94 Aligned_cols=134 Identities=13% Similarity=-0.125 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+- .....++..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 4456666666777777777777777666542 211000 000000000 0012344445555
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDG 350 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 350 (514)
|.+.|++++|+..|++..+ .+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443 234555555555666666666666666655531 12334455555555555555555
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.6e-05 Score=63.81 Aligned_cols=98 Identities=7% Similarity=0.026 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
+...+..+...+.+.|++++|.+.|++.. ..|+ ...+..+...+...|+ +++|...++.+.+..|+++..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED---YDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhCccCHHHHH
Confidence 46678888899999999999999999875 6676 6788888899999999 99999999999999999988999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++.+|...|++++|...+++.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999988654
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=6.1e-06 Score=70.51 Aligned_cols=161 Identities=14% Similarity=-0.051 Sum_probs=71.0
Q ss_pred HHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 046312 170 LVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNL 246 (514)
Q Consensus 170 li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 246 (514)
.+......|+++++.+.++.-.+. ....+..+...+.+.|++++|+..|++..+.... +. .+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------hH
Confidence 334445566677766666544221 3445667777788888888888888888764211 11 00000 00
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 247 SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
..-. . .....++..+..+|.+.|++++|+..+++..+ .+...+..+..+|...|++++|...|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 00123334444444445555555554444432 234455555555555556666665555555
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 324 NSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 324 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
+.. +-+...+..+..++...++.+++.
T Consensus 150 ~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 431 122334444444444444444444
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=3.4e-05 Score=60.40 Aligned_cols=94 Identities=6% Similarity=-0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-CCCc----hHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-IKPM----RIHYHTM 373 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~l 373 (514)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...+++..+... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4444555555555555555555555431 12234455555555555555555555555543210 0000 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 046312 374 ADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~ 393 (514)
..++...|++++|++.|++.
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=2.6e-05 Score=61.74 Aligned_cols=99 Identities=6% Similarity=-0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSA 408 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 408 (514)
...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.. .+.+...+..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444455555555555555555555555431 1224445555555555555555555555543 22234555555555
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 409 SSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...|+ ++.|...++.+.++.|+
T Consensus 87 ~~~~~~---~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMES---YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHHChh
Confidence 556666 66666666666555554
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=5.5e-05 Score=57.10 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc-CChHHHHHHHHHHHHh
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP--DETTMLVVLSACTEL-GNLSLGKWVHLQLIER 259 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 259 (514)
..|..+..++...|++++|...+++..+.. +. +...+..+..++... |++++|.+.++.+.+.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 334444444444455555555554444432 11 234444444444444 5555555544444443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00028 Score=68.18 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=133.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPD----------------ETTMLVVLSACTELGNLSLGKWVHLQLIERGTV-LN 264 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 264 (514)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|...+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999988642221 124677888899999999999988887654211 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--
Q 046312 265 C----QLGTALIDMYAKCGAVGCARLLFSRMEE---------INVWTWSAMILGLAQHGYAEEALELFSNMKNS--SI-- 327 (514)
Q Consensus 265 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-- 327 (514)
. .+.+.+...+...|+++.|..+++.... .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444555667888888888877653 12356777888888999999999988887652 21
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-CC-C-c--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 328 SPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-IK-P-M--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 328 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+. ..++..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222 34577778888889999999998888765311 11 1 1 2345666667778888888888877664
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=5.2e-05 Score=59.10 Aligned_cols=94 Identities=11% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC-CCc----hHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI-KPM----RIHYHTM 373 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~~l 373 (514)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.....- .++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444555555555555544431 223334444444444555555555555544432100 001 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 046312 374 ADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~ 393 (514)
...+.+.|++++|.+.|+++
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 44444555555555544444
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=2.1e-05 Score=61.55 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..+...+...|+ +++|...++.+.+..|++ +.++..++.+|.+.|++++|...++++..
T Consensus 41 ~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRN---FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444 455555555554444444 33344455555555555555555554443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=2.2e-05 Score=61.37 Aligned_cols=96 Identities=6% Similarity=0.005 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-------Cch
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-------SQN 438 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~ 438 (514)
..+..+...+...|++++|...|++.. .+.+...+..+...+...|+ ++.|...++.+.+..|.+ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 455666677777777777777777764 33456677777777778888 888888888887777655 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7889999999999999999999887643
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.0013 Score=60.35 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC-hHHHHHHH
Q 046312 246 LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG--AVGCARLLFSRMEE---INVWTWSAMILGLAQHGY-AEEALELF 319 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~ 319 (514)
++++..+++.+.....+ +..+++.-.-++.+.| .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555555432 4445554444444555 35666666666654 345556555555555565 46667777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc----
Q 046312 320 SNMKNSSISPNYVTFLGVLCACNHA--------------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA---- 380 (514)
Q Consensus 320 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 380 (514)
.++++.. +-|...|+.....+... +.++++.++++..... .| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 6666643 23444444433333322 3456666666666653 33 344454333333333
Q ss_pred -------CCHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 381 -------GHLKEAYTFIMNMP-FQPNPIVLRALLSA-----SSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 381 -------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-----~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
+.++++++.++++. ..||. .|..+..+ ....+. .++....+.++.+++|....-|..+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTT---HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhccccc---HHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 23455555555553 34442 22211111 112233 45566666666666665544444433
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=2.8e-05 Score=62.48 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPN-------------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL---- 431 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---- 431 (514)
+......+.+.|++++|++.|++.. ..|+ ...|..+..++...|+ +++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhhhcc
Confidence 3344455556666666666666553 2222 2377778888888888 88888888888888
Q ss_pred ---CCCCCchH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 432 ---EPRGSQNL----VIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 432 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+|++..+| ...+.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99888888 89999999999999999999988753
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=1.3e-05 Score=78.67 Aligned_cols=117 Identities=8% Similarity=-0.003 Sum_probs=92.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK 415 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 415 (514)
..+.+.|++++|...+++..+. .|+ ...|..+..+|.+.|++++|.+.++++. ..| +...+..+..++...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~- 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK- 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 3456778888998888888864 443 7778888888999999999999988875 444 57788888889999999
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCHHHHHHHHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANK--YAEVGMWEKVSNVRRF 461 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 461 (514)
+++|.+.++++.++.|++..++..++.+ +.+.|++++|.+.+++
T Consensus 90 --~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 --FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp --HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999988888888777 8888999999999883
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=4e-05 Score=62.33 Aligned_cols=61 Identities=7% Similarity=-0.102 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNS----SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444455555555555555544331 1111 123344555556666666666666665554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=0.0001 Score=57.49 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=37.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHH
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPN-Y---VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMA 374 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 374 (514)
...+...|++++|...|++..+.. |+ . ..+..+..++...|++++|...++++.+. .|+ ...+..+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 344445555555555555554421 11 1 23334444444455555555555544443 121 22333444
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 046312 375 DILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~ 393 (514)
.++.+.|++++|...|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=3.3e-05 Score=62.87 Aligned_cols=93 Identities=9% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC------
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR------ 434 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~------ 434 (514)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|+ +++|.+.++.+.+..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHccchHh
Confidence 44455555555666666655555542 0111 3345555566666666 66666666666554211
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
....+..++.+|...|++++|.+.+++..+
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 123567889999999999999999988764
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=2.2e-05 Score=73.36 Aligned_cols=148 Identities=12% Similarity=-0.041 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
...+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 455667777788888999999988887763 344331 22333333332221 1136777888
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCH
Q 046312 376 ILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY-AEVGMW 452 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 452 (514)
+|.+.|++++|+..+++.. .+.+...|..+..++...|+ ++.|...++.+.+++|++..++..+..+. ...+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~---~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ---MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHTTC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888889999888888875 33367788888888888888 88888888888888888888887777774 445667
Q ss_pred HHHHHHHHHHHhCC
Q 046312 453 EKVSNVRRFMKNVG 466 (514)
Q Consensus 453 ~~A~~~~~~m~~~~ 466 (514)
+++...|+.|....
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 77888888776543
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=6.5e-05 Score=70.98 Aligned_cols=138 Identities=7% Similarity=-0.036 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMA 374 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 374 (514)
...+..+...+.+.|++++|+..|++.++. .+... ..... +... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHH
Confidence 345667777788888888888888877652 01000 00001 1111 1122 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+|.+.|++++|++.++++. ..| +...+..+..++...|+ +++|.+.++++.++.|++..++..+..++...++.
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 444 57888889999999999 99999999999999999988888999999888888
Q ss_pred HHHHHH
Q 046312 453 EKVSNV 458 (514)
Q Consensus 453 ~~A~~~ 458 (514)
+++.+.
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877654
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.94 E-value=0.0023 Score=58.67 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=127.2
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHG--YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM-VEDGYRYF 354 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 354 (514)
+++++.+++.+.. .+..+|+.-.-.+...+ .+++++.++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777764 56778887777777777 4899999999999864 4466677766666777787 68999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhc--------------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC---
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARA--------------GHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK--- 415 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~--- 415 (514)
+.+.+.. +-|...|+.....+.+. +.++++++.+.+.. ..| |...|+-+-..+... ..
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~-~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG-SGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS-SCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cCccc
Confidence 9999862 34566676665555544 45788888888875 445 566665444333333 11
Q ss_pred ------CcchHHHHHHHHHHhcCCCCCchHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 046312 416 ------YQDGVGNEVRRRLLELEPRGSQNLVIVAN---KYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 416 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..++++.+.++.+.++.|++.-.+..++. +....|..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 12678888999999999998544443332 2235688889999999998644
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.89 E-value=8.3e-05 Score=57.56 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=38.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhc
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARA 380 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 380 (514)
+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+. .|+ ...+..+..++.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3344444455555555554444421 112333444444444445555554444444432 222 33344444444444
Q ss_pred CCHHHHHHHHHhC
Q 046312 381 GHLKEAYTFIMNM 393 (514)
Q Consensus 381 g~~~~A~~~~~~~ 393 (514)
|++++|...+++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=5.2e-05 Score=62.21 Aligned_cols=62 Identities=8% Similarity=-0.012 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..|..+..++...|+ ++.|...++.+.+++|+++.+|..++.+|...|++++|...+++...
T Consensus 64 ~~~~nla~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGD---LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555556666 66666666666666666655666666666666666666666665544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=9.7e-06 Score=62.49 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=41.4
Q ss_pred cCcHHHHHHHHHHHHHhhCC-CC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 344 AGMVEDGYRYFHEMEHVHGI-KP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
.|++++|...|++..+. +. .| +...+..+..+|.+.|++++|...|+++. .+-+...+..+..++...|+ ++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR---YE 78 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC---HH
Confidence 34555555555555531 10 12 23344455555555555555555555543 22234444555555555555 55
Q ss_pred HHHHHHHHHHhcCCCCC
Q 046312 420 VGNEVRRRLLELEPRGS 436 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~ 436 (514)
+|...++.+.+..|+++
T Consensus 79 ~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 55555555555555443
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=2.3e-05 Score=73.23 Aligned_cols=151 Identities=6% Similarity=-0.105 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 445666667777888888888888887754 454332 223344444443332 136778888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEec-c
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSG-Y 489 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 489 (514)
..|+ ++.|...++.+.+++|++..+|..++.+|...|++++|...|++..+... .....+ ..+... .
T Consensus 242 ~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~-------~~L~~l~~ 309 (338)
T 2if4_A 242 KLKR---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIR-------RELRALAE 309 (338)
T ss_dssp TTTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHH-------HHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999876543 222233 222222 3
Q ss_pred cCCcChHHHHHHHHHHHHHhh
Q 046312 490 DSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 490 ~~~~~~~~a~~~~~~m~~~~~ 510 (514)
...+..+++..+|.+|....+
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCC
Confidence 445567777778888766544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=9.6e-05 Score=60.56 Aligned_cols=67 Identities=19% Similarity=0.062 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
...|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|+ ++.|...++.+.+++|+++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCCCH
Confidence 4566777777788888888888877764 33356777778888888888 8888888888888888765
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=1.9e-05 Score=77.12 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----------------PIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
...+..+...|.+.|++++|...|+++. ..|+ ...|..+..++...|+ ++.|...++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 3455666667777777777777777664 2222 5788889999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHH-HHHHHHHH
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQ-ILETLNLH 508 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~m~~~ 508 (514)
+++|++..+|..++.+|...|++++|...|++..+... .....| ..+...+...++.+++.. ++.+|...
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~a~-------~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAAR-------LQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHH-------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987643 222223 234445555666655543 55555443
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=0.00029 Score=69.02 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666543 345667777777777777777777777777642 2345667777777777788888
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHH--HHhcCCHHHHHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPM-RIHYHTMADI--LARAGHLKEAYTFIM 391 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 391 (514)
|...+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888777764 232 3344444444 667778888888777
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.1e-05 Score=61.14 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------Cc
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQ 437 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (514)
+...+..+...+.+.|++++|.+.|++.. .+.+...+..+..++...|+ +++|.+.++.+.++.|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE---YTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 44556667777777888888888887764 33356777777778888888 888888888888888876 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.+..++.++...|+.++|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 56666666666666655554443
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=5.4e-05 Score=58.18 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=54.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHH
Q 046312 309 HGYAEEALELFSNMKNSSI-SP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 385 (514)
.|++++|+..|++.++.+. .| +...+..+..++...|++++|...+++..+. .| +...+..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 5677777788877776431 12 2455666777777778888888888877764 33 35566677777777888888
Q ss_pred HHHHHHhCC
Q 046312 386 AYTFIMNMP 394 (514)
Q Consensus 386 A~~~~~~~~ 394 (514)
|...+++..
