BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046314
(1137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 3 SSSPSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIE 61
SS + YDVFLSFRG DTR NF S LY L + I+TF D+ +L G SP L IE
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 62 GSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGEGF 121
S+ +V++ S++YA+S WCL+ELV I+ + TV+PI+Y V P+ VR QTG E F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 122 VKLEQQFKEKAETVRKWRDAMIKTSYLSGHESTKIRPEAKLVQVIVNDILKK 173
K +E E V KWR A+ + LSG S ++KLV I N+I K
Sbjct: 122 KK--HASREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 2 ASSSPSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDED-LNRGDEISPALMKAI 60
+ S PS Y+VFLSFRG DTRE FT LY +L KI TF D+D L +G EI P L++AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 61 EGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVI-PIYYHVSPSDVRKQTGTFGE 119
+ SKI V I S YA SKWCL EL +I++ + + +I PI+Y V PSDVR QTG + +
Sbjct: 88 DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147
Query: 120 GFVKLEQQFKEKAETVRKWRDAMIKTSYLSGHESTKIRPEAKLVQVIVNDI 170
F K +F +T++ W+DA+ K L G K + + + DI
Sbjct: 148 AFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 640 LKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR 699
LKS+ + +S P P LE ++L CT L P L L + C NL
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 700 SFPSNLHFVSPV-NIDCSFCVNLTEFPRI 727
+ P ++H ++ + +D CVNL+ P +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 638 FKLKSINLSHSQY-------LIRIPDPSET-PSLERINLWNCTNLAWVPSSIQNFNHLSL 689
F ++ LSH Q+ L +PD + LE + L L +P+SI + N L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRE 154
Query: 690 LCFQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEEVPSSVE 749
L + C L P L + D S E + N+ L L T I +P+S+
Sbjct: 155 LSIRACPELTELPEPL-----ASTDAS-----GEHQGLV-NLQSLRLEWTGIRSLPASIA 203
Query: 750 CLTNLEYLYINRCKRLKRVSTSICKLKSLIWLCLNECLNL 789
L NL+ L I R L + +I L L L L C L
Sbjct: 204 NLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTAL 242
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 3 SSSPSCNYDVFLSFRGEDTRENFTSHLYAALCGKKIKTFIDE-DLNRGDEISPALMKAIE 61
+S+P +D+F+S ED + +F L L + + D+ L GD + ++ K +
Sbjct: 16 TSAPP--HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG 72
Query: 62 GSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGE 119
S+ +++ S + +W EL + + ++ ++PI++ VS +V + T +
Sbjct: 73 SSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQV-----VSL 265
+G++G G+GKT L + L N V+ E G V E G L H K S+
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMKDSGVISKTSM 206
Query: 266 LLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
+ G+ R+ + G + Y +R + + F+ D++ +F Q V L G P
Sbjct: 207 VFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFI-DNIFRFTQAGSEVSALLGRMP 265
Query: 317 GS 318
+
Sbjct: 266 SA 267
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 37/289 (12%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVS---NEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267
V I+GM G GK+ LA S F G ++ ++ ++G+ L+ L + L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-LMKLQNLCMRLDQ 208
Query: 268 GERIEMGGPNIPAYTLERLR------RTKVFFVLDDVSKFEQLKYFVGW-LHGFCPGSRI 320
E P +RLR + +LDDV + W L F +I
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV--------WDPWVLKAFDNQCQI 260
Query: 321 VVTTRDKQVLRKHGVNDEYVYEVER-LNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRY 379
++TTRDK V + ++V VE L ++GLE+ + + E L A + ++
Sbjct: 261 LLTTRDKSVTDS-VMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKE 316
Query: 380 AEGNPLALEVLGSSLHQKSKLDWENVLDNL--KQISGVSR--------IYNVLRISYEEL 429
+G+PL + ++G+ L W L L KQ + + + + IS E L
Sbjct: 317 CKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 430 SFEEKSTFLDIACFFKG-ECKDRVLMLLHDRQY-NVTHVLSILIDKSLI 476