T Consensus 80 A~~~~~~al 88 (117)
T 3k9i_A 80 GVELLLKII 88 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.0044 Score=61.90 Aligned_cols=172 Identities=8% Similarity=-0.088 Sum_probs=127.8
Q ss_pred CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 046312 280 AVGCARLLFSRMEE---INVWTWSAMILGLAQHGY----------AEEALELFSNMKNSSISPNYVTFLGVLCACNHAG- 345 (514)
Q Consensus 280 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 345 (514)
..++|++.++.+.+ .+..+|+.--..+...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777777664 244566655555555555 889999999998753 345667777777778888
Q ss_pred -cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC------
Q 046312 346 -MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK------ 415 (514)
Q Consensus 346 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~------ 415 (514)
+++++..+++++.+.. +-+...|+.-...+.+.| .++++++.++++. ..| |...|+.....+...++.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999752 345777877777777888 8999999998886 334 677777777666654221
Q ss_pred -----CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 416 -----YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 416 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
..++++.+.++.+.+++|++..+|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 226888899999999999999999999999999988554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.64 E-value=0.00052 Score=64.73 Aligned_cols=138 Identities=4% Similarity=-0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG 310 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (514)
..+..+...+.+.|++++|...|++.++.-. .. ......+. .......+...|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAEDAD----GAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCHHH----HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccChHH----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566666666777777766666654210 00 00000000 00011123466777778888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 388 (514)
++++|+..+++.++.. +-+...+..+..+|...|++++|...|+++.+. .| +...+..+...+.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888742 234667777778888888888888888888764 44 35556666666666666666643
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00031 Score=50.66 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+ +++|...++++.+..|+++.++..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4456666777777777777777777764 23356667777777788888 888888888888888877777777777
Q ss_pred HHHhcC
Q 046312 445 KYAEVG 450 (514)
Q Consensus 445 ~~~~~g 450 (514)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776544
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00014 Score=71.03 Aligned_cols=123 Identities=10% Similarity=0.043 Sum_probs=81.3
Q ss_pred HhccCcHHHHHHHHHHHHHhhC--CC---Cc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHH
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHG--IK---PM-RIHYHTMADILARAGHLKEAYTFIMNMP---------FQPN-PIVLRA 404 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 404 (514)
+...|++++|..++++..+... +. |+ ..+++.|...|...|++++|..++++.. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3355666666666655554311 11 22 3456666777777777777766666552 3333 356777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLE-----LEPRGSQ---NLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|...|...|+ +++|...++++.+ ++|+.+. ....+..++...|++++|...++++++..
T Consensus 399 La~~~~~~G~---~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGH---IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777 7777777777765 3566654 34578889999999999999999998644
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00038 Score=51.57 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+...+..+...+...|+ +++|...++.+.+++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN---ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888899 999999999999999998888999999999999999999999887653
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.55 E-value=0.00034 Score=56.16 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCCH-HHH----HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-F-------QPNP-IVL----RALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~-------~p~~-~~~----~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.|..+..++.+.|++++|+..+++.. . .|+. ..| .....++...|+ +++|...++++.++.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCc
Confidence 66677777777777777777776654 4 6754 566 778888899999 999999999999998887
Q ss_pred CchHH
Q 046312 436 SQNLV 440 (514)
Q Consensus 436 ~~~~~ 440 (514)
.....
T Consensus 136 ~~~~~ 140 (159)
T 2hr2_A 136 KGETP 140 (159)
T ss_dssp CSCCT
T ss_pred HHHHH
Confidence 65544
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00014 Score=54.88 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-------hH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-------RI 368 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~ 368 (514)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3455566666777777777777777776642 23455666666777777777777777777763 3444 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+..+..++...|+.++|...++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4445555555666655555555444
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.51 E-value=0.00093 Score=48.55 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
..|...+..+..++...++....+++...++++.+.+|+++.+...++..+.+.|++++|..+|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567778888888876666555799999999999999999999999999999999999999999999886543
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00085 Score=65.48 Aligned_cols=120 Identities=12% Similarity=-0.064 Sum_probs=60.0
Q ss_pred HhccCChHHHHHHHHHHHHhC---CCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc----------CC-HHHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERG---TVL----NCQLGTALIDMYAKCGAVGCARLLFSRMEE----------IN-VWTWSA 301 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~ 301 (514)
+...|++++|..++++.++.. +.+ ...+++.|..+|...|++++|+.++++..+ |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666555431 111 234555566666666666666665555442 11 234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKN-----SSI-SPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
|...|...|++++|+.++++..+ .|. .|+ ..+...+-.++...+.+++|...+..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555543 121 111 12233344445555555555555555544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.48 E-value=0.0023 Score=50.56 Aligned_cols=109 Identities=15% Similarity=-0.026 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCAR 285 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 285 (514)
++++|++.|++..+.| .|+.. +-..|...+.+++|...|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 23322 4444444555555666666655554 34444445555544 44555555
Q ss_pred HHHHhcCc-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 046312 286 LLFSRMEE-INVWTWSAMILGLAQ----HGYAEEALELFSNMKNSS 326 (514)
Q Consensus 286 ~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 326 (514)
++|++..+ .+...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554433 334444444444444 445555555555544443
No 202
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.48 E-value=0.015 Score=44.14 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 300 SAMILG--LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 300 ~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
..||.+ +.-.|..++..++..+.... .+..-|+.+|.-....-+=+...++++.+-+.|.+.
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------- 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------- 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH-------------
Confidence 344444 55678999999999988763 466778888887777777777788888776543332
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 378 ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
.+|+......-+-.+. .+....+..+......|. -+...++...+..-.+.++.....++.+|.+.|+..+|.+
T Consensus 73 -~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~K---kDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 -KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGK---RDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp -GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTC---HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhcc---HhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 3555566555555554 345566667788888899 7777777777555455557888899999999999999999
Q ss_pred HHHHHHhCCCC
Q 046312 458 VRRFMKNVGLK 468 (514)
Q Consensus 458 ~~~~m~~~~~~ 468 (514)
++++..++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999999985
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00057 Score=52.01 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+...+..+...+...|+ ++.|...++.+.+.+|++..++..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQ---FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666 66666666666666666666666667777777777777766666654
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.41 E-value=0.00013 Score=58.47 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG-----------MWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 467 (514)
+++|...++++++++|+...+|..++.+|...| ++++|.+.|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 458999999999999999999999999998875 89999999999887543
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.38 E-value=5.3e-06 Score=77.67 Aligned_cols=399 Identities=9% Similarity=0.029 Sum_probs=233.5
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (514)
.+.+|..|-.+.. +.|.+.+|...|-+ ..|+..|..+|.+..+.|++++-+..+...++.. -++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL--~~~~v~eAIdsyIk---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQL--QKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTT--TSSSCTTTTTSSCC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred CccHHHHHHHHHH--ccCchHHHHHHHHh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 4567888888888 78888888776655 4477888899999999999999998887666542 233444578888
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC------------------------CCC
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC------------------------ERS 194 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~------------------------~~~ 194 (514)
|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+. ..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998888877655442 4666666777788888888888877776662 136
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
+.+|-.+-.+|...+.+.-|.-.--.++- .|| ....++..|-..|.+++-..+++...... .....+|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 77888888889888888776544333332 222 12235556777888888888777765321 2356678888877
Q ss_pred HHhcCCHHHHHHHHHhcCc-----------CCHHHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCC
Q 046312 275 YAKCGAVGCARLLFSRMEE-----------INVWTWSAMILGLAQHGYAEEALELF-------------SNMKNSSISPN 330 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~g~~p~ 330 (514)
|++- ++++..+.++..-. .....|.-++-.|..-.++|.|.... .+.+. -..|
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN 349 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 349 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSC
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--Hcch
Confidence 7765 55666665554322 24467888888888888888765432 11111 1234
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
...|-..|.-|.... +..--.++.-+.. .+.++ .+++.+.+.|++.-....+.......+...-.++-..|.
T Consensus 350 ~EiyYKAi~FYL~e~-P~lL~DLL~vL~p--rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 350 VELYYRAIQFYLEFK-PLLLNDLLMVLSP--RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp SHHHHHHHHHHTTSC-CTTSHHHHHHHCT--TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hHHHHHHHHhccc--cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444454444322 1111122222111 11111 123444445554444444444443344555555556666
Q ss_pred hcCCCCcchHHHHHHHHH---------HhcCCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECC
Q 046312 411 IHDAKYQDGVGNEVRRRL---------LELEPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGG 480 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~---------~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 480 (514)
...| ++.-+...+.. .++..-+ ......-+..|.+.++|+++.++.++=+ + |
T Consensus 422 EEED---y~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk---l-------y----- 483 (624)
T 3lvg_A 422 TEED---YQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---L-------Y----- 483 (624)
T ss_dssp HTTC---CHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC---C-------T-----
T ss_pred hhhh---HHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcc---c-------H-----
Confidence 6666 44433332211 1111111 1222355667777788888776654211 1 1
Q ss_pred eEEEEEecccCCcChHHHHHHHHHHHHH
Q 046312 481 SIHRFYSGYDSQVELAGIYQILETLNLH 508 (514)
Q Consensus 481 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 508 (514)
..-+...+.+|+.+-+.++++-..+.
T Consensus 484 --kDAietAa~S~~~elaeeLL~yFv~~ 509 (624)
T 3lvg_A 484 --KDAMQYASESKDTELAEELLQWFLQE 509 (624)
T ss_dssp --TGGGTTTTTCCCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11223345666777666666655443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.0021 Score=50.85 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCCHHHHH
Q 046312 109 RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS----CRRKRDAC 184 (514)
Q Consensus 109 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~ 184 (514)
++++|++.|++..+.| +.... +-..+...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666654 22222 4445555555666666666666554 34455555555555 45555555
Q ss_pred HHhhccC-CCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCC
Q 046312 185 KVFDDMC-ERSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 185 ~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 225 (514)
++|++.. ..+...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555542 2344444445555544 455555555555554443
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.16 E-value=0.0015 Score=49.53 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444445555555555555544421 12233444444445555555555555554443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0028 Score=46.71 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|++++|...+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555532 11234455555555555666665555555543
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.023 Score=56.74 Aligned_cols=168 Identities=5% Similarity=-0.060 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCC----------chHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 110 PREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISG----------LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.++|++.++++... .|+.. .|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34667777777664 34443 45555555555555 677777777777664 445666776667777777
Q ss_pred --CHHHHHHHhhcc---CCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------
Q 046312 179 --RKRDACKVFDDM---CERSVVSWNVIITVCVENL-WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL--------- 243 (514)
Q Consensus 179 --~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------- 243 (514)
+++++.+.++++ ...+..+|+.-.-.+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 557777777777 3345666666666666666 6777777777776654 33555665554444432
Q ss_pred -----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 244 -----GNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 244 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
+.++++.+.++.++...+. +...|.-+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 3456777777777766533 5666666666666555533
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.04 E-value=0.0078 Score=42.90 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344455555556666666666666655542 2234455555555555666666666665555543
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.97 E-value=0.025 Score=59.37 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=97.4
Q ss_pred HHHHhCCCchHHHH-HHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 102 RGYAWSDRPREAVW-VFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 102 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.- ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33445678888776 54221 11222366777778888888887665311 1123455778999
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887763 567899999999999999999999988743 3344444555677766666655555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
. ++....+|.+.|++++|++++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHH
Confidence 2 2333445556666666665533
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.81 E-value=0.002 Score=51.63 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC----------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 046312 345 GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH----------LKEAYTFIMNMP-FQP-NPIVLRALLSASSI 411 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 411 (514)
+.+++|...++...+. .| +...|..+..++.+.|+ +++|+..|++.. +.| +...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455555555555543 23 34444445555554443 346666666654 333 44566666666655
Q ss_pred c-----------CCCCcchHHHHHHHHHHhcCCCCC
Q 046312 412 H-----------DAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 412 ~-----------~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
. |+ +++|.+.++++.+++|++.
T Consensus 93 lg~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHN---FDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHH---HHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhcc---HHHHHHHHHHHHHhCCCCH
Confidence 4 46 9999999999999999875
No 213
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.79 E-value=0.38 Score=48.13 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVT----FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 380 (514)
-+.+. +.+.|...+....+.. ..+... ...+.......+...++...+...... ..+.....-.+....+.