+ K + D++ K + +VL +L D + V +L ++KSL+
Sbjct: 376 REDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 37/289 (12%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVS---NEFEGNCFIENVREEIENGVGLVHLHKQVVSLLL 267
V I+GM G GK+ LA S F G ++ ++ ++G+ L+ L + L
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL-LMKLQNLCMRLDQ 215
Query: 268 GERIEMGGPNIPAYTLERLR------RTKVFFVLDDVSKFEQLKYFVGW-LHGFCPGSRI 320
E P +RLR + +LDDV + W L F +I
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV--------WDPWVLKAFDNQCQI 267
Query: 321 VVTTRDKQVLRKHGVNDEYVYEVER-LNEDEGLELFYKYAFRQSHCPEHLTALSKKAVRY 379
++TT DK V + ++V VE L ++GLE+ + + E L A + ++
Sbjct: 268 LLTTSDKSVTDS-VMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKE 323
Query: 380 AEGNPLALEVLGSSLHQKSKLDWENVLDNL--KQISGVSR--------IYNVLRISYEEL 429
+G+PL + ++G+ L W L L KQ + + + + IS E L
Sbjct: 324 CKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 382
Query: 430 SFEEKSTFLDIACFFKG-ECKDRVLMLLHDRQY-NVTHVLSILIDKSLI 476
+ K + D++ K + +VL +L D + V +L ++KSL+
Sbjct: 383 REDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 431
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQ--VVS---L 265
+G++G G+GKT L + L + ++ E G V E G L H K V+S +
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAM 213
Query: 266 LLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
+ G+ R+ + G + Y + + + F+ D++ +F Q V L G P
Sbjct: 214 VFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFI-DNIFRFTQAGSEVSALLGRMP 272
Query: 317 GS 318
+
Sbjct: 273 SA 274
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 31/287 (10%)
Query: 53 SPALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRK 112
S A I G +VI D + L ++ L+ K +G+ V+ + H+ + VR
Sbjct: 35 SAAQSTPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRT 94
Query: 113 QTGTFGEGFVKLEQQFKEKAE-TVRKWRDAMIKTSYLSGHESTKIRP-EAKLVQVIVNDI 170
EG V+ E+ +V R+ + + + G + P ++KL + I D
Sbjct: 95 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHAD- 153
Query: 171 LKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFN 230
S + S+ + L + I+ + L + +G++G G+GKT + L N
Sbjct: 154 -----PPSFAEQSTSAEI-LETGIKVVD--LLAPYARGGKIGLFGGAGVGKTVFIQELIN 205
Query: 231 QVSNEFEGNCFIENVREEIENG---------VGLVHLHKQV-VSLLLGE---------RI 271
++ G V E G G+++L + V+L+ G+ R+
Sbjct: 206 NIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARV 265
Query: 272 EMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCPGS 318
+ G I Y + + + F+ D++ +F Q V L G P +
Sbjct: 266 ALTGLTIAEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSALLGRIPSA 311
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 31/285 (10%)
Query: 53 SPALMKAIEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRK 112
S A I G +VI D + L ++ L+ K +G+ V+ + H+ + VR
Sbjct: 2 SAAQSTPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRT 61
Query: 113 QTGTFGEGFVKLEQQFKEKAE-TVRKWRDAMIKTSYLSGHESTKIRP-EAKLVQVIVNDI 170
EG V+ E+ +V R+ + + + G + P ++KL + I D
Sbjct: 62 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHAD- 120
Query: 171 LKKLECKSISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFN 230
S + S+ + L + I+ + L + +G++G G+GKT + L N
Sbjct: 121 -----PPSFAEQSTSAEI-LETGIKVVD--LLAPYARGGKIGLFGGAGVGKTVFIQELIN 172
Query: 231 QVSNEFEGNCFIENVREEIENG---------VGLVHLHKQV-VSLLLGE---------RI 271
++ G V E G G+++L + V+L+ G+ R+
Sbjct: 173 NIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARV 232
Query: 272 EMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
+ G I Y + + + F+ D++ +F Q V L G P
Sbjct: 233 ALTGLTIAEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSALLGRIP 276
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 31/278 (11%)
Query: 60 IEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGE 119
I G +VI D + L ++ L+ K +G+ V+ + H+ + VR E