T Consensus 224 rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 224 SVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 33443 7789999998886543 223222 233333444455344555666665432 33333344445555678
Q ss_pred CCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 381 GHLKEAYTFIMNMPFQP--NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 381 g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
|+++.|...|+.|...+ ...-.--+..+....|+ .+++...++.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 99999999999997322 23333345567778888 8888888888865
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0012 Score=48.43 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchH
Q 046312 373 MADILARAGHLKEAYTFIMNMP-FQP-NPI-VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNL 439 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (514)
....+.+.|++++|.+.|+++. ..| +.. .+..+...+...|+ +++|.+.++.+.+++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD---WQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777777664 333 445 66667777777777 7777777777777777766554
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.034 Score=58.39 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=64.3
Q ss_pred HHHHcCCCHHHHHH-HhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 046312 172 RFYGSCRRKRDACK-VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGK 250 (514)
Q Consensus 172 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 250 (514)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.-. . -.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHH
Confidence 33445778888877 554433 12223667777777888888776653211 1 122334567888887
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc
Q 046312 251 WVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE 293 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (514)
++.+.+ .+...|..+.+.+.+.|+++.|++.|.++.+
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 775432 3567788888888888888888877776654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.59 E-value=0.084 Score=48.64 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...|..+...+...|++++|...++++. ..|+...|..+...+...|+ .++|.+.++++.+++|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM---NREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 34444444444444455555555555554 33555555445555555555 55555555555555554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.015 Score=42.36 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCC-chH-HHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRI-HYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
....+...|++++|...++++.+. .| +.. .+..+..+|.+.|++++|.+.|++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677788899999999888865 44 355 77788888888899999998888875
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.33 E-value=0.011 Score=52.25 Aligned_cols=108 Identities=6% Similarity=-0.076 Sum_probs=79.3
Q ss_pred HHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCCCcchHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCH
Q 046312 384 KEAYTFIMNMP-FQPN---PIVLRALLSASSI-----HDAKYQDGVGNEVRRRLLELEPRG-SQNLVIVANKYAEV-GMW 452 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~ 452 (514)
..|...+++.. ..|+ ...|..|...|.. -|+ .++|++.++++.+++|+. ..++...++.++.. |+.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd---~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG---MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC---HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC---HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45556666654 5565 4567777777777 488 999999999999999975 88899999999885 999
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHH
Q 046312 453 EKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLH 508 (514)
Q Consensus 453 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 508 (514)
++|.+.+++.........|+... ...+.-++|..+++++.+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l--------------an~~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL--------------LVILSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH--------------HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH--------------HHHHHHHHHHHHHHHhHHh
Confidence 99999999998866543344332 4445667777777776553
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.31 E-value=0.065 Score=49.37 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 395 FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+..+|..+...+...|+ ++.|...++++.+++|+ ...|..++.++.-.|++++|.+.+++....+.
T Consensus 273 ~~~~a~~~~alal~~l~~gd---~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGK---TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45678889888888888899 99999999999999975 55678999999999999999999999887654
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.22 E-value=0.012 Score=56.32 Aligned_cols=63 Identities=11% Similarity=-0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS-----S-ISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
.+++.+...|...|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34555555555566666666555555431 1 1222 23455666666666666666666665544
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.12 E-value=0.0048 Score=59.15 Aligned_cols=82 Identities=2% Similarity=-0.149 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc-----CCCCCc---hHHH
Q 046312 380 AGHLKEAYTFIMNMP---------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL-----EPRGSQ---NLVI 441 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~ 441 (514)
.|++++|..++++.. ..|+ ..+++.|...|...|+ +++|...++++.++ +|+.+. .++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD---WEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 356666666665441 2222 2566777777777777 77777777776543 455543 5779
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|+.+|...|++++|..++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.94 E-value=0.027 Score=54.02 Aligned_cols=85 Identities=14% Similarity=0.000 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHHHhcCc-------C-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE-------I-N---VWTWSAMILGLAQHGYAEEALELFSNMKNS-----S-ISPN-YVTFLG 336 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ 336 (514)
+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++.++- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3345566666666554432 1 1 245666666777777777777777666541 2 1222 344666
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
|...|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777766554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.89 E-value=0.038 Score=43.65 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCCCc
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG---HLKEAYTFIMNMP-FQ-P--NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~ 417 (514)
.....+.+-|.+.... + .++..+.-.+..++++.+ +.+++..+|++.. .. | +...+-.|.-++.+.++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--- 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--- 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---
Confidence 4456667777776653 3 366777777788888887 5668888888875 22 4 24455556677889999
Q ss_pred chHHHHHHHHHHhcCCCCCc
Q 046312 418 DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (514)
+++|.+.++.+.+++|++..
T Consensus 87 Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999998653
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.87 E-value=0.019 Score=55.03 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc-----CCCCCc-
Q 046312 374 ADILARAGHLKEAYTFIMNMP------FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL-----EPRGSQ- 437 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~- 437 (514)
+..+.+.|++++|.+++++.. ..|+ ..+++.|...|...|+ +++|....+++.++ +|+.+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---LEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 444667888999988887652 2232 3678888889999999 99999988887754 455553
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 --NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.++.|+.+|...|++++|..++++..+.-.. ..| ..|+.+.++...+.+.+..++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999988652110 001 245567777777777776665
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.7 Score=37.48 Aligned_cols=129 Identities=7% Similarity=-0.043 Sum_probs=72.0
Q ss_pred HHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKW 251 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 251 (514)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455667777777776655 3456777777777777777777777766532 2233334444566655555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
+-+.....|- ++.....+...|+++++.++|.+..+..... ......|-.+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-----HHHHHcCcHHHHHHHHHHh
Confidence 5554444441 2344455556677777777766655422111 1112245555666665554
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.20 E-value=0.75 Score=35.12 Aligned_cols=140 Identities=11% Similarity=-0.002 Sum_probs=75.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
.-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+ ..|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3456666666666665553 2444444444444333343333333333221 1111 1223333333
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 286 LLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
..+-.+-. +....+..+..+...|+-++-.+++.++.. ..+|++...-.+..+|.+.|+..++.+++.++-++ |++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 33322221 333445566677777888887777777543 24667777777778888888888888887777765 543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.1 Score=36.43 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=50.5
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555555444 3455566666666666666666666655432 233333344455555444433
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+....+ | -++.-...+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333321 1 12223333445566666666666554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.14 E-value=0.27 Score=38.83 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHhcCCHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAG---MVEDGYRYFHEMEHVHGIKP--MRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 386 (514)
...+.+-|.+....|. ++..+-..+..++++++ +++++..+++++.+. . .| +...+-.|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666553 67777667777888877 667888999988875 2 25 355556677778899999999
Q ss_pred HHHHHhCC-CCCC
Q 046312 387 YTFIMNMP-FQPN 398 (514)
Q Consensus 387 ~~~~~~~~-~~p~ 398 (514)
.+.++.+. ..|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 99998885 5664
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.49 E-value=0.00058 Score=64.26 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=161.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 93 VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
.+..|..|..+..+.|+..+|++.|-+ .-|+..|..++.++.+.|.++.-..++...++. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 556799999999999999999988732 136677999999999999999999999887765 345556678999
Q ss_pred HHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--------------------CCCCHHH
Q 046312 173 FYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG--------------------FEPDETT 232 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~~t 232 (514)
+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+..-. -.-+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999999877555443 3565556667777777777777766665542110 1235678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---cCCHHHHHHHHHHHHHc
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME---EINVWTWSAMILGLAQH 309 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 309 (514)
|..+-.+|...+.+..|.-.--.++-. ..-...++..|-..|.+++-+.+++... +.....|+-|.-.|++-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 888888888888877765443333322 1122346677888888888888887655 36777888888888765
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 310 GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
++++..+.++..-. +.|. -.+|++|.+..-|.++.-++.
T Consensus 277 -~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 277 -KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp -CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHh
Confidence 34444444433211 1121 124556666655555554444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.42 E-value=0.21 Score=36.73 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP---------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
-.|...+.+.|+++.|...|+.+. ..+....+..|..++.+.|+ ++.|....+.+.++.|++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~---~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHH
Confidence 344555555555555555554442 01234556666666667776 677777777777777766543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.32 E-value=0.17 Score=38.36 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=47.9
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCCC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE---AYTFIMNMP-FQ-P--NPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~ 416 (514)
......+.+-|.+.... |. ++..+--.+..++.+..+... ++.+++++. .. | .....-.|.-++.+.|+
T Consensus 14 ~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-- 89 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-- 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--
Confidence 33444555555555443 32 444444455566666665544 666666654 21 2 12223334456666666
Q ss_pred cchHHHHHHHHHHhcCCCCCc
Q 046312 417 QDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~ 437 (514)
+++|.+.++.+.+.+|++..
T Consensus 90 -Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 -YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp -HHHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHHHHHHHhCCCCHH
Confidence 67777777777776666543
No 232
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.29 E-value=2.9 Score=37.58 Aligned_cols=169 Identities=9% Similarity=-0.082 Sum_probs=107.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG----YFVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
.|.++..-|.+.+++++|.+++.. -...+.+.|++..|-. +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888999999887643 2344667788766555 4556666788999988888888876
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CC
Q 046312 242 ELGNLS-LGKWVHLQLIE----RG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQH---GY 311 (514)
Q Consensus 242 ~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 311 (514)
....-+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 643221 22344444443 33 2236778888999999999999999888744333455555555444443 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
..++-- ..-..++ .|...|+...|..+++...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333221 1112222 345668888898888877654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.24 E-value=0.5 Score=36.91 Aligned_cols=96 Identities=8% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCCcccHHHHHHHHHhCCCc------hHHHHHHHHHHHcCCCCCcc-hHHHHHHH------HhccCCchHHHHHHHHHHH
Q 046312 91 DSVPIPWNNLIRGYAWSDRP------REAVWVFIDMKRRGIKPTEF-TYPFVLKA------CAEISGLNEGMQVQANVTK 157 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~ 157 (514)
..|+.+|-..+...-+.|++ +...++|++.... ++|+.. .|..-+.. +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888888 8888888887765 666542 11111111 1233677777777776655
Q ss_pred hCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 158 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
.+-.- ..+|......-.+.|++++|.+++.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 42111 2333333333344444444444443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.11 E-value=0.23 Score=36.47 Aligned_cols=62 Identities=3% Similarity=-0.161 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSS------ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
-+..+...+.+.|++..|..+|+...+.- -.+....+..+..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455666666677777777776665421 112344455556666666666666666666654
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.97 E-value=0.5 Score=33.81 Aligned_cols=66 Identities=12% Similarity=-0.054 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 366 MRIHYHTMADILARAGH---LKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...+..+..++...++ .++|..++++.. .+-+......+...+...|+ ++.|...++.+.+.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 34444444444433332 455555555553 22234455555555555666 66666666666665555
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.76 E-value=0.15 Score=45.10 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHh-----cCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhc-CC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM---RIHYHTMADILAR-----AGHLKEAYTFIMNMP-FQPN--PIVLRALLSASSIH-DA 414 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~-~~ 414 (514)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++.. +.|+ ..++......++.. ++
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34455555555543 555 4456666666766 377777777777765 5552 55565666666663 66
Q ss_pred CCcchHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 415 KYQDGVGNEVRRRLLELEPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+.+.+.++++....|.. +. ..+. ..+.-++|..+++++.+
T Consensus 256 ---~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 256 ---RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQD 297 (301)
T ss_dssp ---HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhHH
Confidence 777777777777776653 22 1222 22334555555555443
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.74 E-value=1.4 Score=34.01 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=35.9
Q ss_pred CCchHHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 364 KPMRIHYHTMADILARAGHLK---EAYTFIMNMP-FQP--NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|+..+--.+..++.+..+.+ +++.+++++- ..| .....-.|.-++.+.|+ +++|.+..+.+.+++|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCCcH
Confidence 344444444555555554433 4455555543 222 12223334445666666 6666666666666666654
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.09 E-value=3.7 Score=42.90 Aligned_cols=18 Identities=11% Similarity=-0.140 Sum_probs=9.7
Q ss_pred HHcCCCHHHHHHHhhccC
Q 046312 174 YGSCRRKRDACKVFDDMC 191 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~ 191 (514)
....|+.+++..+++...
T Consensus 384 lIh~g~~~~gl~~L~~yL 401 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYL 401 (963)
T ss_dssp HHTSSCTTTHHHHHTTTS
T ss_pred hhccCchHHHHHHHHHhc
Confidence 445555555555555553
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.09 E-value=4.9 Score=36.36 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=106.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY----FVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...+-++ ++...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566678899999999987633 23456677777655444 466667789999998888888887
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHH
Q 046312 242 ELGNLS-LGKWVHLQLIE----RG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEE 314 (514)
Q Consensus 242 ~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 314 (514)
....-+ .=..+.+.+++ .| ..-++.....+...|.+.+++.+|+..|-.-.++....+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 665421 22334444443 33 33467778889999999999999999885433334456655554444433211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 315 ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
.++...-..++ -|...++...|..+++...+
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12222223333 35556888888887776664
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.86 E-value=4.3 Score=38.83 Aligned_cols=236 Identities=9% Similarity=0.039 Sum_probs=119.9
Q ss_pred CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC--cccHHHHHHH----HHhCCCchH--HHHHHHHHHH--cC-
Q 046312 56 LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV--PIPWNNLIRG----YAWSDRPRE--AVWVFIDMKR--RG- 124 (514)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~li~~----~~~~g~~~~--a~~~~~~m~~--~~- 124 (514)
......+...++..|. ..|+++...+.+.-+..... ..+-..+++. +......+. -+.+.+.... .|
T Consensus 52 ~~s~~r~l~~iv~l~~--~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLA--SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHH--HHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3444667778888888 88888887666554431111 1222233322 222222221 1122211111 01
Q ss_pred CCC---CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-----cchHHHHHHHHHcCCCHHHHHHHhhcc------
Q 046312 125 IKP---TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-----VYTNNNLVRFYGSCRRKRDACKVFDDM------ 190 (514)
Q Consensus 125 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~------ 190 (514)
+-. .......|...+...|++.+|..++..+...-...+ ...+...+..|...+++.+|..++.++
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 000 001124566777788888888888888754311111 245666777888888888888777765
Q ss_pred --CCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 191 --CERS--VVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDETTML----VVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 191 --~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
..++ ...|...+..+...++|.+|.+.|.+..+. ....|...+. .++.+..-.+....-..+.........