Sbjct: 4 ITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTE 63
Query: 120 GFVKLEQQFKEKAE-TVRKWRDAMIKTSYLSGHESTKIRP-EAKLVQVIVNDILKKLECK 177
G V+ E+ +V R+ + + + G + P ++KL + I D
Sbjct: 64 GLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHAD------PP 117
Query: 178 SISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237
S + S+ + L + I+ + L + +G++G G+GKT + L N ++
Sbjct: 118 SFAEQSTSAEI-LETGIKVVD--LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG 174
Query: 238 GNCFIENVREEIENG---------VGLVHLHKQV-VSLLLGE---------RIEMGGPNI 278
G V E G G+++L + V+L+ G+ R+ + G I
Sbjct: 175 GFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTI 234
Query: 279 PAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
Y + + + F+ D++ +F Q V L G P
Sbjct: 235 AEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSALLGRIP 271
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 31/278 (11%)
Query: 60 IEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGE 119
I G +VI D + L ++ L+ K +G+ V+ + H+ + VR E
Sbjct: 15 ITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTE 74
Query: 120 GFVKLEQQFKEKAE-TVRKWRDAMIKTSYLSGHESTKIRP-EAKLVQVIVNDILKKLECK 177
G V+ E+ +V R+ + + + G + P ++KL + I D
Sbjct: 75 GLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHAD------PP 128
Query: 178 SISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237
S + S+ + L + I+ + L + +G++G G+GKT + L N ++
Sbjct: 129 SFAEQSTSAEI-LETGIKVVD--LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG 185
Query: 238 GNCFIENVREEIENG---------VGLVHLHKQV-VSLLLGE---------RIEMGGPNI 278
G V E G G+++L + V+L+ G+ R+ + G I
Sbjct: 186 GFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTI 245
Query: 279 PAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
Y + + + F+ D++ +F Q V L G P
Sbjct: 246 AEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSALLGRIP 282
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 31/278 (11%)
Query: 60 IEGSKISVIIFSKDYASSKWCLNELVKILKCKNLKGQTVIPIYYHVSPSDVRKQTGTFGE 119
I G +VI D + L ++ L+ K +G+ V+ + H+ + VR E
Sbjct: 15 ITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTE 74
Query: 120 GFVKLEQQFKEKAE-TVRKWRDAMIKTSYLSGHESTKIRP-EAKLVQVIVNDILKKLECK 177
G V+ E+ +V R+ + + + G + P ++KL + I D
Sbjct: 75 GLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHAD------PP 128
Query: 178 SISSDSSKGLVGLNSRIECIKSLLCVGFPDVRIVGIWGMGGIGKTTLAKALFNQVSNEFE 237
S + S+ + L + I+ + L + +G++G G+GKT + L N ++
Sbjct: 129 SFAEQSTSAEI-LETGIKVVD--LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG 185
Query: 238 GNCFIENVREEIENG---------VGLVHLHKQV-VSLLLGE---------RIEMGGPNI 278
G V E G G+++L + V+L+ G+ R+ + G I
Sbjct: 186 GFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTI 245
Query: 279 PAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWLHGFCP 316
Y + + + F+ D++ +F Q V L G P
Sbjct: 246 AEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSALLGRIP 282
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT + L N ++ G V E G G+++L +
Sbjct: 148 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGE 207
Query: 262 V-VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGWL 311
V+L+ G+ R+ + G I Y + + + F+ D++ +F Q V L
Sbjct: 208 SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFI-DNIFRFTQAGSEVSAL 266
Query: 312 HGFCP 316
G P
Sbjct: 267 LGRIP 271
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 213
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 214 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 272
Query: 311 LHGFCPGS 318
L G P +
Sbjct: 273 LLGRIPSA 280
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 274
Query: 311 LHGFCPGS 318
L G P +
Sbjct: 275 LLGRIPSA 282
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 274
Query: 311 LHGFCPGS 318
L G P +