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 1111 234556666777778888887777766542 1112222111 111111112222222223333333333
Q ss_pred CCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCc
Q 046312 262 VLNCQLGTALIDMYAKC--GAVGCARLLFSRMEE 293 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~ 293 (514)
.++...|..++.+|... .+++...+.|.....
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 34566777777777654 356666666665543
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.84 E-value=0.5 Score=36.03 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=13.4
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
|.-|+.+.|+ ++.|.+..+.+.+..|++
T Consensus 84 LAvg~yklgd---Y~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 84 LTIGCYKLGE---YSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHTC---HHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhhh---HHHHHHHHHHHHhhCCCC
Confidence 3334444444 455555555555544444
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.49 Score=48.31 Aligned_cols=53 Identities=13% Similarity=-0.081 Sum_probs=48.6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 408 ASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
-+...|+ ++.|.++.+++...-|.+..+|..|+.+|.+.|+++.|.-.+..+.
T Consensus 346 FLl~K~~---~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGD---YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCc---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4566788 9999999999999999999999999999999999999999999885
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.15 E-value=1.2 Score=33.76 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhhCCCC--chHHHHHHHHHHHh
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED---GYRYFHEMEHVHGIKP--MRIHYHTMADILAR 379 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~ 379 (514)
..........+.+-|.+....|. ++..+-..+..++.++++... ++.+++++.+. -.| .....-.|.-++.+
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 33344455566666766665553 666666667778888776655 88888888763 224 33444556777889
Q ss_pred cCCHHHHHHHHHhCC-CCCC
Q 046312 380 AGHLKEAYTFIMNMP-FQPN 398 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~-~~p~ 398 (514)
.|++++|.+.++.+. ..|+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHhCCC
Confidence 999999999888875 5563
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.07 E-value=1.9 Score=30.70 Aligned_cols=88 Identities=8% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778778777776652 22222233456788999999999999999999999988865 47888889888888887
Q ss_pred HCCCCCCHHHHHH
Q 046312 223 DLGFEPDETTMLV 235 (514)
Q Consensus 223 ~~~~~p~~~t~~~ 235 (514)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 565555543
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.91 E-value=2 Score=30.67 Aligned_cols=87 Identities=7% Similarity=-0.044 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778788777776652 22222233455788999999999999999999999988865 47788888888887887
Q ss_pred HCCCCCCHHHHH
Q 046312 223 DLGFEPDETTML 234 (514)
Q Consensus 223 ~~~~~p~~~t~~ 234 (514)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 55555554
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.61 E-value=2 Score=34.23 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc-----CCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-HHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE-----INV-------WTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNY-VTF 334 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~ 334 (514)
..-++.+...|.++.|+-+.+.+.. +++ .++..+..++...|++.+|...|++.+... .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445666777788777776665442 221 245556677777888888888887765421 11111 111
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+ ........ . .....+.+.--.+..+|.+.|++++|+.+++.++
T Consensus 104 ~~~----~~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 104 PST----GNSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----cccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 100 00000000 0 1223444555557888999999999999999997
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.27 E-value=6.1 Score=35.43 Aligned_cols=169 Identities=12% Similarity=0.035 Sum_probs=93.9
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHH----HHHHHHHcCCCCCcchHHHHH
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVW----VFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll 136 (514)
..|..+..-|. +.+++++|..++..-. ..+.+.|+...|-+ +.+...+.+++++......++
T Consensus 34 Q~~Rtl~~Ry~--~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 34 QTLRTIANRYV--RSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55666777777 7788888888765532 22344566555444 355556667788877777777
Q ss_pred HHHhccCCch-HHHHHHHHHH----HhCC--CCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhC-
Q 046312 137 KACAEISGLN-EGMQVQANVT----KSGL--DSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVEN- 208 (514)
Q Consensus 137 ~~~~~~g~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~- 208 (514)
..+.....-+ .=.++++.++ +.|- .-++..+..+...|.+.|++.+|+..|-.-...|...+..++--+.+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7765533221 1233444443 2321 226677888888888999998888877422222344444444333332
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 209 --LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 209 --~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
|...++-- ..-..++ -|.-.|++..|..+++...+
T Consensus 180 ~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 180 DDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 32222211 1111122 23356777777777776543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.25 E-value=8.5 Score=41.93 Aligned_cols=162 Identities=9% Similarity=-0.016 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 169 NLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 169 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
.++..+...+..+.+.++.... +.+...--.+..++...|++++|.+.|.+... |+..+.... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~- 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR- 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH-
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc-
Confidence 3444555556666665554433 33333334455667777777777777765421 111110000 0000
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CC----HHHHHHHHHHHHHcCChHHHHHH
Q 046312 249 GKWVHLQLIERG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----IN----VWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 249 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
-+..+.... ...-..-|..++..+.+.|.++.+.++-....+ .+ ...|..++.++...|++++|...
T Consensus 884 ---~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 884 ---EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ---HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ---ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 001111111 111223455666666666666666555443321 11 12577777888888888888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 348 (514)
+-.+-....+ ...+..|+...|..|..+
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 7766554322 344556666666555543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.21 E-value=1.8 Score=30.99 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
+.-++.+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344666777777777899999999999999999999999999999999864 3345567777643
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.68 E-value=1.2 Score=34.83 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhhCCCCchH-HHHHHHHH------HHhcCCHHHHHHHHHhCC-
Q 046312 329 PNYVTFLGVLCACNHAGMV------EDGYRYFHEMEHVHGIKPMRI-HYHTMADI------LARAGHLKEAYTFIMNMP- 394 (514)
Q Consensus 329 p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~~------~~~~g~~~~A~~~~~~~~- 394 (514)
-|..+|...+....+.|+. ++.+++|++... .++|+.. .|...|.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3566777777777777887 777888888776 5566532 12222221 123467777777777663
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 395 -FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 395 -~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+-=...|-....--.++|+ ++.|.+++..++.+.|.+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCH
T ss_pred HhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcH
Confidence 11115556555566667777 7777777777777776643
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.35 E-value=8.2 Score=42.05 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------------------------CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------------------------INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
+....-.+..+|...|++++|.+.|.+... .-..-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445566777888888888888876531 011235667777777788888877
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH
Q 046312 318 LFSNMKNSSISPNY----VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 318 ~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (514)
+-+..++....-+. ..|..+..++...|++++|...+-.+... .--......|+..++..|..++-
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhhh
Confidence 77766653211111 13666777777888888887777666543 23345566676666666655443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.56 E-value=17 Score=34.59 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=90.7
Q ss_pred CCHHHHHHHhhccC-----C----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hcc
Q 046312 178 RRKRDACKVFDDMC-----E----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDETTMLVVLSAC----TEL 243 (514)
Q Consensus 178 ~~~~~A~~~~~~~~-----~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~----~~~ 243 (514)
|+++.|.+.+-.+. . ........++..|...|+|+...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 56777766654431 1 23345666777788888888777766655443 322222 22233222 222
Q ss_pred CChHHHHH--HHHHHHH--hC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----C----CHHHHHHHHHHH
Q 046312 244 GNLSLGKW--VHLQLIE--RG-TVL---NCQLGTALIDMYAKCGAVGCARLLFSRMEE-----I----NVWTWSAMILGL 306 (514)
Q Consensus 244 g~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~ 306 (514)
...+.... +.+.+.. .| +.. .......|...|...|++.+|.+++..+.. . -+..+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222111 1110000 01 111 122334566667777777777777766542 1 134555566667
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 307 AQHGYAEEALELFSNMKN----SSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777777777777766532 111222 122444455555666676666666666553
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.46 E-value=6.5 Score=40.16 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=41.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..|...|+++.|+.+-++.... .|+ -.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888753 555 7788888888888888888888888875
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.51 E-value=3.7 Score=31.20 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+.++.+. .+....|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 34566666777777899999999999999999999999999999999854 4446678777643
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.97 E-value=2.2 Score=40.06 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCce
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN-----VGLKKMKGM 473 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 473 (514)
.++..+...|+ .+.+...+..+...+|-+...+..++.+|.+.|+..+|.+.|++.++ .|+.|.+.+
T Consensus 176 ~~~~~~l~~g~---~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGR---ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667777 77777777777777787777788888888888888888888777653 476665544
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.89 E-value=6.2 Score=36.92 Aligned_cols=67 Identities=7% Similarity=-0.158 Sum_probs=39.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCchhH
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE-----RGTVLNCQL 267 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 267 (514)
.++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455556666666666666655442 34555666666666666666666666665433 366665544
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.21 E-value=8.3 Score=27.49 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333344556778889999998888888888888877644 477888888888877777
Q ss_pred CCCCCCHHHHH
Q 046312 325 SSISPNYVTFL 335 (514)
Q Consensus 325 ~g~~p~~~~~~ 335 (514)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45544443
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.19 E-value=5.1 Score=28.74 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
++.+-++.+....+.|+.......+++|.+.+++..|.++++.++.+--. ...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44555556666667777777777777777777777777777777655322 2345555443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.74 E-value=8.8 Score=27.41 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333344556778889999999988888888888877654 466777788777777776
Q ss_pred CCCCCCHHHHH
Q 046312 325 SSISPNYVTFL 335 (514)
Q Consensus 325 ~g~~p~~~~~~ 335 (514)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45544443
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.55 E-value=22 Score=30.95 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=33.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...+.|+.++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455667777776666666542 33444455566667777777777766666654
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.72 E-value=60 Score=34.11 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccC
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYV 89 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~ 89 (514)
|...++... +.++.+.+.++|....
T Consensus 233 y~~a~~~ai--~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVV--NLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 333444444 5677777777777753
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.45 E-value=33 Score=30.99 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELF----SNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+|.++..=|.+.+++++|++++..- ...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445555567777777777664431 22344556555544443 33344567777776666666655
Q ss_pred ccCc--HHHHHHHHHHHHH---hhC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 046312 343 HAGM--VEDGYRYFHEMEH---VHG--IKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 343 ~~~~--~~~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (514)
.... .+. ..+++++.+ ++| -.-+...-..+...|.+.|++.+|..-|-- ...+....+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC-
Confidence 4432 111 122222221 123 234566777888899999999999888742 223334566555544433322
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLV-IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|.+.+.|. ..+--|.-.|+...|..+++....
T Consensus 183 -----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23333333 445556677899999888777654
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.91 E-value=21 Score=28.39 Aligned_cols=58 Identities=7% Similarity=-0.089 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhcc-----CCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDM-----CERSV-------VSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~-----~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
++-.-+..+...|.++.|+-+.+.+ ..++. .++..+.+++...|++..|...|++..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3344456667777777777666654 11221 1344555666777777777777776543
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.13 E-value=21 Score=27.14 Aligned_cols=71 Identities=7% Similarity=-0.031 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC
Q 046312 327 ISPNYVTFLGVLCACNHAG---MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN 398 (514)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~ 398 (514)
-.|+..|--.+..++.++. +..+++.+++++.+. +-.-.....-.|.-++.+.|++++|.+..+.+. ..|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3555555444555555554 344677777777764 311124455566677788888888888887764 5554
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.30 E-value=25 Score=33.25 Aligned_cols=94 Identities=7% Similarity=-0.118 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE------INVWTWSAMILGLAQHGYAEEALELFSNMKN---SSISPNYVTF--L 335 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--~ 335 (514)
+...+.+.|.+.|++++|.+.|.++.+ .-...+-..++.+...+++..+...+.+... .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777777777777777777653 2245566667777777777777777776643 2222222211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112233456666666666665553
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.11 E-value=25 Score=27.48 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=55.9
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 384 KEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL--EPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
+.+...|..-. .+.|..-....+.-.-...+ ...++..+... +..-+..|...+..+...|++++|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d------p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD------LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC------HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC------HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555665554 55666666555554444444 78888887654 45545678899999999999999999999
Q ss_pred HHHhCCCCC
Q 046312 461 FMKNVGLKK 469 (514)
Q Consensus 461 ~m~~~~~~~ 469 (514)
.-.+++-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 888777654
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.03 E-value=15 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
+..+-++.+....+.|+.......+++|.+.+|+..|.++++-++.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555556666778888888888888888888888888887776653 223445655543
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.67 E-value=34 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.310 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHHHcC
Q 046312 294 INVWTWSAMILGLAQHG 310 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~ 310 (514)
++...-...+.++.+.+
T Consensus 155 ~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIG 171 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333334444333
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.47 E-value=73 Score=31.77 Aligned_cols=380 Identities=9% Similarity=-0.073 Sum_probs=190.4
Q ss_pred HHHHHHHHhC-CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 046312 46 QIHAQIQVSG-LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRG 124 (514)
Q Consensus 46 ~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 124 (514)
++...+.++. .+.....-+.-+..++ +.+++......+.. + ..+...-.....+....|+..+|......+-..|
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~--~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELA--RREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHH--hCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4555555543 2223344455666666 77888888886665 4 4455555566677777888877877777766654
Q ss_pred CCCCcchHHHHHHHHhccCCchHHH--HHHHHHHHhC-----------CCCCcc-hHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGM--QVQANVTKSG-----------LDSDVY-TNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~--~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
......+..++..+.+.|.+.... +=++.+...| ++++.. ....++..+.+ ...+.......
T Consensus 133 -~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~ 208 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT 208 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS
T ss_pred -CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc
Confidence 344556777888777766654422 2222222222 111111 11222222221 12222222221
Q ss_pred CCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 191 CERSVV---SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTML----VVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 191 ~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.++.. .+...+.-+.+ .+.+.|...|....+.. ..+..... .+.......+...++...+....... .
T Consensus 209 -~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~ 283 (618)
T 1qsa_A 209 -GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred -CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C
Confidence 11111 12222333333 37788999888886543 22333222 22223334443455555555544433 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+.....-.+....+.|+++.|...|+.|... .....--+..++...|+.++|..+|+.+... .+ -|..+.
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA-- 356 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA-- 356 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--
Confidence 3333444445556779999999999998762 2233334556777889999999999988742 12 233222
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCc-h---H--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPM-R---I--HYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDA 414 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~---~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (514)
..+.|..-.. ... ...+. . . .--.-+..+...|....|...+..+....+......+.......|.
T Consensus 357 a~~Lg~~~~~-----~~~---~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 357 AQRIGEEYEL-----KID---KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQW 428 (618)
T ss_dssp HHHTTCCCCC-----CCC---CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCC-----CCC---CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Confidence 2222211000 000 00010 0 0 0112244567788888888777666423344434444444556666
Q ss_pred CCcchHHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCHHHHH
Q 046312 415 KYQDGVGNEVRRRLLELEP---RGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
.+.+..........+. .-+..|...+..+.+.-.++.+.
T Consensus 429 ---~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 429 ---WDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp ---HHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred ---hHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 5555444433222110 01224555555555554444433
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.32 E-value=56 Score=30.38 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=109.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc------CCHHHHHH--
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERGTV-----LNCQLGTALIDMYAKCGAVGCARLLFSRMEE------INVWTWSA-- 301 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~-- 301 (514)
.+...|...|++.+|..++..+.+.--. .-..++..-+..|...+++.++...+..... +++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3555566666666666666665553111 1133445556667777777777766665532 22222111
Q ss_pred --HHHHHH-HcCChHHHHHHHHHHHHC--C-CCCC---HHHHHHHHHHHhccCcHHHHHHHHH-HHHHhhCCCCchHHHH
Q 046312 302 --MILGLA-QHGYAEEALELFSNMKNS--S-ISPN---YVTFLGVLCACNHAGMVEDGYRYFH-EMEHVHGIKPMRIHYH 371 (514)
Q Consensus 302 --li~~~~-~~~~~~~a~~~~~~m~~~--g-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~p~~~~~~ 371 (514)
-...+. ..+++..|...|-+..+. . ..|. ...|..+ .+.....+ .+...++. .....+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~r-~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQS-DDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTCG-GGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCCH-HHHHHHhcccccccc-CCccHHHHH
Confidence 122345 678888888877776431 0 0111 1223322 23332222 22222221 222212 356666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.++.+| ..+++.+...+++... +..|......+-.-+.. --...+..+ ..|-..-.+..++..+.-
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~--------Ir~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT--------MLEQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH--------HHHHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--------HHHHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 777765 5678888888887764 44455432211111100 011222222 234434455566666543
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 046312 450 GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (514)
..++++..+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 68899999999997775
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.00 E-value=26 Score=27.83 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=53.1
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 384 KEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL--EPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
+++...|..-. .+.|..-....+.-.-..++ ...++..+... +..-+..|...+..+...|++.+|.++|+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~------p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE------PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC------HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC------HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454443 55566655555544444455 77777777654 44545567788888899999999999998
Q ss_pred HHHhCCCCC
Q 046312 461 FMKNVGLKK 469 (514)
Q Consensus 461 ~m~~~~~~~ 469 (514)
.-.+.+-.|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Confidence 888777654
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.70 E-value=16 Score=34.63 Aligned_cols=28 Identities=7% Similarity=0.028 Sum_probs=15.3
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHh
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKS 158 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 158 (514)
+...+...+.+.|+++.|.+.+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~ 160 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK 160 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.22 E-value=20 Score=29.56 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSD 163 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 163 (514)
.|-..++.+ ..++..++.++|..|...||--... -|......+...|++.+|.++|+..++.+-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455555554 2334568888888888887765554 466777777788888888888888887765553
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.02 E-value=36 Score=28.06 Aligned_cols=50 Identities=2% Similarity=-0.027 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 419 GVGNEVRRRLLE--LEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 419 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
.....++..+.. ++..-+..|...+..+...|++++|.++|+.-.+++-.
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 345555555544 33333445556666666666666666666665555543
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.88 E-value=23 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=27.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQL--GTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 289 (514)
..++......+.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 44554555566666666665554321 1233445556677777777766
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.04 E-value=32 Score=29.67 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=8.3
Q ss_pred CCCChHHHHHHHccc
Q 046312 74 SSKNLTYARSILCNY 88 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~ 88 (514)
+.|+++....+++.-
T Consensus 14 ~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGG 28 (285)
T ss_dssp HTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcC
Confidence 356666555555543
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.04 E-value=58 Score=28.31 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHD 413 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~ 413 (514)
....+.|+++.++..+..-++. -+-|...-..|++.+|-.|+|++|.+-++... ..|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3456889999999998888874 35567777889999999999999988887764 3344 3455555543
Q ss_pred CCCcchHHHHHHHHHHhcC-----CCCCchHH-HHHHHHH--hcCCHHHHHHHHHHHHhC
Q 046312 414 AKYQDGVGNEVRRRLLELE-----PRGSQNLV-IVANKYA--EVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~-----p~~~~~~~-~l~~~~~--~~g~~~~A~~~~~~m~~~ 465 (514)
+..-..+..-+ +.++..+. .|+.+.. ..|+.++|.++-.+..+.
T Consensus 78 --------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 --------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22223333211 23344454 5555554 569999999999988654
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.70 E-value=48 Score=27.23 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q 046312 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLA 307 (514)
Q Consensus 228 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 307 (514)
++...-...+.++.+.++.+....+.+.+ -.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKAL----KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALG 137 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444455555555433222222221 13445555555566666665544444444444566665556666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 308 QHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+.|..+ +...+..+.. .++...-...+.++.+.+. ..+...+..+.+
T Consensus 138 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 138 EIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 665533 3444444442 3455555555666666555 334444444443
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.93 E-value=52 Score=26.69 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=36.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.++. ++...+..+.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444555555555544333344444445554444455555555442 23333333332 234444444555555
Q ss_pred ccCc
Q 046312 343 HAGM 346 (514)
Q Consensus 343 ~~~~ 346 (514)
..|.
T Consensus 164 ~~~~ 167 (201)
T 3ltj_A 164 EIGG 167 (201)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5544
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.44 E-value=34 Score=28.75 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 395 FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL--EPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
.+.|..-....+.-.-...+ ...++..+... +-.-...|...+..+...|++.+|.++|+.-.+++-.
T Consensus 113 YknD~RyLklWl~Ya~~~~~------p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNYIDE------PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp GTTCHHHHHHHHHHHTTCSC------HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred ccCCHHHHHHHHHHHHccCC------HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455444444433333334 66666666543 3444455667777777777777777777776665543
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.10 E-value=97 Score=28.78 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE----IN-----VWTWSAMILGLAQHGYAEEALELFSNMKNS--SISPNYVTFLGV 337 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l 337 (514)
..++..|...|++.+|..++..+.+ .| ...+..-+..|...+++.++...+...... .+.+++..-..+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3688999999999999988887764 12 245666778899999999999999887652 233444332222
Q ss_pred ----HHHHh-ccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHH-hC--C-CCCCHHHHH
Q 046312 338 ----LCACN-HAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEAYTFIM-NM--P-FQPNPIVLR 403 (514)
Q Consensus 338 ----l~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~-~~--~-~~p~~~~~~ 403 (514)
...+. ..+++..|...|-+..+.+.-.-+ ...|..|... -.++..+...++. .. . ..|+...+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHHHH
Confidence 12345 789999998888877654432221 1223322222 2333333333221 10 1 346666666
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
.++.++. .++ +.....+++..
T Consensus 261 ~L~~a~~-~~d---l~~f~~iL~~~ 281 (394)
T 3txn_A 261 SVAEASH-KRS---LADFQAALKEY 281 (394)
T ss_dssp HHHHHHH-TTC---HHHHHHHHHHS
T ss_pred HHHHHHH-hCC---HHHHHHHHHHH
Confidence 6766654 456 55555555543
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.00 E-value=50 Score=25.46 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC
Q 046312 328 SPNYVTFLGVLCACNHAGM---VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN 398 (514)
Q Consensus 328 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~ 398 (514)
.|+..+--.+..++.++.+ ..++..+++++.+. +-.-.....-.|.-++.+.|++++|.+..+.+. ..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554455556655543 44667777777764 221234444456667778888888877777764 5554
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.47 E-value=27 Score=27.70 Aligned_cols=54 Identities=7% Similarity=0.016 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc
Q 046312 111 REAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDV 164 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 164 (514)
+.+.++|..|..+||-.... -|......+...|++.+|.++|+..++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44778888888888766555 4677777788889999999999888888766643
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.93 E-value=56 Score=27.25 Aligned_cols=84 Identities=7% Similarity=-0.048 Sum_probs=39.7
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCC
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEFT--YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCR 178 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~ 178 (514)
..++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 33456676666666665555554444321 112333444455543 3344445554443221 112333445566
Q ss_pred CHHHHHHHhhcc
Q 046312 179 RKRDACKVFDDM 190 (514)
Q Consensus 179 ~~~~A~~~~~~~ 190 (514)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666655555543
No 285
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.62 E-value=63 Score=26.17 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=64.6
Q ss_pred ccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 046312 189 DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 189 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
.+..++...-...+.++.+.+..+. ...+..+.. .++...-...+.++.+.++.+....+.+ +. -.++..+-
T Consensus 53 ~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr 124 (201)
T 3ltj_A 53 ALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVR 124 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---cCCCHHHH
Confidence 3334444444444555555554332 233333332 3455555556666666665443333322 22 13455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
...+.++.+.|+.+....+...+.+++...-...+.++.+.|. .++...+..+..
T Consensus 125 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 125 IAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 6666666666665444444444555666666666666666665 345555555554
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.80 E-value=1.5e+02 Score=29.81 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC
Q 046312 377 LARAGHLKEAYTFIMNMPFQPN 398 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~p~ 398 (514)
+...|+++.|++.++++.+-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999875553
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.51 E-value=67 Score=25.10 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 046312 111 REAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSD 163 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 163 (514)
+++.++|..|..+||-.... -|......+...|++.+|.++++..++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45888888888887766554 467777778888888888888888887765553
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.59 E-value=1.1e+02 Score=28.05 Aligned_cols=67 Identities=6% Similarity=0.083 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhhCCCCc
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG--MVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~ 366 (514)
....++.-|...|+.++|.+.++++....+. .......+..+..+.+ ..+....++..+... |+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCH
Confidence 3567788888889999999999888632211 1334455555555543 345677777777765 44443
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=54.67 E-value=65 Score=28.80 Aligned_cols=83 Identities=8% Similarity=-0.015 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-c---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 272 IDMYAKCGAVGCARLLFSRME-E---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
+...+..|..+.+..+++.-. . .|..-++.|. .-++.|+.+ +.+.+++.|..++..+ .+...++.|+.
T Consensus 243 L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~ 314 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDH 314 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCH
Confidence 344456666666666654321 1 1211122222 234556654 3444566677776554 23334455665
Q ss_pred HHHHHHHHHHHHhhCCCCch
Q 046312 348 EDGYRYFHEMEHVHGIKPMR 367 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~ 367 (514)
+- .+.+.+. |-.||.