Sbjct: 275 LLGRIPSA 282
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 274
Query: 311 LHGFCPGS 318
L G P +
Sbjct: 275 LLGRIPSA 282
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 261
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 262 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 320
Query: 311 LHGFCP 316
L G P
Sbjct: 321 LLGRIP 326
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 211
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 212 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 270
Query: 311 LHGFCP 316
L G P
Sbjct: 271 LLGRIP 276
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 211 VGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENG---------VGLVHLHKQ 261
+G++G G+GKT L L N V+ G V E G G+++L
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 203
Query: 262 V--VSLLLGE---------RIEMGGPNIPAYTLERLRRTKVFFVLDDVSKFEQLKYFVGW 310
V+L+ G+ R+ + G + Y ++ + + F+ D++ +F Q V
Sbjct: 204 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFI-DNIFRFTQAGSEVSA 262
Query: 311 LHGFCPGS 318
L G P +
Sbjct: 263 LLGRIPSA 270
>pdb|2GSI|A Chain A, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|C Chain C, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|E Chain E, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|G Chain G, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
Length = 215
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 692 FQGCKNLRSFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNL--CDTA--IEEVPSS 747
F G + F N+H V + +C ++ E PR SG TKL + D A + P S
Sbjct: 66 FSGSGSGTDFTLNIHPVEEEDAATYYCSHIRELPRSSGGGTKLEIKRADAAPTVSIFPPS 125
Query: 748 VECLTN 753
E LT+
Sbjct: 126 SEQLTS 131
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 727 ISGNI------TKLNLCDTAIEEVPSSVECLTNLEYLYINRCKRLKRVSTSICKLKSLIW 780
IS NI T+L L ++ E+P+ ++ L+NL L ++ RL + + L +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKY 297
Query: 781 LCLNECLNLEKSWSELGNLKSFQYIGAHGSTI 812
+ + W E GNL + Q++G G+ +
Sbjct: 298 FYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPL 328
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 206 PDVRIVGIWGMGGIGKTTLAKALFNQVSNEFEGNCFIENVREEIENGVGLVHLHKQVVSL 265
PDVR+V + G G + + L ++ ++EG I +RE + + LV+L K VVS
Sbjct: 56 PDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGR--IRIMREARDLVLNLVNLDKPVVSA 113
Query: 266 LLGERIEMG 274
+ G + G
Sbjct: 114 IRGPAVGAG 122
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 210 IVGIWGMGGIGKTTLAKALFNQVSNEFEGNC 240
I+GI G GIGKTT A+ L +++ + EG+
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITAD-EGSV 325
>pdb|2JX3|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of Dek
Length = 131
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 108 SDVRKQTGTF-GEGFVKLEQQFKEKAETVRKWRDAMIKT 145
S ++K G F G F K Q+K+K E ++K+R+AM+K+
Sbjct: 44 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKS 82
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 640 LKSINLSHSQYLIRIPDPSETPSLERINLWNCTNLAWVPSSIQNFNHLSLLCFQGCKNLR 699
L+ +N+S+++ LI +P + P LER+ + + +LA VP QN L + LR
Sbjct: 319 LEELNVSNNK-LIELP--ALPPRLERL-IASFNHLAEVPELPQNLKQLHV----EYNPLR 370
Query: 700 SFPSNLHFVSPVNIDCSFCVNLTEFPRISGNITKLNLCDTAIEE---VPSSVECL 751
FP V D +L E P + N+ +L++ + E +P SVE L
Sbjct: 371 EFPDIPESVE----DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,836,676
Number of Sequences: 62578
Number of extensions: 1270110
Number of successful extensions: 3626
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3594
Number of HSP's gapped (non-prelim): 44
length of query: 1137
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1028
effective length of database: 8,152,335
effective search space: 8380600380
effective search space used: 8380600380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)