T Consensus 315 ~i----v~~Ll~~-GA~~d~ 329 (337)
T 4g8k_A 315 SL----VKVLLSH-GAKEDF 329 (337)
T ss_dssp HH----HHHHHHT-TCCC--
T ss_pred HH----HHHHHHC-cCCCCC
Confidence 53 3444443 666664
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.50 E-value=63 Score=26.95 Aligned_cols=83 Identities=7% Similarity=-0.037 Sum_probs=45.9
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCC
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLW 210 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 210 (514)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +..-++.+ ...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCC
Confidence 4455677888888888887777775554321 123445556677777777666654322 22222222 23345566
Q ss_pred hhHHHHHHH
Q 046312 211 LGEAVGYFV 219 (514)
Q Consensus 211 ~~~a~~~~~ 219 (514)
.+-+..+++
T Consensus 92 ~~~~~~Ll~ 100 (241)
T 1k1a_A 92 PTCLRALLD 100 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.85 E-value=54 Score=26.42 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=10.0
Q ss_pred CCCChHHHHHHHccc
Q 046312 74 SSKNLTYARSILCNY 88 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~ 88 (514)
..|+.+....++..-
T Consensus 14 ~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 14 NQRDTKKVKEILQDT 28 (201)
T ss_dssp HTTCHHHHHHHHTCT
T ss_pred HhccHHHHHHHHHcC
Confidence 367777777777654
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.82 E-value=45 Score=27.78 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=6.7
Q ss_pred CCChHHHHHHHcc
Q 046312 75 SKNLTYARSILCN 87 (514)
Q Consensus 75 ~g~~~~A~~~~~~ 87 (514)
.|+++....+++.
T Consensus 19 ~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 19 YGIYERCRELVEA 31 (240)
T ss_dssp TTCHHHHHHHHHT
T ss_pred cCChHHHHHHHHc
Confidence 4555555555543
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.17 E-value=36 Score=29.08 Aligned_cols=87 Identities=9% Similarity=-0.085 Sum_probs=46.0
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcc-------hHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CC-CC
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEF-------TYPFVLKACA--EISGLNEGMQVQANVTKSG---------LD-SD 163 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~-~~ 163 (514)
..++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.....+ +. .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3345677777777777766666555533 2233443332 5677777766666543321 00 01
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 164 VYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 164 ~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
..- .+.+...+..|+.+-+..+++.-
T Consensus 91 ~~g-~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 91 YRG-QTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp EES-BCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCC-CCHHHHHHHcCCHHHHHHHHhCC
Confidence 111 22334445567777666666654
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.06 E-value=43 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKR 122 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~ 122 (514)
--++.+....++++|++++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346777778888888888887654
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.43 E-value=63 Score=27.49 Aligned_cols=26 Identities=19% Similarity=-0.055 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSR 290 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (514)
.......+..+.+.|+.++|.++|-+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 33344444555555555555555433
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.65 E-value=52 Score=26.54 Aligned_cols=151 Identities=10% Similarity=0.054 Sum_probs=70.6
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKR 181 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 181 (514)
.+..|+.+....++..-...--..|...++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677777666664321000112222233 344445667654 4455556676554332 123344556778888
Q ss_pred HHHHHhhccC-C---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHhccCChHHHHHHH
Q 046312 182 DACKVFDDMC-E---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEP---DETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 182 ~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
-+..+++.-. . .+..-.+.+ ...+..|+.+-+..++ +.| ..+ |..-.+.+..++........-.++.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 8877775431 1 222222222 2334556665444433 333 222 2222333333333222233345666
Q ss_pred HHHHHhCCCCc
Q 046312 254 LQLIERGTVLN 264 (514)
Q Consensus 254 ~~~~~~~~~~~ 264 (514)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 67777776554
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.98 E-value=42 Score=29.38 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=6.1
Q ss_pred hccCChHHHHHHHH
Q 046312 241 TELGNLSLGKWVHL 254 (514)
Q Consensus 241 ~~~g~~~~a~~~~~ 254 (514)
+..|+.+-+..+++
T Consensus 169 ~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 169 IKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 34444444444433
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.47 E-value=95 Score=24.21 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGY--AEEALELFSNMKNSSISPN 330 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 330 (514)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567777888888888888888887653 2233334444444322 4557777777776665443
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.69 E-value=69 Score=29.97 Aligned_cols=289 Identities=14% Similarity=0.078 Sum_probs=143.8
Q ss_pred CCCChHHHHHHHcccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCCchHH
Q 046312 74 SSKNLTYARSILCNYVNDSVP---IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF--TYPFVLKACAEISGLNEG 148 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a 148 (514)
..|+.+-+..+++.-. .++. ...+. +...+..|+.+-+.-+ .+.|..++.. .-.+.+...+..|+.+-
T Consensus 23 ~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~-L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~- 95 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGA-SPNVSNVKVETP-LHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHTNM- 95 (437)
T ss_dssp HHTCHHHHHHHHHTTC-CSCCSSSCCCCH-HHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCHHH-
T ss_pred HCCCHHHHHHHHHcCC-CCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHHH-
Confidence 5799999998888754 3332 23333 4444556765544443 4445444332 12234455566777654
Q ss_pred HHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 149 MQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
.+.+.+.|..++... -.+.+...+..|+.+.+..+++.-... +...++. +...+..|+.+-+ +.+.+
T Consensus 96 ---v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~ 167 (437)
T 1n11_A 96 ---VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVA----ELLLE 167 (437)
T ss_dssp ---HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----HHHHH
T ss_pred ---HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHH----HHHHh
Confidence 444555665554321 123445556778888888888765322 2222233 3334556766543 44455
Q ss_pred CCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHhcCcC---CH
Q 046312 224 LGFEPDETT--MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG--TALIDMYAKCGAVGCARLLFSRMEEI---NV 296 (514)
Q Consensus 224 ~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 296 (514)
.|..++... -.+.+...+..|+.+- ++.+.+.|..++.... .+.+...+..|+.+-+..+++.-..+ +.
T Consensus 168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 243 (437)
T 1n11_A 168 RDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243 (437)
T ss_dssp TTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 565544321 1123344455666544 4445555554433211 22344556778888777777654332 21
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH---HH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY---VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI---HY 370 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~ 370 (514)
.-.+. +...+..|+.+- ++.+.+.|..++. ...+ .+...+..|..+-+..++ +. |..++.. -.
T Consensus 244 ~g~t~-L~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~-g~~~~~~~~~g~ 312 (437)
T 1n11_A 244 QGVTP-LHLAAQEGHAEM----VALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLI----KH-GVMVDATTRMGY 312 (437)
T ss_dssp TCCCH-HHHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH----HH-TCCTTCCCSSCC
T ss_pred CCCCH-HHHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----hC-CccCCCCCCCCC
Confidence 11122 233445666543 3344455544432 1122 333344566665444433 32 5444321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 046312 371 HTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+ .+...++.|+.+-+..+++.-
T Consensus 313 t-~L~~A~~~g~~~~v~~Ll~~g 334 (437)
T 1n11_A 313 T-PLHVASHYGNIKLVKFLLQHQ 334 (437)
T ss_dssp C-HHHHHHHSSCSHHHHHHHHTT
T ss_pred C-HHHHHHHcCcHHHHHHHHhcC
Confidence 2 233345678877776666654
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.00 E-value=1e+02 Score=23.21 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCH---HHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINV---WTWSAMILGLAQHGY--AEEALELFSNMKNSSISPN 330 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 330 (514)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35677778888888888888888876522 233334444444332 3567777777777665444
No 301
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.32 E-value=69 Score=20.26 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCC
Q 046312 420 VGNEVRRRLLELEPRGSQNLVIVANKY-AEVGMWEKVSNVRRFMKNVGLKKMK 471 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~~~~ 471 (514)
..++.++.+.++.|+ .+. ..+-.++ ...|+.+.|+..+-.|...+..+..
T Consensus 8 ~~ee~l~~L~emFP~-ld~-~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN-MDQ-EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp SCHHHHHHHHHHCSS-SCH-HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCHHHHHHHHHHCCC-CCH-HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 345667777888886 332 3333444 4568899999999999877666543
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.28 E-value=2.6e+02 Score=29.57 Aligned_cols=128 Identities=10% Similarity=-0.077 Sum_probs=70.0
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 169 NLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 169 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
.++..+...|..+-|.++...++. +...--.+..+|...|++++|...|++.- .|+..+...... .+.
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhh
Confidence 366677778888888776665554 44443456788899999999999997753 233221110000 000
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----cCCH----HHHHHHHHHHHHcC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME----EINV----WTWSAMILGLAQHG 310 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~ 310 (514)
...++... + .......-|..++..+-+.+.++.+.++-+... ..|. ..|..++++.+..|
T Consensus 883 ~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111100 0 001123366777777777887777766555433 2222 35666666665543
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.28 E-value=2.6e+02 Score=26.97 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH-------HHH-HHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEINV-------WTW-SAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~-~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
..++|.+++.|...+.++.|..+..+..-|.. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667788888888888888888887764321 122 23455677788999999988887764
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.28 E-value=1.5e+02 Score=24.81 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc
Q 046312 313 EEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 366 (514)
+....+|..|...|+--. ..-|......+...|++.+|..+|+.-.+. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 466678888888776554 444666677777788888888888887775 66664
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.58 E-value=71 Score=28.49 Aligned_cols=57 Identities=5% Similarity=-0.146 Sum_probs=32.7
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCCCCCcc--cHHHHHHHHHhCCCc--hHHHHHHHHHHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVNDSVPI--PWNNLIRGYAWSDRP--REAVWVFIDMKR 122 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~--~~a~~~~~~m~~ 122 (514)
...++.-|- ..|+.++|...++++. .|.-. .-..+|..-...++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf--~~~d~~Ea~~~l~el~-~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYF--EHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHH--HHCCHHHHHHHHHTTC-CGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHhC-CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 345666665 6899999999999987 55421 122233333333322 235556666653
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.51 E-value=2.2e+02 Score=25.38 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 382 HLKEAYTFIMNM---PFQPNP--IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 382 ~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
+..+.+++---+ ...|.. .+...-+..+.+.++ +..|..+.+++++++|... ..++|.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KN---y~tAa~fArrLLel~p~~~--------------~a~qAr 247 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKN---FLQASYFAGEFLKIISSGP--------------RAEQAR 247 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSSH--------------HHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCCHH--------------HHHHHH
Confidence 344444444443 355543 556777788899999 9999999999999998632 466788
Q ss_pred HHHHHHHhCC
Q 046312 457 NVRRFMKNVG 466 (514)
Q Consensus 457 ~~~~~m~~~~ 466 (514)
+++..-.+.+
T Consensus 248 kil~~ce~~~ 257 (325)
T 3mv2_A 248 KIKNKADSMA 257 (325)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHhcCC
Confidence 8888776543
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.36 E-value=57 Score=27.07 Aligned_cols=106 Identities=9% Similarity=0.102 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCCChH--HHHHHHHhcccCCCCChHHHHHHHcccCCCCCcc----cHHHHHHHHHhCCCchHHHHHHHH
Q 046312 46 QIHAQIQVSGLQNDAQ--ILKELVRFCTLSSSKNLTYARSILCNYVNDSVPI----PWNNLIRGYAWSDRPREAVWVFID 119 (514)
Q Consensus 46 ~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~ 119 (514)
.+...+.+.|..++.. .....+...+ +.|+.+-+..+++.-. ..+.. .++.+ ...+..|+.+ +++.
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~L-~~A~~~~~~~----~v~~ 94 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAA--INNRIDLVKYYISKGA-IVDQLGGDLNSTPL-HWATRQGHLS----MVVQ 94 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTC-CTTCCBTTTTBCHH-HHHHHHTCHH----HHHH
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHH--HhCCHHHHHHHHHcCC-cchhhcCCcCCChh-HHHHHcCCHH----HHHH
Confidence 3445555677655432 1222344445 5788888888887654 22211 22333 3334445543 3344
Q ss_pred HHHcCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCC
Q 046312 120 MKRRGIKPTEFT--YPFVLKACAEISGLNEGMQVQANVTKSGLDSD 163 (514)
Q Consensus 120 m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 163 (514)
+.+.|..++... -...+...+..|+.+ +++.+.+.|..++
T Consensus 95 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 445555554321 112333444556654 4444445554443
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.18 E-value=73 Score=24.52 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455555544332 23344444445555666666665554444444444455555555543
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.10 E-value=1.5e+02 Score=23.12 Aligned_cols=62 Identities=8% Similarity=-0.000 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCCCC---hhhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMCERS---VVSWNVIITVCVENLW--LGEAVGYFVKMKDLGFEPD 229 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 229 (514)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 445666666677777777777765442 1223333333333222 3455666666666654433
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.57 E-value=35 Score=24.23 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHH
Q 046312 46 QIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVW 115 (514)
Q Consensus 46 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 115 (514)
.+++.+.+.|+- +...... |.... ...+.+.|+++++.++ .+.+.+|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~vl-t~~~~e~-I~~~~--~~t~~~~ar~Lld~L~-~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIED-IQRAG--SGSRRDQARQLIIDLE-TRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHH-HHTST--TCCHHHHHHHHHHHHT-TSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHH-HHhcc--CCChHHHHHHHHHHHH-HcChHHHHHHHHHHHHcCcHHHHHH
Confidence 477777777743 2222222 22221 1257899999999999 8889999999999987776655543
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.29 E-value=1.8e+02 Score=23.87 Aligned_cols=44 Identities=11% Similarity=-0.042 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHcccCC---CCCcccHHHHHHHHHhCCCchHHHHHHH
Q 046312 74 SSKNLTYARSILCNYVN---DSVPIPWNNLIRGYAWSDRPREAVWVFI 118 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 118 (514)
+.|+.+....+++.-.. ..|..-++.|..+ +..|+.+-+..+++
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHIA-ALYDNLEAAMVLME 58 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 46777777777765211 2233333343333 34566554444444
No 312
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.13 E-value=1e+02 Score=20.65 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 119 DMKRRGIKPTEFTYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556676665544 34555665554 556677788777766544555555555666655554
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.42 E-value=1.9e+02 Score=23.69 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 046312 198 WNVIITVCV---ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN-----LSLGKWVHLQLIERGT 261 (514)
Q Consensus 198 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 261 (514)
+..+|+++. +-.+.+.|+-.+-+|.+.| .|....-..++.+.-..|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334555554 4578999999999999998 6666666666666555443 2234444444445553
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.93 E-value=2.5e+02 Score=24.89 Aligned_cols=67 Identities=6% Similarity=0.077 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHHhhCCCCc
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM--VEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~p~ 366 (514)
....++.-|...|+.++|.+.++++...... .......+..+..+.++ .+.+..++..+.+. |+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 3456788888899999999999988632111 12344455555655433 45677788888765 54443
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.92 E-value=2.2e+02 Score=25.70 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCCC
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMCER 193 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~~~ 193 (514)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34555566666666666666666544
No 316
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.41 E-value=1.2e+02 Score=21.05 Aligned_cols=63 Identities=6% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHH
Q 046312 148 GMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
...+++.+.+.|+- +..-+..+- ......++|..+++.+..++..+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 44566666666632 222222222 2356778888888888888888888888888777754443
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.34 E-value=52 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=29.2
Q ss_pred CCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHH
Q 046312 178 RRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAV 215 (514)
Q Consensus 178 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 215 (514)
...++|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665553
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.70 E-value=2e+02 Score=23.45 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=44.8
Q ss_pred CCCChHHHHHHHcccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc---hHHHHHHHHhccCCchH
Q 046312 74 SSKNLTYARSILCNYVN---DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF---TYPFVLKACAEISGLNE 147 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~ 147 (514)
+.|+++....+++.-+. ..+...++.|..+ +..|+.+ +++.+.+.|..++.. .++ .+...+..|+.+
T Consensus 15 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~- 87 (231)
T 3aji_A 15 YSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWS-PLHIAASAGXDE- 87 (231)
T ss_dssp HHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHH-
T ss_pred HhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCC-HHHHHHHcCHHH-
Confidence 46677776666654321 2233333333333 3344433 333344445444332 222 223334445543
Q ss_pred HHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhc
Q 046312 148 GMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~ 189 (514)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 88 ---~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 88 ---IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp ---HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3334444554433211 11223334455565555555544
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.05 E-value=2.1e+02 Score=23.41 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHHHHHH---hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 199 NVIITVCV---ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG 244 (514)
Q Consensus 199 ~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 244 (514)
..+|+++. +-.+.+.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 45789999999999999887776666666666654444
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.91 E-value=87 Score=28.36 Aligned_cols=14 Identities=7% Similarity=-0.275 Sum_probs=6.1
Q ss_pred hCCChhHHHHHHHH
Q 046312 207 ENLWLGEAVGYFVK 220 (514)
Q Consensus 207 ~~~~~~~a~~~~~~ 220 (514)
..|+.+-+..+++.
T Consensus 93 ~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 93 MANKTDLVVALVEG 106 (364)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 34444444444443
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.89 E-value=2.1e+02 Score=23.36 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=38.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCC
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCR 178 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~ 178 (514)
+...++.|+.+....+++.-...-..+|....+. +...+..|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 4455667777777776655322111223322333 333445565543 344445564443321 112233334455
Q ss_pred CHHHHHHHhhc
Q 046312 179 RKRDACKVFDD 189 (514)
Q Consensus 179 ~~~~A~~~~~~ 189 (514)
+.+-+..+++.
T Consensus 85 ~~~~v~~Ll~~ 95 (231)
T 3aji_A 85 XDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 65555555544
No 322
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.28 E-value=1e+02 Score=26.72 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHHh
Q 046312 379 RAGHLKEAYTFIMN 392 (514)
Q Consensus 379 ~~g~~~~A~~~~~~ 392 (514)
..|+.+-+..+++.
T Consensus 138 ~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 138 MLNDVSIVSYFLSE 151 (285)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HcCCHHHHHHHHhC
Confidence 34444444444433
No 323
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.12 E-value=3.1e+02 Score=25.01 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGY--AEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
..+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 34788899999999999999999998764 2334444445444333 45677888888877765544433
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.93 E-value=1.2e+02 Score=20.25 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 219 VKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 219 ~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776644 34555665554 456677788888777666666666666666666654
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.91 E-value=1.8e+02 Score=22.43 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 219 VKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 219 ~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677877776543 4455555555 6677888888888887777777766667777766644
No 326
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.60 E-value=1.1e+02 Score=20.53 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=23.7
Q ss_pred HHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 046312 82 RSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 120 (514)
..++.+++. .|++.+|+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345666665 567777777766655554455566555544
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.44 E-value=1.7e+02 Score=21.98 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 220 KMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 220 ~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35667777765443 3445555555 5667888888888877666766666666666665543
No 328
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.75 E-value=2.6e+02 Score=23.82 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 046312 293 EINVWTWSAMILGLAQHGY 311 (514)
Q Consensus 293 ~~~~~~~~~li~~~~~~~~ 311 (514)
+++...-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3444444444555555554
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.75 E-value=96 Score=24.44 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=45.6
Q ss_pred hHHHHHHHH-HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh--CCCCCcchHHHHHHHHHcCCCHH
Q 046312 111 REAVWVFID-MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS--GLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 111 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
+.+++-+.+ +++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 445554444 455777775543 45566777777778888888888877 65556655555667777777643
No 330
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.73 E-value=1.9e+02 Score=22.10 Aligned_cols=14 Identities=0% Similarity=0.088 Sum_probs=9.4
Q ss_pred CCCChHHHHHHHcc
Q 046312 74 SSKNLTYARSILCN 87 (514)
Q Consensus 74 ~~g~~~~A~~~~~~ 87 (514)
+.|+.+....+++.
T Consensus 17 ~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 17 KAGDVETVKKLCTV 30 (165)
T ss_dssp HHTCHHHHHHHCCT
T ss_pred HhCCHHHHHHHHHc
Confidence 36777777777664
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.49 E-value=1.4e+02 Score=23.05 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 118 IDMKRRGIKPTEFTYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
+.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 346677777766544 3455666665 67778899998888765556666555667777776543
No 332
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=29.41 E-value=3.1e+02 Score=24.48 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhc-
Q 046312 115 WVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDD- 189 (514)
Q Consensus 115 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~- 189 (514)
++++.+.+.|+.|...++..++..+++.=.++.+..+|+.+...|...-..+.-+++..+.. ..++++...++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 046312 190 MCERSVVSWNVIITVCVENLWLGEAVGYFVK 220 (514)
Q Consensus 190 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (514)
++..+......++.-........+..++=.+
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~e~e 319 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAYEVE 319 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHHH
No 333
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.07 E-value=1.8e+02 Score=21.75 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCCCCh---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMCERSV---VSWNVIITVCVENLW--LGEAVGYFVKMKDLGFEPD 229 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 229 (514)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4456666677777777777777754421 223333334433322 3456666766666664433
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.33 E-value=1.2e+02 Score=23.54 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 118 IDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
+.+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345666766555433 345555555667778888888877765556655555667777776543
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.22 E-value=2.5e+02 Score=23.18 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 046312 194 SVVSWNVIITVCVE---NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN-----LSLGKWVHLQLIERGT 261 (514)
Q Consensus 194 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 261 (514)
+...+..+|+++.| -.+++.|+-.+-+|++.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444455666544 57899999999999999877777666666666654443 2334444555555553
No 336
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.78 E-value=52 Score=16.00 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHHhhh
Q 046312 494 ELAGIYQILETLNLHMKV 511 (514)
Q Consensus 494 ~~~~a~~~~~~m~~~~~~ 511 (514)
..++-+.-++.+++++++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345566666666666654
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.80 E-value=1.5e+02 Score=22.61 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=33.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 220 KMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 220 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34555666554332 33334434445556666777766666555666655666666666643
No 338
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.50 E-value=3.3e+02 Score=23.94 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhc
Q 046312 149 MQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~ 189 (514)
..+.+.+.+.|..++... -.+-+...+..|..+.+..+++.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 344455566665544321 12233445566666666666543
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.17 E-value=97 Score=23.26 Aligned_cols=44 Identities=20% Similarity=0.051 Sum_probs=20.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEIS 143 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 143 (514)
++..+...+.+-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555443334444333444444444
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.89 E-value=4.6e+02 Score=27.70 Aligned_cols=107 Identities=10% Similarity=-0.015 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--------------------C-
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS--------------------P- 329 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------------p- 329 (514)
++..+...|.++-|.++...... ++..--.+..+|...|++++|.++|++.-. |+. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 56667777888877766655554 433334566778888888888888876532 211 1
Q ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcC
Q 046312 330 --NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAG 381 (514)
Q Consensus 330 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g 381 (514)
...-|..++..+.+.+.++.+.++-+...+. ..++ ...|..+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~--~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADAS--KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCCccchHHHHHHHHHHHhhCC
Confidence 1125888999999999999999998888863 2222 236777787777655
No 341
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.75 E-value=2.6e+02 Score=23.28 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 046312 340 ACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~ 358 (514)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 4555566666666655554
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.47 E-value=69 Score=27.20 Aligned_cols=54 Identities=7% Similarity=-0.199 Sum_probs=29.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHh--ccCChHHHHHHHHHHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDETT-------MLVVLSACT--ELGNLSLGKWVHLQLI 257 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~~ 257 (514)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34456777777777776666655554322 233333332 5566666666665543
No 343
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.44 E-value=2.8e+02 Score=22.71 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=42.5
Q ss_pred HHHHHHhh--cChhHHHHHHHHHHH--hCCCCChHHHHHHHHhcc---cCCCC--------------ChHHHHHHHcccC
Q 046312 31 CLSFLKLC--CSKKHLYQIHAQIQV--SGLQNDAQILKELVRFCT---LSSSK--------------NLTYARSILCNYV 89 (514)
Q Consensus 31 ~~~ll~~~--~~~~~~~~~~~~~~~--~g~~~~~~~~~~ll~~~~---~~~~g--------------~~~~A~~~~~~~~ 89 (514)
|..++++. ++.++++++.+.|.. .|..+-.......+..|. +...| -++.|+.+|+.+.
T Consensus 26 f~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~ 105 (211)
T 3bqo_A 26 CLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIE 105 (211)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHH
Confidence 34444443 466777777776654 455443333222322221 00111 2456677777665
Q ss_pred CCCCccc-------HHHHHHHHHhCCCchHHHHHHHHH
Q 046312 90 NDSVPIP-------WNNLIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 90 ~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m 120 (514)
...+... -...+..|.+.|.+++|.++|++.
T Consensus 106 ~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 106 KEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3222110 112334556666666666666654
No 344
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.39 E-value=2.2e+02 Score=21.91 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 220 KMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 220 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3555666555432 234444444455666777777777766666666666666666666643
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.35 E-value=3.1e+02 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCC
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEIN 295 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 295 (514)
...++.-|...|+.++|.+.++++..|.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 3567777778888888888888887653
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.26 E-value=1.4e+02 Score=24.73 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=11.3
Q ss_pred HHHhccCcHHHHHHHHHHHHH
Q 046312 339 CACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~ 359 (514)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334455666666666555543
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.24 E-value=89 Score=23.83 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=16.1
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333444444444444433333333333334444444
No 348
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.86 E-value=1.7e+02 Score=21.99 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHcCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556665555433 3344454444 5566777777776665444555544455666665554
No 349
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.75 E-value=1.5e+02 Score=25.19 Aligned_cols=94 Identities=10% Similarity=-0.045 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-------CcchHHHHHHHHh--ccCCchHHHHHHHHHHHhC------
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP-------TEFTYPFVLKACA--EISGLNEGMQVQANVTKSG------ 159 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~------ 159 (514)
.-.+.|..+ ++.|+.+.+..+++.....+... |..-++.|..++. +.|+.+-+..+++.....+
T Consensus 12 ~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i 90 (273)
T 2pnn_A 12 YDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV 90 (273)
T ss_dssp CCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence 334444444 45677777777776665554332 2333444444443 3467766666665543211
Q ss_pred ---CC-CCcchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 160 ---LD-SDVYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 160 ---~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
.. .|..-.+ -+...+..|+.+-+..+++.-
T Consensus 91 ~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 91 NASYTDSYYKGQT-ALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp TCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred hcccccccCCCCC-HHHHHHHcCCHHHHHHHHHCC
Confidence 00 1112222 233345566666666666554
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.69 E-value=2.6e+02 Score=22.83 Aligned_cols=149 Identities=8% Similarity=-0.121 Sum_probs=73.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhCCCC--------CcchHHH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEF---TYPFVLKACAEISGLNEGMQVQANVTKSGLDS--------DVYTNNN 169 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~ 169 (514)
+...++.|+.+.+..+++. .|..++.. -++ .+...+..|+.+-+..+++ .|..+ +..- .+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g-~t 77 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEG-QT 77 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTT-CC
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCC-cC
Confidence 3344566776555544432 24444332 233 3444556677665555544 33221 1112 23
Q ss_pred HHHHHHcCCCHHHHHHHhhccCCCCh----------------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-
Q 046312 170 LVRFYGSCRRKRDACKVFDDMCERSV----------------VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT- 232 (514)
Q Consensus 170 li~~~~~~~~~~~A~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t- 232 (514)
.+...+..|+.+-+..+++.-...+. .-.+.| ...+..|+.+- ++.+.+.|..++...
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEI----VRLLIEHGADIRAQDS 152 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHH----HHHHHHCCCCCCCCCC
Confidence 34455667888877777766533221 122233 33344555443 333445555443221
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 233 -MLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 233 -~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
-.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 1233444556677777777777777776543
No 351
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.57 E-value=1.2e+02 Score=23.20 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
+++.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4445555544332 2333444444 455666666665554444444444444555555543
No 352
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=23.19 E-value=3.4e+02 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHhhccCC--CChhhHHHHHHHHHhCCChhHHHHHHH
Q 046312 181 RDACKVFDDMCE--RSVVSWNVIITVCVENLWLGEAVGYFV 219 (514)
Q Consensus 181 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 219 (514)
+.+..+|+.+-. ....++.-++..+.+....-+++..|+
T Consensus 213 ~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d 253 (256)
T 2jul_A 213 EHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFE 253 (256)
T ss_dssp HHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhc
Confidence 334444544421 123455555555555544444444443
No 353
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.08 E-value=1.4e+02 Score=24.59 Aligned_cols=131 Identities=11% Similarity=-0.023 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCCChH---HHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 046312 47 IHAQIQVSGLQNDAQ---ILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMK 121 (514)
Q Consensus 47 ~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 121 (514)
+...+.+.|..++.. -.+.| ...+ ..|+.+-+..+++.-.. ..+....+.+. ..+..|+.+ +++.+.
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L-~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll 97 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPL-MEAA--ENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKGHYE----VVQYLL 97 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHH-HHHH--HTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTTCHH----HHHHHH
T ss_pred HHHHHHHcCCCcCccCCCCCCHH-HHHH--HhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHH
Confidence 455556667655432 22233 3333 47788877777765331 22222233333 333455543 333344
Q ss_pred HcC-CCCCc---chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 122 RRG-IKPTE---FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 122 ~~~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
+.| ..++. ...+ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 98 ~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 167 (237)
T 3b7b_A 98 SNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167 (237)
T ss_dssp TTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred hCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 443 22222 1222 233344555544 4444555665443321 112333444556666655555543
No 354
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.35 E-value=1.9e+02 Score=21.26 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (514)
.+.+|+.-+++.... .+|......++..+... ++.++++.+...+..|+ .+.++...++...+.|-+++.
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~ 72 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED 72 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH
Confidence 345666666666543 34555555666554432 45566666666655465 244555566666666654433
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.34 E-value=20 Score=26.64 Aligned_cols=51 Identities=4% Similarity=-0.155 Sum_probs=23.1
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHH
Q 046312 133 PFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 133 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 186 (514)
.-.|...+.+|+.+-|+++++..++.| +...|.+++-.|...=++|-++++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 334444444455555555554444443 334444444444444444444443
No 356
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=22.01 E-value=1.6e+02 Score=23.41 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=21.4
Q ss_pred ChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 046312 77 NLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 77 ~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 120 (514)
..+++..+|..+.. .....+|..++..+... .....+|+.+
T Consensus 61 ~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~---~~~~~~F~~~ 102 (191)
T 1y1x_A 61 SLATTEKLLHMYDKNHSGEITFDEFKDLHHFI---LSMREGFRKR 102 (191)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH---HHHHHHHHHh
Confidence 44556666666542 23346677766665432 3344444444
No 357
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.69 E-value=2e+02 Score=19.81 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAE 313 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (514)
..+++.+.+.|+- +..-+..+-. .....++|..+++.+...+...|..++.++...+...
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 3455555555533 2222222222 2456777888888887777788888888877776543
No 358
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.65 E-value=3.7e+02 Score=22.79 Aligned_cols=81 Identities=9% Similarity=-0.022 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG-YAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
++..+-...+.++...|+.+..-.+...+..++...-...+.++...+ ....+...+..+.. .++...-...+.++
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGL 216 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 444444555555555554332222333333444444333444443333 12333333333332 23333334444444
Q ss_pred hccCc
Q 046312 342 NHAGM 346 (514)
Q Consensus 342 ~~~~~ 346 (514)
.+.|+
T Consensus 217 ~~~~~ 221 (280)
T 1oyz_A 217 SYRKD 221 (280)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 44443
No 359
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.63 E-value=1.8e+02 Score=26.91 Aligned_cols=330 Identities=10% Similarity=0.062 Sum_probs=157.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHc
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFT--YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY--TNNNLVRFYGS 176 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 176 (514)
+...+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+.- +.+.|..++.. .-.+.+...+.
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHH
Confidence 3444556766544 44445566665432 2344556667787665544 44556544332 12234555677
Q ss_pred CCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHH
Q 046312 177 CRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD---ETTMLVVLSACTELGNLSLGK 250 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~ 250 (514)
.|+.+-+.-+++.-..+ +...++.+ ...+..|+.+-+..++ +.+..++ .... +.+...+..|+.+-+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v- 162 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVA- 162 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHH-
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHH-
Confidence 78888877777765333 22233333 3344567766555444 3333322 1112 233444566776544
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhcCcCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 251 WVHLQLIERGTVLNCQL--GTALIDMYAKCGAVGCARLLFSRMEEINV---WTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
+.+.+.|..++... -.+.+...+..|+.+-+.-+++.-..++. .-++ .+...+..|+.+-+ +.+.+.
T Consensus 163 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~ 234 (437)
T 1n11_A 163 ---ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVA----RSLLQY 234 (437)
T ss_dssp ---HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHH----HHHHHT
T ss_pred ---HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHH----HHHHHc
Confidence 44555665444221 12234455677887766666665443322 1122 23344566775544 444455
Q ss_pred CCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHhcCCHHHHHHHHHhCC--CCC
Q 046312 326 SISPNYV---TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI---HYHTMADILARAGHLKEAYTFIMNMP--FQP 397 (514)
Q Consensus 326 g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~--~~p 397 (514)
|..++.. ..+ .+...+..|..+-+..+++ . +..++.. -.+ .+...++.|+.+-+..+++.-. ...
T Consensus 235 g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~-~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 307 (437)
T 1n11_A 235 GGSANAESVQGVT-PLHLAAQEGHAEMVALLLS----K-QANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDAT 307 (437)
T ss_dssp TCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHT----T-TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred CCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHh----c-CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCCC
Confidence 5444422 122 3334445677665544433 2 4443321 112 2334456788877777776543 112
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK 469 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (514)
+....+.| ...+..|+ .+.++.+++.-...+..+..-...|- ...+.|+.+ +.+.+.+.|..+
T Consensus 308 ~~~g~t~L-~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 308 TRMGYTPL-HVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp CSSCCCHH-HHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCS
T ss_pred CCCCCCHH-HHHHHcCc---HHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCCC
Confidence 22222223 33455677 65555444432222222221122332 334556654 444444556543
No 360
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.34 E-value=1.9e+02 Score=22.72 Aligned_cols=60 Identities=7% Similarity=0.057 Sum_probs=39.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCH
Q 046312 221 MKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER--GTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 221 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 281 (514)
+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-.
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445577766543 44556666666677788888888777 6666666666667777777754
No 361
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.12 E-value=6.3e+02 Score=25.28 Aligned_cols=88 Identities=6% Similarity=0.048 Sum_probs=46.4
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC---C----------CcchHHHHHHHHHHhc-------C
Q 046312 375 DILARAGHLKEAYTFIMNMPFQPN--PIVLRALLSASSIHDA---K----------YQDGVGNEVRRRLLEL-------E 432 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~---~----------~~~~~a~~~~~~~~~~-------~ 432 (514)
..+...|++++|..++.-+. ..| ..+.+.++.-.....+ . .-...|.++.+..... .
T Consensus 451 ~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 34557888999998888887 222 2334444433322111 0 0122344444443221 1
Q ss_pred CCCCchHH---HHHHHH--HhcCCHHHHHHHHHHHH
Q 046312 433 PRGSQNLV---IVANKY--AEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 433 p~~~~~~~---~l~~~~--~~~g~~~~A~~~~~~m~ 463 (514)
+.+..++. .+...+ ...|+|+.|.+.++++.
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 11122333 444444 88999999998888763
No 362
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.02 E-value=3.2e+02 Score=24.48 Aligned_cols=75 Identities=11% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH--HHHHHH---HhcCCHHHHHHHHH
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH--TMADIL---ARAGHLKEAYTFIM 391 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~---~~~g~~~~A~~~~~ 391 (514)
+++..+.+.|+.|...++..++..+.+.=.++.+.++|+-+... |. ....+- +++..+ .-..++++...++.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~--~~l~~valaiL~~~~~~Ll~~d~~~il~~L~ 290 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GE--EFLFRTALGILKLFEDILTKMDFIHMAQFLT 290 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CH--HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35566677889999999999998888888899999999999875 42 222222 222111 12346777777777
Q ss_pred hCC
Q 046312 392 NMP 394 (514)
Q Consensus 392 ~~~ 394 (514)
.++
T Consensus 291 ~lp 293 (334)
T 2qq8_A 291 RLP 293 (334)
T ss_dssp SCC
T ss_pred hCC
Confidence 776
No 363
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.94 E-value=1.3e+02 Score=19.04 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKAC 139 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 139 (514)
++|.+.|.+|++..-.+..-||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56677777766544344455677666666
No 364
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.83 E-value=5.9e+02 Score=24.84 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhCCCCCh--------HHHHHHHHhcccC-CCCChHHHHHHHcc-----cCC-CCCcccHHHHHHHHH
Q 046312 41 KKHLYQIHAQIQVSGLQNDA--------QILKELVRFCTLS-SSKNLTYARSILCN-----YVN-DSVPIPWNNLIRGYA 105 (514)
Q Consensus 41 ~~~~~~~~~~~~~~g~~~~~--------~~~~~ll~~~~~~-~~g~~~~A~~~~~~-----~~~-~~~~~~~~~li~~~~ 105 (514)
+++...|++.+....+.+|. .....|+.+.-.. -.-+.+...+++.. .+. ..++.-| .++..+.
T Consensus 175 l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW-~~v~~Lv 253 (570)
T 3f3f_C 175 LEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFW-KLLNQLV 253 (570)
T ss_dssp HHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCCSCHHHHHHHTTC----CCSSSSCSHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCCCCHHHHHHHHhcccccCCCCCCCCccHH-HHHHHHH
Confidence 34445677777766666544 2234455433311 34456778888875 231 2334456 7888888
Q ss_pred hCCCchHHHHHHH
Q 046312 106 WSDRPREAVWVFI 118 (514)
Q Consensus 106 ~~g~~~~a~~~~~ 118 (514)
-+|.+++|..+++
T Consensus 254 LRGl~~qA~~~L~ 266 (570)
T 3f3f_C 254 LRGLLSQAIGCIE 266 (570)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HcccHHHHHHHHH
Confidence 8999999999987
No 365
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.77 E-value=4.2e+02 Score=24.10 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYA--EEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
......++.-|...|+.++|.+.++++..|+ ......++......++. +.+..++..+...|+-+.......+..
T Consensus 12 ~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 12 LKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHhccCcHH
Q 046312 340 ACNHAGMVE 348 (514)
Q Consensus 340 ~~~~~~~~~ 348 (514)
.+....+..
T Consensus 92 lle~l~Dl~ 100 (364)
T 3l6a_A 92 VLDQCPKLE 100 (364)
T ss_dssp HHHTHHHHH
T ss_pred HHhhChHhc
No 366
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.75 E-value=1.7e+02 Score=21.85 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=20.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG 244 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 244 (514)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444444444555555555555544444444444444444333
No 367
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.31 E-value=1.2e+02 Score=16.41 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
-...+.-|...|..++|..+-++|+.
T Consensus 5 SaQW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 5 SAQWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 34678889999999999999888863
No 368
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.06 E-value=5.7e+02 Score=24.30 Aligned_cols=86 Identities=19% Similarity=0.031 Sum_probs=38.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
...+...|++++|-++-..-.+ |+--+..|.+.+-..=..-|+..--+.+|..+.+.| ..+..---.+++.-...|+.
T Consensus 368 F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~ 445 (494)
T 1bpo_A 368 FNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRK 445 (494)
T ss_dssp HHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHH
Confidence 3444445555555555433322 233344444433333333455555555555555555 33333333344444445555
Q ss_pred HHHHHHhh
Q 046312 181 RDACKVFD 188 (514)
Q Consensus 181 ~~A~~~~~ 188 (514)
+-.++++.
T Consensus 446 ~llekWl~ 453 (494)
T 1bpo_A 446 QLLEKWLK 453 (494)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 54444443
Done!